Citrus Sinensis ID: 010748

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
Protein Sequence
MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEEEEEEccccccccEEEEccEEEcccccccccccccccccccccEEEEEEccccEEEEEccccccccccEEEEEccccEEEcccccccccccccccccccccEEEEEEcccccEEEEEccccccEEEEEccccEEEcccccccccEEEEEEccccccEEEEccccccEEEEEccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccHHHHHHccccccccccccccHccccccEEEEcccccccEEEEccccccccccEEEEcccccEEEEEcccccEEEEEEEEEcccccEEEEEEcccccEEccccccEcEEEccEEEcccccEEEEEccccEEEEEEccccccccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
miaavswvpkgaskavpeeaeppskEEIEEIINSgaleheieddrsedddedmevedeakqsdDASQAVAVANALgktsksknsgtkfddiTDGLkeldmdhyddeddgvEIFGKGLGDlyyasnqmdpylkdkddedsedledmtinpndaVIVCARNEDDVSHLEVYILEesdggdpnlyvhhhiiipafplcmawldcplkdrekgnfmavgsmepaieiwdldvidevqphvilggideekkkkkskkgkkssikykkgshtdsvlgLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVawnhhspqillsgsfdrsvvmkdaristhsGFKWAVAADVeslawdphaehsfvvsledgtikgfdirtaksdpdstsqqssftlhahdkavctisynplvpnllatgstdkMVKLWdlsnnqpsciasrnpkagaVFSVafsedspfvlaiggskgklEIWDTLsdagisnrfskyskpkkpqsvi
Flexible Loop (DISEMBL)
miaavswvpkgaskavpeeaeppskEEIEEIInsgaleheieddRSEDDDEDMEVEDeakqsddasQAVAVANalgktsksknsgtkfddITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHvilggideekkkkkskkgkkssikykkgshtdsvlglAWNKEFRNILASasadkqvkIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSdagisnrfskyskpkkpqsvi
Low Complexity Region (SEG)
MIAAVSWVPKGaskavpeeaeppskeeieeiiNSGALeheieddrsedddedmevedeAKQSDDASQAVAVANALgktsksknsgtkFDDITDGLKELdmdhyddeddGVEIFGKGLGDLYYASNQMDPYlkdkddedsedledMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEkkkkkskkgkkssikykkgsHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI
Disordered region (IsUnstruct)
**********************************************************************************************************DDGVEIFGKGLGDLYYAS************************PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI**************************SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI****************TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG******************
Disordered Region (DISOPRED)
MIAAVSWVPKGASKAVPEEAEPPSKEEIEE*************************************************************TDGLKELDMDHYDDEDDGVE*F******LYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID**K**KKS**G*KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK*SKP***QSVI
Disordered Region (DISEMBL)
MIAAVSWV******************EIEEIINSGALEHEI*************************QAVAVANALG********GTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE*******************SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA*************TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS************
Disordered Region (DISPRO)
MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDR*******************************************DDITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	502	2.2.26 [Sep-21-2011]
Q9P775	516	Uncharacterized WD repeat	yes	no	0.906	0.881	0.352	8e-76
Q2HJ56	500	Periodic tryptophan prote	yes	no	0.920	0.924	0.352	7e-74
Q13610	501	Periodic tryptophan prote	yes	no	0.922	0.924	0.346	4e-72
Q99LL5	501	Periodic tryptophan prote	yes	no	0.916	0.918	0.351	5e-72
P21304	576	Periodic tryptophan prote	yes	no	0.924	0.805	0.327	1e-60
Q00808	1356	Vegetative incompatibilit	no	no	0.364	0.134	0.351	1e-15
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.404	0.161	0.321	6e-15
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.350	0.115	0.282	1e-13
Q54SD4	423	Probable histone-binding	no	no	0.386	0.458	0.302	1e-12
Q4WEI5	436	Histone acetyltransferase	no	no	0.438	0.504	0.275	2e-12

>sp|Q9P775|YBEG_SCHPO Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.16 PE=1 SV=1

 Score =  285 bits (728), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 289/502 (57%), Gaps = 47/502 (9%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIE-EIINSGALEHEIEDDRSEDDDEDMEVEDEA 59
           ++++V++VP+G +   P+  +    +EIE E IN  + + ++ED R+   D    +ED  
Sbjct: 3   IVSSVAFVPRGYASEFPKSYD---IDEIEYERINQLS-KLKLEDARA---DLQSSMEDSN 55

Query: 60  KQSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDG------VEIF 113
           K + +  +    A  + +TS         +++ D LK  ++D YDD+++         +F
Sbjct: 56  KANGNGEETTDGAEGVLQTS---------EEVDDELKVYNLDTYDDDEEEAETEGPAAMF 106

Query: 114 GKGLGDLYYASNQMDPYLK-DKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILE 172
               G  Y+ + + DPY+  D  ++D  + E+M I P D++++ AR ED++SH+EVY+ E
Sbjct: 107 SNIRGLAYHENGEKDPYITIDPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYVYE 166

Query: 173 ESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL--KDREKGNFMAVGSMEPAIEIWDLDVID 230
            ++    NLYVHH  ++P FPLC+ WLD  +   D   GN++AVG+ +P IEIWDLD+ID
Sbjct: 167 PTE---ENLYVHHDFLLPTFPLCLEWLDYKVGTSDNAPGNYVAVGTFDPEIEIWDLDIID 223

Query: 231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290
            V P  +LG         +  K KK S K     HTD+VL L+ N+   N+L S SAD  
Sbjct: 224 AVYPAAVLGA-----GASQVNKKKKKSKKINDSYHTDAVLALSSNRNAHNLLVSGSADTT 278

Query: 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKW 349
           +K+WD++   C  +  +H+DKV  + W   +P +LLSGS+D++  + D R+    S F+ 
Sbjct: 279 LKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSFQ- 337

Query: 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT 409
            V +DVE++AWD H+E++F +  ++G +   D R           +S + L AHD  +  
Sbjct: 338 -VTSDVENVAWDQHSENNFFIGTDNGIVYYCDARNLS--------KSVWQLQAHDGPISC 388

Query: 410 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED--SPFVLAI 467
           +S NP VP+ +ATGSTD++VKLW+ S++ P  + SR+   G VF+ +F+ D  + F LA 
Sbjct: 389 LSVNPSVPSFVATGSTDRVVKLWNTSDSSPKMVVSRDLDVGRVFTCSFTTDESTAFHLAA 448

Query: 468 GGSKGKLEIWDTLSDAGISNRF 489
            GSKG + +WDT ++ G+   F
Sbjct: 449 SGSKGVVRVWDTATNPGVRKAF 470

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2HJ56|PWP1_BOVIN Periodic tryptophan protein 1 homolog OS=Bos taurus GN=PWP1 PE=2 SV=1

 Score =  278 bits (711), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 176/499 (35%), Positives = 267/499 (53%), Gaps = 37/499 (7%)

Query: 2   IAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQ 61
           +  V+WV  G +K  P++ E  SKEE++ +I     + +++++   D+ E     ++  Q
Sbjct: 7   VTCVAWVRCGVAKETPDKVEL-SKEEVKRLIAEA--KEKLQEEGGSDEQETGNPSEDGMQ 63

Query: 62  SDDASQAVAVANALGKTSKSKNSGTKFDDIT---DGLKELDMDHYDDEDD-GVEIFGKGL 117
           S         A    +  +    G   DD T   D L E D+D YD+E D   E  G+ L
Sbjct: 64  S---------ARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDAETLGESL 114

Query: 118 -GDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 176
            G   Y SN  DPY+  KD E  E  ED  I P+D +IVC R E D  +LEV++  + + 
Sbjct: 115 LGLTVYGSNDQDPYVTLKDTEQYE-REDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEED 173

Query: 177 GDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPH 235
              + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D ++P 
Sbjct: 174 ---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEP- 229

Query: 236 VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295
            +     +  KKKK K  K SS       HTD+VL L+WNK  RN+LASASAD  V +WD
Sbjct: 230 -VFTLGSKLSKKKKKKGKKNSSAD----GHTDAVLDLSWNKLVRNVLASASADNTVILWD 284

Query: 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV 355
           ++ GK   +L  HTDKVQ + ++    Q L+SGS+D+SV + D R    S   W  +  +
Sbjct: 285 MSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPEESHRMWRFSGQI 344

Query: 356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415
           E + W+  +   F+ S +DG +   D R         S +  FTL+AH+  +  +  +  
Sbjct: 345 ERVTWNHFSPCHFLASTDDGFVYNLDAR---------SDKPIFTLNAHNDEISGLDLSSQ 395

Query: 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475
           +   L T S DK VK+WD+  ++PS + SR+ K G +F  +   D PF+ A GG K  L 
Sbjct: 396 IKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFGGQKEGLR 455

Query: 476 IWDTLSDAGISNRFSKYSK 494
           +WD  + + ++  F +  +
Sbjct: 456 VWDISTVSSVNEAFGRRER 474

May play an important role in cell growth and/or transcription.

Bos taurus (taxid: 9913)

>sp|Q13610|PWP1_HUMAN Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=1 SV=1

 Score =  272 bits (696), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 173/499 (34%), Positives = 263/499 (52%), Gaps = 36/499 (7%)

Query: 2   IAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQ 61
           +  V+WV  G +K  P++ E  SKEE++ +I           ++ +++    + E+    
Sbjct: 7   VTCVAWVRCGVAKETPDKVEL-SKEEVKRLIAEAK-------EKLQEEGGGSDEEETGSP 58

Query: 62  SDDASQAVAVANALGKTSKSKNSGTKFDDIT---DGLKELDMDHYDDEDD-GVEIFGKGL 117
           S+D  Q+   A    +  +    G   DD T   D L E D+D YD+E D   E  G+ L
Sbjct: 59  SEDGMQS---ARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDAETLGESL 115

Query: 118 -GDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 176
            G   Y SN  DPY+  KD E  E  ED  I P+D +IVC R E D  +LEV++  + + 
Sbjct: 116 LGLTVYGSNDQDPYVTLKDTEQYER-EDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEED 174

Query: 177 GDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPH 235
              + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D ++P 
Sbjct: 175 ---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEP- 230

Query: 236 VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295
                +     K   KK KK         HTD+VL L+WNK  RN+LASASAD  V +WD
Sbjct: 231 -----VFTLGSKLSKKKKKKGKKSSSAEGHTDAVLDLSWNKLIRNVLASASADNTVILWD 285

Query: 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV 355
           ++ GK   +L  HTDKVQ + ++    Q L+SGS+D+SV + D R    S   W  +  +
Sbjct: 286 MSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPDESHRMWRFSGQI 345

Query: 356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415
           E + W+  +   F+ S +DG +   D R         S +  FTL+AH+  +  +  +  
Sbjct: 346 ERVTWNHFSPCHFLASTDDGFVYNLDAR---------SDKPIFTLNAHNDEISGLDLSSQ 396

Query: 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475
           +   L T S DK VK+WD+  ++PS + SR+ K G +F  +   D PF+ A GG K  L 
Sbjct: 397 IKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFGGQKEGLR 456

Query: 476 IWDTLSDAGISNRFSKYSK 494
           +WD  + + ++  F +  +
Sbjct: 457 VWDISTVSSVNEAFGRRER 475

May play an important role in cell growth and/or transcription.

Homo sapiens (taxid: 9606)

>sp|Q99LL5|PWP1_MOUSE Periodic tryptophan protein 1 homolog OS=Mus musculus GN=Pwp1 PE=1 SV=1

 Score =  272 bits (695), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 176/501 (35%), Positives = 262/501 (52%), Gaps = 41/501 (8%)

Query: 2   IAAVSWVPKGASKAVPEEAEPPSKEEIEEIINS--GALEHEIEDDRSEDDDEDMEVEDEA 59
           +  V+WV +G +K  P++ E  SKEE+  +I    G L+ E             E E+  
Sbjct: 7   VTCVAWVRRGVAKETPDKVEL-SKEEVNRLIAEAKGKLQEEGG----------SEEEEAG 55

Query: 60  KQSDDASQAVAVANALGKTSKSKNSGTKFDDIT---DGLKELDMDHYDDEDD-GVEIFGK 115
             S+D  Q+           +S   G   DD T   D L   D+D+YD+ED+   E  G+
Sbjct: 56  NPSEDGMQS---GPTQAPPRESLEDGDPQDDRTLDDDELAGYDLDNYDEEDNPDAETIGE 112

Query: 116 GL-GDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES 174
            L G   Y SN  DPY+  KD E  E  ED  I P D +IVC R E +  +LEV++  + 
Sbjct: 113 SLLGLTVYGSNDQDPYVTLKDTEQYEH-EDFLIKPTDNLIVCGRAEQEQCNLEVHVYNQE 171

Query: 175 DGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQ 233
           +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D ++
Sbjct: 172 E---ESFYVHHDILLSAYPLSVEWLNFDPSPDASTGNYIAVGNMTPVIEVWDLDIVDSLE 228

Query: 234 PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293
           P      +     K   KK KK         HTD+VL L+WNK  RN+LASASAD  V +
Sbjct: 229 P------VFTLGSKLSKKKKKKGKKSSSAEGHTDAVLDLSWNKTVRNVLASASADSTVVL 282

Query: 294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353
           WD++ GK    L  HTDKVQ + ++    Q L+SGS+D+SV + D R  + +  +W  + 
Sbjct: 283 WDLSVGKSVARLTAHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRDPSQNHRQWRFSG 342

Query: 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 413
            +E + W+  +   F+ S +DG +   D R         S +  FTL+AH+  +  +  +
Sbjct: 343 QIERVTWNHFSPCHFLASTDDGFVYNLDAR---------SDKPIFTLNAHNDEISGLDLS 393

Query: 414 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 473
             +   L T S DK VK+WD+  ++PS I SR+ K G +F  +   D PFV A GG K  
Sbjct: 394 SQIKGCLVTASADKFVKIWDILGDRPSLIHSRDMKMGVLFCSSCCPDLPFVYAFGGQKEG 453

Query: 474 LEIWDTLSDAGISNRFSKYSK 494
           L +WD  + + ++  F +  +
Sbjct: 454 LRVWDISTVSSVNEAFGRRER 474

May play an important role in cell growth and/or transcription.

Mus musculus (taxid: 10090)

>sp|P21304|PWP1_YEAST Periodic tryptophan protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PWP1 PE=1 SV=1

 Score =  234 bits (598), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 177/541 (32%), Positives = 275/541 (50%), Gaps = 77/541 (14%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MI+A +WVP+G S   PE+      EE+E I     L   ++D ++  +    E E E+ 
Sbjct: 1   MISATNWVPRGFSSEFPEKY-VLDDEEVERINQLAQLN--LDDAKATLE----EAEGESG 53

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
             DDA        A G ++K K+      DI D LKE +++ YDDE+      GK +   
Sbjct: 54  VEDDA--------ATGSSNKLKDQL----DIDDDLKEYNLEEYDDEEIADNEGGKDVSMF 101

Query: 121 YYASNQMD-----------PYLKDKDDEDS-EDLEDMTINPNDAVIVCARNEDDVSHLEV 168
              SN  D           PY+   + EDS E+ +++ + P+D +++ AR EDDVS+L++
Sbjct: 102 PGLSNDSDVKFHEGEKGEDPYISLPNQEDSQEEKQELQVYPSDNLVLAARTEDDVSYLDI 161

Query: 169 YI-------------LEESDGGDPN----------LYVHHHIIIPAFPLCMAWLDCPL-- 203
           Y+             +EE D  DP+          LYVHH +++PAFPLC+ WLD  +  
Sbjct: 162 YVYDDGAGFHSSDIPVEEGDEADPDVARGLVRDPALYVHHDLMLPAFPLCVEWLDYKVGS 221

Query: 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG-IDEEK-KKKKSKKGKKSSIKYK 261
              E  N+ A+G+ +P IEIW+LD +D+  P +ILG  +D      K  KK KKS   + 
Sbjct: 222 NSEEAANYAAIGTFDPQIEIWNLDCVDKAFPDMILGEPLDNSMVSLKSKKKKKKSKTGHI 281

Query: 262 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNH 319
              HTD+VL +A NK FR++LAS SAD  VK+WD+ +G    +L   H    V +  W+ 
Sbjct: 282 TTHHTDAVLSMAHNKYFRSVLASTSADHTVKLWDLNSGNAARSLASIHSNKNVSSSEWHM 341

Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLEDGTI 377
            +  ILL+G +D  V + D RIS  S     W+  A  E       +E+  +   + G +
Sbjct: 342 LNGSILLTGGYDSRVALTDVRISDESQMSKYWSAMAGEEIETVTFASENIILCGTDSGNV 401

Query: 378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLW---- 432
             FDIR      ++ +++  +TL AHD  + T+  N  +P +++TG+  +K VKLW    
Sbjct: 402 YSFDIR------NNENRKPVWTLKAHDAGISTLCSNKFIPGMMSTGAMGEKTVKLWKFPL 455

Query: 433 -DLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPF--VLAIGGSKGKLEIWDTLSDAGISNR 488
            D +N + PS + SR+   G V + +F+ D      + IGG    L++WD  ++  +   
Sbjct: 456 DDATNTKGPSMVLSRDFDVGNVLTSSFAPDIEVAGTMVIGGVNKVLKLWDVFTNRSVRKS 515

Query: 489 F 489
           F
Sbjct: 516 F 516

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 19/202 (9%)

Query: 282  LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDA 339
            +AS S D  +KIWD  +G C  TLE H D V +VA+   SP  Q + SGS D ++ + DA
Sbjct: 1066 VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAF---SPDGQRVASGSIDGTIKIWDA 1122

Query: 340  RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
               T +         V S+A+ P  +     S+ DGTIK +         D+ S   + T
Sbjct: 1123 ASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSI-DGTIKIW---------DAASGTCTQT 1172

Query: 400  LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
            L  H   V +++++P     +A+GS+DK +K+WD ++   +C  +     G V SVAFS 
Sbjct: 1173 LEGHGGWVQSVAFSP-DGQRVASGSSDKTIKIWDTASG--TCTQTLEGHGGWVQSVAFSP 1229

Query: 460  DSPFVLAIGGSKGKLEIWDTLS 481
            D   V A G S   ++IWDT S
Sbjct: 1230 DGQRV-ASGSSDNTIKIWDTAS 1250

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 82.8 bits (203), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 24/227 (10%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HTD V  +A++ +  N LAS++AD  +K+WDV+ GKC  TL+ HT  V++VA++    Q 
Sbjct: 767 HTDWVRCVAFSPD-GNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADG-QT 824

Query: 325 LLSGSFDRSVVMKDAR----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 380
           L SGS DR++ + +      + T+ G        V S+A+ P ++   V    D TIK +
Sbjct: 825 LASGSGDRTIKIWNYHTGECLKTYIGH----TNSVYSIAYSPDSK-ILVSGSGDRTIKLW 879

Query: 381 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 440
           D +T              TLH H   VC+++++P     LA  S D+ V+LW+    Q  
Sbjct: 880 DCQTHICIK---------TLHGHTNEVCSVAFSP-DGQTLACVSLDQSVRLWNCRTGQ-- 927

Query: 441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487
           C+ +          VAFS D   +LA G +   +++WD  +   IS+
Sbjct: 928 CLKAWYGNTDWALPVAFSPDRQ-ILASGSNDKTVKLWDWQTGKYISS 973

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 29/205 (14%)

Query: 281  ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
            +LAS S D+ V++WD+++G+C  T + HT +V++V ++ +S  +L SGS D++V + D  
Sbjct: 920  MLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSL-MLASGSSDQTVRLWDIS 978

Query: 341  -------ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 393
                      H+G+ ++VA +++                 D T++ +DI         +S
Sbjct: 979  SGECLYIFQGHTGWVYSVAFNLDG--------SMLATGSGDQTVRLWDI---------SS 1021

Query: 394  QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 453
             Q  +    H   V ++ ++     +LA+GS D+ V+LWD+S+   +C+ +       V 
Sbjct: 1022 SQCFYIFQGHTSCVRSVVFSS-DGAMLASGSDDQTVRLWDISSG--NCLYTLQGHTSCVR 1078

Query: 454  SVAFSEDSPFVLAIGGSKGKLEIWD 478
            SV FS D   +LA GG    + +WD
Sbjct: 1079 SVVFSPDGA-MLASGGDDQIVRLWD 1102

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q54SD4|RBBD_DICDI Probable histone-binding protein rbbD OS=Dictyostelium discoideum GN=rbbD PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 31/225 (13%)

Query: 279 RNILASASADKQVKIWDVAA--------GKC--NLTLEHHTDKVQAVAWNHHSPQILLSG 328
            +I+A+ +   +V I+D           GKC  NL L  H  +   ++WN      LLS 
Sbjct: 134 HSIIATKTVSSEVYIFDTTKHPLEPTPDGKCSPNLKLTGHKKEGYGISWNPRKEGHLLSC 193

Query: 329 SFDRSVVMKDARISTHS-------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381
           S D+S+ M D   ++ S              + VE +AW    +  F    +D  +  +D
Sbjct: 194 SDDQSICMWDISAASKSDSTLDALNIYNGHTSIVEDVAWHYIHDTFFGSVGDDKKLMIWD 253

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN--NQP 439
            RT          +    + AH+  V  +S+NP    L+ATGSTDK V LWD+ N  N+ 
Sbjct: 254 TRTGT--------KPIHVVEAHNSEVNCLSFNPFCEFLVATGSTDKTVALWDMRNLGNRL 305

Query: 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484
             + S   +   VF V FS  +  VLA  GS  ++ +WD LS  G
Sbjct: 306 HSLISHTDE---VFQVQFSPHNETVLASCGSDRRVNVWD-LSRIG 346

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4WEI5|HAT2_ASPFU Histone acetyltransferase type B subunit 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=hat2 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 41/261 (15%)

Query: 250 SKKGKKSSIKY---KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD------VAAGK 300
           S K     IK+   +K  H   V    +  +  NI+A+   D +V +WD      +  G+
Sbjct: 119 SSKKAPMEIKFNIVQKIDHKGEVNKARYQPQNPNIIATMCTDGRVMVWDRSKHPSLPTGQ 178

Query: 301 CNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSV-------------VMKDARISTHS 345
            N  +E   HT +   ++W+ H+   L +GS D++V             ++K +R  TH 
Sbjct: 179 VNPQMELIGHTKEGFGLSWSPHTAGQLATGSEDKTVRIWDLTTYSKGNKLLKPSRTYTHH 238

Query: 346 GFKWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 403
               ++  DV+      H  HS ++    +D T++  DIR ++     T++ ++ T   H
Sbjct: 239 S---SIVNDVQY-----HPLHSSLIGTVSDDITLQILDIRESE-----TTRAAASTEGQH 285

Query: 404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 463
             A+  I++NP    +LATGS DK + LWDL N + + + S      +V S+++      
Sbjct: 286 RDAINAIAFNPAAETVLATGSADKTIGLWDLRNLK-TKLHSLESHTDSVTSISWHPFEEA 344

Query: 464 VLAIGGSKGKLEIWDTLSDAG 484
           VLA      K+  WD LS AG
Sbjct: 345 VLASASYDRKIAFWD-LSRAG 364

Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
255561012	493	WD-repeat protein, putative [Ricinus com	0.976	0.993	0.753	0.0
224103561	489	predicted protein [Populus trichocarpa]	0.964	0.989	0.744	0.0
225431285	493	PREDICTED: uncharacterized WD repeat-con	0.964	0.981	0.738	0.0
297735093	492	unnamed protein product [Vitis vinifera]	0.962	0.981	0.734	0.0
449517174	492	PREDICTED: uncharacterized WD repeat-con	0.976	0.995	0.672	0.0
449462697	493	PREDICTED: uncharacterized WD repeat-con	0.976	0.993	0.668	0.0
357495421	485	Periodic tryptophan protein-like protein	0.960	0.993	0.646	1e-179
363807774	477	uncharacterized protein LOC100800393 [Gl	0.934	0.983	0.650	1e-179
356551466	478	PREDICTED: uncharacterized WD repeat-con	0.942	0.989	0.649	1e-176
147840438	485	hypothetical protein VITISV_014600 [Viti	0.890	0.921	0.647	1e-172

>gi|255561012|ref|XP_002521518.1| WD-repeat protein, putative [Ricinus communis] gi|223539196|gb|EEF40789.1| WD-repeat protein, putative [Ricinus communis]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/499 (75%), Positives = 430/499 (86%), Gaps = 9/499 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAAVSWVPKG SK+VP  AEPPSKEEIEE+INSGAL+   ED  SE DDE+ME+ D +K
Sbjct: 1   MIAAVSWVPKGVSKSVPAVAEPPSKEEIEEMINSGALDRG-EDSGSEKDDENMEI-DNSK 58

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q+++  QA+AVA+ALG+  KS     KFDDIT+GLKELDMD+YD+ED+G+E+F  GLGDL
Sbjct: 59  QNNEVDQALAVADALGRAPKST---IKFDDITEGLKELDMDNYDEEDEGIELFSTGLGDL 115

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN+ DPYL D DDEDSEDLEDMTINP DAVIVCARNED+ SHLEV+I+EESD GD N
Sbjct: 116 YYPSNEADPYLNDNDDEDSEDLEDMTINPKDAVIVCARNEDEFSHLEVWIIEESDDGDSN 175

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +YVHH II+ AFPLC AWLDCPLK  EKGNF+AVGSMEP+IEIWDLD++DEVQP V+LGG
Sbjct: 176 MYVHHDIILSAFPLCTAWLDCPLKGAEKGNFIAVGSMEPSIEIWDLDIVDEVQPSVVLGG 235

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
           + E+KKKKK    KK+SIKYK+GSHTDSVLGLAWNK+FRNILASASADKQVKIWDVA GK
Sbjct: 236 VAEKKKKKKG---KKTSIKYKEGSHTDSVLGLAWNKQFRNILASASADKQVKIWDVATGK 292

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           C++T+EHHTDKVQAVAWN+H PQ+LLSGSFD SVV+KD RI TH GFKW V ADVESLAW
Sbjct: 293 CDITMEHHTDKVQAVAWNYHEPQVLLSGSFDHSVVLKDGRIPTHPGFKWYVTADVESLAW 352

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH  HSFVVSLEDGT++GFDIRTAK+D  S S + SFTLHAHDKAVCT+SYNP VPNLL
Sbjct: 353 DPHNTHSFVVSLEDGTVQGFDIRTAKTDSTSDS-KPSFTLHAHDKAVCTVSYNPSVPNLL 411

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGSTDKMVKLWDLSNNQPSC+AS++PKAG +FS++FSEDSPF LAIGGSKGKL++WD  
Sbjct: 412 ATGSTDKMVKLWDLSNNQPSCVASKDPKAGGIFSISFSEDSPFSLAIGGSKGKLQVWDIS 471

Query: 481 SDAGISNRFSKYSKPKKPQ 499
           SDAG+S RF   SK   P 
Sbjct: 472 SDAGVSRRFMNSSKQNGPH 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103561|ref|XP_002334041.1| predicted protein [Populus trichocarpa] gi|222839644|gb|EEE77967.1| predicted protein [Populus trichocarpa]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/489 (74%), Positives = 422/489 (86%), Gaps = 5/489 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAAVSWVPKG +K+VP  A+PPSKEEIEE+I +  LE   ED  SE+DD++M+V   AK
Sbjct: 1   MIAAVSWVPKGVAKSVPGVADPPSKEEIEELIKASDLERSGEDSGSEEDDQEMDV-GAAK 59

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q+ + SQA+AVANALG++SK   S TKFDDI DGLKELDMD+YDDE+DG+E+F  GLGDL
Sbjct: 60  QTGEVSQALAVANALGRSSKVNKSETKFDDIADGLKELDMDNYDDEEDGIELFSTGLGDL 119

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPY+KD+DD+DSEDLEDM I P DAVIVCA N+D+ S+LEV+IL+E+  GD N
Sbjct: 120 YYPSNSMDPYIKDEDDDDSEDLEDMAIKPKDAVIVCACNKDEFSNLEVWILDETSDGDSN 179

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +YVHH + + AFPLC AWLDCPLK  EKGNF+AVGSMEPAIEIWDLD+IDEVQP V+LGG
Sbjct: 180 IYVHHEVPLSAFPLCTAWLDCPLKGGEKGNFIAVGSMEPAIEIWDLDIIDEVQPAVVLGG 239

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
           I+E+KKKKK    KK SIKYK+GSHTDSVLGLAWNK FRNILASASADKQVKIWDV AGK
Sbjct: 240 IEEKKKKKKG---KKVSIKYKEGSHTDSVLGLAWNKHFRNILASASADKQVKIWDVDAGK 296

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           C++T+EHHTDKVQAVAWNHH PQ+LLSGSFDRSVVMKD R+ +  GFKW+V ADVESLAW
Sbjct: 297 CDITMEHHTDKVQAVAWNHHEPQVLLSGSFDRSVVMKDGRLPSDPGFKWSVTADVESLAW 356

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH +H FVVSLEDGT++GFDIR AKS   S+  + SFTLHAHDKAVCTISYNPL PNLL
Sbjct: 357 DPHDKHLFVVSLEDGTVQGFDIRAAKSG-SSSDLKPSFTLHAHDKAVCTISYNPLAPNLL 415

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGSTDKMVKLWDLSNNQPSC+ S+NPKAGA+FSV+FSED+PF+LAIGGSKG LE+WDTL
Sbjct: 416 ATGSTDKMVKLWDLSNNQPSCLVSKNPKAGAIFSVSFSEDNPFLLAIGGSKGTLELWDTL 475

Query: 481 SDAGISNRF 489
           S+A ++ RF
Sbjct: 476 SEAEVARRF 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431285|ref|XP_002275719.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Vitis vinifera]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/493 (73%), Positives = 421/493 (85%), Gaps = 9/493 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAA+SW+PKG SK+VP   EPPSKEEIEE++ +GALE    D  SE+DDE M+  D AK
Sbjct: 1   MIAAISWIPKGVSKSVPSVVEPPSKEEIEEMLKNGALER-CGDSESEEDDEIMDA-DAAK 58

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q D  + A+A A+ALGKT   KNSGT F DITDGLKELDMDHYDDEDDG+E+F KGLGD 
Sbjct: 59  QDDTVAHALAAADALGKT--PKNSGTSFLDITDGLKELDMDHYDDEDDGIEVFSKGLGDT 116

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPYLKD +D+DSE++EDMTI   D+VIVCARN DD+SHLEV+I EES+ GD N
Sbjct: 117 YYPSNDMDPYLKDNNDDDSEEVEDMTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSN 176

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +YVHH +IIPAFPLC AWLDCPLK  EKGNF+AVGSME +IEIWDLD+IDEVQP ++LGG
Sbjct: 177 MYVHHDVIIPAFPLCTAWLDCPLKGGEKGNFIAVGSMETSIEIWDLDIIDEVQPFLVLGG 236

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
           + E+KKKK      K+S+KY+KGSHTDSVLGLAWNKE+RNILASASADK VKIWDV +G+
Sbjct: 237 VAEKKKKKAK----KTSVKYRKGSHTDSVLGLAWNKEYRNILASASADKLVKIWDVTSGE 292

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           CN+T++HHTDKVQ VAWNHH PQ+LLSGSFDRSVVMKD RI TH+GFKW+V ADVESLAW
Sbjct: 293 CNITMDHHTDKVQVVAWNHHEPQVLLSGSFDRSVVMKDGRIPTHAGFKWSVTADVESLAW 352

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH  HSFVVSLEDGT++GFD+RTAKSD  S S+  +FTLHAHD+AVCTISYNPL PN L
Sbjct: 353 DPHTNHSFVVSLEDGTVQGFDVRTAKSDSASESKP-AFTLHAHDQAVCTISYNPLAPNFL 411

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGSTDKMVKLWDLSNNQPSC+A+RNPKAGAVFS++FSED PF+LAIGGS GKLE+WDTL
Sbjct: 412 ATGSTDKMVKLWDLSNNQPSCVATRNPKAGAVFSISFSEDRPFLLAIGGSTGKLEVWDTL 471

Query: 481 SDAGISNRFSKYS 493
           S+A +S +F  YS
Sbjct: 472 SEAPVSRKFGNYS 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735093|emb|CBI17455.3| unnamed protein product [Vitis vinifera]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/493 (73%), Positives = 419/493 (84%), Gaps = 10/493 (2%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAA+SW+PKG SK+VP   EPPSKEEIEE++ +GALE    D  SE+DDE M+  D AK
Sbjct: 1   MIAAISWIPKGVSKSVPSVVEPPSKEEIEEMLKNGALER-CGDSESEEDDEIMDA-DAAK 58

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q D  + A+A A+ALGKT   KNSGT F DITDGLKELDMDHYDDEDDG+E+F KGLGD 
Sbjct: 59  QDDTVAHALAAADALGKT--PKNSGTSFLDITDGLKELDMDHYDDEDDGIEVFSKGLGDT 116

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPYLKD +D+DSE++EDMTI   D+VIVCARN DD+SHLEV+I EES+ GD N
Sbjct: 117 YYPSNDMDPYLKDNNDDDSEEVEDMTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSN 176

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +YVHH +IIPAFPLC AWLDCPLK  EKGNF+AVGSME +IEIWDLD+IDEVQP ++LGG
Sbjct: 177 MYVHHDVIIPAFPLCTAWLDCPLKGGEKGNFIAVGSMETSIEIWDLDIIDEVQPFLVLGG 236

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
           + E+KKKK      K+S+KY+KGSHTDSVLGLAWNKE+RNILASASADK VKIWDV +G+
Sbjct: 237 VAEKKKKKAK----KTSVKYRKGSHTDSVLGLAWNKEYRNILASASADKLVKIWDVTSGE 292

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           CN+T++HHTDK   VAWNHH PQ+LLSGSFDRSVVMKD RI TH+GFKW+V ADVESLAW
Sbjct: 293 CNITMDHHTDKA-IVAWNHHEPQVLLSGSFDRSVVMKDGRIPTHAGFKWSVTADVESLAW 351

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH  HSFVVSLEDGT++GFD+RTAKSD  S S+  +FTLHAHD+AVCTISYNPL PN L
Sbjct: 352 DPHTNHSFVVSLEDGTVQGFDVRTAKSDSASESKP-AFTLHAHDQAVCTISYNPLAPNFL 410

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGSTDKMVKLWDLSNNQPSC+A+RNPKAGAVFS++FSED PF+LAIGGS GKLE+WDTL
Sbjct: 411 ATGSTDKMVKLWDLSNNQPSCVATRNPKAGAVFSISFSEDRPFLLAIGGSTGKLEVWDTL 470

Query: 481 SDAGISNRFSKYS 493
           S+A +S +F  YS
Sbjct: 471 SEAPVSRKFGNYS 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517174|ref|XP_004165621.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Cucumis sativus]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/497 (67%), Positives = 409/497 (82%), Gaps = 7/497 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDD-RSEDDDEDMEVEDEA 59
           MI+AVSWVPKG  K +P+ A+PPS+E I++++ S  +   +ED  +  DD+ D E  D  
Sbjct: 1   MISAVSWVPKGVCKPLPDLADPPSQETIDQLLKSNQV---VEDSSKHSDDEADEEDMDVE 57

Query: 60  KQSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGD 119
             +D+ + A+AVA ALGK+S+++N  TK+DDI + LKELDMD+YD+EDD +E+F  G GD
Sbjct: 58  DANDEIANALAVAQALGKSSETRNLETKYDDIAEELKELDMDNYDNEDDEIELFTSGAGD 117

Query: 120 LYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP 179
           +YY SN MDPYL+DKD +DSED+ED TI P DAVI+CA +ED+VS L+V+I E    GDP
Sbjct: 118 VYYPSNDMDPYLQDKDGDDSEDIEDETIKPTDAVIICACSEDNVSALQVWICEGYGAGDP 177

Query: 180 NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILG 239
           N Y+H  IIIPAFPLC AWLDCPLK  E+GNF+AVGSMEP+IEIWDLDVIDEVQP  +LG
Sbjct: 178 NFYIHRDIIIPAFPLCTAWLDCPLKGGERGNFIAVGSMEPSIEIWDLDVIDEVQPCAVLG 237

Query: 240 GIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299
           GI E+KKKKK    KK+S+ YK+ SHTDSVLGLAWNKEFRNILASASADKQVKIWDV+ G
Sbjct: 238 GIVEKKKKKKKG--KKTSVTYKENSHTDSVLGLAWNKEFRNILASASADKQVKIWDVSTG 295

Query: 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 359
           +CN+T++HH DKVQAVAWNHHS Q+LLSGSFD SVV+KD R  +HSG+KW V ADVE+LA
Sbjct: 296 QCNITMQHHIDKVQAVAWNHHSSQVLLSGSFDHSVVLKDGRNPSHSGYKWQVTADVENLA 355

Query: 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419
           WDPH EH FVVSLEDGT+KGFDIR A ++  S S ++SFTLHAH+KAVC++SY+P  PNL
Sbjct: 356 WDPHTEHMFVVSLEDGTVKGFDIRNATTESSSES-KASFTLHAHEKAVCSVSYSPSAPNL 414

Query: 420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
           LATGSTDKMVKLWDLSNN+PSC+AS NPKAGAVFSV+FSED PF+LAIGGSKGKLE+WDT
Sbjct: 415 LATGSTDKMVKLWDLSNNEPSCLASTNPKAGAVFSVSFSEDCPFLLAIGGSKGKLEVWDT 474

Query: 480 LSDAGISNRFSKYSKPK 496
           L+DA +S ++  YS+ +
Sbjct: 475 LTDAAVSRKYGNYSQQR 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462697|ref|XP_004149077.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Cucumis sativus]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/498 (66%), Positives = 409/498 (82%), Gaps = 8/498 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MI+AVSWVPKG  K +P+ A+PPS+E I++++ S  +   +ED     DDE  E + + +
Sbjct: 1   MISAVSWVPKGVCKPLPDLADPPSQETIDQLLKSNQV---VEDSSKHSDDEADEEDMDVE 57

Query: 61  QSDD--ASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLG 118
            ++D   + A+AVA ALGK+S+++N  TK+DDI + LKELDMD+YD+EDD +E+F  G G
Sbjct: 58  DANDEEIANALAVAQALGKSSETRNLETKYDDIAEELKELDMDNYDNEDDEIELFTSGAG 117

Query: 119 DLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD 178
           D+YY SN MDPYL+DKD +DSED+ED TI P DAVI+CA +ED+VS L+V+I E    GD
Sbjct: 118 DVYYPSNDMDPYLQDKDGDDSEDIEDETIKPTDAVIICACSEDNVSALQVWICEGYGVGD 177

Query: 179 PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 238
           PN Y+H  IIIPAFPLC AWLDCPLK  E+GNF+AVGSMEP+IEIWDLDVIDEVQP  +L
Sbjct: 178 PNFYIHRDIIIPAFPLCTAWLDCPLKGGERGNFIAVGSMEPSIEIWDLDVIDEVQPCAVL 237

Query: 239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298
           GGI E+KKKKK    KK+S+ YK+ SHTDSVLGLAWNKEFRNILASASADKQVKIWDV+ 
Sbjct: 238 GGIVEKKKKKKKG--KKTSVTYKENSHTDSVLGLAWNKEFRNILASASADKQVKIWDVST 295

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358
           G+CN+T++HH DKVQAVAWNHHS Q+LLSGSFD SVV+KD R  +HSG+KW V ADVE+L
Sbjct: 296 GQCNITMQHHIDKVQAVAWNHHSSQVLLSGSFDHSVVLKDGRNPSHSGYKWQVTADVENL 355

Query: 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418
           AWDPH EH FVVSLEDGT+KGFDIR A ++  S S ++SFTLHAH+KAVC++SY+P  PN
Sbjct: 356 AWDPHTEHMFVVSLEDGTVKGFDIRNATTESSSES-KASFTLHAHEKAVCSVSYSPSAPN 414

Query: 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           LLATGSTDKMVKLWDLSNN+PSC+AS NPKAGAVFSV+FSED PF+LAIGGSKGKLE+WD
Sbjct: 415 LLATGSTDKMVKLWDLSNNEPSCLASTNPKAGAVFSVSFSEDCPFLLAIGGSKGKLEVWD 474

Query: 479 TLSDAGISNRFSKYSKPK 496
           TL+DA +S ++  YS+ +
Sbjct: 475 TLTDAAVSRKYGNYSQQR 492

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495421|ref|XP_003617999.1| Periodic tryptophan protein-like protein [Medicago truncatula] gi|355519334|gb|AET00958.1| Periodic tryptophan protein-like protein [Medicago truncatula]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 325/503 (64%), Positives = 401/503 (79%), Gaps = 21/503 (4%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAA+SW+PKG SKA P  AEPPSK+EIEEII+         +  +   DED   ED  K
Sbjct: 1   MIAAISWIPKGVSKAEPVFAEPPSKDEIEEIIS---------NTLTSVGDEDENEEDANK 51

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDD-GVEIFGKGLGD 119
           Q+D+ + A+ VA A+GK S   +     DDI+D LK+L+MD+YD+EDD G E+F  G GD
Sbjct: 52  QNDEVAHALTVAGAIGKPSNGNS-----DDISDALKDLNMDNYDEEDDKGFELFSSGNGD 106

Query: 120 LYYASNQMDPYLKDKDDE-DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD 178
           L+Y SN++DPY+ DK++E DSED+EDM INP D+V+VCAR EDDV+ LEV+ILE+++  D
Sbjct: 107 LFYQSNELDPYINDKNEEYDSEDMEDMIINPTDSVVVCARTEDDVNFLEVWILEDANTRD 166

Query: 179 PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 238
            NLY+HH IIIP FPLC AWLDCPLK  EKGNF+AVGSM P+IEIWDLDVIDEV+P V+L
Sbjct: 167 MNLYIHHDIIIPEFPLCTAWLDCPLKGGEKGNFLAVGSMGPSIEIWDLDVIDEVEPCVVL 226

Query: 239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298
           G    ++K+KK K GKK S KYK+ SHTDSVLGLAWNKE+ N LASASADK+VKIWD+ A
Sbjct: 227 G---GKEKRKKGKNGKKKSAKYKEDSHTDSVLGLAWNKEYSNTLASASADKRVKIWDIVA 283

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358
           GKC +T++HH+DKVQAVAWNH + QILLSGSFD +V +KD R  +HSG+ W+V+ADVESL
Sbjct: 284 GKCTITMDHHSDKVQAVAWNHRAQQILLSGSFDHTVALKDVRTPSHSGYTWSVSADVESL 343

Query: 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418
           AWDPH EHSF VSLEDGTI+ FD+RTA S+  S  Q ++FTLHAHDK+V ++SYN   PN
Sbjct: 344 AWDPHTEHSFAVSLEDGTIQCFDVRTAMSNATSV-QNATFTLHAHDKSVTSVSYNTAAPN 402

Query: 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           LLATGS DK VKLWDLSNNQPS +AS+ PKAGAVFS++FSED+PF+LAIGGSKGKL++WD
Sbjct: 403 LLATGSMDKTVKLWDLSNNQPSSVASKEPKAGAVFSISFSEDNPFLLAIGGSKGKLQLWD 462

Query: 479 TLSDAGISNRFSKYSKPKKPQSV 501
           TLSD GIS R+ K+++  +PQSV
Sbjct: 463 TLSDEGISRRYGKFNR-NQPQSV 484

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807774|ref|NP_001242432.1| uncharacterized protein LOC100800393 [Glycine max] gi|255642317|gb|ACU21423.1| unknown [Glycine max]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/492 (65%), Positives = 391/492 (79%), Gaps = 23/492 (4%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MI+A+SWVPKG SK+ P  A+PP +EEI+EII S          +S D D ++   DE  
Sbjct: 1   MISAISWVPKGVSKSEPVVADPPPEEEIQEIIASHTT-------KSGDSDNEVANNDEV- 52

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
                +QA+ VA+A+GK S         D+IT  LK+LDMD YDDED+G+E+F  G+GDL
Sbjct: 53  ----VAQALNVADAVGKASTGS-----CDEITLALKDLDMDRYDDEDEGIEVFSSGIGDL 103

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPY+KDK+D+DS++LEDM INP D+VIV A  ED+VS+LEV ++E++D  + N
Sbjct: 104 YYPSNDMDPYIKDKNDDDSDELEDMIINPTDSVIVYACTEDEVSYLEVLVIEDADSSEMN 163

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +Y HH+IIIPAFPLC AWLDCPLK  E+ NF+AVGSMEP+IEIWDLDVIDEVQP V+LGG
Sbjct: 164 VYPHHNIIIPAFPLCTAWLDCPLKGGERRNFIAVGSMEPSIEIWDLDVIDEVQPCVVLGG 223

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
            +E+KKK K K  K         SHTDSVLGLAWNKE+RNILASA ADK+VKIWDV AGK
Sbjct: 224 FEEKKKKGKKKPIKYK-----DDSHTDSVLGLAWNKEYRNILASAGADKRVKIWDVVAGK 278

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           C++T+EHH+DKVQAVAWNHH+PQ+LLSGSFD +VV+KD R+ +HSG+KW+V ADVESLAW
Sbjct: 279 CDITMEHHSDKVQAVAWNHHAPQVLLSGSFDHTVVLKDGRMPSHSGYKWSVTADVESLAW 338

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           D H EHSFVVSLEDG +KGFDIRTA SD  S+   S+FTLHAHDKAV ++SYNP  PNLL
Sbjct: 339 DLHTEHSFVVSLEDGIVKGFDIRTANSD-SSSDLSSTFTLHAHDKAVTSVSYNPSAPNLL 397

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGS DK VKLWDLSNNQPSC+AS++P+AG +F ++FSED+PF+LAIGGSKGKL++WDTL
Sbjct: 398 ATGSMDKTVKLWDLSNNQPSCVASKSPRAGVIFKISFSEDNPFLLAIGGSKGKLQVWDTL 457

Query: 481 SDAGISNRFSKY 492
           SDAGIS R+  Y
Sbjct: 458 SDAGISRRYGNY 469

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551466|ref|XP_003544096.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Glycine max]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 322/496 (64%), Positives = 399/496 (80%), Gaps = 23/496 (4%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MI+A+SWVPKG SK         S+  + E      ++  I +  ++  D D E   +A 
Sbjct: 1   MISAISWVPKGVSK---------SELVVAEPPPEEEIQEIIANHATKSGDSDNE---DAN 48

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
             D  +QA+ VA+A+GK S    +GT  D+IT  LK+LDMD YDDED+G+E+F  G+GDL
Sbjct: 49  NDDVVAQALTVADAVGKAS----TGT-CDEITLALKDLDMDLYDDEDEGIEVFSSGIGDL 103

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPY+KDK+D+DSE+LEDM INP D+V+V A  ED+VS+LEV+++E++D  + N
Sbjct: 104 YYPSNDMDPYIKDKNDDDSEELEDMIINPTDSVVVYACTEDEVSYLEVWVIEDADSSEMN 163

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +Y HH+IIIPAFPLC AWLDCPLK  E+GNF+AVGSMEP+IEIWDLDVIDEVQP V+LGG
Sbjct: 164 MYPHHNIIIPAFPLCTAWLDCPLKGGERGNFIAVGSMEPSIEIWDLDVIDEVQPCVVLGG 223

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
            +E     + KKGKK SIKYK  SHTDSVLGLAWNKE+RNILASASADKQVKIWDV AGK
Sbjct: 224 FEE-----RKKKGKKKSIKYKDDSHTDSVLGLAWNKEYRNILASASADKQVKIWDVVAGK 278

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           C++T+EHH+DKVQAVAWNHH+PQ+LLSGSFD +VV++D R+ +HSG+KW+V ADVESLAW
Sbjct: 279 CDITMEHHSDKVQAVAWNHHAPQVLLSGSFDHTVVLRDGRMPSHSGYKWSVTADVESLAW 338

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH EHSFVVSLEDG +KGFDIRTA SD  S+   S+FTLHAHDKAV ++SYNP  PNLL
Sbjct: 339 DPHTEHSFVVSLEDGIVKGFDIRTANSD-SSSDPSSTFTLHAHDKAVTSVSYNPSAPNLL 397

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGS DK VKLWDLSNNQPSC+AS++P+AGA+F ++FSED+PF+LAIGGSKGKL++WDTL
Sbjct: 398 ATGSMDKTVKLWDLSNNQPSCVASKSPRAGAIFKISFSEDNPFLLAIGGSKGKLQVWDTL 457

Query: 481 SDAGISNRFSKYSKPK 496
           SD+GIS R+  Y+K +
Sbjct: 458 SDSGISRRYGNYNKNR 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840438|emb|CAN70683.1| hypothetical protein VITISV_014600 [Vitis vinifera]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 338/522 (64%), Positives = 392/522 (75%), Gaps = 75/522 (14%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAA+SW+PKG SK+VP   EPPSKEEIEE++ +GALE    D  SE+DDE M+  D AK
Sbjct: 1   MIAAISWIPKGVSKSVPSVVEPPSKEEIEEMLKNGALER-CGDSESEEDDEIMDA-DAAK 58

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q D  + A+A A+ALGKT K  NSGT F DITDGLKELDMDHYDDEDDG+E+F KGLGD 
Sbjct: 59  QDDTVAHALAAADALGKTPK--NSGTSFLDITDGLKELDMDHYDDEDDGIEVFSKGLGDT 116

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPYLKD +D+DSE++EDMTI   D+VIVCARN DD+SHLE             
Sbjct: 117 YYPSNDMDPYLKDNNDDDSEEVEDMTIKAEDSVIVCARNADDLSHLE------------- 163

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
                           AW           NF+AVGSME +IEIWDLD+IDEVQP ++LGG
Sbjct: 164 ----------------AW-----------NFIAVGSMETSIEIWDLDIIDEVQPFLVLGG 196

Query: 241 IDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299
           +  EKKKK SK+G+ +S+KY+KG SHTDSVLGLAWNKE+RNILASASADK VKIWDV +G
Sbjct: 197 V-AEKKKKXSKEGQLTSVKYRKGGSHTDSVLGLAWNKEYRNILASASADKLVKIWDVTSG 255

Query: 300 KCNLTLEHHTDK----------------------------VQAVAWNHHSPQILLSGSFD 331
           +CN+T++HHTDK                            VQAVAWNHH PQ+LLSGSFD
Sbjct: 256 ECNITMDHHTDKASVLQAHVEARFRARRLPNAXRRKKKKNVQAVAWNHHEPQVLLSGSFD 315

Query: 332 RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391
           RSVVMKD RI TH+GFKW+V ADVESLAWDPH  HSFVVSLEDGT++GFD+RTAKSD  S
Sbjct: 316 RSVVMKDGRIPTHAGFKWSVTADVESLAWDPHTNHSFVVSLEDGTVQGFDVRTAKSDSAS 375

Query: 392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451
            S+ + FTLHAHD+AVCTISYNPL PN LATGSTDKMVKLWDLSNNQPSC+A+RNPKAGA
Sbjct: 376 ESKPA-FTLHAHDQAVCTISYNPLAPNFLATGSTDKMVKLWDLSNNQPSCVATRNPKAGA 434

Query: 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493
           VFS++FSED PF+LAIGGS GKLE+WDTLS+A +S +F  YS
Sbjct: 435 VFSISFSEDRPFLLAIGGSTGKLEVWDTLSEAXVSRKFGNYS 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
TAIR|locus:2117169	461	AT4G18900 "AT4G18900" [Arabido	0.780	0.850	0.560	4e-122
TAIR|locus:2122133	433	AT4G35370 "AT4G35370" [Arabido	0.400	0.464	0.639	8.1e-106
UNIPROTKB|G4MTU3	551	MGG_04802 "Periodic tryptophan	0.750	0.684	0.420	5.1e-81
ASPGD|ASPL0000062261	535	AN0310 [Emericella nidulans (t	0.745	0.699	0.405	5e-76
DICTYBASE|DDB_G0275073	569	pwp1 "periodic tryptophan prot	0.762	0.673	0.363	2.6e-69
POMBASE|SPBC1711.16	516	SPBC1711.16 "WD repeat protein	0.717	0.697	0.367	3.1e-67
MGI|MGI:1914735	501	Pwp1 "PWP1 homolog (S. cerevis	0.721	0.722	0.352	1.6e-61
UNIPROTKB|Q13610	501	PWP1 "Periodic tryptophan prot	0.721	0.722	0.352	2.7e-61
UNIPROTKB|Q2HJ56	500	PWP1 "Periodic tryptophan prot	0.721	0.724	0.352	4.3e-61
ZFIN|ZDB-GENE-040426-1049	490	pwp1 "PWP1 homolog (S. cerevis	0.713	0.730	0.370	9e-61

TAIR|locus:2117169 AT4G18900 "AT4G18900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 230/410 (56%), Positives = 291/410 (70%)

Query:    89 DDITDGLKELXXXXXXXXXXGVEIFGKGLGDLYYASNQMDPYXXXXXXXXXXXXXXMTIN 148
             D++ +GLKEL          G+EIF  G GDLYY SN+MDPY                I 
Sbjct:    67 DEVAEGLKELDMDNYDEEDDGIEIFSSGRGDLYYKSNEMDPYLKRNDDHDDDSDDDPPIL 126

Query:   149 PNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 207
             P D VIVCA  +D + + L+VY+ E++  G PN+Y HH+ IIPA PLC AWLDCPLK  E
Sbjct:   127 PTDLVIVCAMTDDKEANRLDVYVSEDTSHGSPNMYNHHYRIIPAIPLCTAWLDCPLKGGE 186

Query:   208 KGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHT 266
             +GNF+AVGS   P IEIWDLD   ++ P V LGG ++E                    HT
Sbjct:   187 RGNFLAVGSDGTPTIEIWDLDAWFDMLPCVQLGGQNKEGNYKQGS-------------HT 233

Query:   267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL 326
              SVLGLAWNKEFRNILASASADK+VK+WDVA G C +T+EHHT +VQAVAWNH++P++LL
Sbjct:   234 RSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEVLL 293

Query:   327 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
             SGSFD++VV+KD R  +HSGFKW+V +DVESLAWDPH+EHSFVVSLEDGT+KGFD+R A 
Sbjct:   294 SGSFDQTVVLKDGRQPSHSGFKWSVMSDVESLAWDPHSEHSFVVSLEDGTVKGFDVRQAS 353

Query:   387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446
                 ++    SFT++ HD+A  ++SYN   PNLLATGS D+ VKLWDLSNN+PSCIA+ N
Sbjct:   354 IS--ASESNPSFTINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEPSCIATHN 411

Query:   447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF-SKYSKP 495
             P AG +F +AFS D+PF+LA+GG  G+L++WDTLSD  +S+R+ S+  +P
Sbjct:   412 PNAGGLFFIAFSPDNPFLLAMGGVMGELKLWDTLSDTNVSSRYGSREVRP 461

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122133 AT4G35370 "AT4G35370" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 8.1e-106, Sum P(3) = 8.1e-106
 Identities = 133/208 (63%), Positives = 161/208 (77%)

Query:   265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
             HT  V+ LAWNKEFRNI+AS S DK+VK+WDVA GKC +T+EHH  KV AVAWN+++P++
Sbjct:   215 HTGPVIDLAWNKEFRNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEV 274

Query:   325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
             LLSGS DR+VV+KD R  ++SG KW+  A VE LAWDPH+EHSFVVSL+DGT+KGFD R 
Sbjct:   275 LLSGSRDRTVVLKDGRDPSNSGLKWSTEAKVEKLAWDPHSEHSFVVSLKDGTVKGFDTRA 334

Query:   385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
             +   P       SF +HAHD  V +ISYN   PNLLATGS D+ VKLWDLSNNQPS IA+
Sbjct:   335 SDLSP-------SFIIHAHDSEVSSISYNIHAPNLLATGSADESVKLWDLSNNQPSWIAT 387

Query:   445 RNPKAGAVFSVAFSEDSPFVLAIGGSKG 472
               P AG VFSV+FS D PF+LA+GGS+G
Sbjct:   388 NKPNAGEVFSVSFSADCPFLLAVGGSEG 415

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MTU3 MGG_04802 "Periodic tryptophan protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 789 (282.8 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 165/392 (42%), Positives = 235/392 (59%)

Query:   109 GVEIFGKGLGDLYYASNQMDPYXXXXXXXXXXXXXX---MTINPNDAVIVCARNEDDVSH 165
             G+ IFG      YY +N+ DPY                 + I   D +++ A+ ED+++H
Sbjct:   113 GMGIFGNVKSLAYYENNEDDPYITLKEGKTGEDDDDREDLQILATDNLLLAAKVEDELAH 172

Query:   166 LEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL--KDREK---GNFMAVGSMEPA 220
             LEVY+ E  D  D NLYVHH I++PA PLC+ WLD  +  KD  K    NF+A+G+M+P 
Sbjct:   173 LEVYVYE--DAAD-NLYVHHDIMLPAIPLCVEWLDIAVEKKDTPKDAAANFVAIGTMDPD 229

Query:   221 IEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRN 280
             IEIWDLD ID + P+ ILG                         H D+VL LA N++ RN
Sbjct:   230 IEIWDLDTIDCMYPNAILGQGSNADEASGKKKKKKKSKKVNDEFHVDAVLALAANRKHRN 289

Query:   281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
             +LASASADK VK+WD+   KC  + ++HTDKV +VAW+     +LLSGS+DR++V  D R
Sbjct:   290 LLASASADKTVKLWDLNTTKCAKSYKYHTDKVCSVAWHPVESTVLLSGSYDRTIVAADMR 349

Query:   341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 400
                    +W V +DVE++ WDPH  + F VS E+G I  +D+R A SDP +TS+ +++TL
Sbjct:   350 APDAKVPRWGVESDVENVRWDPHDPNFFFVSTENGLIHYYDVRNAPSDP-ATSK-ATWTL 407

Query:   401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 460
              AHD+++ +   NP++P  + TGSTDK VKLW++  + PS I SRN   G VFS +F+ D
Sbjct:   408 QAHDESISSFDINPVIPGFMVTGSTDKTVKLWNIQESGPSMIVSRNLDVGKVFSTSFAPD 467

Query:   461 SP--FVLAIGGSKGKLEIWDTLSDAGISNRFS 490
             +   F L++ GSKG + +WDT ++  I   F+
Sbjct:   468 AEVGFRLSVAGSKGTVTVWDTSTNPAIRRAFA 499

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000062261 AN0310 [Emericella nidulans (taxid:162425)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 157/387 (40%), Positives = 226/387 (58%)

Query:   110 VEIFGKGLGDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVY 169
             + +FG      Y+  N+ DPY              + I P D +++  + ED+V+HLEVY
Sbjct:   107 ITMFGNVKSLAYHQPNEEDPYLVVPEDEEDEEREELQILPTDNLLLAGKVEDEVAHLEVY 166

Query:   170 ILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL-KDREKG----NFMAVGSMEPAIEIW 224
             + E  D  D NLYVHH I++PA PLC+ WLD P+ K  E G    NF+AVG+MEP IE+W
Sbjct:   167 VYE--DEAD-NLYVHHDIMLPAIPLCLEWLDFPVGKSGENGGATGNFVAVGTMEPDIEVW 223

Query:   225 DLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILAS 284
             DLDV+D + P+ ILG    +                    H DSVL LA N++ RN+LAS
Sbjct:   224 DLDVVDSMYPNAILGQGGADADTDAKKPRKKKKVKANDEFHVDSVLALAANRQHRNLLAS 283

Query:   285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344
              SAD+ VK+WD+   K   +  HHTDKV ++ W+     +LL+GS+DR++V  D R +  
Sbjct:   284 GSADRTVKLWDLNTAKSAKSYTHHTDKVCSLDWHPKESTVLLTGSYDRTIVAADMR-APD 342

Query:   345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 404
             S  +W V ADVE++ WD H  + F  + + G +  +DIR   + P  +  +  ++L AHD
Sbjct:   343 SKARWGVDADVENVRWDIHDPNYFYATTDAGMVYRYDIRNVPATPKDS--KPVWSLQAHD 400

Query:   405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-- 462
              +V +   NP +P  LATGSTDK VKLW++ N++PS + SR  + G VFS  F+ D+   
Sbjct:   401 SSVSSFDINPAIPGFLATGSTDKQVKLWNVENDKPSMVVSRKLEVGKVFSTTFAPDAEVG 460

Query:   463 FVLAIGGSKGKLEIWDTLSDAGISNRF 489
             F LA+ GSKG ++IWDT ++A +   F
Sbjct:   461 FRLAVAGSKGTVQIWDTSTNAAVRRAF 487

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

DICTYBASE|DDB_G0275073 pwp1 "periodic tryptophan protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 677 (243.4 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
 Identities = 147/404 (36%), Positives = 218/404 (53%)

Query:   109 GVEIFGKGL-GDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCA--RNEDDVSH 165
             G++   + + G ++Y     DPY              + I P D+++V A    EDD SH
Sbjct:   101 GLKFINRAMKGLMFYKDTDSDPYLTNKEEEDIEDIEDVIIRPTDSILVSAIVTGEDDYSH 160

Query:   166 LEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIW 224
             L++ + EE      NLYVHH II+ ++PL +AW+D  P+  +EKG+FMAVG+ EP+IEIW
Sbjct:   161 LDIMVYEEECD---NLYVHHDIILSSYPLALAWMDQNPINPQEKGSFMAVGTFEPSIEIW 217

Query:   225 DLDVIDEVQPHVILGGIDEEXXXX----XXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRN 280
             DLDV+D + P VILGG +E+                        H D V+ L+WN   RN
Sbjct:   218 DLDVVDNLIPTVILGGKEEDSADPMKKPSAKKRGGKHNKFKEGSHRDGVMSLSWNSHQRN 277

Query:   281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
             +LAS S+D  VK+WD+   +C  T  HH DKV  + WN H    LL GS D+ V + D R
Sbjct:   278 VLASGSSDNTVKVWDITTQQCLNTFTHHKDKVSCLHWNSHEKTALLIGSHDKHVSILDVR 337

Query:   341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 400
              +  S +KW+V  +VESL+W+PH    F+V  +DG +  +D     +     S Q+S   
Sbjct:   338 -APDSAYKWSVKGEVESLSWNPHNPKEFIVGTDDGRLLCYDATLGTAAAPVWSVQAS--- 393

Query:   401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL--SNNQPSCIASRNPKAGAVFSVAFS 458
                  +V   SY P      ATGS+D  VKLW+L  S+N+P+ I S+N     +F+++F 
Sbjct:   394 --QKGSVSCFSYCPGQVGFFATGSSDHTVKLWNLETSSNKPTLIESKN-LGQEIFTLSFF 450

Query:   459 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI 502
             E+SPF+LA+G    +  + DT     + N F   ++P+  +  +
Sbjct:   451 ENSPFLLAVGSETQRPNVIDTKRFISVQNSFG-IARPENSKEPV 493

GO:0003674 "molecular_function" evidence=ND

GO:0006364 "rRNA processing" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

POMBASE|SPBC1711.16 SPBC1711.16 "WD repeat protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 141/384 (36%), Positives = 217/384 (56%)

Query:   112 IFGKGLGDLYYASNQMDPYXXXX-XXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVYI 170
             +F    G  Y+ + + DPY               M I P D++++ AR ED++SH+EVY+
Sbjct:   105 MFSNIRGLAYHENGEKDPYITIDPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYV 164

Query:   171 LEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL--KDREKGNFMAVGSMEPAIEIWDLDV 228
              E ++    NLYVHH  ++P FPLC+ WLD  +   D   GN++AVG+ +P IEIWDLD+
Sbjct:   165 YEPTE---ENLYVHHDFLLPTFPLCLEWLDYKVGTSDNAPGNYVAVGTFDPEIEIWDLDI 221

Query:   229 IDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASAD 288
             ID V P  +LG                         HTD+VL L+ N+   N+L S SAD
Sbjct:   222 IDAVYPAAVLGA-----GASQVNKKKKKSKKINDSYHTDAVLALSSNRNAHNLLVSGSAD 276

Query:   289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGF 347
               +K+WD++   C  +  +H+DKV  + W   +P +LLSGS+D++  + D R+    S F
Sbjct:   277 TTLKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSF 336

Query:   348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407
             +  V +DVE++AWD H+E++F +  ++G +   D R           +S + L AHD  +
Sbjct:   337 Q--VTSDVENVAWDQHSENNFFIGTDNGIVYYCDARNLS--------KSVWQLQAHDGPI 386

Query:   408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED--SPFVL 465
               +S NP VP+ +ATGSTD++VKLW+ S++ P  + SR+   G VF+ +F+ D  + F L
Sbjct:   387 SCLSVNPSVPSFVATGSTDRVVKLWNTSDSSPKMVVSRDLDVGRVFTCSFTTDESTAFHL 446

Query:   466 AIGGSKGKLEIWDTLSDAGISNRF 489
             A  GSKG + +WDT ++ G+   F
Sbjct:   447 AASGSKGVVRVWDTATNPGVRKAF 470

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0043234 "protein complex" evidence=NAS

MGI|MGI:1914735 Pwp1 "PWP1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 135/383 (35%), Positives = 203/383 (53%)

Query:   111 EIFGKGL-GDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVY 169
             E  G+ L G   Y SN  DPY              + I P D +IVC R E +  +LEV+
Sbjct:   108 ETIGESLLGLTVYGSNDQDPYVTLKDTEQYEHEDFL-IKPTDNLIVCGRAEQEQCNLEVH 166

Query:   170 ILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDV 228
             +  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD+
Sbjct:   167 VYNQEE---ESFYVHHDILLSAYPLSVEWLNFDPSPDASTGNYIAVGNMTPVIEVWDLDI 223

Query:   229 IDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASAD 288
             +D ++P   LG                         HTD+VL L+WNK  RN+LASASAD
Sbjct:   224 VDSLEPVFTLGS------KLSKKKKKKGKKSSSAEGHTDAVLDLSWNKTVRNVLASASAD 277

Query:   289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 348
               V +WD++ GK    L  HTDKVQ + ++    Q L+SGS+D+SV + D R  + +  +
Sbjct:   278 STVVLWDLSVGKSVARLTAHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRDPSQNHRQ 337

Query:   349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
             W  +  +E + W+  +   F+ S +DG +   D   A+SD      +  FTL+AH+  + 
Sbjct:   338 WRFSGQIERVTWNHFSPCHFLASTDDGFVYNLD---ARSD------KPIFTLNAHNDEIS 388

Query:   409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
              +  +  +   L T S DK VK+WD+  ++PS I SR+ K G +F  +   D PFV A G
Sbjct:   389 GLDLSSQIKGCLVTASADKFVKIWDILGDRPSLIHSRDMKMGVLFCSSCCPDLPFVYAFG 448

Query:   469 GSKGKLEIWDTLSDAGISNRFSK 491
             G K  L +WD  + + ++  F +
Sbjct:   449 GQKEGLRVWDISTVSSVNEAFGR 471

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q13610 PWP1 "Periodic tryptophan protein 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 135/383 (35%), Positives = 203/383 (53%)

Query:   111 EIFGKGL-GDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVY 169
             E  G+ L G   Y SN  DPY              + I P+D +IVC R E D  +LEV+
Sbjct:   109 ETLGESLLGLTVYGSNDQDPYVTLKDTEQYEREDFL-IKPSDNLIVCGRAEQDQCNLEVH 167

Query:   170 ILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDV 228
             +  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD+
Sbjct:   168 VYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDI 224

Query:   229 IDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASAD 288
             +D ++P   LG                         HTD+VL L+WNK  RN+LASASAD
Sbjct:   225 VDSLEPVFTLGS------KLSKKKKKKGKKSSSAEGHTDAVLDLSWNKLIRNVLASASAD 278

Query:   289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 348
               V +WD++ GK   +L  HTDKVQ + ++    Q L+SGS+D+SV + D R    S   
Sbjct:   279 NTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPDESHRM 338

Query:   349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
             W  +  +E + W+  +   F+ S +DG +   D   A+SD      +  FTL+AH+  + 
Sbjct:   339 WRFSGQIERVTWNHFSPCHFLASTDDGFVYNLD---ARSD------KPIFTLNAHNDEIS 389

Query:   409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
              +  +  +   L T S DK VK+WD+  ++PS + SR+ K G +F  +   D PF+ A G
Sbjct:   390 GLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFG 449

Query:   469 GSKGKLEIWDTLSDAGISNRFSK 491
             G K  L +WD  + + ++  F +
Sbjct:   450 GQKEGLRVWDISTVSSVNEAFGR 472

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q2HJ56 PWP1 "Periodic tryptophan protein 1 homolog" [Bos taurus (taxid:9913)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 135/383 (35%), Positives = 203/383 (53%)

Query:   111 EIFGKGL-GDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVY 169
             E  G+ L G   Y SN  DPY              + I P+D +IVC R E D  +LEV+
Sbjct:   108 ETLGESLLGLTVYGSNDQDPYVTLKDTEQYEREDFL-IKPSDNLIVCGRAEQDQCNLEVH 166

Query:   170 ILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDV 228
             +  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD+
Sbjct:   167 VYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDI 223

Query:   229 IDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASAD 288
             +D ++P   LG                         HTD+VL L+WNK  RN+LASASAD
Sbjct:   224 VDSLEPVFTLGS------KLSKKKKKKGKKNSSADGHTDAVLDLSWNKLVRNVLASASAD 277

Query:   289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 348
               V +WD++ GK   +L  HTDKVQ + ++    Q L+SGS+D+SV + D R    S   
Sbjct:   278 NTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPEESHRM 337

Query:   349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
             W  +  +E + W+  +   F+ S +DG +   D   A+SD      +  FTL+AH+  + 
Sbjct:   338 WRFSGQIERVTWNHFSPCHFLASTDDGFVYNLD---ARSD------KPIFTLNAHNDEIS 388

Query:   409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
              +  +  +   L T S DK VK+WD+  ++PS + SR+ K G +F  +   D PF+ A G
Sbjct:   389 GLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFG 448

Query:   469 GSKGKLEIWDTLSDAGISNRFSK 491
             G K  L +WD  + + ++  F +
Sbjct:   449 GQKEGLRVWDISTVSSVNEAFGR 471

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1049 pwp1 "PWP1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 140/378 (37%), Positives = 203/378 (53%)

Query:   114 GKGLGDL-YYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVYILE 172
             G  L  L  + +N+ DPY                I P D +I+  R E +  +LE+++  
Sbjct:   109 GDSLAGLTVFGTNEEDPYVTIKDTDQYEREDFQ-IKPTDNLILAGRAEKECCNLEIHVYN 167

Query:   173 ESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDE 231
               +    +LYVHH I++PA+PLC+ WL+  P  + ++GN+ AVG+M P I++WDLDV+D 
Sbjct:   168 SEED---SLYVHHDILLPAYPLCVEWLNFDPNPEEQQGNYAAVGNMTPVIDVWDLDVVDC 224

Query:   232 VQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASADKQV 291
             ++P   LG   E+                    HTD+VL L+WN+  RN+LASASAD+ V
Sbjct:   225 LEPAFSLGSKKEKKKKKKAKKAAEPIEG-----HTDAVLDLSWNRLVRNVLASASADETV 279

Query:   292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 351
              +WD+  GK   TL  HTDKVQ + ++    Q L+SGSFD+SV++ D R    S   W  
Sbjct:   280 ILWDLEKGKPAATLAKHTDKVQTLKFHPFEAQTLISGSFDKSVILYDCRSPDDSHRIWRF 339

Query:   352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 411
             +  VE + WD  +  +F+ S EDG I   D   A+SD      +  FTL AHD  V  + 
Sbjct:   340 SGQVERVTWDHFSPCNFLASTEDGFIYCLD---ARSD------KPVFTLRAHDGEVSGMD 390

Query:   412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
              +  +   L T S DK VK+WD+  N+P+ I SR+ K G +F  +   D PFV A GG +
Sbjct:   391 LSSQIRGCLVTCSADKHVKIWDILGNKPNLIHSRDMKMGVLFCGSCCPDLPFVYAFGGQR 450

Query:   472 GKLEIWDTLSDAGISNRF 489
               L +WD    A ++  F
Sbjct:   451 EGLRVWDISDVAAVAEVF 468

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P775	YBEG_SCHPO	No assigned EC number	0.3525	0.9063	0.8817	yes	no
Q99LL5	PWP1_MOUSE	No assigned EC number	0.3512	0.9163	0.9181	yes	no
P21304	PWP1_YEAST	No assigned EC number	0.3271	0.9243	0.8055	yes	no
Q13610	PWP1_HUMAN	No assigned EC number	0.3466	0.9223	0.9241	yes	no
Q2HJ56	PWP1_BOVIN	No assigned EC number	0.3527	0.9203	0.924	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_9650001	hypothetical protein (489 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.632
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•	•		•		0.618
	gw1.I.4832.1	hypothetical protein (422 aa)				•					0.612
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.610
	eugene3.00640202	hypothetical protein (1181 aa)				•					0.582
	gw1.X.2964.1	hypothetical protein (516 aa)				•					0.568
	grail3.0001095301	hypothetical protein (414 aa)				•			•	•	0.559
	gw1.86.17.1	hypothetical protein (573 aa)				•			•		0.545
	estExt_fgenesh4_pm.C_280108	hypothetical protein (960 aa)				•				•	0.541
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•					0.528

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	502
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	3e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-10
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	9e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  124 bits (314), Expect = 3e-32
 Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 24/224 (10%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 323
            HT  V  +A++ +   +LA+ S D  +K+WD+  G+   TL+ HT  V+ VA +     
Sbjct: 7   GHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 324 ILLSGSFDRSV----VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
            L SGS D+++    +     + T +G      + V S+A+ P        S  D TIK 
Sbjct: 66  -LASGSSDKTIRLWDLETGECVRTLTGHT----SYVSSVAFSPD-GRILSSSSRDKTIKV 119

Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439
           +D+ T K            TL  H   V +++++P     +A+ S D  +KLWDL     
Sbjct: 120 WDVETGK---------CLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTG-- 167

Query: 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483
            C+A+     G V SVAFS D    L    S G +++WD  +  
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK 210

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  117 bits (294), Expect = 1e-29
 Identities = 80/274 (29%), Positives = 127/274 (46%), Gaps = 51/274 (18%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
           G ++A GS +  I +WDL+         + G                         HT  
Sbjct: 63  GTYLASGSSDKTIRLWDLE--TGECVRTLTG-------------------------HTSY 95

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
           V  +A++ +   IL+S+S DK +K+WDV  GKC  TL  HTD V +VA+       + S 
Sbjct: 96  VSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF-SPDGTFVASS 153

Query: 329 SFDRSVVMKDAR----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
           S D ++ + D R    ++T +G       +V S+A+ P      + S  DGTIK +D+ T
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHT----GEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST 208

Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
                     +   TL  H+  V +++++P    LLA+GS D  +++WDL   +     S
Sbjct: 209 ---------GKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
            +    +V S+A+S D    LA G + G + IWD
Sbjct: 259 GHT--NSVTSLAWSPDGKR-LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  116 bits (293), Expect = 2e-29
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 71/309 (22%)

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           L  H   +      C+A+          G  +A GS +  I++WDL              
Sbjct: 5   LKGHTGGV-----TCVAFSPD-------GKLLATGSGDGTIKVWDL-------------- 38

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
             E  +  ++ KG           HT  V  +A +      LAS S+DK +++WD+  G+
Sbjct: 39  --ETGELLRTLKG-----------HTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGE 84

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-------ISTHSGFKWAVAA 353
           C  TL  HT  V +VA+     +IL S S D+++ + D         +  H+        
Sbjct: 85  CVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD------- 136

Query: 354 DVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412
            V S+A+ P    +FV  S +DGTIK +D+RT K            TL  H   V ++++
Sbjct: 137 WVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKC------VA---TLTGHTGEVNSVAF 185

Query: 413 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472
           +P     L + S+D  +KLWDLS     C+ +       V SVAFS D   + + G   G
Sbjct: 186 SP-DGEKLLSSSSDGTIKLWDLST--GKCLGTLRGHENGVNSVAFSPDGYLLAS-GSEDG 241

Query: 473 KLEIWDTLS 481
            + +WD  +
Sbjct: 242 TIRVWDLRT 250

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  109 bits (273), Expect = 8e-26
 Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 10/261 (3%)

Query: 222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281
            +  L +       ++L     +   K         +      H++SV  LA++ + + +
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
            + +S D  +K+WD+  GK   TL  HTD V ++A++     ++ SGS D ++ + D   
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401
                   +  +D    ++ P           DGTI+ +D+R        +S     TL 
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSPD-GSLLASGSSDGTIRLWDLR--------SSSSLLRTLS 281

Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 461
            H  +V +++++P    LLA+GS+D  V+LWDL   +     +     G V S++FS D 
Sbjct: 282 GHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340

Query: 462 PFVLAIGGSKGKLEIWDTLSD 482
             +++ G   G + +WD  + 
Sbjct: 341 SLLVSGGSDDGTIRLWDLRTG 361

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.8 bits (208), Expect = 1e-17
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 16/229 (6%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSP 322
            HTD V  LA++ +   ++AS S+D  +++WD++ GK    TL  H+D    V+      
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SVVSSFSPDG 253

Query: 323 QILLSGSFDRSVVMKDARISTHSGFKWAVAAD-VESLAWDPHAEHSFVVSLEDGTIKGFD 381
            +L SGS D ++ + D R S+      +  +  V S+A+ P  +        DGT++ +D
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWD 312

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441
           + T K         SS TL  H+  V ++S++P    L++ GS D  ++LWDL   +P  
Sbjct: 313 LETGKL-------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL- 364

Query: 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490
                     V SV+FS D   V++ G + G + +WD  + + + N   
Sbjct: 365 --KTLEGHSNVLSVSFSPDG-RVVSSGSTDGTVRLWDLSTGSLLRNLDG 410

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 24/257 (9%)

Query: 243 EEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 302
             + K K  K  +        S            E   +L +  +D  V + D++    +
Sbjct: 8   SSENKSKLLKKSELGPSLNSLSLLSLGSS-----ESGILLLALLSDSLVSLPDLS----S 58

Query: 303 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW 360
           L L  H D + ++A++    ++LLSGS D ++ + D           +    + V  LA 
Sbjct: 59  LLLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 361 DPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418
                +S +++    DGT+K +D+        ST  +   TL  H ++V +++++P    
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDL--------STPGKLIRTLEGHSESVTSLAFSPDGKL 169

Query: 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           L +  S D  +KLWDL       +++       V S+AFS D   ++A G S G + +WD
Sbjct: 170 LASGSSLDGTIKLWDLR--TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 479 TLSDAGISNRFSKYSKP 495
             +   + +  S +S  
Sbjct: 228 LSTGKLLRSTLSGHSDS 244

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 61.9 bits (150), Expect = 3e-10
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 25/229 (10%)

Query: 258 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--------LEHHT 309
           IK K   HT S+L L +N  F  ILAS S D  +++W++     ++         L+ H 
Sbjct: 68  IKLK--GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125

Query: 310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 369
            K+  + WN  +  I+ S  FD  V + D   +    F+  +   + SL W+        
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQINMPKKLSSLKWNIKG----- 179

Query: 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN---LLATG-ST 425
            +L  GT  G  +     DP      SSF +H   K    I  + L  +   +L+TG S 
Sbjct: 180 -NLLSGTCVGKHMHII--DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK 236

Query: 426 DKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472
           + M  +KLWDL N   + +      A A     + E +  +  IG   G
Sbjct: 237 NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.5 bits (145), Expect = 9e-10
 Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 41/240 (17%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
           G+ +A GS +  I +WDL           L G                        H+ S
Sbjct: 253 GSLLASGSSDGTIRLWDLR--SSSSLLRTLSG------------------------HSSS 286

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILL 326
           VL +A++ +   +LAS S+D  V++WD+  GK    LTL+ H   V +++++     ++ 
Sbjct: 287 VLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345

Query: 327 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
            GS D ++ + D R            ++V S+++ P        S  DGT++ +D+ T  
Sbjct: 346 GGSDDGTIRLWDLRTGKPL-KTLEGHSNVLSVSFSPDGRVVSSGS-TDGTVRLWDLSTGS 403

Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446
                        L  H   V ++ ++P     LA+GS+D  ++LWDL  +  S   S +
Sbjct: 404 LLR---------NLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 55.9 bits (134), Expect = 4e-08
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF 330
           G+ WN   ++ +AS++ +  V++WDVA  +    ++ H  +V ++ ++   P +L SGS 
Sbjct: 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596

Query: 331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 390
           D SV +         G      A++  + +   +  S      D  +  +D+R  K    
Sbjct: 597 DGSVKLWSINQGVSIG-TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--- 652

Query: 391 STSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKLWDLS 435
                   T+  H K   T+SY   V  + L + STD  +KLWDLS
Sbjct: 653 -----PLCTMIGHSK---TVSYVRFVDSSTLVSSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
           +   TL  H   V +++++P   NLLA+GS D  V++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HT  V  ++++    N+LASA AD  V +WDV  GK    ++ H+D++ ++ WN     +
Sbjct: 124 HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SL 182

Query: 325 LLSGSFDRSVVMKDARIST 343
           L + S D+ + + D R  T
Sbjct: 183 LCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWD 295
           HT  V  +A++ +  N+LAS S D  V++WD
Sbjct: 10  HTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 393 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
           S +   TL  H   V +++++P     LA+GS D  +KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWD 295
           HT  V  +A++ +    LAS S D  +K+WD
Sbjct: 11  HTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----LHAHDKAVCT 409
            +  +A++P        + EDGTI G+ I      P+    Q+       L  H K V  
Sbjct: 77  PIIDVAFNPFDPQKLFTASEDGTIMGWGI------PEEGLTQNISDPIVHLQGHTKKVGI 130

Query: 410 ISYNPLVPNLLATGSTDKMVKLWDL 434
           +S++P   N+LA+   D +V +WD+
Sbjct: 131 VSFHPSAMNVLASAGADMVVNVWDV 155

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
           G+   TL+ HT  V +VA++    + L SGS D ++
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTI 36

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
           GK   TL+ HT  V +VA++     +L SGS D +V
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTV 35

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	502
KOG0270	463	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
PTZ00421	493	coronin; Provisional	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG1188	376	consensus WD40 repeat protein [General function pr	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.82
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG2096	420	consensus WD40 repeat protein [General function pr	99.82
KOG2055	514	consensus WD40 repeat protein [General function pr	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
KOG1334	559	consensus WD40 repeat protein [General function pr	99.71
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.7
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.68
KOG1310	758	consensus WD40 repeat protein [General function pr	99.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.67
KOG2139	445	consensus WD40 repeat protein [General function pr	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.59
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.51
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.51
KOG1334	559	consensus WD40 repeat protein [General function pr	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.47
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.46
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.39
PRK00178	430	tolB translocation protein TolB; Provisional	99.37
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.37
KOG4547	541	consensus WD40 repeat-containing protein [General	99.36
PRK01029	428	tolB translocation protein TolB; Provisional	99.36
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.35
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.28
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.26
KOG2314	698	consensus Translation initiation factor 3, subunit	99.23
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.23
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.2
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.19
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.18
KOG2315	566	consensus Predicted translation initiation factor	99.18
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.16
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.16
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.15
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.15
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.12
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.1
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.1
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.1
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.09
KOG2314	698	consensus Translation initiation factor 3, subunit	99.05
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.04
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.0
PRK04043	419	tolB translocation protein TolB; Provisional	98.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.97
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.96
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.96
COG4946	668	Uncharacterized protein related to the periplasmic	98.93
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.93
KOG2695	425	consensus WD40 repeat protein [General function pr	98.9
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
COG4946	668	Uncharacterized protein related to the periplasmic	98.87
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.87
KOG2695	425	consensus WD40 repeat protein [General function pr	98.86
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.86
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.84
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.83
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.82
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.81
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.81
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.8
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.8
PRK04043	419	tolB translocation protein TolB; Provisional	98.79
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.76
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.71
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.7
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.66
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.66
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.62
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.61
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.58
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.55
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.54
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.52
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.52
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.52
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.48
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.48
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.45
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.44
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.37
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.36
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.33
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.33
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.33
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.28
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.27
KOG3621	726	consensus WD40 repeat-containing protein [General	98.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.17
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.17
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.15
PRK02888	635	nitrous-oxide reductase; Validated	98.11
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.09
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.0
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.0
KOG3621	726	consensus WD40 repeat-containing protein [General	97.98
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.97
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.85
COG3391	381	Uncharacterized conserved protein [Function unknow	97.85
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.85
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.83
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.81
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.79
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.78
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.75
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.74
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.73
KOG2444	238	consensus WD40 repeat protein [General function pr	97.71
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.7
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.7
KOG2395	644	consensus Protein involved in vacuole import and d	97.68
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.65
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.65
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.64
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.63
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.62
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.62
COG3391	381	Uncharacterized conserved protein [Function unknow	97.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.61
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.6
PRK02888	635	nitrous-oxide reductase; Validated	97.6
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.46
KOG2444	238	consensus WD40 repeat protein [General function pr	97.42
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.4
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.36
KOG2395	644	consensus Protein involved in vacuole import and d	97.35
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.25
PHA02713	557	hypothetical protein; Provisional	97.16
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.08
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.07
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.04
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.04
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.91
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.79
PHA02713	557	hypothetical protein; Provisional	96.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.77
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.77
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.74
KOG2247	615	consensus WD40 repeat-containing protein [General	96.71
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.67
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.65
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.63
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.62
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.55
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.54
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.35
PRK13616	591	lipoprotein LpqB; Provisional	96.32
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.29
PRK13616	591	lipoprotein LpqB; Provisional	96.2
PHA03098	534	kelch-like protein; Provisional	96.2
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.18
PRK10115	686	protease 2; Provisional	95.99
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.98
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.94
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.92
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.89
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.87
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.81
PHA03098	534	kelch-like protein; Provisional	95.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.65
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.64
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.59
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	95.57
PHA02790	480	Kelch-like protein; Provisional	95.53
PRK10115	686	protease 2; Provisional	95.42
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.29
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.2
COG5276	370	Uncharacterized conserved protein [Function unknow	95.18
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.14
COG5167	776	VID27 Protein involved in vacuole import and degra	95.07
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.85
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.73
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.65
COG5167	776	VID27 Protein involved in vacuole import and degra	94.63
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.39
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.38
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.34
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.26
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.23
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.97
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.75
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	93.66
COG4590	733	ABC-type uncharacterized transport system, permeas	93.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.43
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.32
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.14
KOG2247	615	consensus WD40 repeat-containing protein [General	92.85
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.64
PHA02790	480	Kelch-like protein; Provisional	92.51
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.41
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.38
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.37
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.06
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.99
PLN02153	341	epithiospecifier protein	91.96
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.93
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.8
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.72
COG5276	370	Uncharacterized conserved protein [Function unknow	91.6
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.14
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.06
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.71
PLN02153	341	epithiospecifier protein	90.65
PLN02193	470	nitrile-specifier protein	90.28
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.25
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	90.25
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	90.06
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.54
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.38
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.96
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.94
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.86
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.86
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.85
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.42
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.23
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.16
PLN02193	470	nitrile-specifier protein	87.69
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	87.6
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.54
PF04931	784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	87.49
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	87.18
KOG2377	657	consensus Uncharacterized conserved protein [Funct	86.81
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	86.12
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	85.69
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	85.47
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.38
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.34
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.13
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	85.07
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.47
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.2
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.17
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.09
KOG3616	1636	consensus Selective LIM binding factor [Transcript	83.18
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	82.85
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	82.56
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	82.16
KOG2727	1244	consensus Rab3 GTPase-activating protein, non-cata	82.15
COG4880	603	Secreted protein containing C-terminal beta-propel	81.94
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	81.62
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	80.15

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.7e-83  Score=580.48  Aligned_cols=458  Identities=44%  Similarity=0.781  Sum_probs=390.7

Q ss_pred             CcceeeeccCCCCCcCCcccCCCCHHHHHHHHhccccccccccCCCCCchhhhhhhhhhhccchhHHHHHHHhhcCCCcc
Q 010748            1 MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQSDDASQAVAVANALGKTSK   80 (502)
Q Consensus         1 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (502)
                      ||||++|||||+||++|+|++| +++|++|||.      +++ +..+ +++.+   .+.++      +++.+++..+..-
T Consensus         3 ~Vsa~swvprG~ake~Pdk~~l-~~~e~~rii~------~e~-~~~~-~ee~~---~e~~~------~~~~a~~~~~~~l   64 (463)
T KOG0270|consen    3 MVSALSWVPRGVAKEFPDKIEL-DDEELKRIIQ------LEG-AIAD-DEESE---SESDD------AEESAEEQGKGML   64 (463)
T ss_pred             eeeeeeeeeccchhhCCccccC-CHHHHHHHhh------hcc-cccc-ccccc---cccch------hhhhhhhhccccc
Confidence            8999999999999999999999 9999999875      111 2122 11110   00000      1111122222211


Q ss_pred             CCCCCCCCCCccccccccCCCCCCCCCc-ccccccCcccceeccCCCCCCcccCCCC-CCccccccccccCCCceEEEEE
Q 010748           81 SKNSGTKFDDITDGLKELDMDHYDDEDD-GVEIFGKGLGDLYYASNQMDPYLKDKDD-EDSEDLEDMTINPNDAVIVCAR  158 (502)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~d~e~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~  158 (502)
                      +...+.+.+..+..|+||+|++||+|.+ .+.+|.++.++.+|.+++.|||++++++ +++++...+.+.|++++|+||.
T Consensus        65 ~~~~d~d~~~~~~~l~e~d~d~ydee~~g~~~~f~s~~g~~~y~sne~DPYvt~~d~e~deee~de~~V~psDnlIl~ar  144 (463)
T KOG0270|consen   65 DSSGDVDDDLKEYELKEYDMDEYDEEADGEIELFSSLLGIAVYPSNEKDPYVTIPDDEDDEEEKDEEQVKPSDNLILCAR  144 (463)
T ss_pred             ccccccCccchhhhhhhhccccchhcccccccccccccCceeccCCCCCCccccCCcccchhhcccceeccCCcEEEEee
Confidence            1111234444556899999999999975 4889999999999999999999999765 4556689999999999999999


Q ss_pred             ecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceec
Q 010748          159 NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL  238 (502)
Q Consensus       159 ~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l  238 (502)
                      .++++++|+||+|+....   ++|+||+.++++||+|++|+++.......|||+|+|++++.|.|||++..+.+.|..+|
T Consensus       145 ~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L  221 (463)
T KOG0270|consen  145 NEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTL  221 (463)
T ss_pred             ccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceee
Confidence            999999999999999887   99999999999999999999995544556999999999999999999999999999999


Q ss_pred             CCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEc
Q 010748          239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN  318 (502)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~  318 (502)
                      |.....+++      +..+......+|+++|.+|+|+...+++|||||.|.+|++||+.++++..++..|..+|+++.|+
T Consensus       222 Gs~~sk~~~------k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh  295 (463)
T KOG0270|consen  222 GSKASKKKK------KKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWH  295 (463)
T ss_pred             chhhhhhhh------hhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEec
Confidence            965543222      22224445568999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce
Q 010748          319 HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF  398 (502)
Q Consensus       319 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  398 (502)
                      |..+.+|++|+.|++|.+.|+|........|...+.|..++|+|+..+.|++++.||+|+.+|+|+.        .++++
T Consensus       296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vw  367 (463)
T KOG0270|consen  296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVW  367 (463)
T ss_pred             CCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCcee
Confidence            9999999999999999999999888888899999999999999999999999999999999999998        68999


Q ss_pred             EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      ++.+|..+|+++++++..+++|+|++.|+.|++|++....+..+.......+...|+++.|+-.++||.||..+.++|||
T Consensus       368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd  447 (463)
T KOG0270|consen  368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD  447 (463)
T ss_pred             EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEee
Confidence            99999999999999999999999999999999999988877677777766778899999999999999999999999999


Q ss_pred             CCCCccccccccCCC
Q 010748          479 TLSDAGISNRFSKYS  493 (502)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (502)
                      +.+...+++.|+.+.
T Consensus       448 ~~~~~~V~kaF~~~~  462 (463)
T KOG0270|consen  448 IFTNSPVRKAFGSRL  462 (463)
T ss_pred             cccChhHHHhhcccc
Confidence            999999999998764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-46  Score=335.62  Aligned_cols=301  Identities=26%  Similarity=0.379  Sum_probs=262.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|.+.|.+++|+|++..||+|+.+.   ++++|..++... ......|..-     .+|++|       +|||+.||+|
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~---TvR~WD~~TeTp-~~t~KgH~~W-----Vlcvaw-------sPDgk~iASG  175 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDT---TVRLWDLDTETP-LFTCKGHKNW-----VLCVAW-------SPDGKKIASG  175 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCc---eEEeeccCCCCc-ceeecCCccE-----EEEEEE-------CCCcchhhcc
Confidence            57999999999999999999999775   778888887764 1122234333     379999       8999999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC----CcEEEEEecCCcE
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF----RNILASASADKQV  291 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~sgs~dg~v  291 (502)
                      +.+|+|++||..++.+..                          ..+.+|+..|++|+|.|-+    ..+||++|.||+|
T Consensus       176 ~~dg~I~lwdpktg~~~g--------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v  229 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQQIG--------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV  229 (480)
T ss_pred             ccCCeEEEecCCCCCccc--------------------------ccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence            999999999987654432                          3566999999999998742    3489999999999


Q ss_pred             EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeC----------
Q 010748          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD----------  361 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~----------  361 (502)
                      +|||+..++++..+.+|+.+|+|++|--+|  ++++|+.|++|++|+...+.....+.+|...|+.++.+          
T Consensus       230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  230 RIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             EEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence            999999999999999999999999998776  99999999999999999988888888999999988876          


Q ss_pred             -CCCC------------------------CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          362 -PHAE------------------------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       362 -~~~~------------------------~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                       |.+.                        ..+++|+.|.++.+|+....        .+++..+.+|..-|+.+.|+|++
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--------kkpi~rmtgHq~lVn~V~fSPd~  379 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--------KKPITRMTGHQALVNHVSFSPDG  379 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--------ccchhhhhchhhheeeEEECCCc
Confidence             2222                        25999999999999998776        47889999999999999999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          417 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                       +++|+++.|+.|++|+.++++  .+.++.+|.++|+.++|+.|.+ ||++|+.|.+++||++++.+....+.+|.
T Consensus       380 -r~IASaSFDkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~  451 (480)
T KOG0271|consen  380 -RYIASASFDKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHA  451 (480)
T ss_pred             -cEEEEeecccceeeeeCCCcc--hhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCC
Confidence             999999999999999999998  6888999999999999999999 79999999999999999998887776654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.5e-43  Score=318.11  Aligned_cols=286  Identities=20%  Similarity=0.297  Sum_probs=252.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      ..+..|..+.|+++++.||+|+.+|   .++||..... .....++.|...+     .++.|.+..     ++..||+|+
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG---~~kvW~~~~~-~~~~~l~gH~~~v-----~~~~fhP~~-----~~~~lat~s  238 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSG---LVKVWSVPQC-NLLQTLRGHTSRV-----GAAVFHPVD-----SDLNLATAS  238 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCC---ceeEeecCCc-ceeEEEeccccce-----eeEEEccCC-----Cccceeeec
Confidence            3457899999999999999999998   5688877655 2233555665444     577774220     377899999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .||++++|+++..                           .+...+.+|...|..++|+|+ +.+|+|+|.|.+-++||+
T Consensus       239 ~Dgtvklw~~~~e---------------------------~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~  290 (459)
T KOG0272|consen  239 ADGTVKLWKLSQE---------------------------TPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDL  290 (459)
T ss_pred             cCCceeeeccCCC---------------------------cchhhhhcchhhheeeeecCC-Cceeeecccccchhhccc
Confidence            9999999999853                           233356689999999999999 569999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      .++..+....+|+..|.+++|+|+| .+++||+.|..-+|||+|+++++..+.+|..+|.+|.|+|+| +.+++|+.|++
T Consensus       291 ~tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt  368 (459)
T KOG0272|consen  291 ETKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNT  368 (459)
T ss_pred             ccchhhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCc
Confidence            9999988889999999999999999 999999999999999999999999899999999999999976 58999999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      ++|||+|..         ..+..+.+|..-|+.+.|+|..+.+|+|++.|++++||...+.+  ++.++.+|.+.|.++.
T Consensus       369 ~kVWDLR~r---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLaGHe~kV~s~D  437 (459)
T KOG0272|consen  369 CKVWDLRMR---------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLAGHEGKVISLD  437 (459)
T ss_pred             EEEeeeccc---------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhcCCccceEEEE
Confidence            999999986         67999999999999999999766999999999999999999888  7889999999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEE
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .+|++.+ ++|++.|.++++|.
T Consensus       438 is~d~~~-i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  438 ISPDSQA-IATSSFDRTIKLWR  458 (459)
T ss_pred             eccCCce-EEEeccCceeeecc
Confidence            9999995 99999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-41  Score=304.33  Aligned_cols=290  Identities=23%  Similarity=0.334  Sum_probs=249.4

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|||..||+|+.++   .+.+|.-..+......|..|...+     .+++|-+...  .|..++||++
T Consensus       154 KgH~~WVlcvawsPDgk~iASG~~dg---~I~lwdpktg~~~g~~l~gH~K~I-----t~Lawep~hl--~p~~r~las~  223 (480)
T KOG0271|consen  154 KGHKNWVLCVAWSPDGKKIASGSKDG---SIRLWDPKTGQQIGRALRGHKKWI-----TALAWEPLHL--VPPCRRLASS  223 (480)
T ss_pred             cCCccEEEEEEECCCcchhhccccCC---eEEEecCCCCCcccccccCcccce-----eEEeeccccc--CCCccceecc
Confidence            57999999999999999999999998   344444434443333455555444     6899976644  5778899999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.||.|+|||+..+                           .....+.+|+.+|+|+.|-.+  .+|++||.|++|++|+
T Consensus       224 skDg~vrIWd~~~~---------------------------~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~  274 (480)
T KOG0271|consen  224 SKDGSVRIWDTKLG---------------------------TCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWR  274 (480)
T ss_pred             cCCCCEEEEEccCc---------------------------eEEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEE
Confidence            99999999999753                           344466799999999999765  4999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEc-----------CCC------------------------CcEEEEEeCCCcEEEEecC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWN-----------HHS------------------------PQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~-----------~~~------------------------~~~l~s~s~dg~i~iwd~~  340 (502)
                      ...|++.+.+++|...|+.|+.+           |.+                        +..|++|+.|.++.+|+..
T Consensus       275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~  354 (480)
T KOG0271|consen  275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF  354 (480)
T ss_pred             ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence            99999999999999999999887           222                        2359999999999999976


Q ss_pred             CCC-CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          341 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       341 ~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      ..+ ++....+|..-|+.+.|+|++. ++++++-|..|++|+.+++         +.+.++.+|-.+|..++|+.+. ++
T Consensus       355 ~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsaDs-RL  423 (480)
T KOG0271|consen  355 KSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSADS-RL  423 (480)
T ss_pred             ccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEeccCc-cE
Confidence            554 5566778999999999999875 8999999999999999998         8899999999999999999997 99


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      |++|+.|.++++|++++.+  +...+.+|...|+++.|+|||. .+++|+.|..+++|.
T Consensus       424 lVS~SkDsTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  424 LVSGSKDSTLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEcCCCceEEEEEeeeee--ecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence            9999999999999999987  6788999999999999999999 699999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.7e-40  Score=285.95  Aligned_cols=292  Identities=19%  Similarity=0.325  Sum_probs=246.8

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++.|+++.+.|++++.++     ++.+|+.-..          ....++|+...|+. ..+|+|.|+++|.|
T Consensus        52 kGH~~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~Tt----------nK~haipl~s~WVM-tCA~sPSg~~VAcG  115 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTT----------NKVHAIPLPSSWVM-TCAYSPSGNFVACG  115 (343)
T ss_pred             cccccceeeeEecCCcCeEEeeccCC-----eEEEEEcccc----------cceeEEecCceeEE-EEEECCCCCeEEec
Confidence            35889999999999999999999998     5555553332          11234456667753 35669999999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|....||++.+.+.-                     ........+.+|++-+.|+.|.++  ..|+++|.|.++.+||
T Consensus       116 GLdN~Csiy~ls~~d~~---------------------g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWD  172 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAE---------------------GNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWD  172 (343)
T ss_pred             CcCceeEEEeccccccc---------------------ccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEE
Confidence            99999999999753211                     112334457799999999999987  3788999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      +++++.+..|.+|.+.|.+|.++|..++.|++|+.|+..++||+|.+...+.+.+|.+.|++|+|.|+|. -|++|++|+
T Consensus       173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~  251 (343)
T KOG0286|consen  173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDA  251 (343)
T ss_pred             cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCc
Confidence            9999999999999999999999995559999999999999999999999998999999999999999876 799999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      +.++||+|....       ..++.-..-..+|++++||..| ++|++|..|.++.+||.-.++  .+..+.+|.+.|.|+
T Consensus       252 tcRlyDlRaD~~-------~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  252 TCRLYDLRADQE-------LAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCL  321 (343)
T ss_pred             eeEEEeecCCcE-------EeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc--eEEEeeccCCeeEEE
Confidence            999999998731       2233333445789999999998 999999999999999998877  566778999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEE
Q 010748          456 AFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       456 ~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      ..+|||. .|++|+.|..++||.
T Consensus       322 ~~s~DG~-av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  322 GVSPDGM-AVATGSWDSTLRIWA  343 (343)
T ss_pred             EECCCCc-EEEecchhHheeecC
Confidence            9999998 699999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-41  Score=308.17  Aligned_cols=248  Identities=23%  Similarity=0.320  Sum_probs=231.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s  284 (502)
                      +.+++.||||+.+|.++||+.....                           ....+.+|+..|.++.|+|. ...-|||
T Consensus       184 S~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~~~v~~~~fhP~~~~~~lat  236 (459)
T KOG0272|consen  184 SRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHTSRVGAAVFHPVDSDLNLAT  236 (459)
T ss_pred             ecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccccceeeEEEccCCCccceee
Confidence            7899999999999999999987542                           23356799999999999998 4668999


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  364 (502)
                      |+.||+|++|++.+..++..+.+|...|..++|+|+| ++|+|+++|.+-++||++++.......+|...|.+++|+|+|
T Consensus       237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             eccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence            9999999999999999999999999999999999999 999999999999999999999888889999999999999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . ++++|+.|..-++||+|++         .++..+.+|..+|.+|+|+|+| ..|||||.|++++|||++..+  .+++
T Consensus       316 S-L~~tGGlD~~~RvWDlRtg---------r~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~--~ly~  382 (459)
T KOG0272|consen  316 S-LAATGGLDSLGRVWDLRTG---------RCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS--ELYT  382 (459)
T ss_pred             c-eeeccCccchhheeecccC---------cEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc--ccee
Confidence            7 8999999999999999998         8899999999999999999998 999999999999999999887  5889


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      +.+|..-|+.+.|+|...+.|+|++.|++++||...+..+++.+.+|..+
T Consensus       383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k  432 (459)
T KOG0272|consen  383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK  432 (459)
T ss_pred             cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc
Confidence            99999999999999966567999999999999999999999999888654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.7e-39  Score=289.69  Aligned_cols=284  Identities=21%  Similarity=0.396  Sum_probs=242.3

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d  218 (502)
                      .-.|..+.|.|+|+.|++|+..|++   .+|.-..-. .+ .+..-|+.++    .++.|       +++|.++++|..+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEF---tLWNg~~fn-FE-tilQaHDs~V----r~m~w-------s~~g~wmiSgD~g  159 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEF---TLWNGTSFN-FE-TILQAHDSPV----RTMKW-------SHNGTWMISGDKG  159 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccE---EEecCceee-HH-HHhhhhcccc----eeEEE-------ccCCCEEEEcCCC
Confidence            4578999999999999999999854   455331110 01 2223444443    68888       7899999999999


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~  298 (502)
                      |.|++|+.+-.                           ..+.....|..+|++++|+|+ ...+++||.||+|+|||...
T Consensus       160 G~iKyWqpnmn---------------------------nVk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  160 GMIKYWQPNMN---------------------------NVKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             ceEEecccchh---------------------------hhHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccC
Confidence            99999998621                           111222346699999999998 56999999999999999999


Q ss_pred             CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~  378 (502)
                      .+.-..+.+|.-.|.|+.|||.. .++++|+.|..|++||.+++.++..+..|...|..+.|+|++ ++|++++.|..++
T Consensus       212 ~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~k  289 (464)
T KOG0284|consen  212 PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCK  289 (464)
T ss_pred             CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEE
Confidence            99888999999999999999998 899999999999999999999999899999999999999987 6999999999999


Q ss_pred             EEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748          379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +||+|+.         +-++.+.+|...|+++.|+|-.+.+|.+|+.||.|..|.+....+. ...-.+|.+.|++++|+
T Consensus       290 v~DiR~m---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-~~i~~AHd~~iwsl~~h  359 (464)
T KOG0284|consen  290 VFDIRTM---------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-GEIPPAHDGEIWSLAYH  359 (464)
T ss_pred             EEehhHh---------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc-cCCCcccccceeeeecc
Confidence            9999976         7789999999999999999998899999999999999999865543 33446799999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEEC
Q 010748          459 EDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       459 pd~~~ll~sg~~dg~i~vwd~  479 (502)
                      |-|. +|++|+.|.++++|.-
T Consensus       360 PlGh-il~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  360 PLGH-ILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccce-eEeecCCCcceeeecc
Confidence            9997 8999999999999975

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.6e-37  Score=283.27  Aligned_cols=298  Identities=23%  Similarity=0.406  Sum_probs=254.4

Q ss_pred             CccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCCC--CCCe------eeeeccccCCCcceeeeecCCCCCCCC
Q 010748          138 DSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGG--DPNL------YVHHHIIIPAFPLCMAWLDCPLKDREK  208 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~--~~~l------~~~~~~~~~~~~~~~~~~~~~~~~s~~  208 (502)
                      |+.+|.+.+|+|-.. +|++|+.+-   ..++|.+......  .+..      +..+..+...-.+|++|       +.+
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s---~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W-------n~~  246 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDS---TARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW-------NND  246 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCcc---ceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe-------cCC
Confidence            888999999999988 777776553   5678877652211  1111      12233333444688999       688


Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      |++||+|+.+|.++||+.+                            ......+..|+++|.+|.|+.. +++|++++.|
T Consensus       247 G~~LatG~~~G~~riw~~~----------------------------G~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD  297 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNKD----------------------------GNLISTLGQHKGPIFSLKWNKK-GTYILSGGVD  297 (524)
T ss_pred             CCeEEEeecCcEEEEEecC----------------------------chhhhhhhccCCceEEEEEcCC-CCEEEeccCC
Confidence            9999999999999999987                            3344456689999999999999 6799999999


Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~  368 (502)
                      +++.+||..++.+...+..|+.+-..+.|-.+.  -|++++.|+.|+++.+....+...+.+|.++|.++.|+|.+. +|
T Consensus       298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LL  374 (524)
T KOG0273|consen  298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LL  374 (524)
T ss_pred             ccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eE
Confidence            999999999999999999999987889997764  799999999999999999888888889999999999999876 89


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC--------CEEEEEeCCCcEEEEECCCCCee
Q 010748          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP--------NLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--------~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      ++++.|++++||.....         .....+.+|...|..+.|+|.++        ..+++++.|++|++||+..+.  
T Consensus       375 aS~SdD~TlkiWs~~~~---------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv--  443 (524)
T KOG0273|consen  375 ASCSDDGTLKIWSMGQS---------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV--  443 (524)
T ss_pred             EEecCCCeeEeeecCCC---------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc--
Confidence            99999999999998876         77888999999999999999763        579999999999999999988  


Q ss_pred             EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ++..+..|..+|.+++|+|+|+| +|+|+.||.|.+|++.+++.++..-
T Consensus       444 ~i~~f~kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  444 PIHTLMKHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             eeEeeccCCCceEEEEecCCCcE-EEecCCCCeeEeccccchheeEeec
Confidence            67888899999999999999996 9999999999999999998876654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-37  Score=303.33  Aligned_cols=264  Identities=22%  Similarity=0.423  Sum_probs=223.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCC--CcCcceecCCcchh--hhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVID--EVQPHVILGGIDEE--KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~--~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      ++++.+||.|..|..|++|.+....  .+....-+......  .................+.||.++|..++|+|+ +++
T Consensus       387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd-~rf  465 (707)
T KOG0263|consen  387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD-RRF  465 (707)
T ss_pred             cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc-ccc
Confidence            8999999999999999999997421  11110000000000  000001111223334457899999999999999 779


Q ss_pred             EEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeC
Q 010748          282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       282 l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      |++||.|++|++|.+.+..++..+++|..+|+.+.|+|.| .+|+|++.|++.++|......+.....+|-+.|.|+.|+
T Consensus       466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FH  544 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH  544 (707)
T ss_pred             eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEEEC
Confidence            9999999999999999999999999999999999999999 999999999999999999888888888999999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      |+. +++++|+.|.+|++||+.++         ..++.+.+|.++|++++|+|+| .+|++|+.||.|++||+.++.  .
T Consensus       545 PNs-~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~--~  611 (707)
T KOG0263|consen  545 PNS-NYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS--L  611 (707)
T ss_pred             Ccc-cccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc--c
Confidence            975 58999999999999999998         7789999999999999999998 999999999999999999988  6


Q ss_pred             EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      +..+.+|.+.|.++.|+.+|. +||+||.|.+|++||+..-...
T Consensus       612 v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  612 VKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             hhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccc
Confidence            778889999999999999999 7999999999999999764443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=258.28  Aligned_cols=290  Identities=17%  Similarity=0.244  Sum_probs=236.0

Q ss_pred             eEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCc
Q 010748          153 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEV  232 (502)
Q Consensus       153 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~  232 (502)
                      +|++++.+.   ++++|....+..  ..-..|.+..+    ..++-       .|++++||+++. ..||+||+++... 
T Consensus        12 iLvsA~YDh---TIRfWqa~tG~C--~rTiqh~dsqV----NrLei-------Tpdk~~LAaa~~-qhvRlyD~~S~np-   73 (311)
T KOG0315|consen   12 ILVSAGYDH---TIRFWQALTGIC--SRTIQHPDSQV----NRLEI-------TPDKKDLAAAGN-QHVRLYDLNSNNP-   73 (311)
T ss_pred             EEEeccCcc---eeeeeehhcCeE--EEEEecCccce----eeEEE-------cCCcchhhhccC-CeeEEEEccCCCC-
Confidence            567777665   556655554432  12223444333    22222       789999999975 7999999986443 


Q ss_pred             CcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCe
Q 010748          233 QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKV  312 (502)
Q Consensus       233 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v  312 (502)
                                              .+...+.+|+..|+++.|..+ +..+++||.||+++|||++...+.+.++ |.++|
T Consensus        74 ------------------------~Pv~t~e~h~kNVtaVgF~~d-grWMyTgseDgt~kIWdlR~~~~qR~~~-~~spV  127 (311)
T KOG0315|consen   74 ------------------------NPVATFEGHTKNVTAVGFQCD-GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPV  127 (311)
T ss_pred             ------------------------CceeEEeccCCceEEEEEeec-CeEEEecCCCceEEEEeccCcccchhcc-CCCCc
Confidence                                    244566789999999999999 5699999999999999999988877776 77999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 010748          313 QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS  391 (502)
Q Consensus       313 ~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~  391 (502)
                      +++..+|.. .-|++|..+|.|++||++...+..... .....|.++...|+|. .++++...|..++|++-+.....  
T Consensus       128 n~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s--  203 (311)
T KOG0315|consen  128 NTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTAS--  203 (311)
T ss_pred             ceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccc--
Confidence            999999998 789999999999999999876655433 2346799999999887 78889999999999998743211  


Q ss_pred             CCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748          392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       392 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d  471 (502)
                       ...++..+++|.+.+..+.+||++ ++||++|.|.+++||+..+. ......+.+|...++.++||.++.| |++|+.|
T Consensus       204 -~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~Y-lvTassd  279 (311)
T KOG0315|consen  204 -ELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEY-LVTASSD  279 (311)
T ss_pred             -cceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccE-EEecCCC
Confidence             247788899999999999999998 99999999999999999988 4567788899999999999999997 8999999


Q ss_pred             CcEEEEECCCCccccccccCCCC
Q 010748          472 GKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       472 g~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      +.+++|++..++.++..-+|+..
T Consensus       280 ~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  280 HTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             CceeecccccCceeeecCCcccc
Confidence            99999999999999888777654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3e-35  Score=255.51  Aligned_cols=253  Identities=22%  Similarity=0.343  Sum_probs=228.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      +|+.|       ++++++|++++.||.+.|||.-+.+.+..+                           .--...|+.++
T Consensus        59 ~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~hai---------------------------pl~s~WVMtCA  104 (343)
T KOG0286|consen   59 YAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAI---------------------------PLPSSWVMTCA  104 (343)
T ss_pred             eeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEE---------------------------ecCceeEEEEE
Confidence            68888       799999999999999999998764433322                           23457899999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCC------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      |+|. ++++|+|+.|+...||++.+.      +..+.+.+|++.+.|+.|-+++  .|+|++.|.++.+||+.+++....
T Consensus       105 ~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~  181 (343)
T KOG0286|consen  105 YSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQV  181 (343)
T ss_pred             ECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEE
Confidence            9999 679999999999999999865      4567789999999999999865  799999999999999999999888


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      +.+|.+.|.++.+.|...+.|++|+-|+..++||+|.+         .+++++.+|...|++++|.|+| .-++||+.|+
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP~G-~afatGSDD~  251 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFPSG-DAFATGSDDA  251 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEccCC-CeeeecCCCc
Confidence            88999999999999976779999999999999999997         8899999999999999999998 9999999999


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      +.++||++..+...++.......+|++++||..|+ +|.+|..|.++.|||...++.+..+.+|...
T Consensus       252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNR  317 (343)
T KOG0286|consen  252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENR  317 (343)
T ss_pred             eeEEEeecCCcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCe
Confidence            99999999998778888777788999999999999 5777899999999999999999888888664

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-34  Score=250.28  Aligned_cols=288  Identities=19%  Similarity=0.333  Sum_probs=221.9

Q ss_pred             CCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCC---CC-CeeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010748          136 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGG---DP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~---~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  210 (502)
                      +.|.+.|..+++.+.+ ..|+.++.+.   .+-+|.+......   .. .+..|. ..+.    .+.       .+++|+
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk---~ii~W~L~~dd~~~G~~~r~~~GHs-H~v~----dv~-------~s~dg~   76 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDK---TIIVWKLTSDDIKYGVPVRRLTGHS-HFVS----DVV-------LSSDGN   76 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccce---EEEEEEeccCccccCceeeeeeccc-eEec----ceE-------EccCCc
Confidence            4588999999999985 4666676665   5666766654321   11 223332 2221    111       178999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~  290 (502)
                      +.++++.|+++++||+.++.                           ....|.+|+..|++++|+++ ...++|||.|.+
T Consensus        77 ~alS~swD~~lrlWDl~~g~---------------------------~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkT  128 (315)
T KOG0279|consen   77 FALSASWDGTLRLWDLATGE---------------------------STRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKT  128 (315)
T ss_pred             eEEeccccceEEEEEecCCc---------------------------EEEEEEecCCceEEEEecCC-CceeecCCCcce
Confidence            99999999999999998642                           33356699999999999999 458999999999


Q ss_pred             EEEEeCCCCeeeEeeccC--CCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748          291 VKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  367 (502)
                      |++|++.. .|..++..+  .+.|+|++|+|.. ..+|++++.|++|++||+++.+......+|.+.++.+.++|+|. +
T Consensus       129 iklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-l  206 (315)
T KOG0279|consen  129 IKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-L  206 (315)
T ss_pred             eeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-E
Confidence            99999764 455555433  7899999999984 47999999999999999999998888889999999999999987 8


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-
Q 010748          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-  446 (502)
Q Consensus       368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-  446 (502)
                      .++|+.||.+.+||++..         +.++.+ .|...|.+++|+|+.  +.+++..+..|+|||+.++....-.... 
T Consensus       207 casGgkdg~~~LwdL~~~---------k~lysl-~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~  274 (315)
T KOG0279|consen  207 CASGGKDGEAMLWDLNEG---------KNLYSL-EAFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELKLDG  274 (315)
T ss_pred             EecCCCCceEEEEEccCC---------ceeEec-cCCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhccccc
Confidence            999999999999999987         555554 478899999999964  4444555666999999987632211111 


Q ss_pred             -C-----CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          447 -P-----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       447 -~-----~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                       +     ..-...+++|+++|.. |.+|-.|+.|++|.+..
T Consensus       275 ~g~s~~~~~~~clslaws~dG~t-Lf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  275 IGPSSKAGDPICLSLAWSADGQT-LFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cccccccCCcEEEEEEEcCCCcE-EEeeecCCcEEEEEeec
Confidence             1     1223578899999994 88899999999998753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-35  Score=262.82  Aligned_cols=287  Identities=22%  Similarity=0.393  Sum_probs=252.8

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|..+.|+|+-.++++++.+.   ++++|.+.+++. ...|..|.+..     ..+.       |+..|++||++
T Consensus       105 ~g~r~~vt~v~~hp~~~~v~~as~d~---tikv~D~~tg~~-e~~LrGHt~sv-----~di~-------~~a~Gk~l~tc  168 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEALVVSASEDA---TIKVFDTETGEL-ERSLRGHTDSV-----FDIS-------FDASGKYLATC  168 (406)
T ss_pred             hccccceeeeeeccCceEEEEecCCc---eEEEEEccchhh-hhhhhccccce-----eEEE-------EecCccEEEec
Confidence            45888999999999999999998665   678887777664 44566666542     2333       36779999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|-.+.+||++..                          ......+.+|...|.++.|-|. +.+++|++.|.+|+.|+
T Consensus       169 SsDl~~~LWd~~~~--------------------------~~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We  221 (406)
T KOG0295|consen  169 SSDLSAKLWDFDTF--------------------------FRCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWE  221 (406)
T ss_pred             CCccchhheeHHHH--------------------------HHHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEe
Confidence            99999999999741                          2233345689999999999999 57999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC-----------
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-----------  364 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-----------  364 (502)
                      +.++-++.+|.+|+..|..++.+.+| .++++++.|.+|++|-+.+.++......|..+|.|++|.|..           
T Consensus       222 ~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~  300 (406)
T KOG0295|consen  222 CDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS  300 (406)
T ss_pred             cccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence            99999999999999999999999999 999999999999999999998888888999999999998732           


Q ss_pred             ---CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748          365 ---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       365 ---~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                         ..++++++.|++|++||+.++         .+++++.+|...|..++|+|.| ++|+++..|+++++||+++.+  |
T Consensus       301 ~~~~~~l~s~SrDktIk~wdv~tg---------~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~--c  368 (406)
T KOG0295|consen  301 TNGGQVLGSGSRDKTIKIWDVSTG---------MCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQ--C  368 (406)
T ss_pred             CCCccEEEeecccceEEEEeccCC---------eEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccce--e
Confidence               248899999999999999997         8999999999999999999988 999999999999999999988  8


Q ss_pred             EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      ......|...|+++.|+.+.+| +++|+-|..+++|..
T Consensus       369 mk~~~ah~hfvt~lDfh~~~p~-VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  369 MKTLEAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeccCCCcceeEEEecCCCCce-EEeccccceeeeeec
Confidence            8889999999999999999996 999999999999964

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-35  Score=252.93  Aligned_cols=293  Identities=23%  Similarity=0.331  Sum_probs=239.3

Q ss_pred             ccccccCC-CceEEEE--EecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCC-CCEEEEecCC
Q 010748          143 EDMTINPN-DAVIVCA--RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSME  218 (502)
Q Consensus       143 ~~~~~~p~-~~~l~~~--~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~la~g~~d  218 (502)
                      .+++|||- .+.||+|  ..-|-.+.-++++.+.....  .+..........--+.++|       +++ .+.+++++.|
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~--gi~e~~s~d~~D~LfdV~W-------se~~e~~~~~a~GD   82 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK--GIQECQSYDTEDGLFDVAW-------SENHENQVIAASGD   82 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCC--CeEEEEeeecccceeEeee-------cCCCcceEEEEecC
Confidence            56788875 3344333  33333334477777664221  2222111112222245566       554 7889999999


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~  298 (502)
                      |+++|||+..                          +..+...++.|...|.++.|++..+..++++|.|++|++|+...
T Consensus        83 GSLrl~d~~~--------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   83 GSLRLFDLTM--------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             ceEEEeccCC--------------------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            9999999641                          13355677789999999999998888899999999999999999


Q ss_pred             CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~  378 (502)
                      ++.+.++.+|...|....|+|..+++++++|.|+++++||+|.+........|...+.|+.|+....+++++|+.|+.|+
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr  216 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR  216 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence            99999999999999999999999999999999999999999998776667788889999999999999999999999999


Q ss_pred             EEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748          379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +||+|+.        ..++..+.+|.-.|..+.|||....+|++++.|=+++|||...+. .++.+...|...+..+.|+
T Consensus       217 ~wDir~~--------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~HtEFv~g~Dws  287 (311)
T KOG0277|consen  217 GWDIRNL--------RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-SAIETVDHHTEFVCGLDWS  287 (311)
T ss_pred             EEehhhc--------cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-hhhhhhhccceEEeccccc
Confidence            9999998        588999999999999999999988999999999999999998654 3566777899999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEEC
Q 010748          459 EDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       459 pd~~~ll~sg~~dg~i~vwd~  479 (502)
                      +-.+..+|+.+.|+.++||+.
T Consensus       288 ~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  288 LFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccCceeeecccccceeeecc
Confidence            977778999999999999984

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=258.87  Aligned_cols=283  Identities=16%  Similarity=0.278  Sum_probs=227.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC-CeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      .|..+|.++.++|+.+++++|+.++     .-++|+...+... .+..|.+.+     .|+.|       |.+|.|||||
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD-----~AflW~~~~ge~~~eltgHKDSV-----t~~~F-------shdgtlLATG  124 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDD-----LAFLWDISTGEFAGELTGHKDSV-----TCCSF-------SHDGTLLATG  124 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCc-----eEEEEEccCCcceeEecCCCCce-----EEEEE-------ccCceEEEec
Confidence            4889999999999999999999887     6667766655322 233555554     57766       7899999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      .++|.|+||...++....                           .+..-...|.-|.|+|. .++|+.|+.||.|.+|.
T Consensus       125 dmsG~v~v~~~stg~~~~---------------------------~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~  176 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGEQW---------------------------KLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQ  176 (399)
T ss_pred             CCCccEEEEEcccCceEE---------------------------EeecccCceEEEEeccc-ccEEEeecCCCcEEEEE
Confidence            999999999998643222                           22234567889999997 67999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE--------------------------
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------------------------  349 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------------------------  349 (502)
                      +.++...+.+.+|+.++++=.|.|+| ..++++..||+|++|++.++.+.....                          
T Consensus       177 ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~  255 (399)
T KOG0296|consen  177 IPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG  255 (399)
T ss_pred             CCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence            99988889999999999999999998 899999999999999998765432111                          


Q ss_pred             -------------------------eecCCeeEEEeCCCCC--CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec
Q 010748          350 -------------------------AVAADVESLAWDPHAE--HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       350 -------------------------~~~~~v~~v~~~~~~~--~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                                               .+...+.|+.+.|...  .++++|+-||+|.|||+...          .++..-.
T Consensus       256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------~~R~~c~  325 (399)
T KOG0296|consen  256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------TLRHICE  325 (399)
T ss_pred             cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------hhheecc
Confidence                                     0001122232222211  26888999999999999864          4555667


Q ss_pred             cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      |..+|+.+.|-+ . .+|++++.+|.|+.||.++++  +++.+.+|...|.+++++|+.+ +++|+|.|++.+||++.
T Consensus       326 he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~--l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  326 HEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQ--LKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CCCceEEEEEcC-c-chheeeccCceEEeeeccccc--eEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence            999999999998 3 789999999999999999999  7889999999999999999999 69999999999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-34  Score=278.28  Aligned_cols=291  Identities=23%  Similarity=0.390  Sum_probs=235.9

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCc-ceeeeecCCCCCCCCCCEEEEecCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP-LCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~la~g~~d  218 (502)
                      ..|.+..|||.-++||+|-..+     ..+.|+-.     .+..-|...+...+ ..+.|       +..|.+||.|+..
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG-----~f~LyelP-----~f~lih~LSis~~~I~t~~~-------N~tGDWiA~g~~k  328 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSG-----EFGLYELP-----DFNLIHSLSISDQKILTVSF-------NSTGDWIAFGCSK  328 (893)
T ss_pred             cceeeeeccCCceEEEEEecCC-----eeEEEecC-----CceEEEEeecccceeeEEEe-------cccCCEEEEcCCc
Confidence            5799999999999999999887     44444433     22333434444333 34444       5679999999876


Q ss_pred             -CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          219 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       219 -g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                       |.+-||+..+.                           ......++|...+++++++|+ +.++|+|+.||.|+|||..
T Consensus       329 lgQLlVweWqsE---------------------------sYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~  380 (893)
T KOG0291|consen  329 LGQLLVWEWQSE---------------------------SYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQ  380 (893)
T ss_pred             cceEEEEEeecc---------------------------ceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEecc
Confidence             89999999752                           233345689999999999999 5699999999999999999


Q ss_pred             CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCCCEEEEEeCCC-
Q 010748          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDG-  375 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~dg-  375 (502)
                      ++-|+.+|..|++.|+.++|+..+ +.+++++.||+|+.||+...+....+. ..+....|++..|.|. ++++|+.|. 
T Consensus       381 SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F  458 (893)
T KOG0291|consen  381 SGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF  458 (893)
T ss_pred             CceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence            999999999999999999999999 999999999999999998766544222 3345578899999776 677777666 


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|++|+++++         +.+-.+.+|.++|.+++|+|.+ ..|+++|.|.+||+||+-.... .+.++ .+...+..+
T Consensus       459 ~IfvWS~qTG---------qllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~-~vEtl-~i~sdvl~v  526 (893)
T KOG0291|consen  459 EIFVWSVQTG---------QLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG-TVETL-EIRSDVLAV  526 (893)
T ss_pred             EEEEEEeecC---------eeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc-eeeeE-eeccceeEE
Confidence            5999999998         7888999999999999999998 8999999999999999976531 12233 345679999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748          456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       456 ~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      +|+|+|.. ||++..||.|.+||+..+..+..+-+
T Consensus       527 sfrPdG~e-laVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  527 SFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             EEcCCCCe-EEEEEecceEEEEEhhhceeeccccc
Confidence            99999994 99999999999999988877754433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-35  Score=250.96  Aligned_cols=249  Identities=24%  Similarity=0.324  Sum_probs=212.5

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +...++++++|..|.+|++...+.                      +...+...+.||...|..+..+++ +++.+++|.
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~----------------------~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~sw   83 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDI----------------------KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASW   83 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCcc----------------------ccCceeeeeeccceEecceEEccC-CceEEeccc
Confidence            577899999999999999975322                      224556677899999999999999 679999999


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee-cCCeeEEEeCCCC-C
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHA-E  365 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~-~  365 (502)
                      |+++++||+.+++..+.|.+|...|.+++|++++ +.+++|+.|++|.+|++............ ...|.|++|+|.. .
T Consensus        84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN  162 (315)
T ss_pred             cceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence            9999999999999999999999999999999999 89999999999999999875543322222 6789999999984 4


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~  445 (502)
                      -++++++.|++|++||+++.         +....+.+|++.++.+.+||+| .++++|+.||.+.+||++.++  .++.+
T Consensus       163 p~Ivs~s~DktvKvWnl~~~---------~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k--~lysl  230 (315)
T KOG0279|consen  163 PIIVSASWDKTVKVWNLRNC---------QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK--NLYSL  230 (315)
T ss_pred             cEEEEccCCceEEEEccCCc---------chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc--eeEec
Confidence            48899999999999999986         7778889999999999999999 999999999999999999988  55555


Q ss_pred             cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748          446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                       .|...|.+++|+|+..+ |+.+ ....|+|||+.++..+..+-....++
T Consensus       231 -~a~~~v~sl~fspnryw-L~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~  277 (315)
T KOG0279|consen  231 -EAFDIVNSLCFSPNRYW-LCAA-TATSIKIWDLESKAVVEELKLDGIGP  277 (315)
T ss_pred             -cCCCeEeeEEecCCcee-Eeec-cCCceEEEeccchhhhhhcccccccc
Confidence             46789999999999864 6544 44569999999999987765554444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-33  Score=260.48  Aligned_cols=282  Identities=20%  Similarity=0.353  Sum_probs=240.6

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ....|+++.|+.+|.+||+|+.+|   .++||..+...-   ..+..|..++    +.+.|       +..|+||++|+.
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G---~~riw~~~G~l~---~tl~~HkgPI----~slKW-------nk~G~yilS~~v  296 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDG---EARIWNKDGNLI---STLGQHKGPI----FSLKW-------NKKGTYILSGGV  296 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCc---EEEEEecCchhh---hhhhccCCce----EEEEE-------cCCCCEEEeccC
Confidence            446899999999999999999998   345555443332   4445555554    78889       688999999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      |+++.+||..++...+                           .+.-|..+-..+.|-.+  ..+++++.|+.|+|+.+.
T Consensus       297 D~ttilwd~~~g~~~q---------------------------~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~  347 (524)
T KOG0273|consen  297 DGTTILWDAHTGTVKQ---------------------------QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVG  347 (524)
T ss_pred             CccEEEEeccCceEEE---------------------------eeeeccCCccceEEecC--ceEeecCCCceEEEEEec
Confidence            9999999987644333                           33357777788999876  379999999999999999


Q ss_pred             CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC--------CEEE
Q 010748          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE--------HSFV  369 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~--------~~~~  369 (502)
                      ...++.++.+|.++|.+|.|+|.+ .+|++++.|++++||.+........+..|...|..+.|+|.++        ..++
T Consensus       348 ~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~  426 (524)
T KOG0273|consen  348 EDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA  426 (524)
T ss_pred             CCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence            999999999999999999999999 9999999999999999998888877888999999999998653        3788


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  449 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~  449 (502)
                      +++.|++|++||+..+         .++..+..|+.+|.+++|+|++ .++|+|+.||.|.+|+.++++  .+....+ .
T Consensus       427 sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~--l~~s~~~-~  493 (524)
T KOG0273|consen  427 SASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK--LVKSYQG-T  493 (524)
T ss_pred             EeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh--eeEeecC-C
Confidence            9999999999999987         8899999999999999999998 999999999999999999998  4555544 4


Q ss_pred             CcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       450 ~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      +.|+.++|+.+|.+ |+.+-.||.+++-|++
T Consensus       494 ~~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  494 GGIFELCWNAAGDK-LGACASDGSVCVLDLR  523 (524)
T ss_pred             CeEEEEEEcCCCCE-EEEEecCCCceEEEec
Confidence            66999999999985 7777889999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.2e-34  Score=281.10  Aligned_cols=274  Identities=22%  Similarity=0.341  Sum_probs=227.0

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---------CC---------------------CCeeeeeccc
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---------GD---------------------PNLYVHHHII  188 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---------~~---------------------~~l~~~~~~~  188 (502)
                      ...+.|..|+++..+||+|..+-   .+++|.+.....         ..                     ..++.|.. +
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS---~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G-P  453 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDS---SVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG-P  453 (707)
T ss_pred             CCcceeEeecCCcchhhcccccc---EEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC-c
Confidence            45789999999999999998774   678887763210         00                     01222221 1


Q ss_pred             cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748          189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      +    +       ...|+|+.++|++++.|++||+|.+.+                           ......+.||..+
T Consensus       454 V----y-------g~sFsPd~rfLlScSED~svRLWsl~t---------------------------~s~~V~y~GH~~P  495 (707)
T KOG0263|consen  454 V----Y-------GCSFSPDRRFLLSCSEDSSVRLWSLDT---------------------------WSCLVIYKGHLAP  495 (707)
T ss_pred             e----e-------eeeecccccceeeccCCcceeeeeccc---------------------------ceeEEEecCCCcc
Confidence            1    2       234589999999999999999999986                           3344456699999


Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (502)
                      |+++.|+|. +.++||||.|++-++|.....++++.+.+|-+.|.|+.|||+. +++++||.|.+|++||+.++..+..+
T Consensus       496 VwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF  573 (707)
T KOG0263|consen  496 VWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF  573 (707)
T ss_pred             eeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe
Confidence            999999998 7899999999999999999999999999999999999999999 99999999999999999999999988


Q ss_pred             EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      .+|.++|++++|+|.|. ++++|+.+|.|.+||+.++         .++..+.+|++.|.++.|+.+| ..||+|+.|++
T Consensus       574 ~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~Dns  642 (707)
T KOG0263|consen  574 TGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANG---------SLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNS  642 (707)
T ss_pred             cCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCC---------cchhhhhcccCceeEEEEecCC-CEEEecCCCCe
Confidence            89999999999999765 8999999999999999987         7889999999999999999998 99999999999


Q ss_pred             EEEEECCCCCe----------------------eEEEEecCCCCcEEEEEEcCCCCcEEEEE
Q 010748          429 VKLWDLSNNQP----------------------SCIASRNPKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       429 i~vwd~~~~~~----------------------~~~~~~~~~~~~v~~~~~spd~~~ll~sg  468 (502)
                      |++||+.....                      .++..+.....+|.++.|....- +|++|
T Consensus       643 V~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl-~L~~g  703 (707)
T KOG0263|consen  643 VRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL-LLAVG  703 (707)
T ss_pred             EEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce-eEEec
Confidence            99999865321                      13444444556777777776552 44443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.5e-33  Score=244.49  Aligned_cols=249  Identities=21%  Similarity=0.345  Sum_probs=214.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+|.+||+|+.|..|.+|++....                          .-...+++|+++|+.+.|.++ ++.|+++
T Consensus        56 ~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------eN~~~lkgHsgAVM~l~~~~d-~s~i~S~  108 (338)
T KOG0265|consen   56 HPDGSCFASGGSDRAIVLWNVYGDC--------------------------ENFWVLKGHSGAVMELHGMRD-GSHILSC  108 (338)
T ss_pred             CCCCCeEeecCCcceEEEEeccccc--------------------------cceeeeccccceeEeeeeccC-CCEEEEe
Confidence            7999999999999999999975311                          111234489999999999999 6699999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      +.|.+|+.||+++|++++.+++|..-|.++.-+.-|..++.+++.||++++||+|+..... ......+++++.|...+.
T Consensus       109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-t~~~kyqltAv~f~d~s~  187 (338)
T KOG0265|consen  109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-TFENKYQLTAVGFKDTSD  187 (338)
T ss_pred             cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-ccccceeEEEEEeccccc
Confidence            9999999999999999999999999999999888888899999999999999999877665 455677899999998766


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEE
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIA  443 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~  443 (502)
                       .+.+|+-|+.|++||+|..         ..++.+.+|..+|+.+..+|.| .++.+-+.|.++++||++...+  .++.
T Consensus       188 -qv~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~  256 (338)
T KOG0265|consen  188 -QVISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVK  256 (338)
T ss_pred             -ceeeccccCceeeeccccC---------cceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEE
Confidence             6999999999999999987         7899999999999999999998 9999999999999999986433  2455


Q ss_pred             EecCCC----CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          444 SRNPKA----GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       444 ~~~~~~----~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      .+.+|.    -....++|+|++.+ +.+|+.|..+++||..+...+..+-+|.-.
T Consensus       257 if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r~~lyklpGh~gs  310 (338)
T KOG0265|consen  257 IFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSRRILYKLPGHYGS  310 (338)
T ss_pred             EeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccccEEEEcCCccee
Confidence            555442    23567899999996 888999999999999988888777776543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=262.20  Aligned_cols=244  Identities=20%  Similarity=0.360  Sum_probs=215.4

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ...+.|       .|+|+.|++|+..|.+.+|+..+                           ......++.|..+|+++
T Consensus        99 V~~v~W-------tPeGRRLltgs~SGEFtLWNg~~---------------------------fnFEtilQaHDs~Vr~m  144 (464)
T KOG0284|consen   99 VNVVRW-------TPEGRRLLTGSQSGEFTLWNGTS---------------------------FNFETILQAHDSPVRTM  144 (464)
T ss_pred             eeeEEE-------cCCCceeEeecccccEEEecCce---------------------------eeHHHHhhhhcccceeE
Confidence            345666       79999999999999999999843                           23344567899999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  351 (502)
                      .|+++ +.+++||+.+|.|++|+..-.. ++.++ +|...|++++|+|.. ..|++++.||+|+|||.+..+.-..+.+|
T Consensus       145 ~ws~~-g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GH  221 (464)
T KOG0284|consen  145 KWSHN-GTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGH  221 (464)
T ss_pred             EEccC-CCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccC
Confidence            99999 6699999999999999976544 44454 455999999999987 89999999999999999998887777899


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      .-.|.++.|+|..+ ++++|+.|..|++||.+++         .++.++..|+..|..+.|+|++ ++|+|+|.|..+++
T Consensus       222 gwdVksvdWHP~kg-LiasgskDnlVKlWDprSg---------~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv  290 (464)
T KOG0284|consen  222 GWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSG---------SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKV  290 (464)
T ss_pred             CCCcceeccCCccc-eeEEccCCceeEeecCCCc---------chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEE
Confidence            99999999999754 8999999999999999998         8899999999999999999998 99999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      ||+++.+  -++.+.+|...|+++.|+|-...+|++||.||.|..|.+...+.+.
T Consensus       291 ~DiR~mk--El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~  343 (464)
T KOG0284|consen  291 FDIRTMK--ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG  343 (464)
T ss_pred             EehhHhH--HHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence            9999665  5778889999999999999888899999999999999998555443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.1e-33  Score=241.66  Aligned_cols=287  Identities=17%  Similarity=0.270  Sum_probs=237.5

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|..+|..+.|+|+|.++|+|+.+.   .+-+|...........+..|...+     +-+.|       .++++.|+++
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr---~I~LWnv~gdceN~~~lkgHsgAV-----M~l~~-------~~d~s~i~S~  108 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDR---AIVLWNVYGDCENFWVLKGHSGAV-----MELHG-------MRDGSHILSC  108 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcc---eEEEEeccccccceeeecccccee-----Eeeee-------ccCCCEEEEe
Confidence            56899999999999999999999997   334444333332112233333222     45555       6899999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|.+|+.||+.++....                           .+++|..-|+++.-+.-|..++.||+.|++++|||
T Consensus       109 gtDk~v~~wD~~tG~~~r---------------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D  161 (338)
T KOG0265|consen  109 GTDKTVRGWDAETGKRIR---------------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD  161 (338)
T ss_pred             cCCceEEEEecccceeee---------------------------hhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence            999999999998755433                           45589999999997777778999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      +++..+++++. ....++++.|...+ ..+++|+-|+.|++||+|.......+.+|...|+.+..+|.|. ++++-+.|.
T Consensus       162 ~R~k~~~~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~  238 (338)
T KOG0265|consen  162 IRKKEAIKTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDN  238 (338)
T ss_pred             ecccchhhccc-cceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccc
Confidence            99998888886 46789999999988 7899999999999999999999888899999999999999876 789999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccC----CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      ++++||+|.....     ..++..+.+|.    .....++|+|++ ..+.+|+.|..+++||.....  .++.+++|.+.
T Consensus       239 tvrvwd~rp~~p~-----~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gs  310 (338)
T KOG0265|consen  239 TVRVWDVRPFAPS-----QRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRR--ILYKLPGHYGS  310 (338)
T ss_pred             eEEEEEecccCCC-----CceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeeccccc--EEEEcCCccee
Confidence            9999999976331     24456665553    345678999998 899999999999999998876  78899999999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          452 VFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       452 v~~~~~spd~~~ll~sg~~dg~i~v  476 (502)
                      |.++.|+|..+ +|.+++.|.+|++
T Consensus       311 vn~~~Fhp~e~-iils~~sdk~i~l  334 (338)
T KOG0265|consen  311 VNEVDFHPTEP-IILSCSSDKTIYL  334 (338)
T ss_pred             EEEeeecCCCc-EEEEeccCceeEe
Confidence            99999999999 6888999999876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.8e-34  Score=253.62  Aligned_cols=240  Identities=26%  Similarity=0.419  Sum_probs=218.0

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      ++.|...+|++|+.|++|.|||+.++                           .++..+.||...|..+++++-. .+|+
T Consensus       158 avdP~n~wf~tgs~DrtikIwDlatg---------------------------~LkltltGhi~~vr~vavS~rH-pYlF  209 (460)
T KOG0285|consen  158 AVDPGNEWFATGSADRTIKIWDLATG---------------------------QLKLTLTGHIETVRGVAVSKRH-PYLF  209 (460)
T ss_pred             eeCCCceeEEecCCCceeEEEEcccC---------------------------eEEEeecchhheeeeeeecccC-ceEE
Confidence            34788999999999999999999873                           4445667999999999999984 4999


Q ss_pred             EEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748          284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       284 sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  363 (502)
                      +++.|+.|+.||+...+.++.+.+|-+.|.|++.+|.- ..|++|+.|.++++||+|+...+..+.+|...|.++.+.|.
T Consensus       210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT  288 (460)
T ss_pred             EecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence            99999999999999999999999999999999999998 89999999999999999999988888899999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      ++ .+++|+.|++|++||++.+         +....+..|...|.+++.+|.- ..+|+++.|. |+-|++..+.  .+.
T Consensus       289 dp-qvit~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g~--f~~  354 (460)
T KOG0285|consen  289 DP-QVITGSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEGE--FLQ  354 (460)
T ss_pred             CC-ceEEecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCccc--hhh
Confidence            77 6999999999999999997         7788899999999999999976 8888888875 9999999887  566


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+.+|.+-|++++...|+  ++++|+.+|.|.+||.+++...++.
T Consensus       355 nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  355 NLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             ccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccc
Confidence            688999999999999998  5889999999999999998876544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1e-32  Score=247.64  Aligned_cols=292  Identities=21%  Similarity=0.322  Sum_probs=241.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      -.|++.|.+++..  +..|++|+.++   .++||.......   ..+..|..++    ..+.|+.-    .+....|+++
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg---~~riWd~~Gk~~---~~~~Ght~~i----k~v~~v~~----n~~~~~fvsa  165 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDG---TSRIWDLKGKSI---KTIVGHTGPI----KSVAWVIK----NSSSCLFVSA  165 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCC---eeEEEecCCceE---EEEecCCcce----eeeEEEec----CCccceEEEe
Confidence            3588999999999  88999999998   557776655443   5666666555    45677632    2335589999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      ++|.++++|.++.++.+..                       ......||...|-+++..++ +.++++||.|.+|+||+
T Consensus       166 s~Dqtl~Lw~~~~~~~~~~-----------------------~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs  221 (423)
T KOG0313|consen  166 SMDQTLRLWKWNVGENKVK-----------------------ALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWS  221 (423)
T ss_pred             cCCceEEEEEecCchhhhh-----------------------HHhHhcccccceeEEEecCC-CCeEEeecccceeeecc
Confidence            9999999999986554322                       11122399999999999999 67999999999999999


Q ss_pred             CC-------------------------CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe
Q 010748          296 VA-------------------------AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       296 ~~-------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  350 (502)
                      ..                         ++.++.++.+|..+|.++.|++.  ..+++++.|.+|+.||+.++.... ...
T Consensus       222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~-~~~  298 (423)
T KOG0313|consen  222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS-TLT  298 (423)
T ss_pred             cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee-eee
Confidence            32                         22456788999999999999994  589999999999999999988766 455


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      ....+.|+..+|.. .++++|+.|..+++||.|++..      ....+++.+|+..|.++.|+|....+|++|+.|++++
T Consensus       299 ~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  299 TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence            67789999999964 5899999999999999999843      4567889999999999999999989999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      +||+++.+. +++.+.+|...|.++.|...+  ++++||.|.+|+|+.-.
T Consensus       372 lWDvRS~k~-plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  372 LWDVRSTKA-PLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEeccCCC-cceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence            999998762 578889999999999998765  59999999999998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.1e-32  Score=289.53  Aligned_cols=295  Identities=18%  Similarity=0.224  Sum_probs=228.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--C---CCCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--G---DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      .|...|.+++|+|++++||+|+.++   .++||.......  .   .+.....+    .....++.|.      ++.+++
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~---~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~------~~~~~~  547 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNK---KIKIFECESIIKDGRDIHYPVVELAS----RSKLSGICWN------SYIKSQ  547 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCC---EEEEEECCcccccccccccceEEecc----cCceeeEEec------cCCCCE
Confidence            3788899999999999999999887   566666542110  0   00111111    1223566774      235889


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      ||+|+.||+|+|||+.+..                           ....+.+|...|++++|+|..+.+|++|+.||+|
T Consensus       548 las~~~Dg~v~lWd~~~~~---------------------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v  600 (793)
T PLN00181        548 VASSNFEGVVQVWDVARSQ---------------------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV  600 (793)
T ss_pred             EEEEeCCCeEEEEECCCCe---------------------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEE
Confidence            9999999999999997532                           2224457999999999998547799999999999


Q ss_pred             EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-ccceEeecCCeeEEEeCCCCCCEEEE
Q 010748          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~~~  370 (502)
                      ++||+.++.++..+..+ ..|.++.|++..+.+|++|+.||.|++||++.... ......|...|.++.|.+ + ..+++
T Consensus       601 ~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~-~~lvs  677 (793)
T PLN00181        601 KLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-S-STLVS  677 (793)
T ss_pred             EEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-C-CEEEE
Confidence            99999999998888754 68999999765448999999999999999987653 334457888999999974 3 47999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE------
Q 010748          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS------  444 (502)
Q Consensus       371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~------  444 (502)
                      ++.|+.|++||++......   ...++..+.+|...+.+++|+|++ .+|++|+.|+.|++|+.....+...+.      
T Consensus       678 ~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~  753 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP  753 (793)
T ss_pred             EECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence            9999999999998642100   025677889999999999999997 899999999999999987665332222      


Q ss_pred             -----ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          445 -----RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       445 -----~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                           ...+...|.+++|+|++. +|++|+.+|.|+||++
T Consensus       754 ~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~  792 (793)
T PLN00181        754 VSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM  792 (793)
T ss_pred             ccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence                 123456799999999999 5889999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1e-31  Score=253.69  Aligned_cols=283  Identities=30%  Similarity=0.492  Sum_probs=230.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.|+|++++|++++.++   .+.+|.+.....  ......|...    ..++.|       ++++++|++++
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g---~i~i~~~~~~~~--~~~~~~~~~~----i~~~~~-------~~~~~~l~~~~   70 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDG---TIKVWDLETGEL--LRTLKGHTGP----VRDVAA-------SADGTYLASGS   70 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCc---EEEEEEeeCCCc--EEEEecCCcc----eeEEEE-------CCCCCEEEEEc
Confidence            4788999999999999999998776   556666654321  1111122111    135566       67889999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .+|.|++|++.....                           ...+..|...|.++.|+++ +.++++++.++.|++||+
T Consensus        71 ~~~~i~i~~~~~~~~---------------------------~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          71 SDKTIRLWDLETGEC---------------------------VRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             CCCeEEEEEcCcccc---------------------------eEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEEC
Confidence            999999999975321                           1233468889999999998 568888888999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      .+++....+..|...|.++.|+|++ .++++++.++.|++||++..+.......+...+.++.|+|++. .+++++.+|.
T Consensus       123 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~  200 (289)
T cd00200         123 ETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGT  200 (289)
T ss_pred             CCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEecCCCc
Confidence            9999999999999999999999997 7888888899999999998777666667777899999999875 6777778999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      |++||++..         ..+..+..|...+.++.|+|++ .++++++.+|.|++|++.+++  ....+..|...|.+++
T Consensus       201 i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~  268 (289)
T cd00200         201 IKLWDLSTG---------KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLA  268 (289)
T ss_pred             EEEEECCCC---------ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce--eEEEccccCCcEEEEE
Confidence            999999875         5566666888899999999985 888888889999999998876  4555568888999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEE
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      |+|++. .|++++.||.|++|+
T Consensus       269 ~~~~~~-~l~~~~~d~~i~iw~  289 (289)
T cd00200         269 WSPDGK-RLASGSADGTIRIWD  289 (289)
T ss_pred             ECCCCC-EEEEecCCCeEEecC
Confidence            999988 588999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-33  Score=270.33  Aligned_cols=290  Identities=22%  Similarity=0.351  Sum_probs=242.4

Q ss_pred             Ccccccccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          138 DSEDLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      -.++|.+|+|. |..+.||+|++..   .+++|.......   .++..|+-.+    +.+.-       ..+|-+||+|+
T Consensus       322 ~ndEI~Dm~~lG~e~~~laVATNs~---~lr~y~~~~~~c---~ii~GH~e~v----lSL~~-------~~~g~llat~s  384 (775)
T KOG0319|consen  322 YNDEILDMKFLGPEESHLAVATNSP---ELRLYTLPTSYC---QIIPGHTEAV----LSLDV-------WSSGDLLATGS  384 (775)
T ss_pred             CchhheeeeecCCccceEEEEeCCC---ceEEEecCCCce---EEEeCchhhe----eeeee-------cccCcEEEEec
Confidence            35689999987 8899999999887   567775444444   3554444333    34431       24678999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .|.++++|.++.....                       ........+|+..|.+++++..+..+|+++|.|+++++|++
T Consensus       385 KD~svilWr~~~~~~~-----------------------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  385 KDKSVILWRLNNNCSK-----------------------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             CCceEEEEEecCCcch-----------------------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence            9999999998532221                       22223445899999999999988899999999999999999


Q ss_pred             CCCee-----e----EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748          297 AAGKC-----N----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       297 ~~~~~-----~----~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  367 (502)
                      ...+.     +    .+...|...|+|++.+|+. .+++|||.|++.++|++........+.+|...|.||.|+|... +
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~  519 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-L  519 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc-e
Confidence            76221     1    1335699999999999999 9999999999999999998887888889999999999999754 8


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                      +++++.|++|+||.+.+.         .++.++.+|+..|..+.|-.++ ..|++++.||.|++|+++++.  |..++..
T Consensus       520 laT~SgD~TvKIW~is~f---------SClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e--C~~tlD~  587 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTF---------SCLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE--CEMTLDA  587 (775)
T ss_pred             eEeccCCceEEEEEeccc---------eeeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh--hhhhhhh
Confidence            999999999999999997         8999999999999999999998 899999999999999999998  8999999


Q ss_pred             CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      |...|++++.+|... +++||+.||.|.+|.=-+.
T Consensus       588 H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  588 HNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             ccceeEEEeecCccc-eeEecCCCeEEEEeecCcH
Confidence            999999999999998 6999999999999965443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=273.23  Aligned_cols=286  Identities=22%  Similarity=0.366  Sum_probs=232.1

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCC-CCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      +...|.++.|+|+|+.+++++.++   .+.+|...... .....+..|+..+     .+++|       +|+++++++|+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~---~i~~~~~~~~~~~~~~~l~~h~~~v-----~~~~f-------s~d~~~l~s~s  222 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDG---LIRIWKLEGIKSNLLRELSGHTRGV-----SDVAF-------SPDGSYLLSGS  222 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCC---cEEEeecccccchhhccccccccce-----eeeEE-------CCCCcEEEEec
Confidence            467899999999999999998887   55777663332 1112232333222     45555       89999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .|++|+|||+...                          ......+.+|...|++++|+|.+ +++++|+.|++|+|||+
T Consensus       223 ~D~tiriwd~~~~--------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~  275 (456)
T KOG0266|consen  223 DDKTLRIWDLKDD--------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDV  275 (456)
T ss_pred             CCceEEEeeccCC--------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEec
Confidence            9999999999321                          23344566999999999999996 89999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC--ccceEeecC--CeeEEEeCCCCCCEEEEEe
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAA--DVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~--~v~~v~~~~~~~~~~~~~~  372 (502)
                      ++++++..+.+|...|++++|++++ ++|++++.|+.|++||+.++..  ......+..  .+.+++|+|++. ++++++
T Consensus       276 ~~~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~  353 (456)
T KOG0266|consen  276 RTGECVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSAS  353 (456)
T ss_pred             cCCeEEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEec
Confidence            9999999999999999999999999 8999999999999999999883  333333333  599999999876 899999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCccceEEeccCCC---eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-
Q 010748          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA---VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-  448 (502)
Q Consensus       373 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-  448 (502)
                      .|+.+++||++..         ..+....+|...   +.+..+++.+ .++++|+.|+.|++|++.++.  .+..+.+| 
T Consensus       354 ~d~~~~~w~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~--~~~~l~~h~  421 (456)
T KOG0266|consen  354 LDRTLKLWDLRSG---------KSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGG--ILQRLEGHS  421 (456)
T ss_pred             CCCeEEEEEccCC---------cceeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccc--hhhhhcCCC
Confidence            9999999999987         667777777764   3344456666 999999999999999999876  46667778 


Q ss_pred             CCcEEEEEEcCCCCcEEEEEe--CCCcEEEEECC
Q 010748          449 AGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTL  480 (502)
Q Consensus       449 ~~~v~~~~~spd~~~ll~sg~--~dg~i~vwd~~  480 (502)
                      ...+..+.++|... ++++++  .|+.+++|...
T Consensus       422 ~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  422 KAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence            88999999999998 588887  68899999753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-32  Score=260.04  Aligned_cols=286  Identities=20%  Similarity=0.303  Sum_probs=239.2

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +.+.|.++.|||+...++++-..|   .+.||.|++...    ....+   +...|...      ..|-...+++++|+.
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG---~V~IWnyetqtm----Vksfe---V~~~PvRa------~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNG---DVQIWNYETQTM----VKSFE---VSEVPVRA------AKFIARKNWIVTGSD   75 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecC---eeEEEeccccee----eeeee---ecccchhh------heeeeccceEEEecC
Confidence            678899999999999999999888   569999987652    22222   22222221      112356889999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      |..||||++++++.                           ...+..|.+-|.||+.+|. ..+++|+|.|-+|++||.+
T Consensus        76 D~~IrVfnynt~ek---------------------------V~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we  127 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEK---------------------------VKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWE  127 (794)
T ss_pred             CceEEEEeccccee---------------------------eEEeeccccceeeeeecCC-CCeEEecCCccEEEEeecc
Confidence            99999999987543                           3456789999999999999 5599999999999999997


Q ss_pred             CC-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC-CCEEEEEeCCC
Q 010748          298 AG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-EHSFVVSLEDG  375 (502)
Q Consensus       298 ~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~~dg  375 (502)
                      .. .|.++|.+|+..|.+++|+|..++.+++++.|++|++|.+.++.+...+.+|...|+|+.+-+-+ .-++++|+.|.
T Consensus       128 ~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  128 NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence            65 78999999999999999999999999999999999999999998888888999999999998754 23899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|++||.++.         .++.++.+|...|+.+.|+|.- -+++|||.||++|||+..+.+  ...++......|+|+
T Consensus       208 tiKvWDyQtk---------~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~--lE~tLn~gleRvW~I  275 (794)
T KOG0276|consen  208 TIKVWDYQTK---------SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYK--LEKTLNYGLERVWCI  275 (794)
T ss_pred             eEEEeecchH---------HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCccee--hhhhhhcCCceEEEE
Confidence            9999999997         8999999999999999999987 799999999999999988876  455566667889999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          456 AFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       456 ~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +-.+.+. .++.|...|.|. ..+..
T Consensus       276 ~~~k~~~-~i~vG~Deg~i~-v~lgr  299 (794)
T KOG0276|consen  276 AAHKGDG-KIAVGFDEGSVT-VKLGR  299 (794)
T ss_pred             eecCCCC-eEEEeccCCcEE-EEccC
Confidence            9988887 477776666543 34433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.1e-31  Score=248.39  Aligned_cols=324  Identities=16%  Similarity=0.262  Sum_probs=245.8

Q ss_pred             CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      ..+|..-|.|+.|+|+|.++++++.++     ++++|+...+.....+. ......+-.+.+.|       +||+..+++
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDg-----ki~iyDGktge~vg~l~-~~~aHkGsIfalsW-------sPDs~~~~T  252 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDG-----KIYIYDGKTGEKVGELE-DSDAHKGSIFALSW-------SPDSTQFLT  252 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCc-----cEEEEcCCCccEEEEec-CCCCccccEEEEEE-------CCCCceEEE
Confidence            356889999999999999999999999     99999987762211111 01122233478888       899999999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchh------hhhh----------ccccCCcccccccccCcccceeeEEeccCC
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKK----------KSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  278 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~----------~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  278 (502)
                      ++.|.+++|||+.+.........-.....+      ++..          .--..........+.+|...|++|..+|++
T Consensus       253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~  332 (603)
T KOG0318|consen  253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG  332 (603)
T ss_pred             ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence            999999999999887555443322221111      0000          000011223556778999999999999995


Q ss_pred             CcEEEEEecCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc----------
Q 010748          279 RNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----------  347 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------  347 (502)
                       .+|++|+.||.|.-|+..++..-+.. ++|+..|.+++-+..+  .+++++.|.++++.++........          
T Consensus       333 -~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~  409 (603)
T KOG0318|consen  333 -KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK  409 (603)
T ss_pred             -CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence             79999999999999999998776554 7899999999988755  588999999999997642111000          


Q ss_pred             ---------------------e--------EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce
Q 010748          348 ---------------------K--------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF  398 (502)
Q Consensus       348 ---------------------~--------~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  398 (502)
                                           +        ....-...+++++|++. .+++|+.||.|++|.+.....       ....
T Consensus       410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l-------~ee~  481 (603)
T KOG0318|consen  410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDEL-------KEEA  481 (603)
T ss_pred             eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-EEEEecccceEEEEEecCCcc-------ccee
Confidence                                 0        01122457889999765 899999999999999987631       3445


Q ss_pred             EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .+..|.++|++++|+|++ .+||+|...+.+.+||+.+.+. .......|.+.|.|++|+|+.. ++|+|+.|..|.||+
T Consensus       482 ~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  482 KLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYS  558 (603)
T ss_pred             eeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEE
Confidence            667899999999999998 9999999999999999998875 3444456899999999999998 799999999999999


Q ss_pred             CCCCccc
Q 010748          479 TLSDAGI  485 (502)
Q Consensus       479 ~~~~~~~  485 (502)
                      +......
T Consensus       559 v~kP~~~  565 (603)
T KOG0318|consen  559 VKKPAKH  565 (603)
T ss_pred             ccChhhh
Confidence            9775544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-32  Score=264.65  Aligned_cols=297  Identities=23%  Similarity=0.330  Sum_probs=243.5

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      .+++..+...+....+++.+.+.     .+..|+..+... ..+.+.|+.+     +.+.++      .|..++||+++.
T Consensus       281 ~~e~~~~~~~~~~~~~l~vtaeQ-----nl~l~d~~~l~i~k~ivG~ndEI-----~Dm~~l------G~e~~~laVATN  344 (775)
T KOG0319|consen  281 SEEIDHLLAIESMSQLLLVTAEQ-----NLFLYDEDELTIVKQIVGYNDEI-----LDMKFL------GPEESHLAVATN  344 (775)
T ss_pred             chhhhcceeccccCceEEEEccc-----eEEEEEccccEEehhhcCCchhh-----eeeeec------CCccceEEEEeC
Confidence            34477777777777777777776     555665444311 1233445444     445554      678899999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      .+.+|+|++.+..+.                            .+.||+..|++|..... +.+|+|||.|+++++|.++
T Consensus       345 s~~lr~y~~~~~~c~----------------------------ii~GH~e~vlSL~~~~~-g~llat~sKD~svilWr~~  395 (775)
T KOG0319|consen  345 SPELRLYTLPTSYCQ----------------------------IIPGHTEAVLSLDVWSS-GDLLATGSKDKSVILWRLN  395 (775)
T ss_pred             CCceEEEecCCCceE----------------------------EEeCchhheeeeeeccc-CcEEEEecCCceEEEEEec
Confidence            999999988765543                            34589999999995555 4699999999999999885


Q ss_pred             CC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc--c-------ceEeecCCeeEEEeCCCC
Q 010748          298 AG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--G-------FKWAVAADVESLAWDPHA  364 (502)
Q Consensus       298 ~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~-------~~~~~~~~v~~v~~~~~~  364 (502)
                      .+    -++....+|+..|.+++++..+..+|+++|.|+++++|++...+..  .       ....|...|+|++.+|+.
T Consensus       396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd  475 (775)
T KOG0319|consen  396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND  475 (775)
T ss_pred             CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence            44    3456668999999999999999999999999999999999872211  1       123578899999999976


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . ++++|+.|.+.++|++...         .....+.+|+..|.++.|+|.. ++++|+|.|++|+||.+.+..  |+.+
T Consensus       476 k-LiAT~SqDktaKiW~le~~---------~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS--ClkT  542 (775)
T KOG0319|consen  476 K-LIATGSQDKTAKIWDLEQL---------RLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS--CLKT  542 (775)
T ss_pred             c-eEEecccccceeeecccCc---------eEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce--eeee
Confidence            5 9999999999999999965         7889999999999999999987 999999999999999999887  9999


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      +.+|...|..+.|-.++.+ |++++.||.|++|+++++.|+.++-.|..+
T Consensus       543 ~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt~eC~~tlD~H~Dr  591 (775)
T KOG0319|consen  543 FEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKTNECEMTLDAHNDR  591 (775)
T ss_pred             ecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccchhhhhhhhhccce
Confidence            9999999999999999995 889999999999999999999988777543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=6.1e-32  Score=248.61  Aligned_cols=251  Identities=22%  Similarity=0.389  Sum_probs=216.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +.+.+++|+++..+.|.|||..........                 .....+...+.+|...-.+|+|++.....|++|
T Consensus       134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----------------~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKA-----------------SGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             CCCCcEEEecCCCCCEEEEEeccCCCcccc-----------------cccCCCceEEEeecccccccccccccceeEeec
Confidence            346888999999999999998754332210                 002344556778999899999999977799999


Q ss_pred             ecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC--CCCccceEeecCCee
Q 010748          286 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGFKWAVAADVE  356 (502)
Q Consensus       286 s~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~  356 (502)
                      +.|++|++||+...       .+...+.+|...|..++|++....+|++++.|+.+.|||+|+  .+.......|.+.+.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            99999999999754       235567899999999999999989999999999999999995  444555668899999


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      |++|+|.+..+|++|+.|++|++||+|+.        ..++.++.+|...|.+|.|+|+...+||+++.|+.+.|||+..
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            99999999999999999999999999998        5789999999999999999999989999999999999999864


Q ss_pred             ------------CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          437 ------------NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       437 ------------~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                                  +.+.+++...+|...|..+.|+|..+++|++.+.|+.+.||.+..
T Consensus       349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                        234567899999999999999999999999999999999999863

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-31  Score=229.04  Aligned_cols=283  Identities=21%  Similarity=0.389  Sum_probs=223.2

Q ss_pred             CCCccccccccccCC-CceEEEEEecCCcceeEEEEEecCCCCCCCeeee------eccccCCCcceeeeecCCCCCCCC
Q 010748          136 DEDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH------HHIIIPAFPLCMAWLDCPLKDREK  208 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~s~~  208 (502)
                      +.|.+.+-.++|+|- |.+||+++.+.   .++||.... ..   .+...      |...+    -.++|       +|.
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk---~vriw~~~~-~~---s~~ck~vld~~hkrsV----RsvAw-------sp~   72 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDK---AVRIWSTSS-GD---SWTCKTVLDDGHKRSV----RSVAW-------SPH   72 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCc---eEEEEecCC-CC---cEEEEEeccccchhee----eeeee-------cCC
Confidence            347778999999999 99999999887   456665553 11   22211      22222    35566       899


Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      |++||+|+.|.++.||.-...                         .......+.||...|.|++|+++ +++||+||.|
T Consensus        73 g~~La~aSFD~t~~Iw~k~~~-------------------------efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRD  126 (312)
T KOG0645|consen   73 GRYLASASFDATVVIWKKEDG-------------------------EFECVATLEGHENEVKCVAWSAS-GNYLATCSRD  126 (312)
T ss_pred             CcEEEEeeccceEEEeecCCC-------------------------ceeEEeeeeccccceeEEEEcCC-CCEEEEeeCC
Confidence            999999999999999975421                         13334566799999999999999 6699999999


Q ss_pred             CcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC---CCccceEeecCCeeEEEeCC
Q 010748          289 KQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       289 g~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~  362 (502)
                      +.|.||.+..+   .+...++.|+..|..+.|||.. .+|+++++|.+|++|.-...   .+...+..+...|.+++|++
T Consensus       127 KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~  205 (312)
T KOG0645|consen  127 KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN  205 (312)
T ss_pred             CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence            99999998744   6888999999999999999998 89999999999999987632   23455567778999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--e-
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P-  439 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--~-  439 (502)
                      .|. .+++++.|++|+||-..+.         -    -..|+..+..+.|. +  ..|++++.|+.|+||.-...-  + 
T Consensus       206 ~G~-rl~s~sdD~tv~Iw~~~~~---------~----~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~  268 (312)
T KOG0645|consen  206 IGS-RLVSCSDDGTVSIWRLYTD---------L----SGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPS  268 (312)
T ss_pred             CCc-eEEEecCCcceEeeeeccC---------c----chhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCch
Confidence            875 7999999999999987643         1    12478889999999 3  689999999999999766421  1 


Q ss_pred             --eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          440 --SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       440 --~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                        ........|...|++++|.|..+.+|++||.||.|++|.+.
T Consensus       269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence              11223456888999999999655579999999999999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=242.86  Aligned_cols=290  Identities=16%  Similarity=0.293  Sum_probs=233.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la  213 (502)
                      .+|.++|.-++|+++|++||+|+.+.   +.-||.......  ....+..|+..+     ..+.|       |||.++|+
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh~~~V-----~yi~w-------SPDdryLl  285 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGHSQPV-----SYIMW-------SPDDRYLL  285 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecccCce-----EEEEE-------CCCCCeEE
Confidence            57999999999999999999999886   456665544331  011223344333     46677       89999999


Q ss_pred             EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      +++.+..+.+||+.+++.....                          ..+|...+.+++|.|+ +..+++|+.|+++..
T Consensus       286 aCg~~e~~~lwDv~tgd~~~~y--------------------------~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~  338 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRHLY--------------------------PSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIM  338 (519)
T ss_pred             ecCchHheeeccCCcchhhhhc--------------------------ccCcCCCcceeEEccC-CceeEecCCCCcEEE
Confidence            9999999999999987654321                          1246688999999999 568999999999999


Q ss_pred             EeCCCCeeeEeeccC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe
Q 010748          294 WDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       294 wd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~  372 (502)
                      ||+. |......++- ...|.+++..++| .++++.+.|..|++++..+..... ......+|++++.+.++. ++++.-
T Consensus       339 wdlD-gn~~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k-~~LvnL  414 (519)
T KOG0293|consen  339 WDLD-GNILGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGK-LALVNL  414 (519)
T ss_pred             ecCC-cchhhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCc-EEEEEc
Confidence            9986 4444445443 2579999999999 888888899999999998765543 456678899999999865 888888


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCccceEEeccCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010748          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       373 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      .+..+++||+...         ..+..+.+|...  +..-+|.-....++++||.|+.|+||+..+++  ++..+.+|..
T Consensus       415 ~~qei~LWDl~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs~  483 (519)
T KOG0293|consen  415 QDQEIHLWDLEEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHSK  483 (519)
T ss_pred             ccCeeEEeecchh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc--eeEeecCCcc
Confidence            9999999999965         777888888754  44445655445799999999999999999998  6888999999


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      .|+|++|+|..+++||+||.||+|+||-....
T Consensus       484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  484 TVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999999999999999999999999987643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.2e-32  Score=252.79  Aligned_cols=289  Identities=16%  Similarity=0.294  Sum_probs=239.4

Q ss_pred             CCCccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          136 DEDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      ..|...|+++.|.| .+.+|++++.++   .++||.+..... ....|.+|..++    ..+.|       +++|..+++
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~---~vklW~vy~~~~-~lrtf~gH~k~V----rd~~~-------s~~g~~fLS  275 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDG---LVKLWNVYDDRR-CLRTFKGHRKPV----RDASF-------NNCGTSFLS  275 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCc---eEEEEEEecCcc-eehhhhcchhhh----hhhhc-------cccCCeeee
Confidence            57999999999999 899999999997   556665554332 234456665554    33444       788999999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      ++.|+.|++||++++.+...+.                            -...++|+.|+|++.+.+++|+.|+.|+.|
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~----------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w  327 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFH----------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQW  327 (503)
T ss_pred             eecceeeeeeccccceEEEEEe----------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence            9999999999999877654321                            235689999999988999999999999999


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCCCEEEEEeC
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      |+++++.++.+..|-+.|..+.|-+.+ ..+++++.|++++||+.+.+....... .......|+..+|+++ .+++-+.
T Consensus       328 DiRs~kvvqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~  405 (503)
T KOG0282|consen  328 DIRSGKVVQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSM  405 (503)
T ss_pred             eccchHHHHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhcc
Confidence            999999999999999999999999999 899999999999999999887654333 3345678899999876 7888899


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      ++.|.+|.+.....      ......+.+|.  +.-+.+.|||+| .+|++|..||.+.+||.++.+  .+..+..|.++
T Consensus       406 dN~i~ifs~~~~~r------~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~~  476 (503)
T KOG0282|consen  406 DNYIAIFSTVPPFR------LNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQP  476 (503)
T ss_pred             CceEEEEecccccc------cCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhh--hhhccccCCcc
Confidence            99999999765421      23344556664  567889999998 999999999999999999887  57778889999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          452 VFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       452 v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      +..+.|+|..+..+||+|.+|.|++|+
T Consensus       477 ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  477 CIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEEecCCCcceeEecccCceeEecC
Confidence            999999999888899999999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-32  Score=230.95  Aligned_cols=220  Identities=23%  Similarity=0.396  Sum_probs=198.6

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCC-CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      -.+.+..++|++...+.+++++.||+++|||+.. .++++.++.|...|.++.|++.....++++|.|++|++|+...+.
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            4578999999999999999999999999999653 368889999999999999999888899999999999999999988


Q ss_pred             CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE
Q 010748          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .+..+.+|...|....|+|..+++|++++.||.+++||++..        .+. ..+..|...|.++.|+...+++|+||
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKF-MSIEAHNSEILCCDWSKYNHNVLATG  209 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC--------Cce-eEEEeccceeEeecccccCCcEEEec
Confidence            888888899999999999999999999999999999999987        234 44899999999999999888999999


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      +.|+.|++||+++.+ .++..+.+|.-.|+.+.|||....+||+++.|-+++|||...+....+...++..
T Consensus       210 ~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE  279 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE  279 (311)
T ss_pred             CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce
Confidence            999999999999876 4688889999999999999998889999999999999999987776666655543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-30  Score=252.49  Aligned_cols=322  Identities=18%  Similarity=0.283  Sum_probs=252.2

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCC--cceeeeecCCCCCCCCCCEEEEec
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      ...|.+++|||+|+++|+|+..    .++||..-.......+.++.|...+..+  ..++.|       +.|.++|++|+
T Consensus        96 k~~v~~i~fSPng~~fav~~gn----~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~W-------s~DSr~l~~gs  164 (893)
T KOG0291|consen   96 KRGVGAIKFSPNGKFFAVGCGN----LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDW-------SDDSRLLVTGS  164 (893)
T ss_pred             cCccceEEECCCCcEEEEEecc----eeEEEecCcchhcccCcceEeeeecCCccceeEEEe-------ccCCceEEecc
Confidence            3578999999999999999866    4788876544432334555554444333  357777       78999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchh--------------------------h-hhhcccc-----------------
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEE--------------------------K-KKKKSKK-----------------  252 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~--------------------------~-~~~~~~~-----------------  252 (502)
                      .|-+++||.++..+.+.+....|-....                          . +.....+                 
T Consensus       165 rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~  244 (893)
T KOG0291|consen  165 RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG  244 (893)
T ss_pred             ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence            9999999999877765443332211110                          0 0000000                 


Q ss_pred             -------CCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEE
Q 010748          253 -------GKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL  325 (502)
Q Consensus       253 -------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  325 (502)
                             .-.+..++.+......|++.+|++. .++|++|-..|...+|.+....+++.+.-...+|..+.|+..| ..|
T Consensus       245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~-t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWi  322 (893)
T KOG0291|consen  245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKG-TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWI  322 (893)
T ss_pred             hhhhcceEEEEEEeeeecccccceeeeeccCC-ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEE
Confidence                   0011112333444478999999998 7899999999999999999999999998777899999999999 666


Q ss_pred             EEEeC-CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC
Q 010748          326 LSGSF-DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  404 (502)
Q Consensus       326 ~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~  404 (502)
                      +.|+. -|.+.+|+.++...+....+|...+++++++|+|. ++++|++||.|++||.+++         -+..++..|+
T Consensus       323 A~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg---------fC~vTFteHt  392 (893)
T KOG0291|consen  323 AFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG---------FCFVTFTEHT  392 (893)
T ss_pred             EEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCc---------eEEEEeccCC
Confidence            66654 58999999999988888889999999999999976 8999999999999999987         8899999999


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC------------------------------------------eeEE
Q 010748          405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ------------------------------------------PSCI  442 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~------------------------------------------~~~~  442 (502)
                      ..|+.+.|+..+ +.|++.+.||+|+.||+...+                                          ...+
T Consensus       393 s~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll  471 (893)
T KOG0291|consen  393 SGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL  471 (893)
T ss_pred             CceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence            999999999998 999999999999999986431                                          0123


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      -.+.+|.+||.+++|+|.+. +|++|+.|.+|++||+-.....
T Consensus       472 DiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~  513 (893)
T KOG0291|consen  472 DILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGT  513 (893)
T ss_pred             ehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCce
Confidence            34568999999999999999 7999999999999999776443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.6e-33  Score=245.25  Aligned_cols=277  Identities=20%  Similarity=0.376  Sum_probs=231.4

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ....|.|+++  ++..+++|..++   +++||..+.... ...|++|...+     +|+.+         +.+.|++|+.
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDn---TikiWD~n~~~c-~~~L~GHtGSV-----LCLqy---------d~rviisGSS  255 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDN---TIKIWDKNSLEC-LKILTGHTGSV-----LCLQY---------DERVIVSGSS  255 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccC---ceEEeccccHHH-HHhhhcCCCcE-----Eeeec---------cceEEEecCC
Confidence            3456777776  566788898886   678887665432 22455555444     78876         5779999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      |.+|+|||+++++++.                           .+.+|..+|..+.|+..   +++++|.|.++.|||+.
T Consensus       256 DsTvrvWDv~tge~l~---------------------------tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~  305 (499)
T KOG0281|consen  256 DSTVRVWDVNTGEPLN---------------------------TLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMA  305 (499)
T ss_pred             CceEEEEeccCCchhh---------------------------HHhhhcceeEEEEEeCC---EEEEecCCceeEEEecc
Confidence            9999999999866544                           44589999999999865   89999999999999998


Q ss_pred             CCe---eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748          298 AGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       298 ~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d  374 (502)
                      ...   +.+.+.+|...|..+.|+.   .++++++.|.+|++|++.+...+....+|...|.|+.+..   .++++|+.|
T Consensus       306 sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~---rlvVSGSSD  379 (499)
T KOG0281|consen  306 SPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSD  379 (499)
T ss_pred             CchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhccC---eEEEecCCC
Confidence            764   4456789999999999976   5899999999999999999999998899999999999863   489999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------eEEEEecC
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRNP  447 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-------~~~~~~~~  447 (502)
                      .+|++||+..+         .++..+.+|..-|.++.|..   ..+++|+.||+|+|||+.....       .|+.....
T Consensus       380 ntIRlwdi~~G---------~cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~  447 (499)
T KOG0281|consen  380 NTIRLWDIECG---------ACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE  447 (499)
T ss_pred             ceEEEEecccc---------HHHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence            99999999987         88999999999999999985   7899999999999999987532       36677778


Q ss_pred             CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      |.|.|+.+.|..-   .+++++.|.+|.|||+..+..-
T Consensus       448 hsgRVFrLQFD~f---qIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  448 HSGRVFRLQFDEF---QIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ccceeEEEeecce---EEEeccCCCeEEEEEcCCCCcc
Confidence            9999999999654   4778889999999999887654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.6e-31  Score=236.82  Aligned_cols=284  Identities=16%  Similarity=0.299  Sum_probs=235.4

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeee-eeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-HHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      ..|.+.|.++++.|-+.++++|+.++   +++||.+..+..   .+.. .|...       +.    .+++|+...||++
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~Dr---tikIwDlatg~L---kltltGhi~~-------vr----~vavS~rHpYlFs  210 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADR---TIKIWDLATGQL---KLTLTGHIET-------VR----GVAVSKRHPYLFS  210 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCc---eeEEEEcccCeE---EEeecchhhe-------ee----eeeecccCceEEE
Confidence            56899999999999999999999997   778888877654   2221 12111       11    1233788999999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      ++.|+.|+.|||..                           .+....+.||-..|+||+.+|. -..|++|+.|.+++||
T Consensus       211 ~gedk~VKCwDLe~---------------------------nkvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvW  262 (460)
T KOG0285|consen  211 AGEDKQVKCWDLEY---------------------------NKVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVW  262 (460)
T ss_pred             ecCCCeeEEEechh---------------------------hhhHHHhccccceeEEEecccc-ceeEEecCCcceEEEe
Confidence            99999999999974                           3445567799999999999998 5699999999999999


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d  374 (502)
                      |+++...+..+.+|..+|.++.+.|.+ ..+++|+.|++|++||++.++.......|...+.+++.+|.. +.|++++.|
T Consensus       263 DiRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-~~fASas~d  340 (460)
T KOG0285|consen  263 DIRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-NLFASASPD  340 (460)
T ss_pred             eecccceEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch-hhhhccCCc
Confidence            999999999999999999999999988 679999999999999999999888888999999999999963 456666554


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE-Ee--cC---C
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA-SR--NP---K  448 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~-~~--~~---~  448 (502)
                       .|+.|++..+         ..+..+.+|+.-|++++.+.+  .++++|+..|.+.+||.+++...... +.  .+   .
T Consensus       341 -nik~w~~p~g---------~f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s  408 (460)
T KOG0285|consen  341 -NIKQWKLPEG---------EFLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES  408 (460)
T ss_pred             -cceeccCCcc---------chhhccccccceeeeeeeccC--ceEEEcCCceEEEEEecCcCcccccccccccCCcccc
Confidence             6899999887         667779999999999999986  58999999999999999987521111 11  11   2


Q ss_pred             CCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       449 ~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      ...|++.+|...+. .|++|..|.+|++|.-
T Consensus       409 EagI~as~fDktg~-rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  409 EAGIFASCFDKTGS-RLITGEADKTIKMYKE  438 (460)
T ss_pred             ccceeEEeecccCc-eEEeccCCcceEEEec
Confidence            34689999999998 5999999999999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.9e-32  Score=241.17  Aligned_cols=244  Identities=21%  Similarity=0.300  Sum_probs=220.6

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |+|+-.++++++.|++|++||+.+++.                           ...++||++.|..|+|+.. +.+|++
T Consensus       116 ~hp~~~~v~~as~d~tikv~D~~tg~~---------------------------e~~LrGHt~sv~di~~~a~-Gk~l~t  167 (406)
T KOG0295|consen  116 FHPSEALVVSASEDATIKVFDTETGEL---------------------------ERSLRGHTDSVFDISFDAS-GKYLAT  167 (406)
T ss_pred             eccCceEEEEecCCceEEEEEccchhh---------------------------hhhhhccccceeEEEEecC-ccEEEe
Confidence            378899999999999999999987544                           3356799999999999998 569999


Q ss_pred             EecCCcEEEEeCCC-CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748          285 ASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       285 gs~dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  363 (502)
                      +|.|-.+++||..+ .++++.+.+|...|.++.|-|.| .++++++.|.+|+.|++.++-++..+.+|...|..+..+.+
T Consensus       168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D  246 (406)
T KOG0295|consen  168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD  246 (406)
T ss_pred             cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC
Confidence            99999999999987 57888889999999999999999 99999999999999999999998888899999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC--------------CCCEEEEEeCCCcE
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------------VPNLLATGSTDKMV  429 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--------------~~~~l~t~s~dg~i  429 (502)
                      |. ++++++.|.+|++|-+.+.         .+...+..|..+|-+++|.|.              +..++++++.|++|
T Consensus       247 Gt-i~As~s~dqtl~vW~~~t~---------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI  316 (406)
T KOG0295|consen  247 GT-IIASCSNDQTLRVWVVATK---------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI  316 (406)
T ss_pred             ee-EEEecCCCceEEEEEeccc---------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence            75 8999999999999999986         677788889999999999762              22599999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ++||+.++.  +++++.+|...|..++|+|.|+| |+++..|+++++||+.+..++.....
T Consensus       317 k~wdv~tg~--cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  317 KIWDVSTGM--CLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             EEEeccCCe--EEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceeeeccCC
Confidence            999999997  89999999999999999999997 88889999999999999999877653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.7e-31  Score=243.06  Aligned_cols=286  Identities=22%  Similarity=0.316  Sum_probs=226.8

Q ss_pred             CccccccccccCCCce-EEEEEecCCcceeEEEEEecCCCCCCC-eeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          138 DSEDLEDMTINPNDAV-IVCARNEDDVSHLEVYILEESDGGDPN-LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~-l~~~~~~~~~~~l~v~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      +.+.|.+++|+|...+ +|++++-      ++-+|......... +....+..     ..       +.|..||.+||+|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~------rvqly~~~~~~~~k~~srFk~~v-----~s-------~~fR~DG~LlaaG   86 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSV------RVQLYSSVTRSVRKTFSRFKDVV-----YS-------VDFRSDGRLLAAG   86 (487)
T ss_pred             ccCcceeEecCCCCCCceEEeccc------EEEEEecchhhhhhhHHhhccce-----eE-------EEeecCCeEEEcc
Confidence            4578999999998765 3444322      55555544321111 11122111     12       2236799999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      ...|.|+|||+.+                           ......+.+|+.+|..+.|+|.+..+|++|+.|+.+++||
T Consensus        87 D~sG~V~vfD~k~---------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   87 DESGHVKVFDMKS---------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             CCcCcEEEecccc---------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            9999999999643                           3445567799999999999999889999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      +.+......+.+|++.|.|.+|+|..+++++||++||.|++||+|..........|..+|.++.+-|.|. ++++++ ..
T Consensus       140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~iasAg-Gn  217 (487)
T KOG0310|consen  140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIASAG-GN  217 (487)
T ss_pred             cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEEcC-CC
Confidence            9999887789999999999999999988999999999999999999876666789999999999999765 455544 56


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|++||+.++        .+.+..+..|...|+|+++..++ ..|++|+-|+.|++||+.+.+  .+.... -.++|.++
T Consensus       218 ~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~K--vv~s~~-~~~pvLsi  285 (487)
T KOG0310|consen  218 SVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYK--VVHSWK-YPGPVLSI  285 (487)
T ss_pred             eEEEEEecCC--------ceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceE--EEEeee-cccceeeE
Confidence            8999999987        46666666799999999999987 999999999999999987776  344333 45899999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          456 AFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       456 ~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +.+|+++ .++.|..+|.+.+=+....+
T Consensus       286 avs~dd~-t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  286 AVSPDDQ-TVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             EecCCCc-eEEEecccceeeeehhhccc
Confidence            9999998 58889999988777544433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4e-32  Score=238.98  Aligned_cols=289  Identities=16%  Similarity=0.271  Sum_probs=242.2

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeee--ccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH--HIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ....++|..|+|+|++|++|+.++   .++||.|-.+.-+.-.-|.-.  -.+.....+|+.+       |.+...||+|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDG---FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-------SRDsEMlAsG  281 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDG---FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-------SRDSEMLASG  281 (508)
T ss_pred             cccchhheeeCCCCceEeeccccc---eeeeehhccchhhhhhhhhhhcceeecccceEEEee-------cccHHHhhcc
Confidence            346789999999999999999997   899999987654322223221  1223444578766       8899999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.||.|+||.+.++.++..+                          -..|+..|+|++|+.++ ..+++++.|.++++.-
T Consensus       282 sqDGkIKvWri~tG~ClRrF--------------------------drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHG  334 (508)
T KOG0275|consen  282 SQDGKIKVWRIETGQCLRRF--------------------------DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHG  334 (508)
T ss_pred             CcCCcEEEEEEecchHHHHh--------------------------hhhhccCeeEEEEccCc-chhhcccccceEEEec
Confidence            99999999999998876542                          23799999999999994 5788999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--ecCCeeEEEeCCCCCCEEEEEeC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      +.+|+++..|++|++.|+...|.++| +.+++++.||+|++|+..+..+...+..  ...+|.++-.-|.++..++++..
T Consensus       335 lKSGK~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr  413 (508)
T KOG0275|consen  335 LKSGKCLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR  413 (508)
T ss_pred             cccchhHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC
Confidence            99999999999999999999999999 8999999999999999999888764443  34578899999988889999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEecc---CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      .++|++.++..          +.+.++...   .+...+...+|.| .++++.+.|+.++.|.+.+++  +-.++..|..
T Consensus       414 sntv~imn~qG----------QvVrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~--LE~tl~VhEk  480 (508)
T KOG0275|consen  414 SNTVYIMNMQG----------QVVRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGK--LERTLPVHEK  480 (508)
T ss_pred             CCeEEEEeccc----------eEEeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCc--eeeeeecccc
Confidence            99999999874          455555433   3456677789998 999999999999999999998  5667777888


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .|..++-+|... +||+-+.||.+++|.
T Consensus       481 dvIGl~HHPHqN-llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  481 DVIGLTHHPHQN-LLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccccCcccc-hhhhhcccchhhhcC
Confidence            899999999988 799999999999995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=244.65  Aligned_cols=231  Identities=26%  Similarity=0.462  Sum_probs=204.1

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .+|+++         +...+++|..|.+|+|||.++..                           ....+.||++.|.||
T Consensus       200 VYClQY---------DD~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHtGSVLCL  243 (499)
T KOG0281|consen  200 VYCLQY---------DDEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHTGSVLCL  243 (499)
T ss_pred             eEEEEe---------cchhhhcccccCceEEeccccHH---------------------------HHHhhhcCCCcEEee
Confidence            367765         67789999999999999987633                           334567999999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc---cceE
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKW  349 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~  349 (502)
                      .|...   +|++||.|.+|+|||+++++++.++.+|...|..+.|+.   .++++++.|.++.+||+.++...   ..+.
T Consensus       244 qyd~r---viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLv  317 (499)
T KOG0281|consen  244 QYDER---VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLV  317 (499)
T ss_pred             eccce---EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHh
Confidence            99743   999999999999999999999999999999999999985   58999999999999999987643   3356


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      +|...|+.+.|+.   .++++++.|.+|++|++.+.         ..+.++.+|...|.|+.+.   ++++++|+.|.+|
T Consensus       318 GHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~---------efvRtl~gHkRGIAClQYr---~rlvVSGSSDntI  382 (499)
T KOG0281|consen  318 GHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTC---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTI  382 (499)
T ss_pred             hhhhheeeecccc---ceEEEecCCceEEEEeccce---------eeehhhhcccccceehhcc---CeEEEecCCCceE
Confidence            8889999999975   38999999999999999997         8899999999999999987   3899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      ++||+..+.  ++..+.+|..-|.|+.|...   .+++|+.||+|+|||+.++...
T Consensus       383 Rlwdi~~G~--cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  383 RLWDIECGA--CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             EEEeccccH--HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCC
Confidence            999999998  78888999999999999765   4899999999999999876543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=1.6e-30  Score=260.51  Aligned_cols=250  Identities=26%  Similarity=0.421  Sum_probs=213.1

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      .|+++|++|++++.++.|++|++.....                         .....+.+|...|.+++|+|+ +.+++
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~~~v~~~~fs~d-~~~l~  219 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHTRGVSDVAFSPD-GSYLL  219 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccccceeeeEECCC-CcEEE
Confidence            3489999999999999999999954321                         122233689999999999999 55999


Q ss_pred             EEecCCcEEEEeC-CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          284 SASADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       284 sgs~dg~v~vwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      +|+.|++|+|||+ ..+++++++.+|...|++++|+|.+ +++++|+.|++|++||++++++...+..|...|++++|++
T Consensus       220 s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~  298 (456)
T KOG0266|consen  220 SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP  298 (456)
T ss_pred             EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence            9999999999999 5568999999999999999999999 9999999999999999999888888889999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      ++. ++++++.||.|++||+.++..       .++..+..+...  ++++.|+|++ .++++++.|+.+++||+....  
T Consensus       299 d~~-~l~s~s~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~--  367 (456)
T KOG0266|consen  299 DGN-LLVSASYDGTIRVWDLETGSK-------LCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK--  367 (456)
T ss_pred             CCC-EEEEcCCCccEEEEECCCCce-------eeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc--
Confidence            876 788889999999999998721       034556665554  9999999998 999999999999999999887  


Q ss_pred             EEEEecCCCC---cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          441 CIASRNPKAG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       441 ~~~~~~~~~~---~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +.....+|..   .+.+...++.+.+ +++|+.|+.|++|++.++..+.+.-++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h~  421 (456)
T KOG0266|consen  368 SVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGHS  421 (456)
T ss_pred             ceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCCC
Confidence            5556666655   4455566788884 9999999999999999988887777773

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.98  E-value=3.2e-30  Score=219.34  Aligned_cols=282  Identities=17%  Similarity=0.263  Sum_probs=223.2

Q ss_pred             ccccccCcccceeccCCCCCCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccc
Q 010748          109 GVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII  188 (502)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~  188 (502)
                      .+.+|....|..+....-           .+..|+.+.+.|++++||+|+..    ++++|.++........-|..|..-
T Consensus        21 TIRfWqa~tG~C~rTiqh-----------~dsqVNrLeiTpdk~~LAaa~~q----hvRlyD~~S~np~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQH-----------PDSQVNRLEITPDKKDLAAAGNQ----HVRLYDLNSNNPNPVATFEGHTKN   85 (311)
T ss_pred             eeeeeehhcCeEEEEEec-----------CccceeeEEEcCCcchhhhccCC----eeEEEEccCCCCCceeEEeccCCc
Confidence            455666666666544321           35689999999999999999877    478887777665322223333211


Q ss_pred             cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748          189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      +    ..+       +|..+|+++++|+.||+++|||+....+.+                            ...|..+
T Consensus        86 V----taV-------gF~~dgrWMyTgseDgt~kIWdlR~~~~qR----------------------------~~~~~sp  126 (311)
T KOG0315|consen   86 V----TAV-------GFQCDGRWMYTGSEDGTVKIWDLRSLSCQR----------------------------NYQHNSP  126 (311)
T ss_pred             e----EEE-------EEeecCeEEEecCCCceEEEEeccCcccch----------------------------hccCCCC
Confidence            1    233       336789999999999999999997532221                            2257899


Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---  344 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---  344 (502)
                      |+++..+|+ ..-|++|..+|.|++||+.+..+.+.+. .....|+++...|+| .+|+.+...|.+++|++-....   
T Consensus       127 Vn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~  204 (311)
T KOG0315|consen  127 VNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASE  204 (311)
T ss_pred             cceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCcccc
Confidence            999999999 5689999999999999999988777663 345689999999999 8999999999999999876432   


Q ss_pred             ---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748          345 ---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       345 ---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                         +..+..|.+.+..+.++|++. ++++++.|.+++||+....        .+.-..+.+|...+...+||.++ .+|+
T Consensus       205 l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~--------~kle~~l~gh~rWvWdc~FS~dg-~Ylv  274 (311)
T KOG0315|consen  205 LEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF--------FKLELVLTGHQRWVWDCAFSADG-EYLV  274 (311)
T ss_pred             ceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc--------eeeEEEeecCCceEEeeeeccCc-cEEE
Confidence               223456788899999999865 8999999999999999876        36677889999999999999998 9999


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748          422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      ||+.|+.+++|++..++  .+....+|.....|++..
T Consensus       275 Tassd~~~rlW~~~~~k--~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  275 TASSDHTARLWDLSAGK--EVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ecCCCCceeecccccCc--eeeecCCcccccEEEEee
Confidence            99999999999999998  567778887777777653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.1e-30  Score=248.17  Aligned_cols=280  Identities=22%  Similarity=0.377  Sum_probs=231.4

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      .+=+.|+ ..+.|++|...      .||.|+...+   .+...++.. ...++++.|       +++|++||+|..+|.|
T Consensus       180 ~nlldWs-s~n~laValg~------~vylW~~~s~---~v~~l~~~~-~~~vtSv~w-------s~~G~~LavG~~~g~v  241 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVALGQ------SVYLWSASSG---SVTELCSFG-EELVTSVKW-------SPDGSHLAVGTSDGTV  241 (484)
T ss_pred             hhHhhcc-cCCeEEEEecc------eEEEEecCCC---ceEEeEecC-CCceEEEEE-------CCCCCEEEEeecCCeE
Confidence            4556777 67788888654      7888888776   333333222 555678888       7899999999999999


Q ss_pred             EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccC-cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~  300 (502)
                      .|||.......                           ..+.+ |...|.+|+|+.   ..+.+|+.++.|..+|++..+
T Consensus       242 ~iwD~~~~k~~---------------------------~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  242 QIWDVKEQKKT---------------------------RTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             EEEehhhcccc---------------------------ccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecch
Confidence            99998643222                           22334 999999999994   489999999999999999887


Q ss_pred             eeEe-eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEE--eCCCcE
Q 010748          301 CNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS--LEDGTI  377 (502)
Q Consensus       301 ~~~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--~~dg~v  377 (502)
                      .... +.+|...|+.++|++++ .+|++|+.|+.+.|||............|.+.|.+++|+|....+|++|  +.|++|
T Consensus       292 ~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i  370 (484)
T KOG0305|consen  292 HVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI  370 (484)
T ss_pred             hhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence            6555 88999999999999999 9999999999999999988888888889999999999999998899987  579999


Q ss_pred             EEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      ++||..++         ..+..+. ....|++|.|++....++.+.+ .++.|.||++.+.+  .+..+.+|...|..++
T Consensus       371 ~fwn~~~g---------~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~la  438 (484)
T KOG0305|consen  371 KFWNTNTG---------ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYLA  438 (484)
T ss_pred             EEEEcCCC---------cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEEE
Confidence            99999986         4444443 4567999999998755555543 47789999999876  6888899999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      ++|||.+ +++|+.|.++++|++-...
T Consensus       439 ~SPdg~~-i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  439 LSPDGET-IVTGAADETLRFWNLFDER  464 (484)
T ss_pred             ECCCCCE-EEEecccCcEEeccccCCC
Confidence            9999995 9999999999999997753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.4e-30  Score=256.09  Aligned_cols=288  Identities=16%  Similarity=0.297  Sum_probs=236.8

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ....|..++|||...+|+++-..+   .+++|.|.-...  ..-+-.|+.++.+    +.       |+|.+.++++|+.
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG---~IQlWDYRM~tl--i~rFdeHdGpVRg----v~-------FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSG---VIQLWDYRMGTL--IDRFDEHDGPVRG----VD-------FHPTQPLFVSGGD   71 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCc---eeeeehhhhhhH--HhhhhccCCccce----ee-------ecCCCCeEEecCC
Confidence            456789999999999999998887   778888875542  1334566666533    33       3899999999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      |-.|+||++..                           .+....+.||-+-|..+.|++.. .+++|+|.|.+|+||+..
T Consensus        72 DykIkVWnYk~---------------------------rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwq  123 (1202)
T KOG0292|consen   72 DYKIKVWNYKT---------------------------RRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQ  123 (1202)
T ss_pred             ccEEEEEeccc---------------------------ceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEecc
Confidence            99999999975                           44455677999999999999994 599999999999999999


Q ss_pred             CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-----------------------------ccce
Q 010748          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-----------------------------SGFK  348 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------------------~~~~  348 (502)
                      +++|+..+.+|+..|.|.+|+|.. .+++++|.|.+|++||+..-+.                             ....
T Consensus       124 sr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL  202 (1202)
T KOG0292|consen  124 SRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL  202 (1202)
T ss_pred             CCceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence            999999999999999999999988 8999999999999999863110                             0112


Q ss_pred             EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      .+|...|+-++|+|.-+ ++++|+.|..|++|.+...+.       --+-+..+|...|+++-|+|.. .++++.|.|++
T Consensus       203 EGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDks  273 (1202)
T KOG0292|consen  203 EGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKS  273 (1202)
T ss_pred             cccccccceEEecCCcc-eEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc-ceeEecCCCcc
Confidence            35677899999999877 899999999999999876421       3345567999999999999987 89999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      |+|||+...+  .+.++....+..+.++-+|... ++| ++.|+.+.||.+....
T Consensus       274 irVwDm~kRt--~v~tfrrendRFW~laahP~lN-LfA-AgHDsGm~VFkleREr  324 (1202)
T KOG0292|consen  274 IRVWDMTKRT--SVQTFRRENDRFWILAAHPELN-LFA-AGHDSGMIVFKLERER  324 (1202)
T ss_pred             EEEEeccccc--ceeeeeccCCeEEEEEecCCcc-eee-eecCCceEEEEEcccC
Confidence            9999998877  5667766678899999999998 566 5567777888776443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.7e-31  Score=251.26  Aligned_cols=240  Identities=20%  Similarity=0.337  Sum_probs=215.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|...+++++-..|.|.|||.++...+..                           +.-..-+|.+..|-+- .+++++|
T Consensus        22 HPtePw~la~LynG~V~IWnyetqtmVks---------------------------feV~~~PvRa~kfiaR-knWiv~G   73 (794)
T KOG0276|consen   22 HPTEPWILAALYNGDVQIWNYETQTMVKS---------------------------FEVSEVPVRAAKFIAR-KNWIVTG   73 (794)
T ss_pred             CCCCceEEEeeecCeeEEEecccceeeee---------------------------eeecccchhhheeeec-cceEEEe
Confidence            78899999999999999999987544433                           3335578889999887 7899999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-ccceEeecCCeeEEEeCCCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~  364 (502)
                      +.|..|+||+.+++..++.|..|.+.|.|++.||.. .+++++|.|-+|++||....-. .+.+.+|..-|.+++|+|..
T Consensus        74 sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD  152 (794)
T KOG0276|consen   74 SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD  152 (794)
T ss_pred             cCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC
Confidence            999999999999999999999999999999999999 7899999999999999987643 44456888999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC-CCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      .+.|++++-|++|++|.+.+.         .+.+++.+|...|+|+.|-+-+ .-+|+||+.|.+|+|||..+..  |+.
T Consensus       153 ~ntFaS~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~--CV~  221 (794)
T KOG0276|consen  153 PNTFASASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS--CVQ  221 (794)
T ss_pred             ccceeeeeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH--HHH
Confidence            999999999999999999886         7899999999999999999854 2499999999999999999987  899


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      ++.+|...|..+.|+|.-+ ++++|+.||+++||+..+-+.-.
T Consensus       222 TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  222 TLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             HhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhh
Confidence            9999999999999999999 79999999999999998866543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=6.3e-31  Score=258.48  Aligned_cols=254  Identities=19%  Similarity=0.356  Sum_probs=222.6

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      ++|+|...+++++-..|.|++||..-                           ......|..|.++|..+.|+|. +.++
T Consensus        15 lsFHP~rPwILtslHsG~IQlWDYRM---------------------------~tli~rFdeHdGpVRgv~FH~~-qplF   66 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLHSGVIQLWDYRM---------------------------GTLIDRFDEHDGPVRGVDFHPT-QPLF   66 (1202)
T ss_pred             eecCCCCCEEEEeecCceeeeehhhh---------------------------hhHHhhhhccCCccceeeecCC-CCeE
Confidence            34589999999999999999999863                           3444567789999999999999 5699


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      +||+.|..|+||+..+.+|+.++.+|-+.|..+.||+.- ..++++|.|.+|+||+..+.+++....+|..-|.|.+|+|
T Consensus        67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP  145 (1202)
T ss_pred             EecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence            999999999999999999999999999999999999998 7899999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCC--------------------CccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS--------------------QQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~--------------------~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ... ++++++-|.+|++||+...+.....+.                    ....+.+.+|...|+-++|+|.- -+|++
T Consensus       146 tED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVS  223 (1202)
T KOG0292|consen  146 TED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVS  223 (1202)
T ss_pred             ccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEe
Confidence            644 899999999999999865432111100                    11235567999999999999987 79999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      |+.|..|++|.+...+...+-+..+|.+.|.++-|+|... ++++.|.|++|+|||+.....+.+.
T Consensus       224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceeee
Confidence            9999999999999888777788899999999999999887 7999999999999999988877654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-30  Score=255.57  Aligned_cols=265  Identities=20%  Similarity=0.317  Sum_probs=198.7

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCC--------------------cCcceecC-Ccchh----h--------hhhcc
Q 010748          204 KDREKGNFMAVGSMEPAIEIWDLDVIDE--------------------VQPHVILG-GIDEE----K--------KKKKS  250 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~--------------------~~~~~~l~-~~~~~----~--------~~~~~  250 (502)
                      .||++|+|||+||.|+.|+||.+-..+.                    ..|...-. .....    .        .....
T Consensus       274 KFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~  353 (712)
T KOG0283|consen  274 KFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLK  353 (712)
T ss_pred             EeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCc
Confidence            3499999999999999999999854110                    00000000 00000    0        00000


Q ss_pred             ccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC
Q 010748          251 KKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF  330 (502)
Q Consensus       251 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~  330 (502)
                      ...-..++...+.||.+.|+.|+|+.+  ++|+|+|.|.||+||++....|++.|. |.+.|+|++|+|.+.++|++|+.
T Consensus       354 ~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSL  430 (712)
T KOG0283|consen  354 AFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSL  430 (712)
T ss_pred             cccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccc
Confidence            001123445567899999999999987  489999999999999999999999997 99999999999999899999999


Q ss_pred             CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc------C
Q 010748          331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------D  404 (502)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h------~  404 (502)
                      ||.|+||++...+... -.....-|++++|.|+|. ..++|+-+|.+++|+....+.       ..-..+..|      .
T Consensus       431 D~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~-------~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  431 DGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKL-------VSDFHIRLHNKKKKQG  501 (712)
T ss_pred             ccceEEeecCcCeeEe-ehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeE-------EEeeeEeeccCccccC
Confidence            9999999998766543 224557799999999976 899999999999999987632       111122222      2


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +.|+++.|.|..+..+++.+.|..|||||.++..+.+.+.-......-....|+.||.| |++++.|..|+||++..
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCC
Confidence            37999999998777788889999999999988775444443333445567899999997 78888999999999844

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.8e-29  Score=249.55  Aligned_cols=255  Identities=18%  Similarity=0.206  Sum_probs=193.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++++..+++++.+.....|+...+..+.+....|              +.......+.+|.+.|++++|+|..+++|++|
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G--------------~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg   94 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG--------------KLASNPPILLGQEGPIIDVAFNPFDPQKLFTA   94 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccccc--------------cCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence            4566666777777777788765433222211111              11111234668999999999999436799999


Q ss_pred             ecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748          286 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       286 s~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      +.|++|++||+.++       .++..+.+|...|.+++|+|.+.++|++|+.|++|++||++++........|...|.++
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl  174 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL  174 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence            99999999999765       35678899999999999999876799999999999999999887666555688899999


Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC-eeEEEEcCCCCCEEEEEe----CCCcEEEEE
Q 010748          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISYNPLVPNLLATGS----TDKMVKLWD  433 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~l~t~s----~dg~i~vwd  433 (502)
                      +|+|++. ++++++.||.|++||++++         ..+..+.+|.+. +..+.|.+.+ .++++++    .|+.|++||
T Consensus       175 a~spdG~-lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWD  243 (493)
T PTZ00421        175 EWNLDGS-LLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWD  243 (493)
T ss_pred             EEECCCC-EEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEe
Confidence            9999865 8999999999999999986         667788888765 4567888877 5555544    478999999


Q ss_pred             CCCCCeeEEEEec-CCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCccccc
Q 010748          434 LSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       434 ~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~ll~sg~-~dg~i~vwd~~~~~~~~~  487 (502)
                      +++... .+.... .+...+....|++++.+ |++|+ .|+.|++||+.++..+..
T Consensus       244 lr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        244 TRKMAS-PYSTVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             CCCCCC-ceeEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeCCceEEE
Confidence            987642 222222 23345667789999985 65555 699999999998886654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.8e-29  Score=268.07  Aligned_cols=252  Identities=20%  Similarity=0.322  Sum_probs=204.7

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|+|++||+|+.|+.|+||++........                   ........+ .+...|.+++
T Consensus       487 ~~i~f-------s~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------~~~~~~~~~-~~~~~v~~l~  539 (793)
T PLN00181        487 CAIGF-------DRDGEFFATAGVNKKIKIFECESIIKDGR-------------------DIHYPVVEL-ASRSKLSGIC  539 (793)
T ss_pred             EEEEE-------CCCCCEEEEEeCCCEEEEEECCccccccc-------------------ccccceEEe-cccCceeeEE
Confidence            56666       79999999999999999999863210000                   000011112 2346899999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      |++..+.+|++|+.||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.||+|++||+++...... .....
T Consensus       540 ~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-~~~~~  618 (793)
T PLN00181        540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-IKTKA  618 (793)
T ss_pred             eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE-EecCC
Confidence            99876779999999999999999999999999999999999999985448999999999999999998766543 33456


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+.++.|++..+.++++|+.||.|++||+++.        ..++..+.+|...|+++.|.+ + .+|++++.|++|++||
T Consensus       619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~--------~~~~~~~~~h~~~V~~v~f~~-~-~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNP--------KLPLCTMIGHSKTVSYVRFVD-S-STLVSSSTDNTLKLWD  688 (793)
T ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--------CccceEecCCCCCEEEEEEeC-C-CEEEEEECCCEEEEEe
Confidence            89999997665668999999999999999876        245677889999999999974 4 7899999999999999


Q ss_pred             CCCCC----eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          434 LSNNQ----PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       434 ~~~~~----~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      ++...    ..++..+.+|...+.+++|+|++. +|++|+.||.|++|+......
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~  742 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMP  742 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCc
Confidence            97531    235677889999999999999998 599999999999999876543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.6e-29  Score=232.74  Aligned_cols=267  Identities=21%  Similarity=0.375  Sum_probs=214.5

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC---------CeeeeeccccCCCcceeeeecCCCCCCC
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP---------NLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~~~~~~~~~~s~  207 (502)
                      .|+++|+.+.+.|+...|+++.+.+  +.+.||.|........         .|.+|+.   .+  +.+.|..      .
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~--~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~---eg--~glsWn~------~  188 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSS--GDVYVFDYTKHPSKPKASGECRPDLRLKGHEK---EG--YGLSWNR------Q  188 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCC--CCEEEEEeccCCCcccccccCCCceEEEeecc---cc--ccccccc------c
Confidence            3889999999999999888876655  2456666654443221         3456665   12  3466731      2


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ..-+|++|+.|+.|++||+......                    .+.......+.+|...|..++|++....+|++++.
T Consensus       189 ~~g~Lls~~~d~~i~lwdi~~~~~~--------------------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d  248 (422)
T KOG0264|consen  189 QEGTLLSGSDDHTICLWDINAESKE--------------------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD  248 (422)
T ss_pred             cceeEeeccCCCcEEEEeccccccC--------------------CccccceEEeecCCcceehhhccccchhhheeecC
Confidence            4668999999999999999754321                    12244556778999999999999998999999999


Q ss_pred             CCcEEEEeCC--CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc-cceEeecCCeeEEEeCCCC
Q 010748          288 DKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       288 dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~  364 (502)
                      |+.+.|||++  +.++.+...+|++.|.|++|+|.+..+|||||.|++|++||+|..... ..+..|...|.+|.|+|+.
T Consensus       249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence            9999999999  567778889999999999999999899999999999999999986654 3455789999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCC-----CCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      ..++++++.|+.+.+||+.......     ......+++.-.+|...|+.+.|+|+.+..|++.+.|+.+.||.+..
T Consensus       329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9999999999999999997653321     11223556788899999999999999999999999999999999864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.7e-30  Score=216.62  Aligned_cols=235  Identities=23%  Similarity=0.392  Sum_probs=198.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +-+|+|.++++.|.+|++|+.-.                           ......+.+|...|..++.+.+ ...|++|
T Consensus        26 N~dGnY~ltcGsdrtvrLWNp~r---------------------------g~liktYsghG~EVlD~~~s~D-nskf~s~   77 (307)
T KOG0316|consen   26 NVDGNYCLTCGSDRTVRLWNPLR---------------------------GALIKTYSGHGHEVLDAALSSD-NSKFASC   77 (307)
T ss_pred             ccCCCEEEEcCCCceEEeecccc---------------------------cceeeeecCCCceeeecccccc-ccccccC
Confidence            67899999999999999999854                           3344466799999999999998 5689999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC--ccceEeecCCeeEEEeCCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~  363 (502)
                      +.|..|.+||+.+|+.++.|.+|.+.|+.++|+... ..+++|+.|.++++||.|+...  ++.+-.....|.++..+. 
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-  155 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-  155 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-
Confidence            999999999999999999999999999999999988 8999999999999999997654  444445677899998875 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                        ..+++|+.||+++.||+|.+.         .  ...-...+|++++|++++ ++.++++.|+++++.|-.+++  .+.
T Consensus       156 --heIvaGS~DGtvRtydiR~G~---------l--~sDy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk--lL~  219 (307)
T KOG0316|consen  156 --HEIVAGSVDGTVRTYDIRKGT---------L--SSDYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK--LLK  219 (307)
T ss_pred             --cEEEeeccCCcEEEEEeecce---------e--ehhhcCCcceeEEecCCC-CEEEEeeccceeeecccchhH--HHH
Confidence              379999999999999999872         1  122245689999999998 999999999999999999998  566


Q ss_pred             EecCCCCcEE--EEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          444 SRNPKAGAVF--SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       444 ~~~~~~~~v~--~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .+.+|...=+  .++++.... .+++|+.||.|++||+.....+..
T Consensus       220 sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk  264 (307)
T KOG0316|consen  220 SYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISK  264 (307)
T ss_pred             Hhcccccceeeeeeeecccce-eEEeccCCceEEEEEeccceeeee
Confidence            6777765443  445666556 489999999999999988776654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.2e-28  Score=205.23  Aligned_cols=292  Identities=21%  Similarity=0.309  Sum_probs=229.7

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---------CCCCee----eeeccccCCCcceeeeecCCCC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---------GDPNLY----VHHHIIIPAFPLCMAWLDCPLK  204 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---------~~~~l~----~~~~~~~~~~~~~~~~~~~~~~  204 (502)
                      +...|.++.|+|.|.+.++|++..   +++|.-|..-..         ..+.+.    .||..    -.+|++|      
T Consensus        31 dsqairav~fhp~g~lyavgsnsk---t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkg----siyc~~w------   97 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSK---TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKG----SIYCTAW------   97 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCc---eEEEEccccccCcccccccccCCCeEEeeeccccCc----cEEEEEe------
Confidence            456899999999999999999886   678877754332         111222    24433    3489999      


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC---CCcE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNI  281 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~~  281 (502)
                       ||.|.+||+|+.|.+|++.-++...+..                      ......+.-|.+.|..++|..+   ++.+
T Consensus        98 -s~~geliatgsndk~ik~l~fn~dt~~~----------------------~g~dle~nmhdgtirdl~fld~~~s~~~i  154 (350)
T KOG0641|consen   98 -SPCGELIATGSNDKTIKVLPFNADTCNA----------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAI  154 (350)
T ss_pred             -cCccCeEEecCCCceEEEEecccccccc----------------------cCcceeeeecCCceeeeEEecCCCcCceE
Confidence             7899999999999999998765322211                      1122345579999999999643   4557


Q ss_pred             EEEEec-CCcEEEEeCCCCeeeEeeccCCCCeEEE-EEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe-------ec
Q 010748          282 LASASA-DKQVKIWDVAAGKCNLTLEHHTDKVQAV-AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------VA  352 (502)
Q Consensus       282 l~sgs~-dg~v~vwd~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~  352 (502)
                      |++++. |..|++-|..+|+..+.+.+|++.|.++ .|+  + -.+++|+.|.+|++||+|-+.++...-.       ..
T Consensus       155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles  231 (350)
T KOG0641|consen  155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES  231 (350)
T ss_pred             EEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence            888765 6678888999999999999999999887 343  4 7899999999999999998776543221       13


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      +.|.+++..|.|. ++++|..|....+||+|.+         .+++.+..|+..|.|+.|+|.. .+|+||+.|..|++-
T Consensus       232 savaav~vdpsgr-ll~sg~~dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a-~yllt~syd~~iklt  300 (350)
T KOG0641|consen  232 SAVAAVAVDPSGR-LLASGHADSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLT  300 (350)
T ss_pred             ceeEEEEECCCcc-eeeeccCCCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEe
Confidence            5689999999875 8999999999999999987         8899999999999999999976 999999999999999


Q ss_pred             ECCCCC--eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          433 DLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       433 d~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      |+...-  ...+.....|...+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus       301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN  349 (350)
T ss_pred             ecccchhhcCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence            987531  234555567888899999999875 48888999999999763

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.1e-28  Score=230.25  Aligned_cols=314  Identities=15%  Similarity=0.219  Sum_probs=250.4

Q ss_pred             ccCCCCCCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecC
Q 010748          122 YASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC  201 (502)
Q Consensus       122 ~~~~~~d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  201 (502)
                      |..+-++|.....-.+|...++-..|+|.|-++|+|-..+   .++||.....+    .+..+.-.++.+....++|   
T Consensus        42 ~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG---~vRIWdtt~~~----hiLKnef~v~aG~I~Di~W---  111 (603)
T KOG0318|consen   42 IIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSG---KVRIWDTTQKE----HILKNEFQVLAGPIKDISW---  111 (603)
T ss_pred             EEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcC---cEEEEeccCcc----eeeeeeeeeccccccccee---
Confidence            3334444544444467999999999999999999998877   45666665443    5555555666666677778   


Q ss_pred             CCCCCCCCCEEEEecCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC
Q 010748          202 PLKDREKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE  277 (502)
Q Consensus       202 ~~~~s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~  277 (502)
                          +.++++|++.+..    |.+.+||-  +..+.                           .+.+|...|++++|-|.
T Consensus       112 ----d~ds~RI~avGEGrerfg~~F~~DS--G~SvG---------------------------ei~GhSr~ins~~~Kps  158 (603)
T KOG0318|consen  112 ----DFDSKRIAAVGEGRERFGHVFLWDS--GNSVG---------------------------EITGHSRRINSVDFKPS  158 (603)
T ss_pred             ----CCCCcEEEEEecCccceeEEEEecC--CCccc---------------------------eeeccceeEeeeeccCC
Confidence                7888887776543    45566664  33222                           34589999999999999


Q ss_pred             CCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE---eecCC
Q 010748          278 FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAAD  354 (502)
Q Consensus       278 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~  354 (502)
                      .+..+++|+.|++|.+|.-.--+...+++.|+..|+|+.|+|+| .+|++++.||++.+||-.++.....+.   .|.+.
T Consensus       159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGs  237 (603)
T KOG0318|consen  159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGS  237 (603)
T ss_pred             CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCcccc
Confidence            78899999999999999977778888899999999999999999 899999999999999999998876655   78999


Q ss_pred             eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCC----------------------------------CCCCCCccceEE
Q 010748          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD----------------------------------PDSTSQQSSFTL  400 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~----------------------------------~~~~~~~~~~~~  400 (502)
                      |.+++|+|++. .|++++.|.++++||+.+....                                  .+.....++..+
T Consensus       238 IfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i  316 (603)
T KOG0318|consen  238 IFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI  316 (603)
T ss_pred             EEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee
Confidence            99999999876 7999999999999999876430                                  011112466778


Q ss_pred             eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       401 ~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      .+|...|+++..+|++ .+|++|+.||.|.-|+..++.. ....-.+|...|.+++.+..+.  |.+.|.|.++++.++.
T Consensus       317 ~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~-~~~~g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~~  392 (603)
T KOG0318|consen  317 SGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTS-DRLAGKGHTNQIKGMAASESGE--LFTIGWDDTLRVISLK  392 (603)
T ss_pred             cccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccc-cccccccccceEEEEeecCCCc--EEEEecCCeEEEEecc
Confidence            8999999999999998 9999999999999999998863 2233367889999999988775  6778999999999886


Q ss_pred             CCcc
Q 010748          481 SDAG  484 (502)
Q Consensus       481 ~~~~  484 (502)
                      .+..
T Consensus       393 ~~~~  396 (603)
T KOG0318|consen  393 DNGY  396 (603)
T ss_pred             cCcc
Confidence            5443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.4e-29  Score=213.67  Aligned_cols=234  Identities=25%  Similarity=0.417  Sum_probs=197.5

Q ss_pred             CCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|. |..||+|+.|..|+||++..++...-..+                       .-.+|+..|++++|+|.+ ++||+
T Consensus        23 hp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v-----------------------ld~~hkrsVRsvAwsp~g-~~La~   78 (312)
T KOG0645|consen   23 HPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV-----------------------LDDGHKRSVRSVAWSPHG-RYLAS   78 (312)
T ss_pred             ccCCceEEEeecCCceEEEEecCCCCcEEEEEe-----------------------ccccchheeeeeeecCCC-cEEEE
Confidence            566 88999999999999999875443332222                       223799999999999995 59999


Q ss_pred             EecCCcEEEEeCCCC--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC---CccceEeecCCeeEEE
Q 010748          285 ASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVESLA  359 (502)
Q Consensus       285 gs~dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~  359 (502)
                      ||.|.++.||.-..+  +++.++.+|...|.|++|+++| ++|++++.|+.|-||.+....   +...+..|...|..+.
T Consensus        79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~  157 (312)
T KOG0645|consen   79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI  157 (312)
T ss_pred             eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence            999999999986544  7899999999999999999999 999999999999999988543   4556678999999999


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      |+|.. .+|++++-|.+|++|.-.....      ..++.++.+|...|.+++|+|.| ..|++++.|++|+||-+...- 
T Consensus       158 WHPt~-dlL~S~SYDnTIk~~~~~~ddd------W~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~-  228 (312)
T KOG0645|consen  158 WHPTE-DLLFSCSYDNTIKVYRDEDDDD------WECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL-  228 (312)
T ss_pred             EcCCc-ceeEEeccCCeEEEEeecCCCC------eeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc-
Confidence            99964 4899999999999998763211      57899999999999999999998 899999999999999865321 


Q ss_pred             eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                           ...|...++.+.|. ++  +||+++.|+.|+||.-..
T Consensus       229 -----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  229 -----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD  262 (312)
T ss_pred             -----chhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence                 23467889999999 55  699999999999998764

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.9e-28  Score=245.59  Aligned_cols=229  Identities=22%  Similarity=0.302  Sum_probs=180.3

Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      |+..+.|++|++...                           .....+.+|...|++++|+|..+++||||+.||+|+||
T Consensus        50 GG~~gvI~L~~~~r~---------------------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIW  102 (568)
T PTZ00420         50 GGLIGAIRLENQMRK---------------------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVW  102 (568)
T ss_pred             CCceeEEEeeecCCC---------------------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Confidence            566788888887531                           22335568999999999999766799999999999999


Q ss_pred             eCCCCe--------eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          295 DVAAGK--------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       295 d~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      |+.++.        ++..+.+|...|.+++|+|.+..+|++++.|++|++||++++.... ...+...|.+++|+|++. 
T Consensus       103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~~~~~V~SlswspdG~-  180 (568)
T PTZ00420        103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QINMPKKLSSLKWNIKGN-  180 (568)
T ss_pred             ECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEecCCcEEEEEECCCCC-
Confidence            997642        3456788999999999999985667899999999999999877543 334667899999999876 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE-----EEcCCCCCEEEEEeCCC----cEEEEECCC-
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-----SYNPLVPNLLATGSTDK----MVKLWDLSN-  436 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-----~~sp~~~~~l~t~s~dg----~i~vwd~~~-  436 (502)
                      +|++++.|+.|++||++++         ..+..+.+|.+.+.+.     .|++++ .+|++++.++    .|+|||++. 
T Consensus       181 lLat~s~D~~IrIwD~Rsg---------~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        181 LLSGTCVGKHMHIIDPRKQ---------EIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             EEEEEecCCEEEEEECCCC---------cEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC
Confidence            7888899999999999987         6677888998765433     345776 7888877764    799999995 


Q ss_pred             CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .++.....+..+.+.+......+++. ++++|+.|+.|++|++..+.
T Consensus       251 ~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        251 TSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCc
Confidence            45544555555556555555555666 68899999999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.8e-29  Score=232.31  Aligned_cols=291  Identities=23%  Similarity=0.317  Sum_probs=221.9

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCC--eeeeecccc-------CCCcceeeeecCCCC
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPN--LYVHHHIII-------PAFPLCMAWLDCPLK  204 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~--l~~~~~~~~-------~~~~~~~~~~~~~~~  204 (502)
                      .|.-.+.++.++|++.+++.++.++   +|.-|....+...   .+.  +...|-.++       ..-.+|++.      
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g---~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av------  210 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDG---TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV------  210 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCc---ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE------
Confidence            4778899999999999999999887   3333333332210   000  000010000       011244443      


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                       |++|+|||+|+.|..|.||+.++.+.+                           ..+.+|.+.|.+++|-.. .+.|++
T Consensus       211 -S~Dgkylatgg~d~~v~Iw~~~t~ehv---------------------------~~~~ghr~~V~~L~fr~g-t~~lys  261 (479)
T KOG0299|consen  211 -SSDGKYLATGGRDRHVQIWDCDTLEHV---------------------------KVFKGHRGAVSSLAFRKG-TSELYS  261 (479)
T ss_pred             -cCCCcEEEecCCCceEEEecCcccchh---------------------------hcccccccceeeeeeecC-ccceee
Confidence             899999999999999999999875433                           346699999999999876 779999


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  364 (502)
                      +|.|++|++|++.....+.++.+|.+.|.+|.-...+ +.+.+|+.|+++++|++.... ...+.++.+.+.|++|-.+ 
T Consensus       262 ~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~-  338 (479)
T KOG0299|consen  262 ASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND-  338 (479)
T ss_pred             eecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-
Confidence            9999999999999999999999999999999988887 777777899999999994433 3345677889999999874 


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-c-----------cCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-A-----------HDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~-----------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                       ..|++|+.+|.|.+|++.+.         +++++.. +           +...|++++..|.. .++++|+.+|.|++|
T Consensus       339 -~HfvsGSdnG~IaLWs~~KK---------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW  407 (479)
T KOG0299|consen  339 -EHFVSGSDNGSIALWSLLKK---------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLW  407 (479)
T ss_pred             -cceeeccCCceEEEeeeccc---------CceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEE
Confidence             36999999999999999887         3343332 2           22489999999976 999999999999999


Q ss_pred             ECCCC--CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          433 DLSNN--QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       433 d~~~~--~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      -+..+  +..++..+. -.+.|++++|+++|.++++..|....+--|-..
T Consensus       408 ~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  408 KIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             EecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence            99887  223344444 568899999999999878877777666666543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3e-29  Score=243.13  Aligned_cols=286  Identities=18%  Similarity=0.310  Sum_probs=241.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|..+|..++++.+..++++|..+    +++||..+....    +..    +...+.+|..+       -|.++++++|
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga~~----SikiWn~~t~kc----iRT----i~~~y~l~~~F-------vpgd~~Iv~G  430 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGAGE----SIKIWNRDTLKC----IRT----ITCGYILASKF-------VPGDRYIVLG  430 (888)
T ss_pred             ccchhheeEEEeecCceeeeecCCC----cEEEEEccCcce----eEE----eccccEEEEEe-------cCCCceEEEe
Confidence            5688999999999999999988766    578888775543    211    11224466655       4789999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +..|.+.|||+.+...+..                           ...|.++|++++.+|+ +..+++||+|.+|++||
T Consensus       431 ~k~Gel~vfdlaS~~l~Et---------------------------i~AHdgaIWsi~~~pD-~~g~vT~saDktVkfWd  482 (888)
T KOG0306|consen  431 TKNGELQVFDLASASLVET---------------------------IRAHDGAIWSISLSPD-NKGFVTGSADKTVKFWD  482 (888)
T ss_pred             ccCCceEEEEeehhhhhhh---------------------------hhccccceeeeeecCC-CCceEEecCCcEEEEEe
Confidence            9999999999987554432                           3379999999999999 55899999999999999


Q ss_pred             CCC-----C--eee------EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          296 VAA-----G--KCN------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       296 ~~~-----~--~~~------~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      ..-     +  +.+      +++. -...|.|+.++|++ .+|+++-.|.+|++|-+.+-+....+.+|.-+|.|+..+|
T Consensus       483 f~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~  560 (888)
T KOG0306|consen  483 FKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP  560 (888)
T ss_pred             EEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence            741     1  111      1222 35789999999999 9999999999999999999888888899999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      ++. ++++|+.|.+|++|-+.-+         .+..++.+|...|.++.|.|.. .++.|+|.|+.|+-||-....  ++
T Consensus       561 DSk-livTgSADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe--~i  627 (888)
T KOG0306|consen  561 DSK-LIVTGSADKNVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE--EI  627 (888)
T ss_pred             CcC-eEEeccCCCceEEeccccc---------hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh--hh
Confidence            865 8999999999999999876         7888999999999999999976 999999999999999988776  78


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      ..+.+|...|+|++.+|+|.| +++++.|.+|++|.......
T Consensus       628 q~L~~H~~ev~cLav~~~G~~-vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  628 QKLDGHHSEVWCLAVSPNGSF-VVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             eeeccchheeeeeEEcCCCCe-EEeccCCceeEeeeccCcce
Confidence            899999999999999999996 88999999999999765433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=3.4e-30  Score=238.34  Aligned_cols=253  Identities=18%  Similarity=0.272  Sum_probs=208.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .++.|+      ...+.+|++|++|+.|+||++..                          .......+.+|..+|.+++
T Consensus       218 sai~~f------p~~~hLlLS~gmD~~vklW~vy~--------------------------~~~~lrtf~gH~k~Vrd~~  265 (503)
T KOG0282|consen  218 SAIQWF------PKKGHLLLSGGMDGLVKLWNVYD--------------------------DRRCLRTFKGHRKPVRDAS  265 (503)
T ss_pred             chhhhc------cceeeEEEecCCCceEEEEEEec--------------------------Ccceehhhhcchhhhhhhh
Confidence            566664      22799999999999999999864                          1344456779999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      |+++ +..++|+|.|+.|++||+++|+++..|. ....++|+.|+|++.+.|++|+.|+.|+.||+|+++.+...-.|-+
T Consensus       266 ~s~~-g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg  343 (503)
T KOG0282|consen  266 FNNC-GTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG  343 (503)
T ss_pred             cccc-CCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence            9999 5588899999999999999999999986 3567899999999999999999999999999999998887788899


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .|..+.|-+.+. .|+++++++++++|+.+.+-        ........+.....++..+|++ .++++=+.|+.|.+|.
T Consensus       344 ~i~~i~F~~~g~-rFissSDdks~riWe~~~~v--------~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  344 AILDITFVDEGR-RFISSSDDKSVRIWENRIPV--------PIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFS  413 (503)
T ss_pred             heeeeEEccCCc-eEeeeccCccEEEEEcCCCc--------cchhhcchhhccCcceecCCCC-CeehhhccCceEEEEe
Confidence            999999999876 79999999999999999762        2222222334456788889998 8999999999999998


Q ss_pred             CCCCCe-eEEEEecCC--CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          434 LSNNQP-SCIASRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       434 ~~~~~~-~~~~~~~~~--~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +...-. .....+.+|  .|.-..+.|||||++ |++|..+|.+.+||.++.+.+...-.+
T Consensus       414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             cccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccC
Confidence            754321 122334455  455678999999995 999999999999999998888766655

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=223.16  Aligned_cols=255  Identities=19%  Similarity=0.303  Sum_probs=212.0

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |||+|+||++|+.||.|.|||+.++.....                   -+......+.-|..+|.|+.|+.+ ..+||+
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKD-------------------LkYQAqd~fMMmd~aVlci~FSRD-sEMlAs  280 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKD-------------------LKYQAQDNFMMMDDAVLCISFSRD-SEMLAS  280 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhhh-------------------hhhhhhcceeecccceEEEeeccc-HHHhhc
Confidence            499999999999999999999976532111                   112223345568899999999999 679999


Q ss_pred             EecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  363 (502)
                      |+.||.|++|.+.+|.|++.|. .|+..|+|+.|+.++ ..+++++.|.++++.-+.++++...+.+|.+-|+.+.|.++
T Consensus       281 GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  281 GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence            9999999999999999999995 899999999999999 78999999999999999999999888999999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe--ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      |. .+++++.||+|++|+..+.         .++.++.  +...+|.++..-|.++..++.|...++|.|.++...-...
T Consensus       360 G~-~iisaSsDgtvkvW~~Ktt---------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs  429 (508)
T KOG0275|consen  360 GH-HIISASSDGTVKVWHGKTT---------ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS  429 (508)
T ss_pred             CC-eEEEecCCccEEEecCcch---------hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence            76 7999999999999999987         4444443  4567899999999888999999999999999987543222


Q ss_pred             EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ...-....+...+++.+|.|.| +.+.+.|+.++.|.+.+|..-+.+.-+
T Consensus       430 fsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~Vh  478 (508)
T KOG0275|consen  430 FSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVH  478 (508)
T ss_pred             eccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeecc
Confidence            2222233566778899999996 778899999999999999876554433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=5.9e-28  Score=227.95  Aligned_cols=246  Identities=32%  Similarity=0.516  Sum_probs=207.8

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|+.|       +|++++|++|+.+|.|++|++....                           ....+..|...+.++.
T Consensus        13 ~~~~~-------~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------~~~~~~~~~~~i~~~~   58 (289)
T cd00200          13 TCVAF-------SPDGKLLATGSGDGTIKVWDLETGE---------------------------LLRTLKGHTGPVRDVA   58 (289)
T ss_pred             EEEEE-------cCCCCEEEEeecCcEEEEEEeeCCC---------------------------cEEEEecCCcceeEEE
Confidence            67777       7889999999999999999997532                           1223446888899999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      |+|+ +.+|++++.+|.|++|++.+++.+..+..|...+.++.|++++ .++++++.++.|.+|++++.+.......+..
T Consensus        59 ~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  136 (289)
T cd00200          59 ASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTD  136 (289)
T ss_pred             ECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCC
Confidence            9999 4689999999999999999988888898999999999999996 7888888899999999997666554556778


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+.+++|+|++ .++++++.+|.|++||++..         .....+..|...+.++.|+|++ ..+++++.++.|++||
T Consensus       137 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d  205 (289)
T cd00200         137 WVNSVAFSPDG-TFVASSSQDGTIKLWDLRTG---------KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWD  205 (289)
T ss_pred             cEEEEEEcCcC-CEEEEEcCCCcEEEEEcccc---------ccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEE
Confidence            89999999974 46777777999999999875         5677777899999999999987 7888888899999999


Q ss_pred             CCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ++.++  .+..+..|...+.++.|+|++. ++++++.+|.|++|++.++..+....
T Consensus       206 ~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         206 LSTGK--CLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             CCCCc--eecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEcc
Confidence            99876  4555557788999999999976 57777779999999999877766554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=229.77  Aligned_cols=303  Identities=17%  Similarity=0.229  Sum_probs=224.4

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++.+.|.|-.+++|+.+.   .++.|.|.....   .+. +...+.|.-...+.-    +.||+.|..|++.
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy---~v~~wDf~gMda---s~~-~fr~l~P~E~h~i~s----l~ys~Tg~~iLvv  232 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDY---TVKFWDFQGMDA---SMR-SFRQLQPCETHQINS----LQYSVTGDQILVV  232 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccc---eEEEEecccccc---cch-hhhccCcccccccce----eeecCCCCeEEEE
Confidence            34678899999999999999999886   668888876553   221 122222222222222    2237889988888


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +....++|+|-+....++..               +......-....+||...++|.+|+|.....+++++.||++++||
T Consensus       233 sg~aqakl~DRdG~~~~e~~---------------KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd  297 (641)
T KOG0772|consen  233 SGSAQAKLLDRDGFEIVEFS---------------KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD  297 (641)
T ss_pred             ecCcceeEEccCCceeeeee---------------ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence            88899999997754332210               111122334456799999999999999889999999999999999


Q ss_pred             CCCCee-eEee-----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc---ceEeecC--CeeEEEeCCCC
Q 010748          296 VAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAA--DVESLAWDPHA  364 (502)
Q Consensus       296 ~~~~~~-~~~~-----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~--~v~~v~~~~~~  364 (502)
                      +...+. +..|     .+..-++++++|++++ .+|++|+.||.|.+|+.+......   ....|..  .|+|+.|+++|
T Consensus       298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             cCCchhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence            986542 2223     2334578999999999 789999999999999986543322   2234554  89999999987


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc--CCCeeEEEEcCCCCCEEEEEeC------CCcEEEEECCC
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGST------DKMVKLWDLSN  436 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~------dg~i~vwd~~~  436 (502)
                      . +|++-+.|+++++||+|..+        +++....+-  ..+-+.++|||+. .+|+||+.      .|.+.+||..+
T Consensus       377 ~-~LlSRg~D~tLKvWDLrq~k--------kpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  377 N-YLLSRGFDDTLKVWDLRQFK--------KPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             c-hhhhccCCCceeeeeccccc--------cchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccc
Confidence            6 79999999999999999883        555555433  3456788999997 89999865      46799999988


Q ss_pred             CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      ..  .++.+.-....|..+.|+|.-.. |.+|+.||+++||=
T Consensus       447 ~d--~v~ki~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  447 LD--TVYKIDISTASVVRCLWHPKLNQ-IFAGSGDGTAHVYY  485 (641)
T ss_pred             ee--eEEEecCCCceEEEEeecchhhh-eeeecCCCceEEEE
Confidence            77  56666666788999999999886 55678889998873

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-28  Score=211.19  Aligned_cols=235  Identities=22%  Similarity=0.298  Sum_probs=196.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +.+|.+|.+++.|.++.||-...++.                           .-.+.+|+++|+|+....+ ...|++|
T Consensus        19 N~eGDLlFscaKD~~~~vw~s~nGer---------------------------lGty~GHtGavW~~Did~~-s~~liTG   70 (327)
T KOG0643|consen   19 NREGDLLFSCAKDSTPTVWYSLNGER---------------------------LGTYDGHTGAVWCCDIDWD-SKHLITG   70 (327)
T ss_pred             cCCCcEEEEecCCCCceEEEecCCce---------------------------eeeecCCCceEEEEEecCC-cceeeec
Confidence            68999999999999999997654332                           2245699999999999988 6699999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-----CCCcEEEEecCCC-------CCccceEeecC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDRSVVMKDARIS-------THSGFKWAVAA  353 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-----~dg~i~iwd~~~~-------~~~~~~~~~~~  353 (502)
                      ++|.+++|||+.+|+++.+++ ...+|..+.|++.+ ++++.+.     ..+.|.++|++..       .+......+.+
T Consensus        71 SAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s  148 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS  148 (327)
T ss_pred             cccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence            999999999999999999997 57889999999999 6555554     3468999999843       33333445678


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .++.+.|.|-+. ++++|.++|.|.+||++++        ...+.+...|...|+.++++|+. .+++|++.|.+-++||
T Consensus       149 kit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  149 KITSALWGPLGE-TIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVD  218 (327)
T ss_pred             ceeeeeecccCC-EEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCc-ceEEecccCccceeee
Confidence            899999999866 8999999999999999998        46777778899999999999998 9999999999999999


Q ss_pred             CCCCCee-----------------------------------------------------EEEEecCCCCcEEEEEEcCC
Q 010748          434 LSNNQPS-----------------------------------------------------CIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       434 ~~~~~~~-----------------------------------------------------~~~~~~~~~~~v~~~~~spd  460 (502)
                      +.+....                                                     .+-...+|-++|++++|+|+
T Consensus       219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd  298 (327)
T KOG0643|consen  219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD  298 (327)
T ss_pred             ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence            8763210                                                     12233568899999999999


Q ss_pred             CCcEEEEEeCCCcEEEEECCC
Q 010748          461 SPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       461 ~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      |. ..++||.||.|++.-+..
T Consensus       299 Gk-sYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  299 GK-SYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             Cc-ccccCCCCceEEEEEecc
Confidence            99 599999999999986644

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.7e-28  Score=209.07  Aligned_cols=249  Identities=23%  Similarity=0.447  Sum_probs=213.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      ..++|       +-+|..||+|+.|+++.||+++...                         ........+|.+.|-.++
T Consensus        24 ~Sv~w-------n~~g~~lasgs~dktv~v~n~e~~r-------------------------~~~~~~~~gh~~svdql~   71 (313)
T KOG1407|consen   24 HSVAW-------NCDGTKLASGSFDKTVSVWNLERDR-------------------------FRKELVYRGHTDSVDQLC   71 (313)
T ss_pred             eEEEE-------cccCceeeecccCCceEEEEecchh-------------------------hhhhhcccCCCcchhhhe
Confidence            45667       5789999999999999999997531                         223335568999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      |+|....+|++++.|.+|++||+++++++..+....+.+ -+.|+|+| .++++++.|..|.+.|.|+.+... ......
T Consensus        72 w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~-~~~~~~  148 (313)
T KOG1407|consen   72 WDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVN-EEQFKF  148 (313)
T ss_pred             eCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceee-hhcccc
Confidence            999989999999999999999999999999887544444 57899999 899999999999999999877554 445566


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+.-++|+.. ..+|+..+..|+|.|......         +++.++.+|.....||.|+|.| +++|+|+.|..+.+||
T Consensus       149 e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD  217 (313)
T KOG1407|consen  149 EVNEISWNNS-NDLFFLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWD  217 (313)
T ss_pred             eeeeeeecCC-CCEEEEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCC-ceEeeccccceeeccC
Confidence            7888899854 457777777899999988865         8999999999999999999998 9999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +...  .|+..+..+.-+|+.+.|+.+|+ +||+|+.|..|-|=++.+|..+..+...
T Consensus       218 ~~EL--iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  218 VDEL--ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             hhHh--hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEeecc
Confidence            9765  48888888999999999999999 5999999999999999998887665443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.7e-28  Score=243.73  Aligned_cols=288  Identities=26%  Similarity=0.381  Sum_probs=235.2

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+.+.+|+  +..+++++.+.   .|.+|...........+..|.. .+    .+++.       ...+++|++|+.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~---tl~~~~~~~~~~i~~~l~GH~g-~V----~~l~~-------~~~~~~lvsgS~  269 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDS---TLHLWDLNNGYLILTRLVGHFG-GV----WGLAF-------PSGGDKLVSGST  269 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCc---eeEEeecccceEEEeeccCCCC-Cc----eeEEE-------ecCCCEEEEEec
Confidence            45678888888  77787887665   5555554443321112333332 22    34444       235899999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      |.+++|||+.++.+..                           .+.+|...|.++...+.   ++++||.|.+|++|++.
T Consensus       270 D~t~rvWd~~sg~C~~---------------------------~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  270 DKTERVWDCSTGECTH---------------------------SLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             CCcEEeEecCCCcEEE---------------------------EecCCCceEEEEEccCc---eEeeccCCceEEEEecc
Confidence            9999999998765543                           45689999999998765   88899999999999999


Q ss_pred             CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v  377 (502)
                      +++++..+.+|.++|.++..+  + .++++|+.|++|++|++++.++.....+|...|.++.+.+.  ..+++|+.|+.|
T Consensus       320 n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  320 NGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI  394 (537)
T ss_pred             CcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence            999999999999999999998  4 78999999999999999999999888899999999988764  589999999999


Q ss_pred             EEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-CCCcEEEEE
Q 010748          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVA  456 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~  456 (502)
                      ++||+++.        .+++..+.+|..-+.++.+..   ++|++++.|++|++||..+++  ++....+ |.+.|.+++
T Consensus       395 kvWdl~~~--------~~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~l~  461 (537)
T KOG0274|consen  395 KVWDLRTK--------RKCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSALA  461 (537)
T ss_pred             EeecCCch--------hhhhhhhcCCccccccccccc---ceeEeccccccEEEeecccCc--eeeeeccCCcccEEEee
Confidence            99999986        368899999999998887663   889999999999999999998  5666666 678899988


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      +.  .. .+++++.+|.+++||+.++..+++.+....
T Consensus       462 ~~--~~-~il~s~~~~~~~l~dl~~~~~~~~l~~~~~  495 (537)
T KOG0274|consen  462 LG--KE-EILCSSDDGSVKLWDLRSGTLIRTLLSTDL  495 (537)
T ss_pred             cC--cc-eEEEEecCCeeEEEecccCchhhhhhhccc
Confidence            87  23 588899999999999999999988765543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.5e-28  Score=211.31  Aligned_cols=277  Identities=16%  Similarity=0.291  Sum_probs=217.2

Q ss_pred             CccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          138 DSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .++.|.++.||| ...++++++.++   .+++|.++....    +.......+.+.++|++|       +.+|+.+++|+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~---tVR~wevq~~g~----~~~ka~~~~~~PvL~v~W-------sddgskVf~g~   91 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDG---TVRIWEVQNSGQ----LVPKAQQSHDGPVLDVCW-------SDDGSKVFSGG   91 (347)
T ss_pred             cccchheeEeccccCceEEecccCC---ceEEEEEecCCc----ccchhhhccCCCeEEEEE-------ccCCceEEeec
Confidence            467899999999 577777888887   568888776532    222333345666799999       78999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCCcEEEEe
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWD  295 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v~vwd  295 (502)
                      .|+.+++|||.+++..                            ....|.++|.++.|-+.. ...|++||.|++|+.||
T Consensus        92 ~Dk~~k~wDL~S~Q~~----------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen   92 CDKQAKLWDLASGQVS----------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             cCCceEEEEccCCCee----------------------------eeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence            9999999999875322                            234799999999998762 23899999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc--ceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      ++...++.++. -.+.|.++..-.   .+++++..++.|.+|+++.+....  ......-.++|++..++.. .++.|+-
T Consensus       144 ~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsi  218 (347)
T KOG0647|consen  144 TRSSNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSI  218 (347)
T ss_pred             cCCCCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeee
Confidence            99999999887 467888887654   578999999999999998764332  2224556789999988766 4699999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCC---------CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---------AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      .|.+.+..+..+..       ..-+++..|..         .|++|+|+|.. ..|+|++.||++.+||-....  .+..
T Consensus       219 EGrv~iq~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~--kLk~  288 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART--KLKT  288 (347)
T ss_pred             cceEEEEecCCCCc-------cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh--hhhc
Confidence            99999999887532       34456666652         58899999987 899999999999999987665  5667


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~d  471 (502)
                      ...|.++|++++|+.+|.+...+.|.|
T Consensus       289 s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  289 SETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             cCcCCCccceeEecCCCCEEEEEeecc
Confidence            788999999999999999644455544

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.4e-27  Score=236.64  Aligned_cols=248  Identities=20%  Similarity=0.236  Sum_probs=185.5

Q ss_pred             ceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          194 LCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~~~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .+++|       +| ++++||+|+.|++|+||++.......                    ........+.+|...|.++
T Consensus        79 ~~v~f-------sP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------------~~~~~l~~L~gH~~~V~~l  131 (493)
T PTZ00421         79 IDVAF-------NPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------------NISDPIVHLQGHTKKVGIV  131 (493)
T ss_pred             EEEEE-------cCCCCCEEEEEeCCCEEEEEecCCCcccc--------------------ccCcceEEecCCCCcEEEE
Confidence            67777       66 78999999999999999997532110                    0012334567899999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      +|+|.+.++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.......|.
T Consensus       132 ~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~  210 (493)
T PTZ00421        132 SFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA  210 (493)
T ss_pred             EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence            9999866799999999999999999999999999999999999999998 899999999999999999887665455555


Q ss_pred             CC-eeEEEeCCCCCCEEEEE---eCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEe-CC
Q 010748          353 AD-VESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGS-TD  426 (502)
Q Consensus       353 ~~-v~~v~~~~~~~~~~~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s-~d  426 (502)
                      +. +..+.|.+.+..++.+|   +.++.|++||+++.        ..++.....+ ...+....|++++ ++|++++ .|
T Consensus       211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~--------~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgD  281 (493)
T PTZ00421        211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM--------ASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGE  281 (493)
T ss_pred             CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC--------CCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCC
Confidence            43 45778998766444444   34789999999976        2344444333 3456667789987 7777776 59


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      +.|++||+.++++.....+ .+..++..++|.|...  +-+ ..--..++|.+...
T Consensus       282 g~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~--~dv-~~~Ei~r~~~l~~~  333 (493)
T PTZ00421        282 GNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWS--LDT-RKCEIARFYALTYH  333 (493)
T ss_pred             CeEEEEEeeCCceEEEeec-cCCCCCcceEeccccc--ccc-cceeeeEEEEecCC
Confidence            9999999998875433332 3456788899998643  211 11224567776544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=4.5e-29  Score=212.46  Aligned_cols=289  Identities=19%  Similarity=0.300  Sum_probs=226.4

Q ss_pred             CCCCcccccccccc---CCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          135 DDEDSEDLEDMTIN---PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       135 ~~~~~~~v~~~~~~---p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      ...|.-.|-++.|+   |+|-+|++++.++.     -..-+...+.-...+..|..        .-|..+   ...+...
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~-----pmlr~g~tgdwigtfeghkg--------avw~~~---l~~na~~   73 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGK-----PMLRNGDTGDWIGTFEGHKG--------AVWSAT---LNKNATR   73 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCC-----chhccCCCCCcEEeeeccCc--------ceeeee---cCchhhh
Confidence            45688889999988   67889999998762     11111111101111222221        123211   1456677


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      .|+++.|=+-+|||.-+++.+..+                            .|...|.+++|+.+ .++|++|+.+..+
T Consensus        74 aasaaadftakvw~a~tgdelhsf----------------------------~hkhivk~~af~~d-s~~lltgg~ekll  124 (334)
T KOG0278|consen   74 AASAAADFTAKVWDAVTGDELHSF----------------------------EHKHIVKAVAFSQD-SNYLLTGGQEKLL  124 (334)
T ss_pred             hhhhcccchhhhhhhhhhhhhhhh----------------------------hhhheeeeEEeccc-chhhhccchHHHh
Confidence            888999999999998876655432                            58899999999999 7799999999999


Q ss_pred             EEEeCCCCe-eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEE
Q 010748          292 KIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       292 ~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~  370 (502)
                      +|||++..+ +...+.+|++.|..+-|+... +.+++++.|++||+||.+++.... ....+.+|+++.++++|.  +++
T Consensus       125 rvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~-sL~~~s~VtSlEvs~dG~--ilT  200 (334)
T KOG0278|consen  125 RVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQ-SLEFNSPVTSLEVSQDGR--ILT  200 (334)
T ss_pred             hhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEE-EEecCCCCcceeeccCCC--EEE
Confidence            999998764 567789999999999999888 888899999999999999988766 667889999999999875  666


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010748          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      -...+.|.+||..+.         .++.... -...|.+.+++|+. ..+++|+.|..++.||+.++..+..+ ..+|.+
T Consensus       201 ia~gssV~Fwdaksf---------~~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~g  268 (334)
T KOG0278|consen  201 IAYGSSVKFWDAKSF---------GLLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFG  268 (334)
T ss_pred             EecCceeEEeccccc---------cceeecc-CccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCC
Confidence            667788999999886         4454444 34568999999987 89999999999999999999843322 478999


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      +|.|+.|+|+|. +.|+|+.||+|++|.+..++..
T Consensus       269 pVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  269 PVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEECCCCc-eeeccCCCceEEEEEecCCCch
Confidence            999999999999 7999999999999999776654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=3.1e-28  Score=219.00  Aligned_cols=241  Identities=25%  Similarity=0.367  Sum_probs=199.9

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC--CcEEEEEe
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILASAS  286 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~sgs  286 (502)
                      +.++++|++||.++||+..                            .+......+|+++|.+++|.-..  ...|+++|
T Consensus       115 ~~~IltgsYDg~~riWd~~----------------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas  166 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK----------------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS  166 (423)
T ss_pred             CceEEEeecCCeeEEEecC----------------------------CceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence            7899999999999999986                            33444566999999999885432  23699999


Q ss_pred             cCCcEEEEeCCCCee----eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC---------------------
Q 010748          287 ADKQVKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI---------------------  341 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~---------------------  341 (502)
                      .|.++++|-++.+..    +..-++|...|.++...+++ ..+++|+.|.+|.+|+..+                     
T Consensus       167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~  245 (423)
T KOG0313|consen  167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK  245 (423)
T ss_pred             CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence            999999999887643    33345999999999999999 8999999999999999321                     


Q ss_pred             ----CCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          342 ----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       342 ----~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                          ..+.....+|..+|.++.|++  ...+++++.|.+|+.||+.++         ....++. ....++++.++|.. 
T Consensus       246 ~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg---------~~~~~~~-~~ksl~~i~~~~~~-  312 (423)
T KOG0313|consen  246 EGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG---------GLKSTLT-TNKSLNCISYSPLS-  312 (423)
T ss_pred             cccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecc---------cceeeee-cCcceeEeeccccc-
Confidence                112223457888999999998  347999999999999999987         3444443 46779999999976 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-cccccccC
Q 010748          418 NLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA-GISNRFSK  491 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~-~~~~~~~~  491 (502)
                      .+|++|+.|..|++||.+++.. ....++.+|.+.|.++.|+|...|+|++|+.|+++++||+++.+ .+..+.+|
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH  388 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence            9999999999999999998753 35677889999999999999999999999999999999999988 66666665

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.9e-28  Score=203.56  Aligned_cols=280  Identities=18%  Similarity=0.218  Sum_probs=218.8

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      +-+.+.|.++.|+-+|++.++++.+.   ++++|+-  ..+....-|..|...+    +.       .+.+.+...+++|
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdr---tvrLWNp--~rg~liktYsghG~EV----lD-------~~~s~Dnskf~s~   77 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDR---TVRLWNP--LRGALIKTYSGHGHEV----LD-------AALSSDNSKFASC   77 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCc---eEEeecc--cccceeeeecCCCcee----ee-------ccccccccccccC
Confidence            34778999999999999999999887   4555544  3332223344443222    11       1125678889999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|..|.+||++++...                           ..+.+|...|+.++|+.. ...+++||.|.++++||
T Consensus        78 GgDk~v~vwDV~TGkv~---------------------------Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wD  129 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVD---------------------------RRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWD  129 (307)
T ss_pred             CCCceEEEEEcccCeee---------------------------eecccccceeeEEEecCc-ceEEEeccccceeEEEE
Confidence            99999999999985433                           356799999999999998 67999999999999999


Q ss_pred             CCCC--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          296 VAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      .++.  ++++.+....+.|.++..+.   +.+++|+.||+++.||+|.++...-  -...+|+|++|++++. ..++++.
T Consensus       130 CRS~s~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~n-c~La~~l  203 (307)
T KOG0316|consen  130 CRSRSFEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGN-CSLASSL  203 (307)
T ss_pred             cccCCCCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCC-EEEEeec
Confidence            9765  68888888889999999976   5699999999999999998876542  3467899999999876 8889999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCe--eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV--CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      +++|++.|-.++         +.+....+|...-  ...+++... ..+++|+.||.|++||+....  .+..+..+...
T Consensus       204 ~stlrLlDk~tG---------klL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v  271 (307)
T KOG0316|consen  204 DSTLRLLDKETG---------KLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDET--QISKLSVVSTV  271 (307)
T ss_pred             cceeeecccchh---------HHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccce--eeeeeccCCce
Confidence            999999999987         7888888887643  334555544 789999999999999999887  45566666666


Q ss_pred             -EEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          452 -VFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       452 -v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                       |..+.++|.-.- |+++.. +.+.+|--
T Consensus       272 ~v~dl~~hp~~~~-f~~A~~-~~~~~~~~  298 (307)
T KOG0316|consen  272 IVTDLSCHPTMDD-FITATG-HGDLFWYQ  298 (307)
T ss_pred             eEEeeecccCccc-eeEecC-Cceeceee
Confidence             789999998764 444443 34666643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-28  Score=237.91  Aligned_cols=296  Identities=20%  Similarity=0.242  Sum_probs=234.3

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeec-cccCCC---cceeeeecCCCCCCCCCCEEEE
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAF---PLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~-~~~~~~---~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      +..+.++...++-+.|++++..    .++||.++....   .....|. ...+..   ...+.|.      .-..++|||
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs----~lklyai~~~~~---~~~~~~~~k~kqn~~~S~~DVkW~------~~~~NlIAT  105 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRS----LLKLYAINPNDF---SEKCNHRFKTKQNKFYSAADVKWG------QLYSNLIAT  105 (839)
T ss_pred             ccccceEeecCCcceeEEeccc----ceeeEeeCcccC---Ccceeeecccccceeeehhhcccc------cchhhhhee
Confidence            3457788888998888887654    689998876654   2222221 111111   1224443      236899999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      ++..|.|.+||+...                        ...+....+..|...|+++.|++...++|+|||.||+|++|
T Consensus       106 ~s~nG~i~vWdlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~  161 (839)
T KOG0269|consen  106 CSTNGVISVWDLNKS------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCW  161 (839)
T ss_pred             ecCCCcEEEEecCcc------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEE
Confidence            999999999999731                        12344456778999999999999999999999999999999


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc-cceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      |++..+...++.+.+..|..+.|+|..+..|+++...|.+++||+|.+... ..+..|.++|.|+.|+|+ ..++++|+.
T Consensus       162 DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGR  240 (839)
T KOG0269|consen  162 DLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGR  240 (839)
T ss_pred             eeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCC
Confidence            999999999999999999999999998899999999999999999987654 445689999999999995 569999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCc
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      |+.|+||++....       ..+..++. ...+|.++.|-|..+.+|++++.  |-.|+|||++..- ++..++..|...
T Consensus       241 DK~vkiWd~t~~~-------~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~  311 (839)
T KOG0269|consen  241 DKMVKIWDMTDSR-------AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDS  311 (839)
T ss_pred             CccEEEEeccCCC-------ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-ccceeeeccCcc
Confidence            9999999998753       13344433 35789999999998889999876  7789999998754 467788889999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       452 v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ++.++|....+.+|.+++.||+|..-.+++
T Consensus       312 vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  312 VTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             ccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            999999775555788999999876655443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-28  Score=239.70  Aligned_cols=258  Identities=20%  Similarity=0.332  Sum_probs=212.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .++-+.|++++. ..+.||.+.......+...-.+             . +      ..-.-.+..+.|+....++||++
T Consensus        48 nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k-------------~-k------qn~~~S~~DVkW~~~~~NlIAT~  106 (839)
T KOG0269|consen   48 NRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFK-------------T-K------QNKFYSAADVKWGQLYSNLIATC  106 (839)
T ss_pred             cCCcceeEEecc-cceeeEeeCcccCCcceeeecc-------------c-c------cceeeehhhcccccchhhhheee
Confidence            466666777764 5778888765444333322100             0 0      01123467788987778899999


Q ss_pred             ecCCcEEEEeCCC---CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          286 SADKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       286 s~dg~v~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      +..|.|.+||+..   .+.+..|..|...+.++.|++..+++|++|+.||+|++||+|..+...........|+.|.|+|
T Consensus       107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence            9999999999987   5677788999999999999999999999999999999999999888877778888899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      ..++.|+++.+.|.|++||+|..        .++...+.+|.++|.|+.|+|++ .+|||||.|++|+||++.+.+...+
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp--------~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~  257 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQP--------DRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPK  257 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCc--------hhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccce
Confidence            98899999999999999999988        58889999999999999999976 9999999999999999998776566


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCccccccccCCCC
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      .++. ...+|.++.|-|..+|.||+++.  |-.|+|||++..-.....|..+..
T Consensus       258 ~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  258 HTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD  310 (839)
T ss_pred             eEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence            6654 35789999999999999998765  568999999887766666655443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=7.5e-28  Score=215.55  Aligned_cols=254  Identities=19%  Similarity=0.268  Sum_probs=202.7

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+.+++|||+.|..-.||++.+++..                           ..+.+|++.|+++.|+.+ +.+||||
T Consensus        73 ~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------------~eltgHKDSVt~~~Fshd-gtlLATG  124 (399)
T KOG0296|consen   73 HPNNNLVATGGGDDLAFLWDISTGEFA---------------------------GELTGHKDSVTCCSFSHD-GTLLATG  124 (399)
T ss_pred             CCCCceEEecCCCceEEEEEccCCcce---------------------------eEecCCCCceEEEEEccC-ceEEEec
Confidence            689999999999999999999876522                           234589999999999999 6699999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      ..+|.|+||...++.....+...-..+.=|.|||.+ .+|++|+.||.+-+|.+.++.....+.+|..++++-.|.|+|+
T Consensus       125 dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK  203 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK  203 (399)
T ss_pred             CCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence            999999999999999888887667778889999988 9999999999999999999766666788999999999999976


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCC----------------------------------CCccceEEe--------cc
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDST----------------------------------SQQSSFTLH--------AH  403 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~----------------------------------~~~~~~~~~--------~h  403 (502)
                       .++++..||+|++|++.++.+.....                                  ..+.+....        .+
T Consensus       204 -r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~  282 (399)
T KOG0296|consen  204 -RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ  282 (399)
T ss_pred             -eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence             79999999999999999874310000                                  000001111        12


Q ss_pred             CCCeeEEEEcCCC--CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          404 DKAVCTISYNPLV--PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       404 ~~~v~~l~~sp~~--~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ...+.|+.+.|..  -.++|+|+.||+|.|||+...++   +..-.|..+|..+.|.+ ..| |++++.+|.|+.||.++
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~---R~~c~he~~V~~l~w~~-t~~-l~t~c~~g~v~~wDaRt  357 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL---RHICEHEDGVTKLKWLN-TDY-LLTACANGKVRQWDART  357 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchh---heeccCCCceEEEEEcC-cch-heeeccCceEEeeeccc
Confidence            2223333333321  14788999999999999998873   33445778899999999 565 77889999999999999


Q ss_pred             CccccccccCCCC
Q 010748          482 DAGISNRFSKYSK  494 (502)
Q Consensus       482 ~~~~~~~~~~~~~  494 (502)
                      |.++..+.+|...
T Consensus       358 G~l~~~y~GH~~~  370 (399)
T KOG0296|consen  358 GQLKFTYTGHQMG  370 (399)
T ss_pred             cceEEEEecCchh
Confidence            9999998888654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.4e-27  Score=241.51  Aligned_cols=314  Identities=18%  Similarity=0.294  Sum_probs=228.5

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCC----CC---CCeeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GD---PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  210 (502)
                      ++..|.++.++|++..+++|+.-.|. .+.||..+.-..    ..   +.+...+.. ..+...|+.|       ++||+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~-~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~-------S~dG~   82 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDG-GIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRF-------SPDGS   82 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccc-cceeeccccccchhhhhhcccchhheeecc-ccCceeEEEE-------CCCCC
Confidence            34568999999999999999833332 234776543221    00   111111111 1233367777       89999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~  290 (502)
                      +||+|+.|+.|.||..... .  ....+|....      .+.....+....+.+|...|..++|+|+ ..+|+++|.|++
T Consensus        83 ~lAsGSDD~~v~iW~~~~~-~--~~~~fgs~g~------~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~Dns  152 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAEI-G--SGTVFGSTGG------AKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNS  152 (942)
T ss_pred             eEeeccCcceEEEeeeccc-C--Cccccccccc------ccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccce
Confidence            9999999999999998741 1  1111211111      0112234556677899999999999998 669999999999


Q ss_pred             EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE------eecCCeeEEEeCCCC
Q 010748          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHA  364 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~v~~v~~~~~~  364 (502)
                      |.||+..+.+++..+.+|.+.|..+.|.|-| ++|++-+.|++|++|.+..........      .....+..+.|+|+|
T Consensus       153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG  231 (942)
T KOG0973|consen  153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG  231 (942)
T ss_pred             EEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence            9999999999999999999999999999999 999999999999999976543322111      123457899999998


Q ss_pred             CCEEEEE-eCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC--------C----CC----EEEEEe
Q 010748          365 EHSFVVS-LEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------V----PN----LLATGS  424 (502)
Q Consensus       365 ~~~~~~~-~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--------~----~~----~l~t~s  424 (502)
                      . +|++. +.++   ++.|.+-.+.         +.-..+.+|.+++.+++|+|.        |    +.    .+|+|+
T Consensus       232 ~-~las~nA~n~~~~~~~IieR~tW---------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS  301 (942)
T KOG0973|consen  232 H-HLASPNAVNGGKSTIAIIERGTW---------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS  301 (942)
T ss_pred             C-eecchhhccCCcceeEEEecCCc---------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence            7 45554 3333   5667665443         667788999999999999982        1    11    788999


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .|++|.||.....+|..+ ...-....|..++|+|||. .|.+++.||+|.+..+...+
T Consensus       302 qDrSlSVW~T~~~RPl~v-i~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  302 QDRSLSVWNTALPRPLFV-IHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCccEEEEecCCCCchhh-hhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcchHH
Confidence            999999999988776433 3333457899999999998 47778999999999986543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.6e-28  Score=219.44  Aligned_cols=293  Identities=19%  Similarity=0.404  Sum_probs=232.8

Q ss_pred             CcccCCCCCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC
Q 010748          129 PYLKDKDDEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       129 ~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~  207 (502)
                      |++..- ..|.+.|.+++=+|.. ..+++|+.+|   .++||.+.....  ...+.-|...+.++  |+           
T Consensus        57 PFv~~L-~gHrdGV~~lakhp~~ls~~aSGs~DG---~VkiWnlsqR~~--~~~f~AH~G~V~Gi--~v-----------  117 (433)
T KOG0268|consen   57 PFVGSL-DGHRDGVSCLAKHPNKLSTVASGSCDG---EVKIWNLSQREC--IRTFKAHEGLVRGI--CV-----------  117 (433)
T ss_pred             cchhhc-cccccccchhhcCcchhhhhhccccCc---eEEEEehhhhhh--hheeecccCceeeE--Ee-----------
Confidence            555432 5699999999999998 7889999998   457777765442  23334454444332  22           


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +...+++++.|.+|+.|.++..    +.                        ..+ .....++.|.-+.. .+.+|||+.
T Consensus       118 ~~~~~~tvgdDKtvK~wk~~~~----p~------------------------~ti-lg~s~~~gIdh~~~-~~~FaTcGe  167 (433)
T KOG0268|consen  118 TQTSFFTVGDDKTVKQWKIDGP----PL------------------------HTI-LGKSVYLGIDHHRK-NSVFATCGE  167 (433)
T ss_pred             cccceEEecCCcceeeeeccCC----cc------------------------eee-eccccccccccccc-cccccccCc
Confidence            2267888889999999998741    11                        111 12356777777766 568999987


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  367 (502)
                      +  |-|||.....++.++.--...|.++.|+|....+|++++.|+.|.+||+|+..+.. .......-+.++|+| ....
T Consensus       168 ~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~mRTN~IswnP-eafn  243 (433)
T KOG0268|consen  168 Q--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTMRTNTICWNP-EAFN  243 (433)
T ss_pred             e--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeeccccceecCc-cccc
Confidence            4  99999999999999988889999999999998999999999999999999988765 455666778999999 5567


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                      |+++++|..++.||+|..        ..++....+|.+.|.++.|||.| .-+++||.|.+|+||.++.+...-++ ...
T Consensus       244 F~~a~ED~nlY~~DmR~l--------~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiY-htk  313 (433)
T KOG0268|consen  244 FVAANEDHNLYTYDMRNL--------SRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIY-HTK  313 (433)
T ss_pred             eeeccccccceehhhhhh--------cccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhh-hHh
Confidence            999999999999999998        58889999999999999999998 89999999999999999887632222 223


Q ss_pred             CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      ..+.|+|+.|+.|.+| +++|+.|+.|++|.....+.+
T Consensus       314 RMq~V~~Vk~S~Dsky-i~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  314 RMQHVFCVKYSMDSKY-IISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             hhheeeEEEEeccccE-EEecCCCcceeeeecchhhhc
Confidence            4567999999999997 889999999999998765554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.9e-28  Score=220.48  Aligned_cols=282  Identities=18%  Similarity=0.299  Sum_probs=219.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      +-|..++.++.|.++...|++|+.+.   .+++|....... ....|++..     +..+.+.       |.++++++++
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr---~Ik~W~v~~~k~~~~~tLaGs~-----g~it~~d-------~d~~~~~~iA  236 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDR---IIKLWNVLGEKSELISTLAGSL-----GNITSID-------FDSDNKHVIA  236 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhh---hhhhhhcccchhhhhhhhhccC-----CCcceee-------ecCCCceEEe
Confidence            45889999999999999999999887   456665543321 001111110     0012222       3678999999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      ++.|+.+++|+++.                           .+....+.+|++.|+++.|... ...+++|+.|.+|++|
T Consensus       237 as~d~~~r~Wnvd~---------------------------~r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  237 ASNDKNLRLWNVDS---------------------------LRLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLW  288 (459)
T ss_pred             ecCCCceeeeeccc---------------------------hhhhhhhcccccceeeehhhcc-ccceeeccccchhhhh
Confidence            99999999999985                           3445567799999999999887 4459999999999999


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d  374 (502)
                      |+....|.+++. ..+.+..|..++   ..+++|-.|+.|++||.|+..... .....+.|+++..++++. .+++++.|
T Consensus       289 Dl~k~~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~-sv~~gg~vtSl~ls~~g~-~lLsssRD  362 (459)
T KOG0288|consen  289 DLQKAYCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR-SVPLGGRVTSLDLSMDGL-ELLSSSRD  362 (459)
T ss_pred             hhhhhheecccc-ccccccceEecc---eeeeecccccceEEEeccCCceee-EeecCcceeeEeeccCCe-EEeeecCC
Confidence            999999988875 345566666663   678999999999999999988765 455667999999999765 67788999


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEecc----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      .++.++|+++.         .....+.+.    ....+.+.|||++ .|+++||.||.|+||++.+++...+........
T Consensus       363 dtl~viDlRt~---------eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~  432 (459)
T KOG0288|consen  363 DTLKVIDLRTK---------EIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA  432 (459)
T ss_pred             Cceeeeecccc---------cEEEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCc
Confidence            99999999987         333333321    2348899999998 999999999999999999998655555444444


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          451 AVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       451 ~v~~~~~spd~~~ll~sg~~dg~i~vw  477 (502)
                      .|++++|+|.|.+ |++++.++.+.+|
T Consensus       433 aI~s~~W~~sG~~-Llsadk~~~v~lW  458 (459)
T KOG0288|consen  433 AITSLSWNPSGSG-LLSADKQKAVTLW  458 (459)
T ss_pred             ceEEEEEcCCCch-hhcccCCcceEec
Confidence            6999999999998 6678889999999

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=9e-27  Score=204.58  Aligned_cols=272  Identities=22%  Similarity=0.364  Sum_probs=212.1

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ..+.|.++.|+|..+.|++++.++   +|++|.......   .+...|..++    ++.++.        +...+++|+.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDg---slrlYdv~~~~l---~~~~~~~~pl----L~c~F~--------d~~~~~~G~~   73 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDG---SLRLYDVPANSL---KLKFKHGAPL----LDCAFA--------DESTIVTGGL   73 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccC---cEEEEeccchhh---hhheecCCce----eeeecc--------CCceEEEecc
Confidence            457899999999999999999998   667777766543   3334444444    666663        4778999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      ||.|+.+|++++...                            .+..|..+|.||.+++. ...+++||+|++|++||.+
T Consensus        74 dg~vr~~Dln~~~~~----------------------------~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNED----------------------------QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             CceEEEEEecCCcce----------------------------eeccCCCceEEEEeecc-CCeEEEcccCccEEEEecc
Confidence            999999999864332                            33469999999999987 6699999999999999999


Q ss_pred             CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce--EeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      ...+..++.. ..+|.|+....   +.|++|+.+..+.+||+|+.......  ....-.++|+++.|.+. -+++++-+|
T Consensus       125 ~~~~~~~~d~-~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieG  199 (323)
T KOG1036|consen  125 NKVVVGTFDQ-GKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEG  199 (323)
T ss_pred             cccccccccc-CceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecc
Confidence            8666666653 45899988764   67999999999999999987654322  24566799999999655 478888999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccC---------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHD---------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      .|.+=.+.....     .....+.+..|.         -+|++|+|+|-. +.|+||+.||.|.+||+.+.+  .+..+.
T Consensus       200 RVavE~~d~s~~-----~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK--rl~q~~  271 (323)
T KOG1036|consen  200 RVAVEYFDDSEE-----AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK--RLKQLA  271 (323)
T ss_pred             eEEEEccCCchH-----HhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh--hhhhcc
Confidence            988765544311     024456666665         379999999986 899999999999999999887  455666


Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEeC
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~~  470 (502)
                      .....|.+++|+.+|. +||+|++
T Consensus       272 ~~~~SI~slsfs~dG~-~LAia~s  294 (323)
T KOG1036|consen  272 KYETSISSLSFSMDGS-LLAIASS  294 (323)
T ss_pred             CCCCceEEEEeccCCC-eEEEEec
Confidence            6677899999999999 6888765

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=4.2e-27  Score=235.14  Aligned_cols=235  Identities=27%  Similarity=0.435  Sum_probs=207.6

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      ..++++|+.+++|++|+...+..                          ....+.+|.+.|+++++.. +..+|++|+.|
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~--------------------------i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D  270 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYL--------------------------ILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD  270 (537)
T ss_pred             cCeEEecCCCceeEEeecccceE--------------------------EEeeccCCCCCceeEEEec-CCCEEEEEecC
Confidence            77999999999999999875332                          2223679999999999987 46799999999


Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~  368 (502)
                      .++++||+.+|.|.+++.+|.+.|.++...+   .++++|+.|.+|++|++.++.......+|..+|.++..+   ..++
T Consensus       271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~l  344 (537)
T KOG0274|consen  271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLL  344 (537)
T ss_pred             CcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEE
Confidence            9999999999999999999999999998876   568899999999999999998888666799999999998   3489


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC
Q 010748          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK  448 (502)
Q Consensus       369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~  448 (502)
                      ++|+.||+|++|++.+.         +++..+.+|...|.++.+.+.  ..+++|+.|++|++||+.+.. .++..+.+|
T Consensus       345 vsgs~d~~v~VW~~~~~---------~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h  412 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTG---------KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR-KCIHTLQGH  412 (537)
T ss_pred             EEEecCceEEEEEhhhc---------eeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-hhhhhhcCC
Confidence            99999999999999976         899999999999999988863  789999999999999999982 388899999


Q ss_pred             CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       449 ~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ..-+..+.+..  . .|++++.|+.|++||..++++++...++
T Consensus       413 ~~~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  413 TSLVSSLLLRD--N-FLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             ccccccccccc--c-eeEeccccccEEEeecccCceeeeeccC
Confidence            98887666644  4 5999999999999999999999888775

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=5.1e-27  Score=218.69  Aligned_cols=253  Identities=19%  Similarity=0.254  Sum_probs=193.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .|.|-.|++|+.|-.|++||+..++...+.                      .+...-.....|.+++|++.+. .|++.
T Consensus       176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------------fr~l~P~E~h~i~sl~ys~Tg~-~iLvv  232 (641)
T KOG0772|consen  176 DPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------------FRQLQPCETHQINSLQYSVTGD-QILVV  232 (641)
T ss_pred             cCCCceeeeccccceEEEEecccccccchh----------------------hhccCcccccccceeeecCCCC-eEEEE
Confidence            789999999999999999999876643321                      1111223456899999999954 66666


Q ss_pred             ecCCcEEEEeCCCCeeeE------------eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee--
Q 010748          286 SADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--  351 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--  351 (502)
                      +.....+|+|-.....+.            .-++|...++|.+|+|.....|+|++.||++++|++...+.....+.+  
T Consensus       233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence            667789999954322222            225799999999999999899999999999999999876654433332  


Q ss_pred             ----cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC--CeeEEEEcCCCCCEEEEEeC
Q 010748          352 ----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       352 ----~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~  425 (502)
                          .-.+++++|++++. .|++|+.||.|.+|+.+....      ......-.+|..  .|+||.||++| ++|++-+.
T Consensus       313 ~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v------~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~  384 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV------RPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGF  384 (641)
T ss_pred             CCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCccc------ccceEeeeccCCCCceeEEEecccc-chhhhccC
Confidence                33589999999987 699999999999999876532      123344467876  89999999998 99999999


Q ss_pred             CCcEEEEECCCCCeeEEEEec--CCCCcEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCccccccccC
Q 010748          426 DKMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~ll~sg~~------dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      |++++|||++..+. ++....  ...-+-+.++|||+.+ ||++|.+      .|.+.+||..+-..++++.-.
T Consensus       385 D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  385 DDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             CCceeeeecccccc-chhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence            99999999998653 333332  2334567899999998 6888764      367999999988888776543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.4e-25  Score=196.62  Aligned_cols=245  Identities=18%  Similarity=0.282  Sum_probs=194.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +++|.+|++++.|.+|+|||...+..+..                           ...+.-.|..++|... .+.++.+
T Consensus        23 s~~G~~litss~dDsl~LYd~~~g~~~~t---------------------------i~skkyG~~~~~Fth~-~~~~i~s   74 (311)
T KOG1446|consen   23 SDDGLLLITSSEDDSLRLYDSLSGKQVKT---------------------------INSKKYGVDLACFTHH-SNTVIHS   74 (311)
T ss_pred             cCCCCEEEEecCCCeEEEEEcCCCceeeE---------------------------eecccccccEEEEecC-CceEEEc
Confidence            89999999999999999999976544332                           2234456777777665 4466666


Q ss_pred             ec--CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748          286 SA--DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       286 s~--dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  363 (502)
                      +.  |.+|+..++.+.+.++.|.||...|.+|+.+|.+ ..+++++.|++|++||+|..++...+..  ..-..++|+|.
T Consensus        75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~  151 (311)
T KOG1446|consen   75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPE  151 (311)
T ss_pred             cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCC
Confidence            66  8899999999999999999999999999999999 8999999999999999998887764332  33445789997


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe---ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      |- +|+++.....|++||+|+...       .|..++.   ......+.+.|+|+| ++|+.++..+.+++.|.-++...
T Consensus       152 GL-ifA~~~~~~~IkLyD~Rs~dk-------gPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~  222 (311)
T KOG1446|consen  152 GL-IFALANGSELIKLYDLRSFDK-------GPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVK  222 (311)
T ss_pred             Cc-EEEEecCCCeEEEEEecccCC-------CCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEe
Confidence            64 778887777999999998742       3444443   336778999999999 88888888999999999998854


Q ss_pred             EEEEecCCCCc-EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          441 CIASRNPKAGA-VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       441 ~~~~~~~~~~~-v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ..+......+. -...+|+||++| +.+|+.||+|.+|++.++..+...-+.
T Consensus       223 ~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  223 STFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             eeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            44444333332 257889999996 778999999999999999998776664

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.1e-26  Score=198.92  Aligned_cols=230  Identities=20%  Similarity=0.289  Sum_probs=185.6

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEe
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs  286 (502)
                      ++.|+|+|+.|-+|+|||+.....                           ...+..|.+.|++|.|.+.. .+.|++|+
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~q---------------------------lg~ll~HagsitaL~F~~~~S~shLlS~s  104 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRKQ---------------------------LGILLSHAGSITALKFYPPLSKSHLLSGS  104 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchhh---------------------------hcceeccccceEEEEecCCcchhheeeec
Confidence            699999999999999999974222                           22344699999999999872 13799999


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      .||.|.+|+.....++.++++|.+.|+.++.||.+ .+.++.+.|+.+++|++-.++... ........+.+.|+|.|. 
T Consensus       105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~-v~~L~~~at~v~w~~~Gd-  181 (362)
T KOG0294|consen  105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAF-VLNLKNKATLVSWSPQGD-  181 (362)
T ss_pred             CCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccce-eeccCCcceeeEEcCCCC-
Confidence            99999999999999999999999999999999999 999999999999999998776543 444555566699999887 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      .|+++..+ .|-+|.+.+.         . ++........+.++.|..  ...|++|+.++.|++||..+..  +...+.
T Consensus       182 ~F~v~~~~-~i~i~q~d~A---------~-v~~~i~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~--~~~~~~  246 (362)
T KOG0294|consen  182 HFVVSGRN-KIDIYQLDNA---------S-VFREIENPKRILCATFLD--GSELLVGGDNEWISLKDTDSDT--PLTEFL  246 (362)
T ss_pred             EEEEEecc-EEEEEecccH---------h-HhhhhhccccceeeeecC--CceEEEecCCceEEEeccCCCc--cceeee
Confidence            45555544 5888988764         2 222222335567777765  3789999999999999998865  677888


Q ss_pred             CCCCcEEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          447 PKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       447 ~~~~~v~~~~~--spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +|..+|-.+.+  .|++. +|+++++||.|+|||+....
T Consensus       247 AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  247 AHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             cchhheeeeEEEecCCce-EEEEeccCceEEEEEccccc
Confidence            99999999984  45665 69999999999999998773

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.4e-27  Score=226.59  Aligned_cols=246  Identities=22%  Similarity=0.330  Sum_probs=207.4

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      |.++||.+||.||.|++|++.......                     .......+..|.+.|+.+....+ ++.|+|+|
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------------s~~~~asme~HsDWVNDiiL~~~-~~tlIS~S   92 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEP---------------------STPYIASMEHHSDWVNDIILCGN-GKTLISAS   92 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCc---------------------ccchhhhhhhhHhHHhhHHhhcC-CCceEEec
Confidence            678899999999999999986422111                     01124456789999999999988 55899999


Q ss_pred             cCCcEEEEeCCCC--eeeEeeccCCCCeEEEEE-cCCCCcEEEEEeCCCcEEEEecCCCCC--cc--------ceE-eec
Q 010748          287 ADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAW-NHHSPQILLSGSFDRSVVMKDARISTH--SG--------FKW-AVA  352 (502)
Q Consensus       287 ~dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~--------~~~-~~~  352 (502)
                      .|-+|++|+...+  -|+.++..|.+.|.|+++ .++. .++++|+.|+.|.+||+.++..  ..        ... ++.
T Consensus        93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             CCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence            9999999999877  688899999999999999 5555 8999999999999999997632  11        111 456


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      ..|.+++.++.+ ..+++|+..+.|++||.++.         ..+..+.+|+..|.++..+++| ..++++|.||+|++|
T Consensus       172 ~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  172 DSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLW  240 (735)
T ss_pred             cceeeeecCCcc-eEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCC-CeEeecCCCceEEee
Confidence            779999999976 48999999999999999997         7788889999999999999998 899999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |+...+  |+.++..|...|+++..+|+-.+ +.+|+.||.|..=|+++......++
T Consensus       241 dLgqQr--Cl~T~~vH~e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~~~~tlic  294 (735)
T KOG0308|consen  241 DLGQQR--CLATYIVHKEGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNPAKSTLIC  294 (735)
T ss_pred             eccccc--eeeeEEeccCceEEEeeCCCcce-EEecCCCCcEEecccCCchhheEee
Confidence            998777  89999999999999999999885 8999999999999998854433333

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9e-27  Score=197.93  Aligned_cols=241  Identities=24%  Similarity=0.383  Sum_probs=193.1

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEe-ccCCCcEEEEEe
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~sgs  286 (502)
                      -|++|||++.|++|+|+.+......                        .....+.+|.++|+.++| +|..+.+|||++
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s------------------------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs   77 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQS------------------------KLLAELTGHSGPVWKVAWAHPKFGTILASCS   77 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCc------------------------eeeeEecCCCCCeeEEeecccccCcEeeEee
Confidence            4999999999999999998653322                        334456799999999999 567788999999


Q ss_pred             cCCcEEEEeCCCCe--eeEeeccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCC---CccceEeecCCeeEEEe
Q 010748          287 ADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVESLAW  360 (502)
Q Consensus       287 ~dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~~  360 (502)
                      .||.|.||.-.+++  ....+..|...|++++|.|.+ +-+|++++.||.|.+.+.+...   .......|.-.|++++|
T Consensus        78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence            99999999988774  344557899999999999875 2578899999999999988762   23345678889999999


Q ss_pred             CCC---C----------CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC---CCEEEEEe
Q 010748          361 DPH---A----------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---PNLLATGS  424 (502)
Q Consensus       361 ~~~---~----------~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---~~~l~t~s  424 (502)
                      .|.   |          .+.|++|+.|..|+||+.....       ...-.++.+|...|..++|.|..   ..+||+|+
T Consensus       158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S  230 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS  230 (299)
T ss_pred             cCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence            985   2          1359999999999999998762       24455689999999999999964   35899999


Q ss_pred             CCCcEEEEECCCC-CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          425 TDKMVKLWDLSNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       425 ~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      .||+|.||-.... .+.....+......++++.||+.|. +|+.++.|+.|.+|.-.
T Consensus       231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             CCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeC
Confidence            9999999987632 1112222333457799999999998 69999999999999754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.9e-25  Score=196.08  Aligned_cols=282  Identities=17%  Similarity=0.247  Sum_probs=208.5

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ....|+++.|+++|.+|++++.++   .|++|.......  ......+...+    -+..+       ....+.++.++.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dD---sl~LYd~~~g~~--~~ti~skkyG~----~~~~F-------th~~~~~i~sSt   76 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDD---SLRLYDSLSGKQ--VKTINSKKYGV----DLACF-------THHSNTVIHSST   76 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCC---eEEEEEcCCCce--eeEeecccccc----cEEEE-------ecCCceEEEccC
Confidence            356899999999999999988776   455555544332  11111111111    12222       233445555554


Q ss_pred             --CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          218 --EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       218 --dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                        |.+||..++.+                           .+....+.||...|++|+.+|- ...++|++.|++|++||
T Consensus        77 k~d~tIryLsl~d---------------------------NkylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWD  128 (311)
T KOG1446|consen   77 KEDDTIRYLSLHD---------------------------NKYLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWD  128 (311)
T ss_pred             CCCCceEEEEeec---------------------------CceEEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeE
Confidence              78999999875                           4445578899999999999998 47999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-ccceE----eecCCeeEEEeCCCCCCEEEE
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKW----AVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~----~~~~~v~~v~~~~~~~~~~~~  370 (502)
                      ++..+|...+.....  ..++|.|.| -++|++.....|++||+|.-.. +...+    ......+.+.|+|+|+ .++.
T Consensus       129 lR~~~cqg~l~~~~~--pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLl  204 (311)
T KOG1446|consen  129 LRVKKCQGLLNLSGR--PIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILL  204 (311)
T ss_pred             ecCCCCceEEecCCC--cceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEE
Confidence            999888877754333  357899999 8888888888999999997632 22222    2346789999999987 7888


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe---eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                      ++..+.+++.|.-.+         ....++..+...-   .+.+|+|++ +++++|+.||+|.+|++.++..  +..+.+
T Consensus       205 sT~~s~~~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~  272 (311)
T KOG1446|consen  205 STNASFIYLLDAFDG---------TVKSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK--VAVLRG  272 (311)
T ss_pred             EeCCCcEEEEEccCC---------cEeeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE--eeEecC
Confidence            889999999999887         4566666555432   577899998 9999999999999999999984  444444


Q ss_pred             -CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          448 -KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       448 -~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                       +.+++.++.|+|... ++++++  ..+.+|=....
T Consensus       273 ~~~~~~~~~~fnP~~~-mf~sa~--s~l~fw~p~~~  305 (311)
T KOG1446|consen  273 PNGGPVSCVRFNPRYA-MFVSAS--SNLVFWLPDED  305 (311)
T ss_pred             CCCCCccccccCCcee-eeeecC--ceEEEEecccc
Confidence             789999999999876 576554  46888866543

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=2.5e-25  Score=223.13  Aligned_cols=231  Identities=14%  Similarity=0.195  Sum_probs=170.8

Q ss_pred             cceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee
Q 010748          193 PLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      .++++|       +|+ +++||+|+.||.|+||++........                   ........+.+|...|.+
T Consensus        77 V~~laf-------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------------~i~~p~~~L~gH~~~V~s  130 (568)
T PTZ00420         77 ILDLQF-------NPCFSEILASGSEDLTIRVWEIPHNDESVK-------------------EIKDPQCILKGHKKKISI  130 (568)
T ss_pred             EEEEEE-------cCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------ccccceEEeecCCCcEEE
Confidence            478888       665 88999999999999999975321000                   001122345689999999


Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  351 (502)
                      ++|+|++..+|++|+.|++|+|||+.+++.+..+. |...|.+++|+|+| .+|++++.|+.|++||++++........|
T Consensus       131 Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            99999977678899999999999999998887776 56789999999999 89999999999999999998776655566


Q ss_pred             cCCeeE-----EEeCCCCCCEEEEEeCC----CcEEEEECCCCCCCCCCCCCccceEEe--ccCCCeeEEEEcCCCCCEE
Q 010748          352 AADVES-----LAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       352 ~~~v~~-----v~~~~~~~~~~~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l  420 (502)
                      .+.+.+     ..|++++. ++++++.+    +.|++||++..        ..++..+.  .+.+.+......+.+ .++
T Consensus       209 ~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~--------~~pl~~~~ld~~~~~L~p~~D~~tg-~l~  278 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNT--------TSALVTMSIDNASAPLIPHYDESTG-LIY  278 (568)
T ss_pred             cCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCC--------CCceEEEEecCCccceEEeeeCCCC-CEE
Confidence            665433     23456655 66666555    37999999975        24454443  233333334334444 889


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC
Q 010748          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                      ++|+.|++|++|++..+....+..+ .+..++.+++|.|...
T Consensus       279 lsGkGD~tIr~~e~~~~~~~~l~~~-~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGSIRKVNEY-KSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEECCCeEEEEEccCCcEEeeccc-ccCCCccceEEccccc
Confidence            9999999999999987754333333 3667889999999853

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.8e-27  Score=241.69  Aligned_cols=304  Identities=22%  Similarity=0.345  Sum_probs=233.3

Q ss_pred             cccccCCCc-eEEEEEecCC-------cceeEEEEEecCCCCC-CCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          144 DMTINPNDA-VIVCARNEDD-------VSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       144 ~~~~~p~~~-~l~~~~~~~~-------~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      -++|+|.+. ++++|...+.       .++++||.++...... ...+..+  .......++.|..+..  .+ .-+||.
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~--~~-~GlIaG   85 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGS--HS-HGLIAG   85 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCC--Cc-cceeec
Confidence            467888887 5555543321       1367888777555410 1112111  1222235777843311  01 135899


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      |..||.|.+|+....                     .+............|++.|..|.|++..+++||+|+.+|.|.||
T Consensus        86 G~edG~I~ly~p~~~---------------------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   86 GLEDGNIVLYDPASI---------------------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             cccCCceEEecchhh---------------------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            999999999998642                     12223444455668999999999999988999999999999999


Q ss_pred             eCCCCeeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec--CCeeEEEeCCCCCCEEEE
Q 010748          295 DVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       295 d~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~  370 (502)
                      |+...+.-.++  ....+.|.+++|+..-.++|++++.+|.+.|||+|..+.+..+..+.  ..+..++|+|++...+++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            99876544444  22467899999999888999999999999999999987655443333  347889999998888888


Q ss_pred             EeCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748          371 SLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       371 ~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                      ++.|.   .|.+||+|..        ..++..+.+|...|.++.|++.++.+|++++.|+.|.+|+..+++  .+..+..
T Consensus       225 As~dd~~PviqlWDlR~a--------ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE--vl~~~p~  294 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFA--------SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE--VLGELPA  294 (1049)
T ss_pred             ecCCCCCceeEeeccccc--------CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce--EeeecCC
Confidence            87655   5999999987        578888899999999999999988999999999999999999988  5777777


Q ss_pred             CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      ....++.+.|+|..+.+|++++-+|.|.||.+.+..
T Consensus       295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  295 QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            788999999999999889999999999999997765

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=6.5e-26  Score=198.42  Aligned_cols=243  Identities=21%  Similarity=0.324  Sum_probs=187.6

Q ss_pred             CCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          204 KDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       204 ~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +||| ...+|++|+.||+||+|++.......+                         .....|.++|.+++|+.+ +..+
T Consensus        34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------------------ka~~~~~~PvL~v~Wsdd-gskV   87 (347)
T KOG0647|consen   34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------------------KAQQSHDGPVLDVCWSDD-GSKV   87 (347)
T ss_pred             EeccccCceEEecccCCceEEEEEecCCcccc-------------------------hhhhccCCCeEEEEEccC-CceE
Confidence            3477 577888999999999999975322211                         123469999999999999 5799


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeC
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      ++|+.|+.+++||+.+++ +..+..|.++|.++.|-+... ..|+|||.|.+|++||+|....+. ....+..+.++..-
T Consensus        88 f~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-t~~LPeRvYa~Dv~  165 (347)
T KOG0647|consen   88 FSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-TLQLPERVYAADVL  165 (347)
T ss_pred             EeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee-eeeccceeeehhcc
Confidence            999999999999999994 566778999999999987652 489999999999999999877655 56677778777654


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      .  + +++++..+..|.+|+++++..        ..... ..-.-.+.||+..++. ...+.|+-.|.+-+..+..+.+.
T Consensus       166 ~--p-m~vVata~r~i~vynL~n~~t--------e~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~  233 (347)
T KOG0647|consen  166 Y--P-MAVVATAERHIAVYNLENPPT--------EFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPK  233 (347)
T ss_pred             C--c-eeEEEecCCcEEEEEcCCCcc--------hhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCcc
Confidence            3  3 788899999999999987632        11111 1123457888888887 55689999999999998876443


Q ss_pred             EEEEecCCC---------CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          441 CIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       441 ~~~~~~~~~---------~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .-+++..|.         ..|++++|+|... .|+|+|+||++.+||-.....+..
T Consensus       234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             CceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhc
Confidence            444444443         3688999999877 699999999999999776655543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=204.84  Aligned_cols=283  Identities=17%  Similarity=0.239  Sum_probs=231.3

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+.++.+.|..+.+++|+.+.     .+.+++...++...++..|.       ..+.|+.+    +|+...+++++.|-
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~-----~av~~d~~s~q~l~~~~Gh~-------kki~~v~~----~~~~~~v~~aSad~  283 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDK-----TAVLFDKPSNQILATLKGHT-------KKITSVKF----HKDLDTVITASADE  283 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCC-----ceEEEecchhhhhhhccCcc-------eEEEEEEe----ccchhheeecCCcc
Confidence            5688999999989999999886     45555555543334454443       33445433    88999999999999


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|+||.......                           ......|..+|+.+..+|. +.||++++.||+..+.|++++
T Consensus       284 ~i~vws~~~~s~---------------------------~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g  335 (506)
T KOG0289|consen  284 IIRVWSVPLSSE---------------------------PTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSG  335 (506)
T ss_pred             eEEeeccccccC---------------------------ccccccccccceeeeeccC-CcEEEEecCCceEEEEEccCC
Confidence            999999864321                           1233479999999999999 569999999999999999999


Q ss_pred             eeeEeeccC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748          300 KCNLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       300 ~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v  377 (502)
                      .++......  .-.+++.+|||+| .+|.+|+.||.|+|||+..+.....+.+|.++|..++|+-+| +++++++.|+.|
T Consensus       336 ~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V  413 (506)
T KOG0289|consen  336 SQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSV  413 (506)
T ss_pred             cEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeE
Confidence            988777542  2358999999999 999999999999999999999888778899999999999865 689999999999


Q ss_pred             EEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748          378 KGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      ++||+|..         +...++... ..++.++.|.+.| .+|+.++.+=+|++++-.+....++..+..|.+..+++.
T Consensus       414 ~lwDLRKl---------~n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~  483 (506)
T KOG0289|consen  414 KLWDLRKL---------KNFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVR  483 (506)
T ss_pred             EEEEehhh---------cccceeeccccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceee
Confidence            99999987         344444433 3479999999998 899999888888888877777778888889999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEC
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      |....++ ++++|.|..++++.+
T Consensus       484 Fg~~aq~-l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  484 FGEHAQY-LASTSMDAILRLYAL  505 (506)
T ss_pred             ecccceE-EeeccchhheEEeec
Confidence            9999885 999999999888764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=3.4e-26  Score=200.62  Aligned_cols=289  Identities=14%  Similarity=0.224  Sum_probs=217.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecC------CC-----------CCCCeeeeeccccCCCcceeeee
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES------DG-----------GDPNLYVHHHIIIPAFPLCMAWL  199 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~------~~-----------~~~~l~~~~~~~~~~~~~~~~~~  199 (502)
                      .|...+.+.+|+|+|.++|+|+.+-   +++|...+..      ..           -...||-|-+.+     .++.  
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~---SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~dev-----n~l~--  179 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADA---SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEV-----NDLD--  179 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcc---eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcc-----ccee--
Confidence            5889999999999999999999886   5566555410      00           011233333222     3443  


Q ss_pred             cCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748          200 DCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       200 ~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                           |+|....|++|+.|++|++||+.....                         +..+.......+|.+|+|+|. +
T Consensus       180 -----FHPre~ILiS~srD~tvKlFDfsK~sa-------------------------KrA~K~~qd~~~vrsiSfHPs-G  228 (430)
T KOG0640|consen  180 -----FHPRETILISGSRDNTVKLFDFSKTSA-------------------------KRAFKVFQDTEPVRSISFHPS-G  228 (430)
T ss_pred             -----ecchhheEEeccCCCeEEEEecccHHH-------------------------HHHHHHhhccceeeeEeecCC-C
Confidence                 489999999999999999999963211                         111112235678999999999 5


Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEee---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-ee-cCC
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV-AAD  354 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~-~~~  354 (502)
                      .+|+.|..-.++++||+++-+|...-   ..|++.|+++.+++.+ ++.++|+.||.|++||--+.+++.... .| ...
T Consensus       229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse  307 (430)
T KOG0640|consen  229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE  307 (430)
T ss_pred             ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence            59999999999999999999887654   4699999999999999 999999999999999988888765433 33 456


Q ss_pred             eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-----CCCeeEEEEcCCCCCEEEEEe-CCCc
Q 010748          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGS-TDKM  428 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~t~s-~dg~  428 (502)
                      |.+..|..++. ++++++.|..+++|.+.++         .++....+-     ..--+...|+... .+++.-. ..+.
T Consensus       308 vcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~---------R~l~~YtGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~s  376 (430)
T KOG0640|consen  308 VCSAVFTKNGK-YILSSGKDSTVKLWEISTG---------RMLKEYTGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNS  376 (430)
T ss_pred             eeeEEEccCCe-EEeecCCcceeeeeeecCC---------ceEEEEecCCcccchhhhhhhhhcCcc-ceEEccccccCc
Confidence            99999999765 8999999999999999987         555555432     1122344566654 4554433 3577


Q ss_pred             EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      +.-||.++.....+.. .+|.+.+..+.-+|.++ .+++|+.|-.+++|--+
T Consensus       377 lcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  377 LCSWDARTADRVALLS-LGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR  426 (430)
T ss_pred             eeeccccchhhhhhcc-cCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence            9999999987544443 47999999999999999 59999999999999643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.3e-26  Score=219.69  Aligned_cols=246  Identities=21%  Similarity=0.366  Sum_probs=204.5

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +.+.|.++.|+|+|.+|++|...+   .+.||....... ...+..+|...    .-|++|         ++..+.+|+.
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g---~v~iwD~~~~k~-~~~~~~~h~~r----vg~laW---------~~~~lssGsr  278 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDG---TVQIWDVKEQKK-TRTLRGSHASR----VGSLAW---------NSSVLSSGSR  278 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCC---eEEEEehhhccc-cccccCCcCce----eEEEec---------cCceEEEecC
Confidence            378999999999999999999988   445555444332 23444445333    379999         3889999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      ++.|.++|+...+...                          ..+.+|...|..|+|+++ ..+||+|+.|+.|.|||..
T Consensus       279 ~~~I~~~dvR~~~~~~--------------------------~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  279 DGKILNHDVRISQHVV--------------------------STLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             CCcEEEEEEecchhhh--------------------------hhhhcccceeeeeEECCC-CCeeccCCCccceEeccCC
Confidence            9999999997543221                          136689999999999999 6699999999999999998


Q ss_pred             CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEE-EeCC
Q 010748          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLED  374 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-~~~d  374 (502)
                      ...+...+..|.+.|.+++|+|-...+||+|+  .|+.|++||..++.... .....+.|.+|.|++....++.+ |..+
T Consensus       332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-~vdtgsQVcsL~Wsk~~kEi~sthG~s~  410 (484)
T KOG0305|consen  332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-SVDTGSQVCSLIWSKKYKELLSTHGYSE  410 (484)
T ss_pred             CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-ccccCCceeeEEEcCCCCEEEEecCCCC
Confidence            88899999999999999999999888999975  59999999999877655 55667899999999987544443 4677


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +.|.+|...+.         ..+..+.+|...|..++++|++ ..+++|+.|.++++|++-...
T Consensus       411 n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  411 NQITLWKYPSM---------KLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             CcEEEEecccc---------ceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCCC
Confidence            78999999986         7889999999999999999998 999999999999999987653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.7e-26  Score=208.44  Aligned_cols=250  Identities=18%  Similarity=0.272  Sum_probs=200.2

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      .||++|+|||+++.|.+..||.+...                        ...+..+.+.+|..+|..+.|+|+ ..+|+
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d------------------------~~~kl~~tlvgh~~~V~yi~wSPD-dryLl  285 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYD------------------------VHFKLKKTLVGHSQPVSYIMWSPD-DRYLL  285 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecC------------------------cceeeeeeeecccCceEEEEECCC-CCeEE
Confidence            35999999999999999999997521                        113455667799999999999999 45888


Q ss_pred             EEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          284 SASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       284 sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      +|+.+..+++||+.+|.+.+.+. +|...+++++|.|++ ..+++|+.|+++..||+.....-.........|.+++..+
T Consensus       286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC
Confidence            89999999999999999988874 356889999999999 8899999999999999987654433333345699999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      +|. .+++.+.|..|++|+..+.         .. ..+.....+|+++++|.++ +++++.-.+..+++||+....  .+
T Consensus       365 Dgk-~vl~v~~d~~i~l~~~e~~---------~d-r~lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~--lv  430 (519)
T KOG0293|consen  365 DGK-YVLLVTVDKKIRLYNREAR---------VD-RGLISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENK--LV  430 (519)
T ss_pred             CCc-EEEEEecccceeeechhhh---------hh-hccccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhh--HH
Confidence            987 6777778999999998764         11 2234456789999999998 888888889999999999665  56


Q ss_pred             EEecCCCCc--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748          443 ASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       443 ~~~~~~~~~--v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      ..+.+|...  +..-+|---..-++|+|+.|+.|+||+..+++++..+-+|..
T Consensus       431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~  483 (519)
T KOG0293|consen  431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK  483 (519)
T ss_pred             HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence            666676543  444456544323699999999999999999999988877753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.5e-25  Score=216.03  Aligned_cols=278  Identities=19%  Similarity=0.338  Sum_probs=214.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCC-CCCCEEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR-EKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~la~  214 (502)
                      ..|+..|..+++-+.. .+++++-++   +++||.-  ...   ....+|...-+     ..|+.+.+.+. .++-.|++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~---t~~vw~~--~~~---~~l~~~~~~~~-----~g~i~~~i~y~e~~~~~l~~   76 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDG---TVKVWAK--KGK---QYLETHAFEGP-----KGFIANSICYAESDKGRLVV   76 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCC---ceeeeec--cCc---ccccceecccC-----cceeeccceeccccCcceEe
Confidence            4578888887766555 566676666   3455543  332   22222221110     11111111112 25667999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      |++|..|.+|.+....                           +...+.+|...|.|++...+ . .++|||.|.++++|
T Consensus        77 g~~D~~i~v~~~~~~~---------------------------P~~~LkgH~snVC~ls~~~~-~-~~iSgSWD~TakvW  127 (745)
T KOG0301|consen   77 GGMDTTIIVFKLSQAE---------------------------PLYTLKGHKSNVCSLSIGED-G-TLISGSWDSTAKVW  127 (745)
T ss_pred             ecccceEEEEecCCCC---------------------------chhhhhccccceeeeecCCc-C-ceEecccccceEEe
Confidence            9999999999987533                           33456799999999998777 3 38999999999999


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d  374 (502)
                      -+  +++...+.+|+..|+++..-|.+  .++||+.|.+|++|.-  ++....+.+|...|+.+++-+++  .|++++.|
T Consensus       128 ~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~flScsND  199 (745)
T KOG0301|consen  128 RI--GELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSND  199 (745)
T ss_pred             cc--hhhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--CeEeecCC
Confidence            74  56777799999999999999987  7999999999999987  44555567899999999999865  49999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      |.|++|++. +         ..+..+.+|+..|.+++..+++ ..+++++.|++++||+..    .+...+......|++
T Consensus       200 g~Ir~w~~~-g---------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWs  264 (745)
T KOG0301|consen  200 GSIRLWDLD-G---------EVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWS  264 (745)
T ss_pred             ceEEEEecc-C---------ceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC----ceEEEEecCccceEE
Confidence            999999994 3         7899999999999999977766 899999999999999976    356666655668999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          455 VAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       455 ~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +.+-++|.  +++|++||.||||....
T Consensus       265 a~~L~NgD--Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  265 AKVLLNGD--IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEeeCCC--EEEeccCceEEEEEecc
Confidence            99999997  88899999999999874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=7.8e-27  Score=212.09  Aligned_cols=245  Identities=20%  Similarity=0.281  Sum_probs=198.9

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ++...|++|+.|..|.+|++....                         ......+.+..++|+++.|.++ +..+++++
T Consensus       185 ~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------~~~~~tLaGs~g~it~~d~d~~-~~~~iAas  238 (459)
T KOG0288|consen  185 RNSDTLATGGSDRIIKLWNVLGEK-------------------------SELISTLAGSLGNITSIDFDSD-NKHVIAAS  238 (459)
T ss_pred             cCcchhhhcchhhhhhhhhcccch-------------------------hhhhhhhhccCCCcceeeecCC-CceEEeec
Confidence            667899999999999999986422                         2233455677789999999999 56788889


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      .|+.+++|++...+...++.+|+++|+++.|.... ..+++|+.|.+|++||+....+.... -..+.+..++.++   .
T Consensus       239 ~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S~cnDI~~~~---~  313 (459)
T KOG0288|consen  239 NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV-LPGSQCNDIVCSI---S  313 (459)
T ss_pred             CCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc-cccccccceEecc---e
Confidence            99999999999999999999999999999998877 55999999999999999986665432 2334455555553   3


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      .+++|..|+.|++||.|+.         .++.....+. .|+++..++++ ..|++++.|.++.+.|+++......+.-.
T Consensus       314 ~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA~  382 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSAE  382 (459)
T ss_pred             eeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeecc
Confidence            6899999999999999987         6677777665 89999999998 77888899999999999998754444333


Q ss_pred             CC--CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          447 PK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       447 ~~--~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      +.  ....+.+.|||++.| +++||.||.|+||++.++++....-.....
T Consensus       383 g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~  431 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSLSTSN  431 (459)
T ss_pred             ccccccccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence            22  234789999999997 889999999999999999987665544433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=1.1e-26  Score=203.75  Aligned_cols=218  Identities=24%  Similarity=0.395  Sum_probs=182.3

Q ss_pred             cccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC------------C------eeeEeeccCCCCeEEEEEcCCCC
Q 010748          261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA------------G------KCNLTLEHHTDKVQAVAWNHHSP  322 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~------------~------~~~~~~~~h~~~v~~l~~~~~~~  322 (502)
                      .+..|+.++.+.+|+|+ +.++|+||.|..|+|.|++.            +      -.++++..|...|+++.|+|.. 
T Consensus       107 ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-  184 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-  184 (430)
T ss_pred             EEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence            45689999999999999 56999999999999999861            1      2467888899999999999999 


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCcc--ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE
Q 010748          323 QILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       323 ~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  400 (502)
                      .+|++|+.|++|++||+.......  ..+....+|.+++|+|.|. ++++|+.-..+++||+.+.+..      .+...-
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcf------vsanPd  257 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCF------VSANPD  257 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEe------eecCcc
Confidence            999999999999999998755432  2334567899999999876 8999999999999999987321      111223


Q ss_pred             eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-CC-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       401 ~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-~~-~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      ..|++.|+++.+++.+ ++.+|++.||.|++||--+++  |+.++. .| ...|.+..|..+++| +.++|.|..+++|.
T Consensus       258 ~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKY-ILSSGKDSTVKLWE  333 (430)
T ss_pred             cccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeE-EeecCCcceeeeee
Confidence            5689999999999998 999999999999999988877  555442 34 456999999999998 67788999999999


Q ss_pred             CCCCccccccccC
Q 010748          479 TLSDAGISNRFSK  491 (502)
Q Consensus       479 ~~~~~~~~~~~~~  491 (502)
                      +.++.++.+..+.
T Consensus       334 i~t~R~l~~YtGA  346 (430)
T KOG0640|consen  334 ISTGRMLKEYTGA  346 (430)
T ss_pred             ecCCceEEEEecC
Confidence            9999999888765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.8e-25  Score=206.05  Aligned_cols=254  Identities=19%  Similarity=0.242  Sum_probs=205.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+..++++++.+|+|.-|++.++....-...-.   .      ..+...........+|...|.+++.+++ +.+||+|
T Consensus       151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~---e------v~k~~~~~~k~~r~~h~keil~~avS~D-gkylatg  220 (479)
T KOG0299|consen  151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD---E------VLKSHGNPLKESRKGHVKEILTLAVSSD-GKYLATG  220 (479)
T ss_pred             eccccceeecCCCcceeeeehhcCcccccccccc---h------hhhhccCCCCcccccccceeEEEEEcCC-CcEEEec
Confidence            7999999999999999999998765431111000   0      0000111111111489999999999999 5699999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      +.|..|.||+..+.+.++.+.+|.+.|.+++|-... +.|++++.|++|++|++.....+..+++|+..|..+....-. 
T Consensus       221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-  298 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-  298 (479)
T ss_pred             CCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-
Confidence            999999999999999999999999999999998766 889999999999999999988888899999999999877644 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~  445 (502)
                      ..+.+|+.|+++++|++..          .....+.+|.+.+-|++|-.+  ..+++|+.+|.|.+|++...+|.++...
T Consensus       299 R~vtVGgrDrT~rlwKi~e----------esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~  366 (479)
T KOG0299|consen  299 RCVTVGGRDRTVRLWKIPE----------ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRL  366 (479)
T ss_pred             ceEEeccccceeEEEeccc----------cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeec
Confidence            4677788999999999953          445567788999999999874  6899999999999999999987665544


Q ss_pred             cCC----------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          446 NPK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       446 ~~~----------~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      ..+          ...|++++..|... |+|+|+.+|.|++|.+..+-.
T Consensus       367 AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  367 AHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             cccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc
Confidence            322          12789999999888 799999999999999998844

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=8.1e-26  Score=209.96  Aligned_cols=288  Identities=17%  Similarity=0.297  Sum_probs=231.5

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      -.|.+-|.++.|+...+.+.+|+..    .++||.+.....+.+  ..+-++..+.--+..      ....|+|+-|++|
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkg----cVKVWdis~pg~k~P--vsqLdcl~rdnyiRS------ckL~pdgrtLivG  483 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKG----CVKVWDISQPGNKSP--VSQLDCLNRDNYIRS------CKLLPDGRTLIVG  483 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCC----eEEEeeccCCCCCCc--cccccccCcccceee------eEecCCCceEEec
Confidence            3577788999999888888888755    478998877654221  122222211111111      1126899999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.-.++.|||+....                         ..++..+....-++.+|+.+|+ .++.++|..||.|.|||
T Consensus       484 GeastlsiWDLAapT-------------------------prikaeltssapaCyALa~spD-akvcFsccsdGnI~vwD  537 (705)
T KOG0639|consen  484 GEASTLSIWDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWD  537 (705)
T ss_pred             cccceeeeeeccCCC-------------------------cchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEE
Confidence            999999999997522                         2222333445567889999999 77999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      +.+...++.|++|++.+.||..+++| ..|-||+.|.+|+.||+|..+... .....+.|.++.++|.+. .+++|..++
T Consensus       538 Lhnq~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-qhdF~SQIfSLg~cP~~d-WlavGMens  614 (705)
T KOG0639|consen  538 LHNQTLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-QHDFSSQIFSLGYCPTGD-WLAVGMENS  614 (705)
T ss_pred             cccceeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-hhhhhhhheecccCCCcc-ceeeecccC
Confidence            99999999999999999999999999 889999999999999999887654 456678899999999876 799999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .+.+.....          ...+.+..|...|.++.|.+.| +++++.+.|+.+..|.+.-+.  .++... -..+|.++
T Consensus       615 ~vevlh~sk----------p~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa--siFqsk-E~SsVlsC  680 (705)
T KOG0639|consen  615 NVEVLHTSK----------PEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA--SIFQSK-ESSSVLSC  680 (705)
T ss_pred             cEEEEecCC----------ccceeecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc--ceeecc-ccCcceee
Confidence            999888774          4567788899999999999998 999999999999999998876  444443 35789999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          456 AFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       456 ~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      .++.+.+| ++||+.+....||.+
T Consensus       681 DIS~ddky-IVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  681 DISFDDKY-IVTGSGDKKATVYEV  703 (705)
T ss_pred             eeccCceE-EEecCCCcceEEEEE
Confidence            99999995 999999988888875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.2e-25  Score=203.78  Aligned_cols=230  Identities=22%  Similarity=0.321  Sum_probs=195.5

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +..+.+++|+.|..+.++|..+                           .+....+.||+..|+.+.++|+ ...+++++
T Consensus       229 ~s~~~ilTGG~d~~av~~d~~s---------------------------~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aS  280 (506)
T KOG0289|consen  229 PSSSKILTGGEDKTAVLFDKPS---------------------------NQILATLKGHTKKITSVKFHKD-LDTVITAS  280 (506)
T ss_pred             CCCCcceecCCCCceEEEecch---------------------------hhhhhhccCcceEEEEEEeccc-hhheeecC
Confidence            4468899999999999999875                           3344467799999999999999 56899999


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--ecCCeeEEEeCCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHA  364 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~  364 (502)
                      .|..|+||......+......|..+|+.+..+|.| .+|++++.||+..+.|++++........  ..-.+++.+|+|+|
T Consensus       281 ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg  359 (506)
T KOG0289|consen  281 ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG  359 (506)
T ss_pred             CcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence            99999999998888888888999999999999999 9999999999999999999887653332  22358999999987


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      - +|.+|+.||.|++||+.+.         ..+..+.+|+++|..++|+.+| .+|++++.|+.|++||++..+....+.
T Consensus       360 L-ifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  360 L-IFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             e-EEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceee
Confidence            5 8999999999999999987         5788899999999999999998 999999999999999999877444444


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .... ..+.++.|.+.|.| |+.+|.+=.|++++
T Consensus       429 l~~~-~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  429 LDEK-KEVNSLSFDQSGTY-LGIAGSDLQVYICK  460 (506)
T ss_pred             cccc-ccceeEEEcCCCCe-EEeecceeEEEEEe
Confidence            4333 37999999999997 66677765555555

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.4e-25  Score=201.79  Aligned_cols=252  Identities=22%  Similarity=0.354  Sum_probs=199.8

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +..++|+-+..|.|+||++...-..     +....      ...+.+..++.+.+.+|...=++|+|||-....|+||..
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~-----l~~~~------~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc  232 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNA-----LSEPG------LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC  232 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhh-----hcCcc------ccccccccCceEEecccCccceeeecccccccccccCcc
Confidence            5677888888999999998632111     10000      012235567788899999999999999964446889988


Q ss_pred             CCcEEEEeCCCCee---eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc--cceEeecCCeeEEEeCC
Q 010748          288 DKQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWDP  362 (502)
Q Consensus       288 dg~v~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~  362 (502)
                      -+.|++|...++.-   ...|.+|+..|-.|+|+|....+|++||.||+|+|||+|.....  .....|.+.|+.+.|+.
T Consensus       233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr  312 (440)
T KOG0302|consen  233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR  312 (440)
T ss_pred             ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC
Confidence            89999999988753   23466799999999999999899999999999999999987432  23457889999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC----
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ----  438 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~----  438 (502)
                      .-+ +|++|+.+|+++|||+|+.+.      .+++..+..|..+|++|.|+|.....|++++.|.+|.+||+.-..    
T Consensus       313 ~~~-lLasG~DdGt~~iwDLR~~~~------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  313 REP-LLASGGDDGTLSIWDLRQFKS------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             Ccc-eeeecCCCceEEEEEhhhccC------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            766 899999999999999998754      578999999999999999999887899999999999999985421    


Q ss_pred             -------------eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          439 -------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       439 -------------~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                                   |.+++...+ ...|--+.|++.-+.+|++.+.+| +.||..
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG-fnVfkt  437 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT  437 (440)
T ss_pred             hccccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence                         123333333 345788999999888888888887 666653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.6e-24  Score=186.05  Aligned_cols=276  Identities=15%  Similarity=0.229  Sum_probs=223.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      ..|...+.+++|+-+|..|++|+.++   ++.||..+..... ....+.|+..+     -.+.|-      .+...+|++
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dk---tv~v~n~e~~r~~~~~~~~gh~~sv-----dql~w~------~~~~d~~at   82 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDK---TVSVWNLERDRFRKELVYRGHTDSV-----DQLCWD------PKHPDLFAT   82 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCC---ceEEEEecchhhhhhhcccCCCcch-----hhheeC------CCCCcceEE
Confidence            45778899999999999999999987   5678877655321 12344566444     355663      456889999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      ++.|.+|++||+....+.....                            .+..=.-+.|+|+ +.+++.++.|..|...
T Consensus        83 as~dk~ir~wd~r~~k~~~~i~----------------------------~~~eni~i~wsp~-g~~~~~~~kdD~it~i  133 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKCTARIE----------------------------TKGENINITWSPD-GEYIAVGNKDDRITFI  133 (313)
T ss_pred             ecCCceEEEEEeccCcEEEEee----------------------------ccCcceEEEEcCC-CCEEEEecCcccEEEE
Confidence            9999999999997654432211                            1222345789999 5599999999999999


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d  374 (502)
                      |.++.+.+...+ ..-.+.-+.|+..+ .+|+.....|.|.|.....-+++.....|+....|+.|+|+|. +|++|+.|
T Consensus       134 d~r~~~~~~~~~-~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsAD  210 (313)
T KOG1407|consen  134 DARTYKIVNEEQ-FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSAD  210 (313)
T ss_pred             Eecccceeehhc-ccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeecccc
Confidence            999988887776 45667888999666 7777777789999999888888887889999999999999876 89999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      ..+.+||+...         .+++.+..+.-+|..++|+.+| ++||+||.|..|-|=++.++.  .+..++ +.++.+.
T Consensus       211 AlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd--~~~eI~-~~~~t~t  277 (313)
T KOG1407|consen  211 ALVSLWDVDEL---------ICERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD--RVWEIP-CEGPTFT  277 (313)
T ss_pred             ceeeccChhHh---------hhheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCC--eEEEee-ccCCcee
Confidence            99999999986         7889999999999999999998 999999999999999999998  455543 6789999


Q ss_pred             EEEcCCCCcEEEEEeCC
Q 010748          455 VAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       455 ~~~spd~~~ll~sg~~d  471 (502)
                      ++|+|..+ |||-++.|
T Consensus       278 VAWHPk~~-LLAyA~dd  293 (313)
T KOG1407|consen  278 VAWHPKRP-LLAYACDD  293 (313)
T ss_pred             EEecCCCc-eeeEEecC
Confidence            99999988 67766655

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1e-25  Score=208.04  Aligned_cols=280  Identities=18%  Similarity=0.261  Sum_probs=216.9

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCC
Q 010748          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE  231 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~  231 (502)
                      .+++++.....  .|.+|.+....      ..+...++|+...|++-       +|.|.||+.|+..|.|++|.+.++..
T Consensus        51 ~yllsaq~~rp--~l~vw~i~k~~------~~~q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lYlWelssG~L  115 (476)
T KOG0646|consen   51 EYLLSAQLKRP--LLHVWEILKKD------QVVQYIVLPGPVHALAS-------SNLGYFLLAGTISGNLYLWELSSGIL  115 (476)
T ss_pred             hheeeecccCc--cccccccCchh------hhhhhcccccceeeeec-------CCCceEEEeecccCcEEEEEeccccH
Confidence            56777765553  45555554332      23466778888888765       68899999999999999999987654


Q ss_pred             cCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC---------CCeee
Q 010748          232 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA---------AGKCN  302 (502)
Q Consensus       232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~---------~~~~~  302 (502)
                      +.                           .+.+|-..|+||.|+.+ +.+|+|||.||.|.+|.+.         +.++.
T Consensus       116 L~---------------------------v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~  167 (476)
T KOG0646|consen  116 LN---------------------------VLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL  167 (476)
T ss_pred             HH---------------------------HHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence            33                           44589999999999999 5699999999999999874         34678


Q ss_pred             EeeccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEE
Q 010748          303 LTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       303 ~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d  381 (502)
                      +.|..|+-+|+.+...+.+ ..+|+|+|.|.++++||+..+.... ....+..+.+++.+|. ...+++|+.+|.|.+.+
T Consensus       168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-ti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-TITFPSSIKAVALDPA-ERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-EEecCCcceeEEEccc-ccEEEecCCcceEEeee
Confidence            8999999999999988763 3689999999999999999886554 5677889999999995 55899999999999998


Q ss_pred             CCCCCCCCC-------CCCCccceEEeccCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcE
Q 010748          382 IRTAKSDPD-------STSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       382 ~~~~~~~~~-------~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      +........       ......+..+.+|..  .|+|++++-+| .+|++|+.||.|+|||+.+.+  ++.++....++|
T Consensus       246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q--~iRtl~~~kgpV  322 (476)
T KOG0646|consen  246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ--CIRTLQTSKGPV  322 (476)
T ss_pred             hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH--HHHHHhhhcccc
Confidence            876542111       112344567778887  99999999998 999999999999999999887  566665567899


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          453 FSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      +.+.+.|-.+-.+..-...-.+-+|++
T Consensus       323 tnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  323 TNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             ceeEeeccccceecccccCccCCchHh
Confidence            999997765533332233334445544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=5.7e-25  Score=189.32  Aligned_cols=226  Identities=18%  Similarity=0.302  Sum_probs=196.9

Q ss_pred             cccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      .+.+|..+++.|.++.+ +.+|++|+.|.++.||-..+|..+.++.+|++.|+|+....+. ..+++|+.|.++++||+.
T Consensus         5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence            35689999999999999 5699999999999999988999999999999999999999888 899999999999999999


Q ss_pred             CCCCccceEeecCCeeEEEeCCCCCCEEEEEe-----CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      +++... .+..+.+|..+.|++.+. ++++++     ..+.|.++|++.......  ...|...+..+...++++-|.|.
T Consensus        83 tGk~la-~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   83 TGKQLA-TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDID--SEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             CCcEEE-EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhc--ccCceEEecCCccceeeeeeccc
Confidence            998776 788899999999999765 555554     346799999996532211  14678889999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      + .+|++|..+|.|..||++++.. .+.....|...|+.++++|+..| +++|+.|.+-++||+.+-+.+++....++..
T Consensus       159 ~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~PvN  235 (327)
T KOG0643|consen  159 G-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPVN  235 (327)
T ss_pred             C-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeeccccc
Confidence            8 9999999999999999999863 56666778889999999999995 9999999999999999999888777665543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=7.8e-25  Score=212.65  Aligned_cols=243  Identities=22%  Similarity=0.353  Sum_probs=210.7

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      |.+...+++|+ .+.|.||+.++..+...+                             -..-+.+..|-|. ..++++|
T Consensus       382 S~d~~~~~Sga-~~SikiWn~~t~kciRTi-----------------------------~~~y~l~~~Fvpg-d~~Iv~G  430 (888)
T KOG0306|consen  382 SSDSILLASGA-GESIKIWNRDTLKCIRTI-----------------------------TCGYILASKFVPG-DRYIVLG  430 (888)
T ss_pred             ecCceeeeecC-CCcEEEEEccCcceeEEe-----------------------------ccccEEEEEecCC-CceEEEe
Confidence            56666666665 579999999887665532                             2247889999998 5699999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC------c------cceEeecC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------S------GFKWAVAA  353 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~------~~~~~~~~  353 (502)
                      ...|.+.+||+.+...+.+++.|.+.|.+++.+|++ ..+++||.|.+|++||..--..      .      ........
T Consensus       431 ~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d  509 (888)
T KOG0306|consen  431 TKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED  509 (888)
T ss_pred             ccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence            999999999999999999999999999999999999 8899999999999999752111      0      12334577


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .|.|+.++|++. +++++--|.+|++|-+.+.         +...++.+|.-||.|+.++|++ .+++|||.|.+|++|-
T Consensus       510 dvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl---------KFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWG  578 (888)
T KOG0306|consen  510 DVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL---------KFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWG  578 (888)
T ss_pred             cEEEEEEcCCCc-EEEEEeccCeEEEEEecce---------eeeeeecccccceeEEeccCCc-CeEEeccCCCceEEec
Confidence            899999999876 8999999999999999987         7788999999999999999998 9999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      +.-+.  |-.++.+|...|.++.|.|... ++.++|.|+.|+-||-...++++.+.+|+..
T Consensus       579 LdFGD--CHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e  636 (888)
T KOG0306|consen  579 LDFGD--CHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE  636 (888)
T ss_pred             cccch--hhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhhhhhheeeccchhe
Confidence            98888  7888899999999999999776 6899999999999999999999988888654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=208.59  Aligned_cols=212  Identities=21%  Similarity=0.260  Sum_probs=182.0

Q ss_pred             ccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748          262 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       262 ~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~  341 (502)
                      +......|.++.|-.+ +.+||+|...|.|+|+|+.+...++.+.+|+.+|..+.|+|++...|++|+.|+.+++||+.+
T Consensus        64 ~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             HHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            3346688999999999 559999999999999998887788899999999999999999989999999999999999998


Q ss_pred             CCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748          342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      ........+|..-|.|.+|+|....++++|+-||.|++||+|..        . ....-..|..+|.++.+-|.| .+++
T Consensus       143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~--------~-~~v~elnhg~pVe~vl~lpsg-s~ia  212 (487)
T KOG0310|consen  143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL--------T-SRVVELNHGCPVESVLALPSG-SLIA  212 (487)
T ss_pred             cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC--------C-ceeEEecCCCceeeEEEcCCC-CEEE
Confidence            87654566889999999999998889999999999999999986        2 333344599999999999987 8888


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +++. ..|+|||+.++.. .+.....|...|+|+.+..++. .|++||-|+.|++||+.+-+.+..
T Consensus       213 sAgG-n~vkVWDl~~G~q-ll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~s  275 (487)
T KOG0310|consen  213 SAGG-NSVKVWDLTTGGQ-LLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVHS  275 (487)
T ss_pred             EcCC-CeEEEEEecCCce-ehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEEe
Confidence            8875 4699999997653 4445555889999999999987 699999999999999877666543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.8e-25  Score=220.81  Aligned_cols=218  Identities=15%  Similarity=0.269  Sum_probs=181.0

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC---------------------------------------------
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA---------------------------------------------  298 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~---------------------------------------------  298 (502)
                      .|.++|+++.|+++ +.+||+|+.||.|+||.+..                                             
T Consensus       265 ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            89999999999999 56999999999999998654                                             


Q ss_pred             ---------------CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748          299 ---------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       299 ---------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  363 (502)
                                     .++++.|.+|.+.|..|.|+.++  +|++++.|.+|+||++....+.. .+.|..-|+||+|+|.
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~-~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLK-VFSHNDFVTCVAFNPV  420 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceee-EEecCCeeEEEEeccc
Confidence                           02234567899999999999876  99999999999999999888776 7899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      ..++|++|+-||.|+||++...          .+.....-..-|++++|.|+| +..+.|+.+|.+++|+....+.....
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~----------~Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDK----------KVVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             CCCcEeecccccceEEeecCcC----------eeEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEee
Confidence            9999999999999999999864          333344445889999999998 99999999999999999988754443


Q ss_pred             EecCC------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCC
Q 010748          444 SRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK  496 (502)
Q Consensus       444 ~~~~~------~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  496 (502)
                      .+..|      ...|+.+.|.|..+-.|++.+.|..|+|||.+....+...-+.+....
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S  548 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS  548 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc
Confidence            33332      237999999987654455668999999999988777766655555443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-24  Score=198.06  Aligned_cols=242  Identities=20%  Similarity=0.266  Sum_probs=188.3

Q ss_pred             CceEEEEEecCCcceeEEEEEecCCCCCCCeee-------------------eeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          151 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-------------------HHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       151 ~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      ||++|+|+.+.   .+.||.++....-.|.+..                   +|.-.    .+.+.|..      .-.+.
T Consensus       192 gNyvAiGtmdp---~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTda----vl~Ls~n~------~~~nV  258 (463)
T KOG0270|consen  192 GNYVAIGTMDP---EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDA----VLALSWNR------NFRNV  258 (463)
T ss_pred             cceEEEeccCc---eeEEeccccccccccceeechhhhhhhhhhcccccccccchHH----HHHHHhcc------cccee
Confidence            78999999987   6799988866653333321                   12111    14566642      24789


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      ||+|+.|.+|.+||++++++..                           .+..|...|.+++|+|..+.+|++||.|++|
T Consensus       259 LaSgsaD~TV~lWD~~~g~p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V  311 (463)
T KOG0270|consen  259 LASGSADKTVKLWDVDTGKPKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTV  311 (463)
T ss_pred             EEecCCCceEEEEEcCCCCcce---------------------------ehhhcCCceeEEEecCCCceEEEeccccceE
Confidence            9999999999999999765433                           3446999999999999989999999999999


Q ss_pred             EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CccceEeecCCeeEEEeCCCCCCEEEE
Q 010748          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~  370 (502)
                      .+.|.+...+....-...+.|-.+.|.|.....+++++.||+|+-+|+|... +......|..+|.++++++..++++++
T Consensus       312 ~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t  391 (463)
T KOG0270|consen  312 ALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST  391 (463)
T ss_pred             EeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence            9999985433322222567899999999999999999999999999999984 455566899999999999999999999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      ++.++.|++|++.....       ..+..-.-.-+...|+++.|+-..+|+.|+..+.++|||+.+..+
T Consensus       392 ~s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ccccceEEEEeecCCCC-------cccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            99999999999976532       112111111234788899998888999999999999999987753

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.9e-24  Score=190.20  Aligned_cols=317  Identities=17%  Similarity=0.262  Sum_probs=240.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|.+.|..++-....+++.+++.+.   +-.||.++.+..  ...|..|...+    .|+.+       ++.+.+++++
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADh---TA~iWs~Esg~C--L~~Y~GH~GSV----Nsikf-------h~s~~L~lTa  208 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADH---TARIWSLESGAC--LATYTGHTGSV----NSIKF-------HNSGLLLLTA  208 (481)
T ss_pred             cccccceeeehhhcCCcceeeccccc---ceeEEeeccccc--eeeecccccce----eeEEe-------ccccceEEEc
Confidence            57899999999999999888888886   558888887663  23355554433    45544       7889999999


Q ss_pred             cCCCcEEEeeCCCC----CCcCcceecCCcchh---h-hhhcc--ccC---CcccccccccCcccceeeEEeccCCCcEE
Q 010748          216 SMEPAIEIWDLDVI----DEVQPHVILGGIDEE---K-KKKKS--KKG---KKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       216 ~~dg~I~iwdl~~~----~~~~~~~~l~~~~~~---~-~~~~~--~~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +.|++..||.....    ....+.-..+.....   . .....  .+.   ....+...+.+|...|.+..|... +..+
T Consensus       209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~  287 (481)
T KOG0300|consen  209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQM  287 (481)
T ss_pred             cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-ccee
Confidence            99999999984321    111111111110000   0 00000  011   123345567899999999999987 5689


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-ccceEeecCCeeEEEeC
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWD  361 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~  361 (502)
                      +++|.|.+..+||++++.++..+.+|....+.++-+|.. +++++++.|.+.++||+|..-. +..+.+|...|+++.|.
T Consensus       288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~  366 (481)
T KOG0300|consen  288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN  366 (481)
T ss_pred             eeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence            999999999999999999999999999999999999998 9999999999999999994332 34566889999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      .+.  .+++|+.|.+|++||+++.        ..++.++. ...+++.++.+..+ ..|+.-..+..|++||+...+...
T Consensus       367 ~dd--~vVSgSDDrTvKvWdLrNM--------RsplATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  367 TDD--RVVSGSDDRTVKVWDLRNM--------RSPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             cCC--ceeecCCCceEEEeeeccc--------cCcceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCcccc
Confidence            854  5999999999999999998        46666665 46778999998855 688888888899999998876422


Q ss_pred             --EEEecCCCCcEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCC
Q 010748          442 --IASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       442 --~~~~~~~~~~v~~~~~spd~~~-ll~sg~~dg~i~vwd~~~~  482 (502)
                        .....+|...|.|++|..+.+. -|.++|.|..+.-|.+...
T Consensus       435 lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  435 LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence              2356788899999999765421 1678899999999998654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=1.5e-25  Score=191.05  Aligned_cols=245  Identities=22%  Similarity=0.346  Sum_probs=194.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      +.|...|....+..+-...|+|..+=   +-+||.--.+..  ..-+.|..++     -.+       +|+.+.++|++|
T Consensus        56 eghkgavw~~~l~~na~~aasaaadf---takvw~a~tgde--lhsf~hkhiv-----k~~-------af~~ds~~lltg  118 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKNATRAASAAADF---TAKVWDAVTGDE--LHSFEHKHIV-----KAV-------AFSQDSNYLLTG  118 (334)
T ss_pred             eccCcceeeeecCchhhhhhhhcccc---hhhhhhhhhhhh--hhhhhhhhee-----eeE-------Eecccchhhhcc
Confidence            56788888888877777777776553   346665544432  1223333322     233       348899999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +++..+||||++..+                          .+...+.+|++.|..+-|... .+.++|.+.|++|++||
T Consensus       119 g~ekllrvfdln~p~--------------------------App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD  171 (334)
T KOG0278|consen  119 GQEKLLRVFDLNRPK--------------------------APPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWD  171 (334)
T ss_pred             chHHHhhhhhccCCC--------------------------CCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEE
Confidence            999999999998532                          222345689999999999887 56788889999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      .++++.++++. ...+|+++..+++| + +++....+.|.+||..+..... ....+..|++.+.+|.. .++++|+.|.
T Consensus       172 ~rTgt~v~sL~-~~s~VtSlEvs~dG-~-ilTia~gssV~Fwdaksf~~lK-s~k~P~nV~SASL~P~k-~~fVaGged~  246 (334)
T KOG0278|consen  172 HRTGTEVQSLE-FNSPVTSLEVSQDG-R-ILTIAYGSSVKFWDAKSFGLLK-SYKMPCNVESASLHPKK-EFFVAGGEDF  246 (334)
T ss_pred             eccCcEEEEEe-cCCCCcceeeccCC-C-EEEEecCceeEEecccccccee-eccCccccccccccCCC-ceEEecCcce
Confidence            99999999997 57889999999999 4 5666778899999999877654 55677889999999976 6899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceE-EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      .++.||..++         .-+-. ..+|.++|.|+.|+|+| .+.++||.||+|+||.+..++.
T Consensus       247 ~~~kfDy~Tg---------eEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  247 KVYKFDYNTG---------EEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EEEEEeccCC---------ceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence            9999999998         33333 48899999999999998 8999999999999999877663

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.8e-24  Score=198.20  Aligned_cols=293  Identities=15%  Similarity=0.229  Sum_probs=224.2

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEecC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~la~g~~  217 (502)
                      ...|++++|||.-.+|++|+.++   .++||-.+....   .  .-+.+.+..+|+..+-      |.|+|. .+++++.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~---~lrifqvDGk~N---~--~lqS~~l~~fPi~~a~------f~p~G~~~i~~s~r  278 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDG---TLRIFQVDGKVN---P--KLQSIHLEKFPIQKAE------FAPNGHSVIFTSGR  278 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCC---cEEEEEecCccC---h--hheeeeeccCccceee------ecCCCceEEEeccc
Confidence            36799999999999999999997   678887776654   2  1222335566654432      278888 9999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc-ccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      ...++.||+.+.....                         ...+.++ ...+.....+++ +++|+..+..|.|.|...
T Consensus       279 rky~ysyDle~ak~~k-------------------------~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLha  332 (514)
T KOG2055|consen  279 RKYLYSYDLETAKVTK-------------------------LKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHA  332 (514)
T ss_pred             ceEEEEeecccccccc-------------------------ccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehh
Confidence            9999999997532211                         1111223 345777888999 669999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCe--eEEEeCCCCCCEEEEEeCC
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV--ESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~~~~~~~d  374 (502)
                      .++..+.+++ -.+.|..++|+.++ ..|++++.+|.|.+||++...+.. .+.-.+.|  ++++.++++. +|++|+..
T Consensus       333 kT~eli~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~-rf~D~G~v~gts~~~S~ng~-ylA~GS~~  408 (514)
T KOG2055|consen  333 KTKELITSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLH-RFVDDGSVHGTSLCISLNGS-YLATGSDS  408 (514)
T ss_pred             hhhhhhheee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEE-EEeecCccceeeeeecCCCc-eEEeccCc
Confidence            9999999987 57899999999998 888888889999999999986554 55555554  5666678766 89999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEE-EecCCCCc
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIA-SRNPKAGA  451 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~-~~~~~~~~  451 (502)
                      |.|.|||..+......   .+|+..+..-...|+++.|+|+. .+||.+|.  ...+|+-.+.+.....-+ ......+.
T Consensus       409 GiVNIYd~~s~~~s~~---PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~  484 (514)
T KOG2055|consen  409 GIVNIYDGNSCFASTN---PKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH  484 (514)
T ss_pred             ceEEEeccchhhccCC---CCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence            9999999765432222   37888888888999999999998 88888875  667999888765411101 11334567


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       452 v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      |+||+|+|.+.| ||.|...|.+.+|.+.
T Consensus       485 vtc~aFSP~sG~-lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  485 VTCMAFSPNSGY-LAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eEEEEecCCCce-EEeecCCCceeeEeec
Confidence            999999999986 9999999999999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=3.6e-24  Score=206.73  Aligned_cols=320  Identities=18%  Similarity=0.259  Sum_probs=220.7

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCCeeeeeccccCCCcceeeeecCCCCCCCC----CCEEEEec
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK----GNFMAVGS  216 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~la~g~  216 (502)
                      .-++.|.|+...|.+..++.   .|.||..+.-.. +.......|    .+-.+.++-++|.+.-++.    ...+.+++
T Consensus       327 ~IA~~Fdet~~klscVYndh---SlYvWDvrD~~kvgk~~s~lyH----S~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS  399 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDH---SLYVWDVRDVNKVGKCSSMLYH----SACIWDVENLPCNVHSPTAACLPRGCFTTCS  399 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCc---eEEEEeccccccccceeeeeec----cceeeeeccccccccCcccccCCccceeEec
Confidence            35788999999999998886   344444433221 111111222    1222444445544432221    23488999


Q ss_pred             CCCcEEEeeCCCCC--CcCcceecCCcch--------hhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          217 MEPAIEIWDLDVID--EVQPHVILGGIDE--------EKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       217 ~dg~I~iwdl~~~~--~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .|++||+|+++...  .+....++.....        .+.......+--.+-..........+.+|+.+|+ +.+||+|.
T Consensus       400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAsGD  478 (1080)
T KOG1408|consen  400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLASGD  478 (1080)
T ss_pred             CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceecccC
Confidence            99999999997621  2211122211000        0000000000001111122344567999999999 56999999


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCC-CccceEeecCCe--------
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADV--------  355 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v--------  355 (502)
                      .-|+++||++........+..|...|.|+.|+.-  +..+|++++.|+.|.+||+...- .....-.|...|        
T Consensus       479 r~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~  558 (1080)
T KOG1408|consen  479 RGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACN  558 (1080)
T ss_pred             ccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeec
Confidence            9999999999999988999999999999999852  33789999999999999986322 122222333333        


Q ss_pred             -----------------------------------------eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 010748          356 -----------------------------------------ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ  394 (502)
Q Consensus       356 -----------------------------------------~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~  394 (502)
                                                               ..++..|..+ ++++++.|..|+||++.++         
T Consensus       559 gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sg---------  628 (1080)
T KOG1408|consen  559 GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESG---------  628 (1080)
T ss_pred             CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEecccc---------
Confidence                                                     3444555433 7899999999999999987         


Q ss_pred             ccceEE---eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748          395 QSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       395 ~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d  471 (502)
                      +.+..+   +.|.+....+...|.| .+|+|.+.|+++.++|+.+++  ++....+|...|+.+.|.+|.++ |++.+.|
T Consensus       629 Kq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCkH-lISvsgD  704 (1080)
T KOG1408|consen  629 KQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCKH-LISVSGD  704 (1080)
T ss_pred             ceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccchh-heeecCC
Confidence            444444   4577888999999998 999999999999999999998  88899999999999999999997 7888999


Q ss_pred             CcEEEEECCCCc
Q 010748          472 GKLEIWDTLSDA  483 (502)
Q Consensus       472 g~i~vwd~~~~~  483 (502)
                      |.|.||.+....
T Consensus       705 gCIFvW~lp~~m  716 (1080)
T KOG1408|consen  705 GCIFVWKLPLTM  716 (1080)
T ss_pred             ceEEEEECchhH
Confidence            999999996543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.7e-23  Score=175.97  Aligned_cols=249  Identities=22%  Similarity=0.342  Sum_probs=191.7

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      +|+|.|.+.|+|+...+++|--....-.+..     ++..       .+..........+.|.+.|+|.+|+|. +.+||
T Consensus        39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~-----~hea-------~~~pp~v~~kr~khhkgsiyc~~ws~~-gelia  105 (350)
T KOG0641|consen   39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRH-----AHEA-------AKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIA  105 (350)
T ss_pred             EecCCCceEEeccCCceEEEEccccccCccc-----cccc-------ccCCCeEEeeeccccCccEEEEEecCc-cCeEE
Confidence            3489999999999999999976543221110     0000       000111112233468999999999999 56999


Q ss_pred             EEecCCcEEEEeCCCCee-----eEeeccCCCCeEEEEEcCC---CCcEEEEEe-CCCcEEEEecCCCCCccceEeecCC
Q 010748          284 SASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHH---SPQILLSGS-FDRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       284 sgs~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~---~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~  354 (502)
                      +||.|.+|++.-++...+     -..|..|.+.|..++|-.+   ++.+|++++ .|..|++-|...++......+|.+.
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence            999999999987764433     2356779999999999643   335676655 4778888899888887778889998


Q ss_pred             eeEE-EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe--cc-----CCCeeEEEEcCCCCCEEEEEeCC
Q 010748          355 VESL-AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AH-----DKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       355 v~~v-~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--~h-----~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      |.++ .|+   ...|++|+.|.+|++||+|-.         .++..+.  .|     ...|.+++..|.| ++|++|..|
T Consensus       186 ilalyswn---~~m~~sgsqdktirfwdlrv~---------~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~d  252 (350)
T KOG0641|consen  186 ILALYSWN---GAMFASGSQDKTIRFWDLRVN---------SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHAD  252 (350)
T ss_pred             EEEEEEec---CcEEEccCCCceEEEEeeecc---------ceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCC
Confidence            8877 465   348999999999999999976         3444432  12     3579999999998 999999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ....+||++.++  ++..+.+|...|.|+.|+|...| |.+++.|..|++-|+..
T Consensus       253 ssc~lydirg~r--~iq~f~phsadir~vrfsp~a~y-llt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  253 SSCMLYDIRGGR--MIQRFHPHSADIRCVRFSPGAHY-LLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CceEEEEeeCCc--eeeeeCCCccceeEEEeCCCceE-EEEecccceEEEeeccc
Confidence            999999999998  68889999999999999999886 88899999999999854

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.2e-24  Score=187.29  Aligned_cols=239  Identities=18%  Similarity=0.249  Sum_probs=184.8

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |+|.++.|++++.||++++|++......                            ....|..++++++|.+.  ..+++
T Consensus        21 f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------------~~~~~~~plL~c~F~d~--~~~~~   70 (323)
T KOG1036|consen   21 FSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------------LKFKHGAPLLDCAFADE--STIVT   70 (323)
T ss_pred             EcCcCCcEEEEeccCcEEEEeccchhhh----------------------------hheecCCceeeeeccCC--ceEEE
Confidence            4788899999999999999999754221                            11258899999999986  47899


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  364 (502)
                      |+.||.|+++|+.++... .+..|..+|+||.+++.. ..+++|+.|++|++||.|...... .......|.++....  
T Consensus        71 G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~g--  145 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVSG--  145 (323)
T ss_pred             eccCceEEEEEecCCcce-eeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccc-ccccCceEEEEeccC--
Confidence            999999999999988654 455699999999999877 789999999999999999744433 334455788887763  


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc-eEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--eeE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSC  441 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--~~~  441 (502)
                       +.|++|+.+..|.+||+|+...        +. ..-..-.-.+.|+++.|++ .-+++++-||.|.+=.+....  ...
T Consensus       146 -~~LvVg~~~r~v~iyDLRn~~~--------~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~sk  215 (323)
T KOG1036|consen  146 -NRLVVGTSDRKVLIYDLRNLDE--------PFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSK  215 (323)
T ss_pred             -CEEEEeecCceEEEEEcccccc--------hhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhh
Confidence             4799999999999999998742        22 1122334568999999976 567788899998875554431  112


Q ss_pred             EEEecCCC---------CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          442 IASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       442 ~~~~~~~~---------~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .+.+..|.         -+|++++|+|-.. .|||||.||.|.+||+.+.+.+.++.
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~  271 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLA  271 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhcc
Confidence            34444442         3799999999977 59999999999999999988876543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=3.6e-24  Score=216.93  Aligned_cols=250  Identities=21%  Similarity=0.306  Sum_probs=201.3

Q ss_pred             CCCCCEEEEec--CCCcEEEeeCCCCCC-cCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          206 REKGNFMAVGS--MEPAIEIWDLDVIDE-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       206 s~~~~~la~g~--~dg~I~iwdl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +|+|..+|+|+  .||.++||+.+.... ...                +.-...........|.+.|+|+.|+|+ +.+|
T Consensus        22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------------~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~l   84 (942)
T KOG0973|consen   22 HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------------KNENLPKHLCTMDDHDGSVNCVRFSPD-GSYL   84 (942)
T ss_pred             cCCceeEecCCccccccceeeccccccchhhh----------------hhcccchhheeeccccCceeEEEECCC-CCeE
Confidence            89999999999  999999999864221 100                001123444566789999999999999 5699


Q ss_pred             EEEecCCcEEEEeCCC------------------CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          283 ASASADKQVKIWDVAA------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      |+||.|+.|.||....                  .+++..+.+|...|..++|+|++ .+|++++.|++|.+|+.++...
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccccee
Confidence            9999999999998762                  24678889999999999999988 9999999999999999999988


Q ss_pred             ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc------CCCeeEEEEcCCCCC
Q 010748          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPN  418 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~  418 (502)
                      ...+..|.+.|..+.|+|-|. +|++-+.|++|++|.+...         .....+..+      ......+.|+|+| .
T Consensus       164 ~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T~f~RlSWSPDG-~  232 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTTFFLRLSWSPDG-H  232 (942)
T ss_pred             eeeeecccccccceEECCccC-eeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcceeeecccCCCc-C
Confidence            888889999999999999876 8999999999999997664         233333322      3457899999999 8


Q ss_pred             EEEEEeC----CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCC------C---------Cc-EEEEEeCCCcEEEEE
Q 010748          419 LLATGST----DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED------S---------PF-VLAIGGSKGKLEIWD  478 (502)
Q Consensus       419 ~l~t~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd------~---------~~-ll~sg~~dg~i~vwd  478 (502)
                      +|++...    -.++.|.+-.+.+  .-..+-+|.+++.++.|+|.      .         .| ++|+|+.|++|.||.
T Consensus       233 ~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  233 HLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             eecchhhccCCcceeEEEecCCce--eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence            8887643    2357888775554  56778899999999999983      1         22 789999999999999


Q ss_pred             CCCCcccc
Q 010748          479 TLSDAGIS  486 (502)
Q Consensus       479 ~~~~~~~~  486 (502)
                      ....+++.
T Consensus       311 T~~~RPl~  318 (942)
T KOG0973|consen  311 TALPRPLF  318 (942)
T ss_pred             cCCCCchh
Confidence            97766654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.3e-23  Score=184.44  Aligned_cols=245  Identities=20%  Similarity=0.311  Sum_probs=187.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEe-ccCCCcEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~s  284 (502)
                      .+.|+.+|+|+.|++|.|||+.....                       ........+.|.+.|..+.| +|..+..+|+
T Consensus        22 D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~   78 (361)
T KOG2445|consen   22 DFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHDGSIWRVVWAHPEFGQVVAT   78 (361)
T ss_pred             cccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecCCcEEEEEecCccccceEEE
Confidence            56799999999999999999854322                       23344455689999999999 5677889999


Q ss_pred             EecCCcEEEEeCC---------CCeeeEeeccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCcc------c-
Q 010748          285 ASADKQVKIWDVA---------AGKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSG------F-  347 (502)
Q Consensus       285 gs~dg~v~vwd~~---------~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~------~-  347 (502)
                      ||.|+++.||.=.         ......++....+.|+.++|.|.. +-.|++++.||.+|||+.-......      . 
T Consensus        79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence            9999999999752         112345666678899999999853 2678999999999999865432111      0 


Q ss_pred             ------eEeecCCeeEEEeCCC--CCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748          348 ------KWAVAADVESLAWDPH--AEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       348 ------~~~~~~~v~~v~~~~~--~~~~~~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                            ...+.....|+.|+|.  ...+|++|+.+     +.++||........     ...+..+..|+.+|+.|+|.|
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeeecc
Confidence                  1124566789999974  23468888766     47888877654210     245667789999999999999


Q ss_pred             CCC---CEEEEEeCCCcEEEEECCCC------------------CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc
Q 010748          415 LVP---NLLATGSTDKMVKLWDLSNN------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK  473 (502)
Q Consensus       415 ~~~---~~l~t~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~  473 (502)
                      +-+   .+||+++.|| |+||.+...                  ....+..+..|.+.|+.+.|+-.|. +|++.|.||.
T Consensus       234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~  311 (361)
T KOG2445|consen  234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGC  311 (361)
T ss_pred             ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCce
Confidence            743   4799999999 999998741                  1234566789999999999999998 7999999999


Q ss_pred             EEEEECC
Q 010748          474 LEIWDTL  480 (502)
Q Consensus       474 i~vwd~~  480 (502)
                      |++|...
T Consensus       312 VRLWkan  318 (361)
T KOG2445|consen  312 VRLWKAN  318 (361)
T ss_pred             eeehhhh
Confidence            9999763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.7e-24  Score=195.70  Aligned_cols=240  Identities=17%  Similarity=0.238  Sum_probs=193.7

Q ss_pred             CCEEEEecC-CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          209 GNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       209 ~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +.|++++.. -+.|.+|.+...+.+..                           ..--.++|.||+-+|. +++|+.|+.
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~~~~~q---------------------------~~v~Pg~v~al~s~n~-G~~l~ag~i  101 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKKDQVVQ---------------------------YIVLPGPVHALASSNL-GYFLLAGTI  101 (476)
T ss_pred             hhheeeecccCccccccccCchhhhhh---------------------------hcccccceeeeecCCC-ceEEEeecc
Confidence            567776654 47899999864332221                           1124578999999999 678888889


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC---------CCCccceEeecCCeeEE
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI---------STHSGFKWAVAADVESL  358 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~v  358 (502)
                      .|.|++|.+.+|..+..+.+|-..|+|+.|+-++ .+|+||+.||.|.+|.+..         .........|.-+|+.+
T Consensus       102 ~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl  180 (476)
T KOG0646|consen  102 SGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDL  180 (476)
T ss_pred             cCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEE
Confidence            9999999999999999999999999999999999 8999999999999998642         22233344677789998


Q ss_pred             EeCCCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          359 AWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       359 ~~~~~~-~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      ...+.+ ...+++++.|.++++||+..+         ..+.++. ....+.+++..|.. ..+++|+.+|.|.+.++...
T Consensus       181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---------~LLlti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  181 QIGSGGTNARLYTASEDRTIKLWDLSLG---------VLLLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKL  249 (476)
T ss_pred             EecCCCccceEEEecCCceEEEEEeccc---------eeeEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeehhcC
Confidence            887642 347999999999999999987         4444444 56789999999987 99999999999999887543


Q ss_pred             C--------------eeEEEEecCCCC--cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          438 Q--------------PSCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       438 ~--------------~~~~~~~~~~~~--~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .              ...+..+.+|.+  .|+|++.+-||. +|++|+.||.|+|||+.+.+++++..
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence            2              123555677887  999999999999 79999999999999999999988766

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=2.5e-24  Score=193.74  Aligned_cols=219  Identities=24%  Similarity=0.380  Sum_probs=181.6

Q ss_pred             ccccccCcccceeeEEeccCC-CcEEEEEecCCcEEEEeCCC----------------CeeeEeeccCCCCeEEEEEcCC
Q 010748          258 IKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAA----------------GKCNLTLEHHTDKVQAVAWNHH  320 (502)
Q Consensus       258 ~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v~vwd~~~----------------~~~~~~~~~h~~~v~~l~~~~~  320 (502)
                      ......+|.+.|+.+...+.+ ..+.|+-+..|.|+||++..                .+++.++.+|...-+.|+|+|-
T Consensus       143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence            334445788888888877763 45777778899999999852                3567888999999999999996


Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCC---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc
Q 010748          321 SPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       321 ~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  397 (502)
                      ....|++|..-+.|++|...++.-   ...+..|...|..++|+|....+|++|+-||+|+|||+|.+..       ++.
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-------~~~  295 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-------KAA  295 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------cce
Confidence            656799999999999999887542   2234568899999999999889999999999999999998743       444


Q ss_pred             eEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       398 ~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~v  476 (502)
                      ....+|.+-|+.|.|+..- .+||+|+.||+++|||++..+. ..+..+..|..+|+++.|+|....+|+++|.|..|.|
T Consensus       296 ~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  296 VSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             eEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            4558999999999999987 4999999999999999987543 3577888999999999999987778999999999999


Q ss_pred             EECCCCcc
Q 010748          477 WDTLSDAG  484 (502)
Q Consensus       477 wd~~~~~~  484 (502)
                      ||+....-
T Consensus       375 WDlsvE~D  382 (440)
T KOG0302|consen  375 WDLSVEAD  382 (440)
T ss_pred             EEeeccCC
Confidence            99975443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.2e-24  Score=189.90  Aligned_cols=246  Identities=22%  Similarity=0.326  Sum_probs=206.1

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ....+.+++.|.+.+||.+.++.++.                           .+.||.+.|+++.|++. +.+++++|.
T Consensus       159 tqpi~gtASADhTA~iWs~Esg~CL~---------------------------~Y~GH~GSVNsikfh~s-~~L~lTaSG  210 (481)
T KOG0300|consen  159 TQPICGTASADHTARIWSLESGACLA---------------------------TYTGHTGSVNSIKFHNS-GLLLLTASG  210 (481)
T ss_pred             CCcceeecccccceeEEeecccccee---------------------------eecccccceeeEEeccc-cceEEEccC
Confidence            35588999999999999999876654                           45599999999999998 679999999


Q ss_pred             CCcEEEEeC------CC----------------------------------CeeeEeeccCCCCeEEEEEcCCCCcEEEE
Q 010748          288 DKQVKIWDV------AA----------------------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       288 dg~v~vwd~------~~----------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  327 (502)
                      |++..||..      ..                                  ..++..+.+|.+.|.+..|-..+ ..+++
T Consensus       211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vT  289 (481)
T KOG0300|consen  211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVT  289 (481)
T ss_pred             CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeee
Confidence            999999962      10                                  02456778999999999999988 89999


Q ss_pred             EeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748          328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      ++.|++..+||+.++.....+.+|....+.++-+|.. .++++++.|.+.++||+|..        ...+..+++|+..|
T Consensus       290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea--------I~sV~VFQGHtdtV  360 (481)
T KOG0300|consen  290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA--------IQSVAVFQGHTDTV  360 (481)
T ss_pred             eeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhh--------cceeeeecccccce
Confidence            9999999999999999999889999999999999964 58999999999999999976        47788999999999


Q ss_pred             eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +++.|..+  ..+++|+.|.+|+|||+++.+. .+.++. ...+++.++.+..++ +||.--.+..|++||+......+-
T Consensus       361 TS~vF~~d--d~vVSgSDDrTvKvWdLrNMRs-plATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaRl  435 (481)
T KOG0300|consen  361 TSVVFNTD--DRVVSGSDDRTVKVWDLRNMRS-PLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLARL  435 (481)
T ss_pred             eEEEEecC--CceeecCCCceEEEeeeccccC-cceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCccccC
Confidence            99999985  5799999999999999998873 344443 346799999999888 688888888999999976655443


Q ss_pred             cccCCCCCC
Q 010748          488 RFSKYSKPK  496 (502)
Q Consensus       488 ~~~~~~~~~  496 (502)
                      .-..+.+++
T Consensus       436 PrtsRqgHr  444 (481)
T KOG0300|consen  436 PRTSRQGHR  444 (481)
T ss_pred             Ccccccccc
Confidence            333444443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=9.6e-24  Score=184.15  Aligned_cols=217  Identities=21%  Similarity=0.327  Sum_probs=173.6

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .|+|+++|+.||.|.|||+......+.....-            +.+....+....+|.-.|.++.|-|-...++.++|.
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~------------k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF  122 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIA------------KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF  122 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhcccee------------heeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence            59999999999999999997644322111110            111111222345899999999999987779999999


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      |.+++|||.++.+....|+ ..+.|.+-+|+|-..  .++++|..+-.|++.|+.++.....+.+|...|.++.|+|...
T Consensus       123 DhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e  201 (397)
T KOG4283|consen  123 DHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE  201 (397)
T ss_pred             cceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce
Confidence            9999999999999888887 477899999988542  5788888899999999999999998999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCC------CCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSD------PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ..+++|+.||.|++||+|.....      .+....+.+..-.+|.+.|.+++|+.++ .++++++.|..+++|+..+++
T Consensus       202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCc
Confidence            99999999999999999986321      1111122333456789999999999998 899999999999999987764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1.9e-23  Score=205.33  Aligned_cols=325  Identities=15%  Similarity=0.234  Sum_probs=244.1

Q ss_pred             CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC
Q 010748          128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~  207 (502)
                      -+.+......|.+.|....|.|...+|++++.+.   ++++|+++...+....|..  .....+.|+|+.+.      ..
T Consensus       277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn---Slk~~vfD~~dg~pR~LR~--R~GHs~Pp~~irfy------~~  345 (910)
T KOG1539|consen  277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADN---SLKVWVFDSGDGVPRLLRS--RGGHSAPPSCIRFY------GS  345 (910)
T ss_pred             CeeeeeeeccccCCcccceecCCCceEeeccCCC---ceeEEEeeCCCCcchheee--ccCCCCCchheeee------cc
Confidence            3444444556889999999999999999999886   8999999976653222221  12235667999886      45


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCccee-------------------------cCCcchhhhhh-------------c
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVI-------------------------LGGIDEEKKKK-------------K  249 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~-------------------------l~~~~~~~~~~-------------~  249 (502)
                      +|.++.+++.|++.+.+++.....-+....                         +.......+.+             .
T Consensus       346 ~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~  425 (910)
T KOG1539|consen  346 QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY  425 (910)
T ss_pred             CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE
Confidence            799999999999999988743211111111                         00000000000             0


Q ss_pred             cccCCcccc-ccc-----ccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee---ccCCCCeEEEEEcCC
Q 010748          250 SKKGKKSSI-KYK-----KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHH  320 (502)
Q Consensus       250 ~~~~~~~~~-~~~-----~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~  320 (502)
                      ...-+++.. .+.     ++.-...+++++.++. +++.+.|+..|+|-+|++++|-...+|   ..|.++|++++....
T Consensus       426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~  504 (910)
T KOG1539|consen  426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT  504 (910)
T ss_pred             EEeccCcccccEEecCccccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence            000001111 111     1112367899999998 679999999999999999999988888   589999999999988


Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE
Q 010748          321 SPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       321 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  400 (502)
                      + +.+++++.+|.+.+||........ .+.....+.++..+.... +++++..+-.|+++|+.+.         +.++.+
T Consensus       505 n-~~~vsa~~~Gilkfw~f~~k~l~~-~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~---------kvvR~f  572 (910)
T KOG1539|consen  505 N-RLLVSAGADGILKFWDFKKKVLKK-SLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR---------KVVREF  572 (910)
T ss_pred             C-ceEEEccCcceEEEEecCCcceee-eeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh---------hhhHHh
Confidence            8 899999999999999998876433 567788889998888654 7889999999999999986         788999


Q ss_pred             eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-CcEEEEEC
Q 010748          401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDT  479 (502)
Q Consensus       401 ~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-g~i~vwd~  479 (502)
                      .+|...|+.++|||+| ++|++++.|++|++||+.++..  +-.+ .-..+++++.|+|+|.| |||...| ..|++|--
T Consensus       573 ~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~l--ID~~-~vd~~~~sls~SPngD~-LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  573 WGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTL--IDGL-LVDSPCTSLSFSPNGDF-LATVHVDQNGIYLWSN  647 (910)
T ss_pred             hccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcce--eeeE-ecCCcceeeEECCCCCE-EEEEEecCceEEEEEc
Confidence            9999999999999998 9999999999999999999983  3332 23478999999999996 8888888 67999964


Q ss_pred             CC
Q 010748          480 LS  481 (502)
Q Consensus       480 ~~  481 (502)
                      .+
T Consensus       648 ks  649 (910)
T KOG1539|consen  648 KS  649 (910)
T ss_pred             hh
Confidence            33

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=5.2e-24  Score=185.77  Aligned_cols=220  Identities=23%  Similarity=0.388  Sum_probs=184.3

Q ss_pred             cCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe------------eeE---eeccCCCCeEEEEEcCCCCcEEEE
Q 010748          263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK------------CNL---TLEHHTDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~------------~~~---~~~~h~~~v~~l~~~~~~~~~l~s  327 (502)
                      ..|.+.|++|...+.-+.++++|++||.|.|||+++..            |+.   .-.+|.-.|.++.|-|-..-+|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46899999999999878899999999999999997532            211   114688899999999988789999


Q ss_pred             EeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC--CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC
Q 010748          328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK  405 (502)
Q Consensus       328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~  405 (502)
                      ++.|.++++||..+.+... .+..++.|.+-+|+|-.  ..++++|..+-.|++.|+.++         .....+.+|..
T Consensus       120 sSFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr~  189 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHRD  189 (397)
T ss_pred             ccccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeeccccC
Confidence            9999999999999876544 66778889988998853  347888899999999999997         78899999999


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC-------------eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC
Q 010748          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg  472 (502)
                      .|.++.|+|.....|+||+.||.|++||++...             +..+.....|.+.|+.++|+.++.+ +++.+.|.
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~  268 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDD  268 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCcc
Confidence            999999999988899999999999999997531             1122335578899999999999997 88888999


Q ss_pred             cEEEEECCCCccccccccCCC
Q 010748          473 KLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       473 ~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      .+++|+..+|....+.++...
T Consensus       269 r~r~wn~~~G~ntl~~~g~~~  289 (397)
T KOG4283|consen  269 RIRVWNMESGRNTLREFGPII  289 (397)
T ss_pred             ceEEeecccCccccccccccc
Confidence            999999999987766665543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=3.2e-22  Score=191.34  Aligned_cols=278  Identities=13%  Similarity=0.105  Sum_probs=185.6

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCCCCC
Q 010748          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID  230 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~~~~  230 (502)
                      +++++++.++     .|++|+.........+.++     .-+.++.|       +|+++.+ ++++.++.|++||+.++.
T Consensus         2 ~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~-----~~~~~l~~-------~~dg~~l~~~~~~~~~v~~~d~~~~~   64 (300)
T TIGR03866         2 KAYVSNEKDN-----TISVIDTATLEVTRTFPVG-----QRPRGITL-------SKDGKLLYVCASDSDTIQVIDLATGE   64 (300)
T ss_pred             cEEEEecCCC-----EEEEEECCCCceEEEEECC-----CCCCceEE-------CCCCCEEEEEECCCCeEEEEECCCCc
Confidence            4667777666     4444554333111111211     12345555       7888876 567788999999987543


Q ss_pred             CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCC
Q 010748          231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD  310 (502)
Q Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~  310 (502)
                      ...                           .+..+ ..+..++|+|++..++++++.++.|++||+.+++.+..+.. ..
T Consensus        65 ~~~---------------------------~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~  115 (300)
T TIGR03866        65 VIG---------------------------TLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GV  115 (300)
T ss_pred             EEE---------------------------eccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CC
Confidence            211                           11122 22467899999654555667789999999999888877763 34


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCC-cEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 010748          311 KVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  389 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~  389 (502)
                      .+.+++|+|++ .++++++.++ .+.+||.++..... .......+.+++|+|++..+++++..++.|++||+.+.    
T Consensus       116 ~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~----  189 (300)
T TIGR03866       116 EPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVD-NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR----  189 (300)
T ss_pred             CcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEE-EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc----
Confidence            56889999999 7787777765 56778987765433 22334556789999987754455567999999999876    


Q ss_pred             CCCCCccceEEecc-----C--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC
Q 010748          390 DSTSQQSSFTLHAH-----D--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       390 ~~~~~~~~~~~~~h-----~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                           ..+..+..+     .  .....++|+|++..++++.+.++.|.+||+.+++...  .. .+...+.+++|+|++.
T Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--~~-~~~~~~~~~~~~~~g~  261 (300)
T TIGR03866       190 -----KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--YL-LVGQRVWQLAFTPDEK  261 (300)
T ss_pred             -----eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE--EE-EeCCCcceEEECCCCC
Confidence                 333332211     1  1235688999984444555667789999998876432  22 2335789999999999


Q ss_pred             cEEEEEeCCCcEEEEECCCCccccccc
Q 010748          463 FVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       463 ~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +++++++.+|.|+|||+.+++.+.+..
T Consensus       262 ~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       262 YLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            644445678999999999999877664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=9.9e-23  Score=200.40  Aligned_cols=296  Identities=17%  Similarity=0.270  Sum_probs=220.3

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEec
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~la~g~  216 (502)
                      +...|+++.-+|--..+|+|..+|     +|.+++...+.. .+...|+   -+..+.+.+       ..||+ .||+|+
T Consensus       201 ~~s~IT~ieqsPaLDVVaiG~~~G-----~ViifNlK~dki-l~sFk~d---~g~VtslSF-------rtDG~p~las~~  264 (910)
T KOG1539|consen  201 FFSRITAIEQSPALDVVAIGLENG-----TVIIFNLKFDKI-LMSFKQD---WGRVTSLSF-------RTDGNPLLASGR  264 (910)
T ss_pred             cccceeEeccCCcceEEEEeccCc-----eEEEEEcccCcE-EEEEEcc---ccceeEEEe-------ccCCCeeEEecc
Confidence            457899999999999999999998     666666655521 1112232   122234433       55665 567777


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      ..|.+.+||++..                          +........|.+.|..+.|.|. ..+|++++.|+.+++|=.
T Consensus       265 ~~G~m~~wDLe~k--------------------------kl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vf  317 (910)
T KOG1539|consen  265 SNGDMAFWDLEKK--------------------------KLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVF  317 (910)
T ss_pred             CCceEEEEEcCCC--------------------------eeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEe
Confidence            8899999999731                          2222334479999999999998 779999999999999865


Q ss_pred             CCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC--------------------------------
Q 010748          297 AAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--------------------------------  340 (502)
Q Consensus       297 ~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~--------------------------------  340 (502)
                      .++    +.++.-.+|+.+..|+.|.-....++++++.|++++.+++.                                
T Consensus       318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence            543    45666689999999999985555889999998877776643                                


Q ss_pred             ---------------------------------CCCCccceEeec------CCeeEEEeCCCCCCEEEEEeCCCcEEEEE
Q 010748          341 ---------------------------------ISTHSGFKWAVA------ADVESLAWDPHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       341 ---------------------------------~~~~~~~~~~~~------~~v~~v~~~~~~~~~~~~~~~dg~v~i~d  381 (502)
                                                       ....-.....+.      ..+++++.++-| ++.+.|+..|.|-+|+
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fN  476 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFN  476 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEE
Confidence                                             111101111111      346778888755 5899999999999999


Q ss_pred             CCCCCCCCCCCCCccceEE---eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------------------
Q 010748          382 IRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------------------  439 (502)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-------------------  439 (502)
                      ++++         ....++   .+|.++|++++....+ +.+++++.+|.+++||+....+                   
T Consensus       477 mQSG---------i~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s  546 (910)
T KOG1539|consen  477 MQSG---------IHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS  546 (910)
T ss_pred             cccC---------eeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence            9987         333344   6899999999999876 8999999999999999976531                   


Q ss_pred             --------------------eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          440 --------------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       440 --------------------~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                                          ..+..+.+|.+.|+.++|||||+| |++++.|++|++||+.++.++-..
T Consensus       547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccCcceeeeE
Confidence                                023344579999999999999997 888999999999999999987544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=9.7e-24  Score=202.12  Aligned_cols=282  Identities=18%  Similarity=0.322  Sum_probs=217.4

Q ss_pred             ccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCC----eeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748          144 DMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPN----LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       144 ~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d  218 (502)
                      +++.+ |.+++|.+|+.++   .|++|...........    -..||..-+..+.+|           .+++.|++++.|
T Consensus        29 ~Lq~da~~~ryLfTgGRDg---~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~-----------~~~~tlIS~SsD   94 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDG---IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC-----------GNGKTLISASSD   94 (735)
T ss_pred             hccccCCCCceEEecCCCc---eEEEeccccccCCcccchhhhhhhhHhHHhhHHhh-----------cCCCceEEecCC
Confidence            45555 5677899999887   6788877655442111    112332222222222           468899999999


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEe-ccCCCcEEEEEecCCcEEEEeCC
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      -+|++|+.....                         ......+..|.+-|.||+. -++ ..++|||+-|+.|.|||++
T Consensus        95 tTVK~W~~~~~~-------------------------~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin  148 (735)
T KOG0308|consen   95 TTVKVWNAHKDN-------------------------TFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDIN  148 (735)
T ss_pred             ceEEEeecccCc-------------------------chhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEcc
Confidence            999999987532                         1223345579999999999 555 6799999999999999999


Q ss_pred             CC--eeeE--------eec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          298 AG--KCNL--------TLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       298 ~~--~~~~--------~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      ++  +.+.        .+. ++...|++++.++.+ ..|++|+..+.+++||.++.+.+..+.+|...|.++..+++|. 
T Consensus       149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt-  226 (735)
T KOG0308|consen  149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT-  226 (735)
T ss_pred             CcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC-
Confidence            77  2222        233 788899999999999 8999999999999999999998888889999999999999876 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEe
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASR  445 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~  445 (502)
                      .+++++.||+|++||+...         .++.++..|...|+++..+|.- ..+++|+.||.|..=|+++... ..+.. 
T Consensus       227 ~~ls~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick-  295 (735)
T KOG0308|consen  227 RLLSASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICK-  295 (735)
T ss_pred             eEeecCCCceEEeeecccc---------ceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeec-
Confidence            7999999999999999986         8899999999999999999987 8999999999999999998542 22222 


Q ss_pred             cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                        ...+|..+..+..... +-+++.|+.|+-|...-
T Consensus       296 --~daPv~~l~~~~~~~~-~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  296 --EDAPVLKLHLHEHDNS-VWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             --CCCchhhhhhccccCC-ceeeeccccceecCCcc
Confidence              2356767777643332 34567888898887654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.7e-23  Score=184.29  Aligned_cols=247  Identities=17%  Similarity=0.261  Sum_probs=190.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++.|.+||+|+.+|.|.|||+.+                           ..+...+.+|..+|++|+|+++| .+|+|+
T Consensus        32 s~~G~~lAvGc~nG~vvI~D~~T---------------------------~~iar~lsaH~~pi~sl~WS~dg-r~Llts   83 (405)
T KOG1273|consen   32 SRWGDYLAVGCANGRVVIYDFDT---------------------------FRIARMLSAHVRPITSLCWSRDG-RKLLTS   83 (405)
T ss_pred             ccCcceeeeeccCCcEEEEEccc---------------------------cchhhhhhccccceeEEEecCCC-CEeeee
Confidence            78899999999999999999986                           23444667899999999999995 599999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee----cCCeeEEEeC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV----AADVESLAWD  361 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~  361 (502)
                      |.|..|++||+..|.+++.+. ..++|+.+.|+|...+.+++.-.+..-.+-++..+.........    .....+..|+
T Consensus        84 S~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd  162 (405)
T KOG1273|consen   84 SRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD  162 (405)
T ss_pred             cCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc
Confidence            999999999999999999987 68899999999988777777766666666666653332211111    1123344688


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC---
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN---  437 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~---  437 (502)
                      +.|. ++++|+..|.+.+++..+.         .++..+.... ..|..+.++..| .+|++-+.|..||.|+++.-   
T Consensus       163 r~g~-yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  163 RRGK-YIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             CCCC-EEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhccc
Confidence            8765 8999999999999999987         5666665555 788999999988 99999999999999998631   


Q ss_pred             ----CeeEEEEec--CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          438 ----QPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       438 ----~~~~~~~~~--~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                          .+.....+.  -....-.+++|+.+|.|++|+...-..++||.-..|.+++-+.+..
T Consensus       232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence                111111111  1123346889999999877766666789999999999887665554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.92  E-value=1.4e-22  Score=176.71  Aligned_cols=300  Identities=22%  Similarity=0.329  Sum_probs=218.4

Q ss_pred             cccccccc--CC-CceEEEEEecCC-cceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          141 DLEDMTIN--PN-DAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       141 ~v~~~~~~--p~-~~~l~~~~~~~~-~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .+.++.|+  |+ .-.||.|+...+ ...++|..++....   .+........+-.++.+.|++-..+..  ..+||+.+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~---e~~~~a~fd~~YP~tK~~wiPd~~g~~--pdlLATs~  120 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG---ELVEDANFDHPYPVTKLMWIPDSKGVY--PDLLATSS  120 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC---ceeccCCCCCCCCccceEecCCccccC--cchhhccc
Confidence            34566666  33 446777775443 23566666665544   444333345566678888875432222  35677765


Q ss_pred             CCCcEEEeeCCCCC-CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          217 MEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       217 ~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                        ..+|+|.+...+ .+.+...|..                   ..-..+..++++..|+.-..++|.++|-|-+..|||
T Consensus       121 --D~LRlWri~~ee~~~~~~~~L~~-------------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWd  179 (364)
T KOG0290|consen  121 --DFLRLWRIGDEESRVELQSVLNN-------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWD  179 (364)
T ss_pred             --CeEEEEeccCcCCceehhhhhcc-------------------CcccccCCcccccccccCCcceeEeecccCeEEEEE
Confidence              689999987422 2222222211                   012246789999999998889999999999999999


Q ss_pred             CCCCe---eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee---cCCeeEEEeCCCCCCEEE
Q 010748          296 VAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFV  369 (502)
Q Consensus       296 ~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~  369 (502)
                      ++++.   ....+-.|...|..++|...+.++|++.+.||.||+||+|...........   ..+...++|++...++++
T Consensus       180 ie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymA  259 (364)
T KOG0290|consen  180 IETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMA  259 (364)
T ss_pred             EeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHh
Confidence            99873   356677899999999999988899999999999999999988776655533   457889999999888888


Q ss_pred             EEeC-CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----eEEEE
Q 010748          370 VSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----SCIAS  444 (502)
Q Consensus       370 ~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----~~~~~  444 (502)
                      +-.. ...|.+.|+|..        ..++..+..|.+.|++++|.|..+..|+|++.|.++.+||+...-.    ..+..
T Consensus       260 Tf~~dS~~V~iLDiR~P--------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila  331 (364)
T KOG0290|consen  260 TFAMDSNKVVILDIRVP--------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA  331 (364)
T ss_pred             hhhcCCceEEEEEecCC--------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence            7554 457999999998        5889999999999999999999989999999999999999976421    11222


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~v  476 (502)
                      .. ..+.|..+.|++..+-.|+.+..+ ++.+
T Consensus       332 y~-a~~EVNqi~Ws~~~~Dwiai~~~k-klei  361 (364)
T KOG0290|consen  332 YT-AGGEVNQIQWSSSQPDWIAICFGK-KLEI  361 (364)
T ss_pred             hh-ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence            22 357799999997665557765543 4444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=4.3e-23  Score=190.25  Aligned_cols=267  Identities=17%  Similarity=0.241  Sum_probs=204.1

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccccee
Q 010748          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  270 (502)
Q Consensus       191 ~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  270 (502)
                      ...+|++|+++     .+-+++|+|...|.|-+||+.+.+..                       ......+..|..+|.
T Consensus       187 ~Rit~l~fHPt-----~~~~lva~GdK~G~VG~Wn~~~~~~d-----------------------~d~v~~f~~hs~~Vs  238 (498)
T KOG4328|consen  187 RRITSLAFHPT-----ENRKLVAVGDKGGQVGLWNFGTQEKD-----------------------KDGVYLFTPHSGPVS  238 (498)
T ss_pred             cceEEEEeccc-----CcceEEEEccCCCcEEEEecCCCCCc-----------------------cCceEEeccCCcccc
Confidence            33478888543     23579999999999999999633222                       233445668999999


Q ss_pred             eEEeccCCCcEEEEEecCCcEEEEeCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc-
Q 010748          271 GLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-  347 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-  347 (502)
                      +|.|+|.....+++.|.||+|++-|++.+..  +.++......+.++.|+... ..++.+..=|...+||+|+...... 
T Consensus       239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~  317 (498)
T KOG4328|consen  239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYEN  317 (498)
T ss_pred             ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchh
Confidence            9999999888999999999999999987643  33333355677888998888 5566666667999999999876433 


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      ..-|...|.+++++|..+.++++++.|++++|||+|......     .++.....|...|.+..|||.+.. |+|.+.|.
T Consensus       318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~  391 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDN  391 (498)
T ss_pred             hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEeeccCC
Confidence            335667999999999999999999999999999999874311     145666789999999999999845 99999999


Q ss_pred             cEEEEECC----CCCeeEEEEecCCC---CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748          428 MVKLWDLS----NNQPSCIASRNPKA---GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       428 ~i~vwd~~----~~~~~~~~~~~~~~---~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      .|+|||..    .-.+.+........   -......|.|+.. ++++|..-..|-|+|-..++.+..+.....
T Consensus       392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~  463 (498)
T KOG4328|consen  392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPES  463 (498)
T ss_pred             ceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence            99999984    23333333322211   1356789999988 689999999999999998887776554443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=3.5e-23  Score=192.32  Aligned_cols=282  Identities=20%  Similarity=0.267  Sum_probs=206.2

Q ss_pred             eEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec--CCCcEEEeeCCCCC
Q 010748          153 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--MEPAIEIWDLDVID  230 (502)
Q Consensus       153 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~--~dg~I~iwdl~~~~  230 (502)
                      +.++.+.+    .+++|.+.....  ..-|.||.....  ...+.|       +. .++|++++  .|..|++|.-+...
T Consensus         5 l~~aS~gd----~~kl~D~s~~~~--~~~~~~~t~~pg--~~s~~w-------~~-~n~lvvas~~gdk~~~~~~K~g~~   68 (673)
T KOG4378|consen    5 LHVASTGD----KTKLSDFSDLET--KSEYVHQTAEPG--DFSFNW-------QR-RNFLVVASMAGDKVMRIKEKDGKT   68 (673)
T ss_pred             eeeeccCC----ceEEeecccccC--ccccccCCCCCc--ceeeec-------cc-cceEEEeecCCceeEEEecccCCC
Confidence            44444434    368887776543  244566654432  356667       23 34455554  56789999755321


Q ss_pred             CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCC
Q 010748          231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD  310 (502)
Q Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~  310 (502)
                        .....+                     ....+  +.-.|++.... ..++++|+..++|+|||++...+.+.++.|.+
T Consensus        69 --~~Vp~~---------------------~k~~g--d~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s  122 (673)
T KOG4378|consen   69 --PEVPRV---------------------RKLTG--DNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQS  122 (673)
T ss_pred             --Ccccee---------------------ecccc--chHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcc
Confidence              111111                     11112  23344444444 35899999999999999998888888899999


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 010748          311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  389 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~  389 (502)
                      .|+++.++... .+|++++..|-|.|..+.++.....+... ...|.-+.|+|....++.+++.+|.|.+||+...    
T Consensus       123 tvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~----  197 (673)
T KOG4378|consen  123 TVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM----  197 (673)
T ss_pred             eeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC----
Confidence            99999999988 89999999999999999987765533333 3446689999998888899999999999999876    


Q ss_pred             CCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748          390 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       390 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~  469 (502)
                          .........|..+...|+|+|..+.+|++.+.|+.|.+||.+..+......   ...+..+++|.++|.+ |++|+
T Consensus       198 ----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~-L~aG~  269 (673)
T KOG4378|consen  198 ----SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECGTY-LCAGN  269 (673)
T ss_pred             ----CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCceE-EEeec
Confidence                233444568999999999999998999999999999999999766322222   3467899999999985 89999


Q ss_pred             CCCcEEEEECCCCccccccc
Q 010748          470 SKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       470 ~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ..|.|..||++..+......
T Consensus       270 s~G~~i~YD~R~~k~Pv~v~  289 (673)
T KOG4378|consen  270 SKGELIAYDMRSTKAPVAVR  289 (673)
T ss_pred             CCceEEEEecccCCCCceEe
Confidence            99999999998876544433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=4.7e-24  Score=191.02  Aligned_cols=245  Identities=17%  Similarity=0.215  Sum_probs=195.6

Q ss_pred             CeeeeeccccCCCcceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccc
Q 010748          180 NLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSI  258 (502)
Q Consensus       180 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  258 (502)
                      .|..|.+.+     .|++-       +|. -..+|+|+.||.|+|||+..-                           ..
T Consensus        61 ~L~gHrdGV-----~~lak-------hp~~ls~~aSGs~DG~VkiWnlsqR---------------------------~~  101 (433)
T KOG0268|consen   61 SLDGHRDGV-----SCLAK-------HPNKLSTVASGSCDGEVKIWNLSQR---------------------------EC  101 (433)
T ss_pred             hcccccccc-----chhhc-------CcchhhhhhccccCceEEEEehhhh---------------------------hh
Confidence            445566555     45544       454 378999999999999999753                           33


Q ss_pred             cccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748          259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd  338 (502)
                      ...+..|.+.|..|++...   .+++++.|.+|+.|-+.. .+++++-+ ...++.+.-+..+ ..++|++.  .|.|||
T Consensus       102 ~~~f~AH~G~V~Gi~v~~~---~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD  173 (433)
T KOG0268|consen  102 IRTFKAHEGLVRGICVTQT---SFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWD  173 (433)
T ss_pred             hheeecccCceeeEEeccc---ceEEecCCcceeeeeccC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecc
Confidence            4456789999999999873   688999999999999765 47777754 5567788777777 78888875  599999


Q ss_pred             cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      .+...++..+.-....|.++.|+|....+|+++.+|+.|.+||+|+.         .++..+.. ...-+.|+|+|.+ .
T Consensus       174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~---------~Pl~KVi~-~mRTN~IswnPea-f  242 (433)
T KOG0268|consen  174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA---------SPLKKVIL-TMRTNTICWNPEA-F  242 (433)
T ss_pred             cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC---------Cccceeee-eccccceecCccc-c
Confidence            98777766554455679999999988888888889999999999997         44444432 3345789999965 7


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      .+++|+.|..++.||++.... .+..+.+|...|..+.|+|.|+- +++||.|.+|+||.+..+..
T Consensus       243 nF~~a~ED~nlY~~DmR~l~~-p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~S  306 (433)
T KOG0268|consen  243 NFVAANEDHNLYTYDMRNLSR-PLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHS  306 (433)
T ss_pred             ceeeccccccceehhhhhhcc-cchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcc
Confidence            888999999999999998763 56778899999999999999995 99999999999999976653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=7.4e-25  Score=212.06  Aligned_cols=222  Identities=25%  Similarity=0.419  Sum_probs=195.6

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ..++.+++|+.+-.+-+|.+......                           ..+.+|..+|.+|.|++. ..+|++|+
T Consensus        38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i---------------------------~S~~~hespIeSl~f~~~-E~Llaags   89 (825)
T KOG0267|consen   38 KSSRSLVTGGEDEKVNLWAIGKPNAI---------------------------TSLTGHESPIESLTFDTS-ERLLAAGS   89 (825)
T ss_pred             ccceeeccCCCceeeccccccCCchh---------------------------heeeccCCcceeeecCcc-hhhhcccc
Confidence            45789999999999999988643222                           135689999999999998 66999999


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      .+|+|++||+...+.++++.+|...+.++.|+|.+ .++++|+.|+.+++||++...+...+..|...+.++.|+|+|. 
T Consensus        90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr-  167 (825)
T KOG0267|consen   90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR-  167 (825)
T ss_pred             cCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc-
Confidence            99999999999999999999999999999999999 8889999999999999998888877777888899999999876 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      +++.|++|..+++||++.+         +....+..|.+.+.++.|+|.. .++++|+.|++|++||+++..  .+....
T Consensus       168 ~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe--~I~s~~  235 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE--VISSGK  235 (825)
T ss_pred             eeeccCCcceeeeeccccc---------ccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE--EeeccC
Confidence            8999999999999999987         7788889999999999999986 899999999999999999776  455556


Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~~d  471 (502)
                      .....|.+.+|+|++. .+++|...
T Consensus       236 ~~~~~v~~~~fn~~~~-~~~~G~q~  259 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDGK-IVLSGEQI  259 (825)
T ss_pred             CccCCceeeeecCCce-eeecCchh
Confidence            6678899999999998 46665544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=8.3e-25  Score=211.69  Aligned_cols=211  Identities=23%  Similarity=0.346  Sum_probs=191.9

Q ss_pred             cCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      ..|...|.|+..-.. ...+++|+.|..+-+|.+....++..|.+|..+|.||.|++.. .+|++|+.+|+|++||+...
T Consensus        25 ~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhh
Confidence            368899999988544 5689999999999999998888888899999999999999998 89999999999999999998


Q ss_pred             CCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748          343 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      +....+.+|...+.++.|+|.+. +++.|+.|+.+.+||.+..         .+.+.+.+|...|.++.|+|+| .+++.
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~---------Gc~~~~~s~~~vv~~l~lsP~G-r~v~~  171 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKK---------GCSHTYKSHTRVVDVLRLSPDG-RWVAS  171 (825)
T ss_pred             hhhhhhhccccCcceeeeccceE-Eeccccccccceehhhhcc---------CceeeecCCcceeEEEeecCCC-ceeec
Confidence            88888889999999999999876 7789999999999999976         6888899999999999999998 99999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |+.|..++|||+..++  .+..+..|.+.+.++.|+|..- ++++||.|+++++||+++...+.+.-
T Consensus       172 g~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  172 GGEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFEVISSGK  235 (825)
T ss_pred             cCCcceeeeecccccc--cccccccccccccccccCchhh-hhccCCCCceeeeeccceeEEeeccC
Confidence            9999999999999988  6778899999999999999875 89999999999999999877765443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.9e-22  Score=194.94  Aligned_cols=306  Identities=16%  Similarity=0.192  Sum_probs=223.4

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CCeeeee-----------------ccccCCCcceeeeecCCCCCC
Q 010748          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHH-----------------HIIIPAFPLCMAWLDCPLKDR  206 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~s  206 (502)
                      -+|.-+.++|++|+.++     -|..|+.....- ..|..-|                 .....-||-|++.     .|+
T Consensus       264 nCIcVs~r~I~cgCa~g-----~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~-----~Fd  333 (1080)
T KOG1408|consen  264 NCICVSSRLIACGCAKG-----MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIAC-----QFD  333 (1080)
T ss_pred             ceeeeecceEEEeeccc-----eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEE-----Eec
Confidence            34455788999999998     444444332200 0000001                 0111234555543     357


Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC--------
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--------  278 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--------  278 (502)
                      +....|.+...|..|+|||+.....+                        .....+..|...|+++.--|-.        
T Consensus       334 et~~klscVYndhSlYvWDvrD~~kv------------------------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~ac  389 (1080)
T KOG1408|consen  334 ETTDKLSCVYNDHSLYVWDVRDVNKV------------------------GKCSSMLYHSACIWDVENLPCNVHSPTAAC  389 (1080)
T ss_pred             CCCceEEEEEcCceEEEEeccccccc------------------------cceeeeeeccceeeeeccccccccCccccc
Confidence            78889999999999999999754322                        2233445688888888766511        


Q ss_pred             --CcEEEEEecCCcEEEEeCCCCe---eeE----------------------------------eeccCCCCeEEEEEcC
Q 010748          279 --RNILASASADKQVKIWDVAAGK---CNL----------------------------------TLEHHTDKVQAVAWNH  319 (502)
Q Consensus       279 --~~~l~sgs~dg~v~vwd~~~~~---~~~----------------------------------~~~~h~~~v~~l~~~~  319 (502)
                        +..+.+||.|++|++|++..+.   ..+                                  ..-...-.+.+++.+|
T Consensus       390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp  469 (1080)
T KOG1408|consen  390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP  469 (1080)
T ss_pred             CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence              2368999999999999987521   100                                  0001234689999999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC--CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc
Q 010748          320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       320 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  397 (502)
                      ++ +.|++|..-|.+++|++...........|...|.|+.|+.-  +..++++++.|..|++||+...        ..++
T Consensus       470 ~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--------y~l~  540 (1080)
T KOG1408|consen  470 DG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--------YDLV  540 (1080)
T ss_pred             Cc-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--------cchh
Confidence            99 99999999999999999998888888899999999999752  3457899999999999999876        3566


Q ss_pred             eEEeccCCCeeEEEEcCCC------------------------------------------------CCEEEEEeCCCcE
Q 010748          398 FTLHAHDKAVCTISYNPLV------------------------------------------------PNLLATGSTDKMV  429 (502)
Q Consensus       398 ~~~~~h~~~v~~l~~sp~~------------------------------------------------~~~l~t~s~dg~i  429 (502)
                      .++.+|...|+++.|..+|                                                ..++++++.|..|
T Consensus       541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni  620 (1080)
T KOG1408|consen  541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI  620 (1080)
T ss_pred             hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence            6677777777766653322                                                1689999999999


Q ss_pred             EEEECCCCCeeEEEE-ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          430 KLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      +||++.+++....+. -..|.|....+...|.|-| ||+...|.++.++|+.+++++.+.++|..-
T Consensus       621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA~m~GHsE~  685 (1080)
T KOG1408|consen  621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVAQMTGHSEA  685 (1080)
T ss_pred             EEEeccccceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhhhhcCcchh
Confidence            999999988433222 2356788999999999997 899999999999999999999999998654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.1e-22  Score=199.06  Aligned_cols=276  Identities=17%  Similarity=0.249  Sum_probs=209.0

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      |...-..++|.|+|++|++++.+++   +++|.-.... ..|.....+    ....+++         ...+++|++|+.
T Consensus        12 ht~G~t~i~~d~~gefi~tcgsdg~---ir~~~~~sd~-e~P~ti~~~----g~~v~~i---------a~~s~~f~~~s~   74 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGEFICTCGSDGD---IRKWKTNSDE-EEPETIDIS----GELVSSI---------ACYSNHFLTGSE   74 (933)
T ss_pred             ccCceEEEEEcCCCCEEEEecCCCc---eEEeecCCcc-cCCchhhcc----CceeEEE---------eecccceEEeec
Confidence            6677889999999999999999983   3555444332 122222211    1111333         236779999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      +++|.+|.+..++.-.                           .+...+-++++++|+.+ +.++|.||.|-.|++-++.
T Consensus        75 ~~tv~~y~fps~~~~~---------------------------iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~  126 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDT---------------------------ILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLD  126 (933)
T ss_pred             cceEEEeeCCCCCccc---------------------------eeeeeeccceEEEEecC-CcEEEeecCceeEEEEecc
Confidence            9999999997654321                           22245678999999998 6799999999999999999


Q ss_pred             CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--------ecCCeeEEEeCCCCCCEEE
Q 010748          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~~~  369 (502)
                      .......+++|.++|.+|.|+|.+ .+|++.+.||.|++|++..+........        ....+..++|+|++. .++
T Consensus       127 D~s~~~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la  204 (933)
T KOG1274|consen  127 DSSQEKVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLA  204 (933)
T ss_pred             ccchheeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEE
Confidence            999999999999999999999999 9999999999999999998765443221        134577889999977 577


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEE--eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                      +...++.|.+|+....         ...+.+  ..+...++.+.|+|+| .+||+++.+|.|.|||..+..      ...
T Consensus       205 ~~~~d~~Vkvy~r~~w---------e~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~------~~~  268 (933)
T KOG1274|consen  205 VPPVDNTVKVYSRKGW---------ELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE------RHE  268 (933)
T ss_pred             eeccCCeEEEEccCCc---------eeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch------hcc
Confidence            7778999999998886         334443  3345559999999998 999999999999999998733      122


Q ss_pred             CCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vw  477 (502)
                      ....|.+++|.|+..- +..-...|...+|
T Consensus       269 ~~~~Vc~~aw~p~~n~-it~~~~~g~~~~~  297 (933)
T KOG1274|consen  269 FKRAVCCEAWKPNANA-ITLITALGTLGVS  297 (933)
T ss_pred             ccceeEEEecCCCCCe-eEEEeeccccccC
Confidence            3467999999999873 5544455554444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1.4e-21  Score=182.17  Aligned_cols=282  Identities=21%  Similarity=0.340  Sum_probs=210.8

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      .+.|....|+|.+.-|.+.+..+   ++..|.+..... +...++..++   ..+.+|+++       .++|. +++|..
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk~---H~~Fw~~~~~~l~k~~~~fek~e---kk~Vl~v~F-------~engd-viTgDS  265 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGKG---HLYFWTLRGGSLVKRQGIFEKRE---KKFVLCVTF-------LENGD-VITGDS  265 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCCc---eEEEEEccCCceEEEeecccccc---ceEEEEEEE-------cCCCC-EEeecC
Confidence            45678999999988877777665   455554332221 0111222222   266788887       45564 789999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      +|.|.||+..+..                           .......|.+.|.+|+...+ + .|+||+.|..|..||-.
T Consensus       266 ~G~i~Iw~~~~~~---------------------------~~k~~~aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd~~  316 (626)
T KOG2106|consen  266 GGNILIWSKGTNR---------------------------ISKQVHAHDGGVFSLCMLRD-G-TLLSGGKDRKIILWDDN  316 (626)
T ss_pred             CceEEEEeCCCce---------------------------EEeEeeecCCceEEEEEecC-c-cEeecCccceEEecccc
Confidence            9999999975421                           11122279999999999998 4 57779999999999832


Q ss_pred             CCe----------------------------------------eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          298 AGK----------------------------------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       298 ~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iw  337 (502)
                      -.+                                        ......+|......++.+|.. .++++++.|+.+++|
T Consensus       317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW  395 (626)
T KOG2106|consen  317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLW  395 (626)
T ss_pred             ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEc
Confidence            000                                        011234688889999999998 889999999999999


Q ss_pred             ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      +   ............++.|+.|+|.+  .+++|+..|...+.|..+.          .+.+++....++++++|+|+| 
T Consensus       396 ~---~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~----------~lv~~~~d~~~ls~v~ysp~G-  459 (626)
T KOG2106|consen  396 N---DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ----------DLVTIHTDNEQLSVVRYSPDG-  459 (626)
T ss_pred             c---CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccc----------eeEEEEecCCceEEEEEcCCC-
Confidence            9   33344455678899999999976  7999999999999999874          344455458999999999998 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      .+||.|+.|+.|+||-+..+..........+..+|+.+.|++|++| |.+-+.|-.|..|....
T Consensus       460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~-~~~~S~d~eiLyW~~~~  522 (626)
T KOG2106|consen  460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF-LVSNSGDYEILYWKPSE  522 (626)
T ss_pred             CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce-EEeccCceEEEEEcccc
Confidence            9999999999999999987664444444445589999999999997 88888888999994433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=1e-22  Score=196.55  Aligned_cols=225  Identities=18%  Similarity=0.250  Sum_probs=190.1

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee-EEeccCCCcEEEEEe
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs  286 (502)
                      ++-.+++++.||++++|+-..                         +.....+.+.+|.+-|.+ +++-+..+-.|++|+
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~-------------------------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKG-------------------------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGG   78 (745)
T ss_pred             CCeEEeecCCCCceeeeeccC-------------------------cccccceecccCcceeeccceeccccCcceEeec
Confidence            466899999999999998532                         222233445567777777 888764345799999


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      .|++|.+|.+.+..++.++++|...|+|+....++ . +++||.|.++++|-.....  ....+|...|.++..-|.+  
T Consensus        79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~--~~l~gH~asVWAv~~l~e~--  152 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV--YSLQGHTASVWAVASLPEN--  152 (745)
T ss_pred             ccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchhhh--cccCCcchheeeeeecCCC--
Confidence            99999999999999999999999999999988877 3 9999999999999876433  3367899999999999865  


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      .+++|+.|.+|++|.-.           ..+.++.+|+..|.++++-+.  ..+++|+.||.|++|++ ++.  ++....
T Consensus       153 ~~vTgsaDKtIklWk~~-----------~~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~-~ge--~l~~~~  216 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKGG-----------TLLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDL-DGE--VLLEMH  216 (745)
T ss_pred             cEEeccCcceeeeccCC-----------chhhhhccchhheeeeEEecC--CCeEeecCCceEEEEec-cCc--eeeeee
Confidence            79999999999999864           668889999999999999985  46899999999999999 454  688899


Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      +|...|+++...+++. +++++|.|++++||+..
T Consensus       217 ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  217 GHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence            9999999999766666 69999999999999976

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.8e-22  Score=170.67  Aligned_cols=256  Identities=19%  Similarity=0.271  Sum_probs=193.8

Q ss_pred             CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCCeeeeeccccCCCcceeeeecCCCCCCC-CCCE
Q 010748          135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNF  211 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~  211 (502)
                      +..|++.|.+++..--|..||++++++   .++|+.......  ....| ..|.    +....+.|.      +| -|++
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~---tVkIf~v~~n~~s~ll~~L-~Gh~----GPVwqv~wa------hPk~G~i   72 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDG---TVKIFEVRNNGQSKLLAEL-TGHS----GPVWKVAWA------HPKFGTI   72 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCc---cEEEEEEcCCCCceeeeEe-cCCC----CCeeEEeec------ccccCcE
Confidence            456889999999999999999999998   556665554432  11122 2333    333788886      44 4999


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCCc
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQ  290 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~  290 (502)
                      ||++++||.|.||.-..++                         .........|...|++++|.|.. +.+||+++.||.
T Consensus        73 LAScsYDgkVIiWke~~g~-------------------------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~  127 (299)
T KOG1332|consen   73 LASCSYDGKVIIWKEENGR-------------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK  127 (299)
T ss_pred             eeEeecCceEEEEecCCCc-------------------------hhhhhhhhhhcccceeecccccccceEEEEeeCCCc
Confidence            9999999999999976531                         33344566899999999999863 458999999999


Q ss_pred             EEEEeCCCC---eeeEeeccCCCCeEEEEEcCC---C----------CcEEEEEeCCCcEEEEecCCCCC--ccceEeec
Q 010748          291 VKIWDVAAG---KCNLTLEHHTDKVQAVAWNHH---S----------PQILLSGSFDRSVVMKDARISTH--SGFKWAVA  352 (502)
Q Consensus       291 v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~---~----------~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~  352 (502)
                      |.|.+.+..   ...+....|.-.|++++|.|.   |          ...|++|+.|..|+||+.....-  -..+..|.
T Consensus       128 vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~  207 (299)
T KOG1332|consen  128 VSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK  207 (299)
T ss_pred             EEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc
Confidence            999988754   223345789999999999986   2          14699999999999999987532  22356789


Q ss_pred             CCeeEEEeCCCC---CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          353 ADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       353 ~~v~~v~~~~~~---~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ..|+.++|.|.-   ..++++++.||+|.||-.+.....      -....+......+.+++|++.| ++|+.++.|+.|
T Consensus       208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkv  280 (299)
T KOG1332|consen  208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKV  280 (299)
T ss_pred             hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------ccccccccCCcceEEEEEeccc-cEEEEecCCcEE
Confidence            999999999963   347999999999999998843211      1122233356789999999998 999999999999


Q ss_pred             EEEECCC
Q 010748          430 KLWDLSN  436 (502)
Q Consensus       430 ~vwd~~~  436 (502)
                      .+|--..
T Consensus       281 tlwke~~  287 (299)
T KOG1332|consen  281 TLWKENV  287 (299)
T ss_pred             EEEEeCC
Confidence            9996543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=6e-22  Score=184.21  Aligned_cols=268  Identities=17%  Similarity=0.212  Sum_probs=206.8

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      .+.++.|..... |++++..++ ..+.+|.-+....   .+........ .-..|+...       ....|+++|+..+.
T Consensus        36 g~~s~~w~~~n~-lvvas~~gd-k~~~~~~K~g~~~---~Vp~~~k~~g-d~~~Cv~~~-------s~S~y~~sgG~~~~  102 (673)
T KOG4378|consen   36 GDFSFNWQRRNF-LVVASMAGD-KVMRIKEKDGKTP---EVPRVRKLTG-DNAFCVACA-------SQSLYEISGGQSGC  102 (673)
T ss_pred             cceeeeccccce-EEEeecCCc-eeEEEecccCCCC---ccceeecccc-chHHHHhhh-------hcceeeeccCcCce
Confidence            388899988877 556655554 2334443333221   2221111111 123566553       34689999999999


Q ss_pred             EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~  300 (502)
                      |.|||+..                           +.....+.+|+..|+++.++.. ..+||+++..|.|.|..+.++.
T Consensus       103 Vkiwdl~~---------------------------kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~  154 (673)
T KOG4378|consen  103 VKIWDLRA---------------------------KLIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQ  154 (673)
T ss_pred             eeehhhHH---------------------------HHHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCc
Confidence            99999963                           4445567799999999999988 5599999999999999999998


Q ss_pred             eeEeeccCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748          301 CNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       301 ~~~~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~  378 (502)
                      ....|...+ ..|.-+.|+|....+|.+++.+|.|.+||+....... ....|..+...++|+|.++.+|++.+.|..|.
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~  234 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKIN  234 (673)
T ss_pred             cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEE
Confidence            888886543 4566899999987889999999999999998876543 23468889999999999999999999999999


Q ss_pred             EEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748          379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +||++..         .....+ ....+.+.++|+++| .+|++|...|.|..||++..+ .++..+..|...|++++|-
T Consensus       235 ~yD~~s~---------~s~~~l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  235 IYDIRSQ---------ASTDRL-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQ  302 (673)
T ss_pred             Eeecccc---------ccccee-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEee
Confidence            9999965         233333 346788999999998 999999999999999999765 4678888899999999998


Q ss_pred             CCC
Q 010748          459 EDS  461 (502)
Q Consensus       459 pd~  461 (502)
                      |.-
T Consensus       303 ~s~  305 (673)
T KOG4378|consen  303 PSP  305 (673)
T ss_pred             ecc
Confidence            764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.6e-21  Score=194.07  Aligned_cols=242  Identities=17%  Similarity=0.262  Sum_probs=193.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .|+|++|++++.||.|++|+...... .|..                         ...|...|.+++....   +|++|
T Consensus        22 d~~gefi~tcgsdg~ir~~~~~sd~e-~P~t-------------------------i~~~g~~v~~ia~~s~---~f~~~   72 (933)
T KOG1274|consen   22 DPDGEFICTCGSDGDIRKWKTNSDEE-EPET-------------------------IDISGELVSSIACYSN---HFLTG   72 (933)
T ss_pred             cCCCCEEEEecCCCceEEeecCCccc-CCch-------------------------hhccCceeEEEeeccc---ceEEe
Confidence            78999999999999999999764321 1110                         1126788888887643   89999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      +.+++|.+|.+..+..-..+...+-++.+++|+.+| .+++.||.|-.|++.++..........+|.++|.++.|+|.+.
T Consensus        73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~  151 (933)
T KOG1274|consen   73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN  151 (933)
T ss_pred             eccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC
Confidence            999999999999887666666667899999999999 8999999999999999998888888889999999999999865


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~  445 (502)
                       ++++++.||.|++|++..+..........+...+ .....++.++|+|++ ..++..+.|+.|++|+..+..+......
T Consensus       152 -fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~  228 (933)
T KOG1274|consen  152 -FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-ILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRD  228 (933)
T ss_pred             -EEEEEecCceEEEEEcccchhhhhcccCCccccc-cccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecc
Confidence             8999999999999999987321111000000000 114567889999998 6677777899999999999886555555


Q ss_pred             cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ..+...+..++|+|.|.| ||+++.+|.|.|||+.+
T Consensus       229 ~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  229 KLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT  263 (933)
T ss_pred             cccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence            666666999999999997 99999999999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=1.7e-22  Score=186.27  Aligned_cols=208  Identities=20%  Similarity=0.306  Sum_probs=172.7

Q ss_pred             cCcccceeeEEeccCCC-cEEEEEecCCcEEEEeCCCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          263 GSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~-~~l~sgs~dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iw  337 (502)
                      ..|.++|++++|+|... +++|+|..-|.|-+||+.+.    .-+..+..|+.+|.+|.|+|.+...+++.|+||+|++-
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            35889999999999855 79999999999999999532    23556788999999999999999999999999999999


Q ss_pred             ecCCCCCccceEe--ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          338 DARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       338 d~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      |+...........  ....+..+.|+.... .++.+..=|.+.+||+|+.        ......+..|...|++++++|.
T Consensus       263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~--------~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  263 DFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTD--------GSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             eecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecC--------CccchhhhhhhcccceeecCCC
Confidence            9987654332222  344566777877655 5677777779999999998        3557777889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeE--EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          416 VPNLLATGSTDKMVKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      .+.+|+|+|.|++++|||++......  +.....|...|.++.|||.+.. |+|.+.|..|+|||..
T Consensus       334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence            99999999999999999998754322  4556678999999999999985 8888999999999984

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=1.2e-21  Score=173.72  Aligned_cols=304  Identities=17%  Similarity=0.268  Sum_probs=209.2

Q ss_pred             CCCCccccccccccCC----C-ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC-C
Q 010748          135 DDEDSEDLEDMTINPN----D-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-K  208 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~----~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-~  208 (502)
                      .++|...|..++|.+-    . ..+|+++..    .+.+|.+..... ...+....+...+.-.+.++|..-    +. .
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~----rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd----~~~~  104 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN----RVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYD----SNTG  104 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc----EEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEec----CCCC
Confidence            3567788888888842    2 233333322    466666655441 112222222222333355677421    22 3


Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      ..+||+|+.-|.|+|.|+.++.                           ....+.+|..+|+.|.++|...++|++||.|
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~---------------------------~~~~~~ghG~sINeik~~p~~~qlvls~SkD  157 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQ---------------------------CSKNYRGHGGSINEIKFHPDRPQLVLSASKD  157 (385)
T ss_pred             CeeEEeecceeEEEEEecchhh---------------------------hccceeccCccchhhhcCCCCCcEEEEecCC
Confidence            6689999999999999997533                           3335668999999999999988999999999


Q ss_pred             CcEEEEeCCCCeeeEee---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-------------------
Q 010748          289 KQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-------------------  346 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------------  346 (502)
                      .+|++|++++..|+..|   .+|.+.|.++.|++++ .+|++++.|.+|++|++..++...                   
T Consensus       158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt  236 (385)
T KOG1034|consen  158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPT  236 (385)
T ss_pred             ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCc
Confidence            99999999999999988   5799999999999999 799999999999999998432110                   


Q ss_pred             ---------ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCC-----CCCCCCccceEEeccCCCeeEE--
Q 010748          347 ---------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD-----PDSTSQQSSFTLHAHDKAVCTI--  410 (502)
Q Consensus       347 ---------~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l--  410 (502)
                               ....|...|-|+.|--   .++++-+-++.|.+|-.-.....     +.......+..+.-....|.-+  
T Consensus       237 ~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf  313 (385)
T KOG1034|consen  237 PKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF  313 (385)
T ss_pred             cccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence                     0112344566666653   37888788889999987322111     0000012223333344445444  


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE--ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      +|.|.+ .+||.|...|.|.+||++...+....+  .......|...+|+.|+. +|+....+++|.-||..
T Consensus       314 ~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  314 AFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence            556666 899999999999999999877632222  223356799999999999 56677899999999864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=9.2e-22  Score=188.30  Aligned_cols=247  Identities=15%  Similarity=0.190  Sum_probs=179.9

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      +.+.|       -|....|++++.|.+|++||+........                         ..+.+|...|.+++
T Consensus       104 fDl~w-------apge~~lVsasGDsT~r~Wdvk~s~l~G~-------------------------~~~~GH~~SvkS~c  151 (720)
T KOG0321|consen  104 FDLKW-------APGESLLVSASGDSTIRPWDVKTSRLVGG-------------------------RLNLGHTGSVKSEC  151 (720)
T ss_pred             Eeecc-------CCCceeEEEccCCceeeeeeeccceeecc-------------------------eeecccccccchhh
Confidence            56666       46677899999999999999986443321                         13458999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCe---------------------------eeEeeccCCCCeEE---EEEcCCCCc
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGK---------------------------CNLTLEHHTDKVQA---VAWNHHSPQ  323 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~---------------------------~~~~~~~h~~~v~~---l~~~~~~~~  323 (502)
                      |.|.....|++|+.||.|.|||++-..                           .++....|...|.+   +.+..++ .
T Consensus       152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~  230 (720)
T KOG0321|consen  152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-S  230 (720)
T ss_pred             hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-c
Confidence            999999999999999999999986321                           11122234445555   5555666 6


Q ss_pred             EEEEEeC-CCcEEEEecCCCCCccceE--------ee---cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 010748          324 ILLSGSF-DRSVVMKDARISTHSGFKW--------AV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS  391 (502)
Q Consensus       324 ~l~s~s~-dg~i~iwd~~~~~~~~~~~--------~~---~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~  391 (502)
                      .|++++. |+.|+|||+|.........        .+   .-.+.++.....|. ++++.+.|+.|++|+++....    
T Consensus       231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~----  305 (720)
T KOG0321|consen  231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSI----  305 (720)
T ss_pred             eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCc----
Confidence            7888877 9999999999765432111        11   33577888888777 455555699999999998753    


Q ss_pred             CCCccceEEeccCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748          392 TSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       392 ~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~  469 (502)
                         .++..+.++...  -..-..+|++ .+|++|+.|...++|.+.+... ....+.+|...|++++|.|..---+++++
T Consensus       306 ---sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcS  380 (720)
T KOG0321|consen  306 ---SPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCS  380 (720)
T ss_pred             ---CchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeec
Confidence               445555444322  1222467887 9999999999999999988763 45566789999999999875433377789


Q ss_pred             CCCcEEEEECCCCc
Q 010748          470 SKGKLEIWDTLSDA  483 (502)
Q Consensus       470 ~dg~i~vwd~~~~~  483 (502)
                      .|.+++||++..+-
T Consensus       381 dD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  381 DDFRVKIWRLSNGL  394 (720)
T ss_pred             cCcceEEEeccCch
Confidence            99999999996543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.8e-21  Score=170.60  Aligned_cols=304  Identities=11%  Similarity=0.144  Sum_probs=206.2

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE-E
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-V  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-~  214 (502)
                      ..|..+|++++|+.+|+.|++++.++   .++||..+.-..      ..|..+....++.   .+..+.|+||-+-++ .
T Consensus        83 KgH~~~vt~~~FsSdGK~lat~~~Dr---~Ir~w~~~DF~~------~eHr~~R~nve~d---hpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDGKKLATISGDR---SIRLWDVRDFEN------KEHRCIRQNVEYD---HPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             hccCCceeeeEEcCCCceeEEEeCCc---eEEEEecchhhh------hhhhHhhccccCC---CceEEEECCCcceEEEE
Confidence            46899999999999999999999887   677777764322      2232222222221   122234478855544 4


Q ss_pred             ecCCCcEEEeeCCCCCC-cCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          215 GSMEPAIEIWDLDVIDE-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      .-...++++|.+..... ..+...                ...-.......|.-.|..+-.... ..+|+|++.|..|.+
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~----------------v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~l  213 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHF----------------VHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICL  213 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCccc----------------ccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEE
Confidence            44557899998853211 111000                000111122346667777766655 679999999999999


Q ss_pred             EeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC--------CccceEeecCCeeEEEeCCCCC
Q 010748          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--------HSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      |++. |+.+.++......-+..+.+|+| +++++++..--|++|.+--.+        ....+.+|.+.|..++|+++..
T Consensus       214 w~lk-Gq~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~  291 (420)
T KOG2096|consen  214 WDLK-GQLLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST  291 (420)
T ss_pred             EecC-CceeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence            9998 99999988777778888999999 999999999999999863211        2233557899999999999765


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE----EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                       .+++.+.||++++||+.-.......  ...+..    +..-.+.-..+.++|.+ ..|+.+ ....+++|..++++...
T Consensus       292 -r~vtvSkDG~wriwdtdVrY~~~qD--pk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s-~gs~l~~~~se~g~~~~  366 (420)
T KOG2096|consen  292 -RAVTVSKDGKWRIWDTDVRYEAGQD--PKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVS-FGSDLKVFASEDGKDYP  366 (420)
T ss_pred             -eeEEEecCCcEEEeeccceEecCCC--chHhhcCCcchhhcCCCceEEEeCCCC-cEEEee-cCCceEEEEcccCccch
Confidence             7999999999999998643211110  111111    22223444589999988 555543 34569999998876322


Q ss_pred             EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      . --..|.+.|.+++|+++|+| ++++| |..++|+.
T Consensus       367 ~-~e~~h~~~Is~is~~~~g~~-~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  367 E-LEDIHSTTISSISYSSDGKY-IATCG-DRYVRVIR  400 (420)
T ss_pred             h-HHHhhcCceeeEEecCCCcE-Eeeec-ceeeeeec
Confidence            2 22468899999999999996 77766 45777775

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=2.2e-21  Score=185.71  Aligned_cols=256  Identities=20%  Similarity=0.246  Sum_probs=183.4

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .....||++..+|.|.++|.....-.                     -.......+..|..+|..+.|-| +...|++++
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr---------------------~ee~~lk~~~aH~nAifDl~wap-ge~~lVsas  119 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFR---------------------LEERQLKKPLAHKNAIFDLKWAP-GESLLVSAS  119 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcc---------------------hhhhhhcccccccceeEeeccCC-CceeEEEcc
Confidence            35788999999999999998532110                     01222334558999999999999 588999999


Q ss_pred             cCCcEEEEeCCCCeeeEe--eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc------------------
Q 010748          287 ADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------------------  346 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------------------  346 (502)
                      .|.++++||+.+.+++..  +.+|.+.|.+++|.|.++..|++|+.||.|.|||+|-.....                  
T Consensus       120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            999999999999998877  889999999999999999999999999999999998432100                  


Q ss_pred             ---------ceEeecCC----eeEEEeCCCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCccceEEecc---CCCeeE
Q 010748          347 ---------FKWAVAAD----VESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCT  409 (502)
Q Consensus       347 ---------~~~~~~~~----v~~v~~~~~~~~~~~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h---~~~v~~  409 (502)
                               .-..+...    |+.+.| .+.. .|++++. |+.|++||+|+........ ......+..|   ...+++
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~-tlaSaga~D~~iKVWDLRk~~~~~r~e-p~~~~~~~t~skrs~G~~n  276 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLF-KDES-TLASAGAADSTIKVWDLRKNYTAYRQE-PRGSDKYPTHSKRSVGQVN  276 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEE-eccc-eeeeccCCCcceEEEeecccccccccC-CCcccCccCcccceeeeEE
Confidence                     00011222    444444 4444 5666665 9999999999874322110 1122233334   346788


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          410 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       410 l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +.....|..++|+| .|++|++|++.......+..+.++...  -..-..+|++.+ |++|+.+...++|.+.+-+.-..
T Consensus       277 L~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  277 LILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             EEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce-EeccCCCcceeeeeecCccCChh
Confidence            88888884555555 599999999998765555555554322  223356899997 88999999999999988766544


Q ss_pred             cc
Q 010748          488 RF  489 (502)
Q Consensus       488 ~~  489 (502)
                      .+
T Consensus       355 ~l  356 (720)
T KOG0321|consen  355 LL  356 (720)
T ss_pred             hh
Confidence            33

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=3.3e-20  Score=173.14  Aligned_cols=296  Identities=14%  Similarity=0.229  Sum_probs=215.0

Q ss_pred             CccccccccccCC--CceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCC-CCEEEE
Q 010748          138 DSEDLEDMTINPN--DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAV  214 (502)
Q Consensus       138 ~~~~v~~~~~~p~--~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~la~  214 (502)
                      -+..|.+++|++.  |++| ++-.++....|.||.|..+.... ......+.+     +..+|       +|. .+++++
T Consensus       153 f~~GV~~vaFsk~~~G~~l-~~vD~s~~h~lSVWdWqk~~~~~-~vk~sne~v-----~~a~F-------HPtd~nliit  218 (626)
T KOG2106|consen  153 FDRGVTCVAFSKINGGSLL-CAVDDSNPHMLSVWDWQKKAKLG-PVKTSNEVV-----FLATF-------HPTDPNLIIT  218 (626)
T ss_pred             ccccceeeeecccCCCceE-EEecCCCccccchhhchhhhccC-cceeccceE-----EEEEe-------ccCCCcEEEE
Confidence            3567999999976  3444 44444455688999998665311 111111111     33344       564 555666


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      .+ .|.+.+|++..+.......++.+                       ..+.-|+|++|.+++.  +++|..+|.|.||
T Consensus       219 ~G-k~H~~Fw~~~~~~l~k~~~~fek-----------------------~ekk~Vl~v~F~engd--viTgDS~G~i~Iw  272 (626)
T KOG2106|consen  219 CG-KGHLYFWTLRGGSLVKRQGIFEK-----------------------REKKFVLCVTFLENGD--VITGDSGGNILIW  272 (626)
T ss_pred             eC-CceEEEEEccCCceEEEeecccc-----------------------ccceEEEEEEEcCCCC--EEeecCCceEEEE
Confidence            55 58999999876554433332221                       1225699999999954  7899999999999


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC------------------------------
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------------------------------  344 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------------------------------  344 (502)
                      +..+.+..+....|.+.|.+++...+|  .|++|+.|+.|..||-.-.+.                              
T Consensus       273 ~~~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~  350 (626)
T KOG2106|consen  273 SKGTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF  350 (626)
T ss_pred             eCCCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence            998888888777999999999999998  577799999999998321000                              


Q ss_pred             ----------ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748          345 ----------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       345 ----------~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                                ......|......++.+|+.. ++++++.|+.+++|+  .         .++.++.. -..++.|+.|+|
T Consensus       351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~---------~k~~wt~~-~~d~~~~~~fhp  417 (626)
T KOG2106|consen  351 ILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--D---------HKLEWTKI-IEDPAECADFHP  417 (626)
T ss_pred             EEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--C---------CceeEEEE-ecCceeEeeccC
Confidence                      001123445677788899654 899999999999999  2         25666655 456789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          415 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       415 ~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      .|  .++.|+..|...+.|..+...  +..... ..++++++|+|+|.+ ||.|+.|+.|+||-+..+.....+.+...+
T Consensus       418 sg--~va~Gt~~G~w~V~d~e~~~l--v~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g  491 (626)
T KOG2106|consen  418 SG--VVAVGTATGRWFVLDTETQDL--VTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYSRVGKCSG  491 (626)
T ss_pred             cc--eEEEeeccceEEEEeccccee--EEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence            76  899999999999999998663  333333 788999999999995 999999999999999888777666665544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-20  Score=181.61  Aligned_cols=283  Identities=18%  Similarity=0.258  Sum_probs=223.4

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      .+|.+|+|+...+.||++..++   .++||.....--.++.++++.+..+    -.++|       . .+..|.+.+.+|
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g---~IEiwN~~~~w~~~~vi~g~~drsI----E~L~W-------~-e~~RLFS~g~sg   90 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDG---NIEIWNLSNNWFLEPVIHGPEDRSI----ESLAW-------A-EGGRLFSSGLSG   90 (691)
T ss_pred             cceEEEEEeccCCceeeeccCC---cEEEEccCCCceeeEEEecCCCCce----eeEEE-------c-cCCeEEeecCCc
Confidence            5799999999999999999998   7899988765543344444444333    45677       3 567788888899


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|.-||+.+....                           .......++|++++.+|. ...++.|+.||.+..++...+
T Consensus        91 ~i~EwDl~~lk~~---------------------------~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~  142 (691)
T KOG2048|consen   91 SITEWDLHTLKQK---------------------------YNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPD  142 (691)
T ss_pred             eEEEEecccCcee---------------------------EEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCc
Confidence            9999999864332                           233456689999999999 579999999998888888877


Q ss_pred             eeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE----e----ecCCeeEEEeCCCCCCEEE
Q 010748          300 KCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----A----VAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       300 ~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~----~~~~v~~v~~~~~~~~~~~  369 (502)
                      +...  .|...++.|.++.|+|++ ..+++|+.||.|++||..++.......    .    ...-|.++.|-.++  .++
T Consensus       143 ~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~  219 (691)
T KOG2048|consen  143 KITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIA  219 (691)
T ss_pred             eEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEE
Confidence            6543  344457899999999999 789999999999999999877544111    1    12236777777543  799


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEEEecC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRNP  447 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~~  447 (502)
                      +|...|+|.+||...+         ..+.....|.+.|.+++.++++ ..+++++.|+.|..|...++..  .....+..
T Consensus       220 sgDS~G~V~FWd~~~g---------TLiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~  289 (691)
T KOG2048|consen  220 SGDSAGTVTFWDSIFG---------TLIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL  289 (691)
T ss_pred             EecCCceEEEEcccCc---------chhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccC
Confidence            9999999999999987         7788889999999999999987 8999999999999998876642  23445567


Q ss_pred             CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      |...|.+++..++   .|++||.|..+.+-....
T Consensus       290 h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  290 HAHDVRSMAVIEN---ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             Ccccceeeeeecc---eEEecceeeEEEEccccc
Confidence            8888999999988   588999999988876655

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=3.7e-21  Score=182.86  Aligned_cols=312  Identities=16%  Similarity=0.228  Sum_probs=225.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      -.|.+.|.++...|.|.+|++|+.+|   +++||.+.++.    .++.   ..+.+...|++|.+.     ++-..||++
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDG---tvriWEi~TgR----cvr~---~~~d~~I~~vaw~P~-----~~~~vLAvA  461 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDG---TVRIWEIATGR----CVRT---VQFDSEIRSVAWNPL-----SDLCVLAVA  461 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCC---cEEEEEeecce----EEEE---EeecceeEEEEecCC-----CCceeEEEE
Confidence            46889999999999999999999887   67888887665    3332   224445589999532     344456666


Q ss_pred             cCCCcEEEeeCCCCCCcCc---ceecCCc-ch-----hhhhhccccCC-cccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          216 SMEPAIEIWDLDVIDEVQP---HVILGGI-DE-----EKKKKKSKKGK-KSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~---~~~l~~~-~~-----~~~~~~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .... +.|-+...++.+..   .-.|... ..     +...|...... ...-......|...|..+.|+.. +.+|++.
T Consensus       462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV  539 (733)
T KOG0650|consen  462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATV  539 (733)
T ss_pred             ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEe
Confidence            5444 66666544422211   1111111 00     00011111000 11112344468999999999999 4588887


Q ss_pred             ecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          286 SAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       286 s~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      ..+   ..|.|.++...+...-|+...+.|+++.|+|.. .+|++++ -..|++||+..+..+.........|.+++.+|
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp  617 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP  617 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence            654   469999998887777777678899999999999 5555555 46899999988776665666677899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC-------C
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL-------S  435 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~-------~  435 (502)
                      .|. .+++|+.++.+..||+.-.        .++..++..|...+++++|++.- .++++|+.||++.||--       .
T Consensus       618 ~GD-nli~gs~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~q  687 (733)
T KOG0650|consen  618 NGD-NLILGSYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQ  687 (733)
T ss_pred             CCC-eEEEecCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhc
Confidence            877 5888999999999999877        57889999999999999999987 79999999999999842       2


Q ss_pred             CCCeeEEEEecCCCCc----EEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          436 NNQPSCIASRNPKAGA----VFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~----v~~~~~spd~~~ll~sg~~dg~i~vw  477 (502)
                      +.-...+..+.+|...    |..+.|+|..++ |.++|.||+|++|
T Consensus       688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf  732 (733)
T KOG0650|consen  688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF  732 (733)
T ss_pred             CCceEeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence            2334566777777654    889999999997 7778899999998

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=6.8e-21  Score=168.54  Aligned_cols=291  Identities=19%  Similarity=0.280  Sum_probs=208.4

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCC-----CCCCCeeeeec--cccCCCcceeeeecCCCCCCCCCCE
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD-----GGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~-----~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      .+-...+.|+|+|.-|++-+.++   .|.+|.+-...     ........|..  .+-+...+.-.|.+.--...|+.++
T Consensus        49 ~nf~kgckWSPDGSciL~~sedn---~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   49 LNFLKGCKWSPDGSCILSLSEDN---CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             hhhhccceeCCCCceEEeecccC---eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence            34556789999999999998886   56777553221     11111111111  1112223445665432333588999


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc---ceeeEEeccCCCcEEEEEecC
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD---SVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +|+.+.+.-|++||.-++......                         ....|.+   +..+|+|+|+|. .|++|- .
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy-------------------------~~ydh~de~taAhsL~Fs~DGe-qlfaGy-k  178 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASY-------------------------RAYDHQDEYTAAHSLQFSPDGE-QLFAGY-K  178 (406)
T ss_pred             eeeccccCceeeeeccccccccch-------------------------hhhhhHHhhhhheeEEecCCCC-eEeecc-c
Confidence            999999999999998765432211                         1123433   445899999955 666554 5


Q ss_pred             CcEEEEeC-CCCee--eE-ee----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEe
Q 010748          289 KQVKIWDV-AAGKC--NL-TL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  360 (502)
Q Consensus       289 g~v~vwd~-~~~~~--~~-~~----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~  360 (502)
                      ..|+++|+ +.|+-  +. ++    .+..+-+.|++|+|.....++.|++..++-||.-....+.....+|.+.|+.++|
T Consensus       179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~  258 (406)
T KOG2919|consen  179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW  258 (406)
T ss_pred             ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEe
Confidence            78999999 44432  11 11    2236788999999999789999999999999998888888878899999999999


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC-CeeEE--EEcCCCCCEEEEEeCCCcEEEEECCC-
Q 010748          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTI--SYNPLVPNLLATGSTDKMVKLWDLSN-  436 (502)
Q Consensus       361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l--~~sp~~~~~l~t~s~dg~i~vwd~~~-  436 (502)
                      .++|.+++.-+..+-.|.+||+|..        ..+++.+..|.. .-..|  ...|.+ ++|++|+.||.|++||+.. 
T Consensus       259 ~edGn~lfsGaRk~dkIl~WDiR~~--------~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  259 CEDGNKLFSGARKDDKILCWDIRYS--------RDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             ccCcCeecccccCCCeEEEEeehhc--------cchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCC
Confidence            9998855555556889999999987        578888888866 33344  445777 9999999999999999988 


Q ss_pred             CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d  471 (502)
                      +.  .+..+..+...++.++++|--+ ++|+++..
T Consensus       330 gn--~~sv~~~~sd~vNgvslnP~mp-ilatssGq  361 (406)
T KOG2919|consen  330 GN--EVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ  361 (406)
T ss_pred             CC--cccccccccccccceecCcccc-eeeeccCc
Confidence            44  3555667888999999999977 68876643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.2e-20  Score=166.08  Aligned_cols=268  Identities=17%  Similarity=0.310  Sum_probs=191.0

Q ss_pred             CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCee---eeeccccCCCcceeeeecCCCCCCCC-CC
Q 010748          135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY---VHHHIIIPAFPLCMAWLDCPLKDREK-GN  210 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~s~~-~~  210 (502)
                      +..|.+-|.++.|.+-|+.+|+++.+.   +++||.++...+ .-...   .-|+..    ...+.|.      +|. |+
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq---~vkI~d~~~~s~-~W~~Ts~Wrah~~S----i~rV~WA------hPEfGq   74 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQ---TVKIWDSTSDSG-TWSCTSSWRAHDGS----IWRVVWA------HPEFGQ   74 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCC---cEEEEeccCCCC-ceEEeeeEEecCCc----EEEEEec------Cccccc
Confidence            346888899999999999999999997   678888755443 11111   223222    3678886      454 99


Q ss_pred             EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCC
Q 010748          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADK  289 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg  289 (502)
                      .+|+++.|+++.||.-.....                  ....+.......+......|+.+.|.|.. +-+||+++.||
T Consensus        75 vvA~cS~Drtv~iWEE~~~~~------------------~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG  136 (361)
T KOG2445|consen   75 VVATCSYDRTVSIWEEQEKSE------------------EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG  136 (361)
T ss_pred             eEEEEecCCceeeeeeccccc------------------ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence            999999999999998531100                  01112233444556677899999999963 45899999999


Q ss_pred             cEEEEeCCCC------eeeEeec-------cCCCCeEEEEEcCCC--CcEEEEEeCC-----CcEEEEecCCCC----Cc
Q 010748          290 QVKIWDVAAG------KCNLTLE-------HHTDKVQAVAWNHHS--PQILLSGSFD-----RSVVMKDARIST----HS  345 (502)
Q Consensus       290 ~v~vwd~~~~------~~~~~~~-------~h~~~v~~l~~~~~~--~~~l~s~s~d-----g~i~iwd~~~~~----~~  345 (502)
                      +|+||+....      ...+.++       .+..+..|+.|+|..  ..+|++|+.+     +.+.||......    ..
T Consensus       137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv  216 (361)
T KOG2445|consen  137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV  216 (361)
T ss_pred             EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence            9999986543      2333333       466788999999753  3577777765     478888765443    23


Q ss_pred             cceEeecCCeeEEEeCCCCC---CEEEEEeCCCcEEEEECCCCCC--------CC---CCCCCccceEEeccCCCeeEEE
Q 010748          346 GFKWAVAADVESLAWDPHAE---HSFVVSLEDGTIKGFDIRTAKS--------DP---DSTSQQSSFTLHAHDKAVCTIS  411 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~~~~~---~~~~~~~~dg~v~i~d~~~~~~--------~~---~~~~~~~~~~~~~h~~~v~~l~  411 (502)
                      ..+..+..+|+.++|.|.-+   .++++++.|| |+||.++....        ..   .......+..+..|++.|..+.
T Consensus       217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~  295 (361)
T KOG2445|consen  217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR  295 (361)
T ss_pred             hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence            33447889999999999733   4788999999 99999985321        00   0111234455678999999999


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          412 YNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      |+-.| ..|++.|.||.||+|...-
T Consensus       296 wNmtG-tiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  296 WNMTG-TILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             Eeeee-eEEeecCCCceeeehhhhh
Confidence            99988 9999999999999997654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.4e-21  Score=167.84  Aligned_cols=250  Identities=19%  Similarity=0.237  Sum_probs=190.3

Q ss_pred             EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~  290 (502)
                      .|++|++...|.-++++....--.               ........+.+.+..|..+|++++.+.   .++||||.|-+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~---------------~s~~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDet   64 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCT---------------DSVKPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDET   64 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccc---------------cccceeeeccccccccccceeEEEecc---eeEeccCCCCc
Confidence            478899988888888764220000               011112234566789999999999974   49999999999


Q ss_pred             EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEE
Q 010748          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~  369 (502)
                      |+|||+.+.+.+..+-.|.+.|+++.|.+.-. +.|++|+.||.|.+|+...-.....+..|.+.|+.++.+|.+. +.+
T Consensus        65 I~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LAL  143 (362)
T KOG0294|consen   65 IHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LAL  143 (362)
T ss_pred             EEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEE
Confidence            99999999999999999999999999988652 3799999999999999998887777888999999999999765 788


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  449 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~  449 (502)
                      +.+.|+.++.||+-.++.         -+.+.- ....+.+.|+|.| .+++.++.++ |-+|.+.+...   +......
T Consensus       144 sVg~D~~lr~WNLV~Gr~---------a~v~~L-~~~at~v~w~~~G-d~F~v~~~~~-i~i~q~d~A~v---~~~i~~~  208 (362)
T KOG0294|consen  144 SVGGDQVLRTWNLVRGRV---------AFVLNL-KNKATLVSWSPQG-DHFVVSGRNK-IDIYQLDNASV---FREIENP  208 (362)
T ss_pred             EEcCCceeeeehhhcCcc---------ceeecc-CCcceeeEEcCCC-CEEEEEeccE-EEEEecccHhH---hhhhhcc
Confidence            888999999999988732         222221 2223449999998 6666666654 89999887652   2222222


Q ss_pred             CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCC
Q 010748          450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK  496 (502)
Q Consensus       450 ~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  496 (502)
                      ..+.|+.|...+  .|++|+.++.|++||..+..++....+|....+
T Consensus       209 ~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK  253 (362)
T KOG0294|consen  209 KRILCATFLDGS--ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK  253 (362)
T ss_pred             ccceeeeecCCc--eEEEecCCceEEEeccCCCccceeeecchhhee
Confidence            557788886655  388899999999999998777777666655443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=2.3e-20  Score=162.77  Aligned_cols=208  Identities=20%  Similarity=0.349  Sum_probs=167.9

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee-eEee-----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~-~~~~-----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iw  337 (502)
                      .+-+.|.|+.|.|+ +..||+-. |..|.+|++..+.. +..+     ..|....++-+|+|...-..+....++++..|
T Consensus       121 eavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEE
Confidence            45568999999998 55676655 78999999987754 3333     23566788899999332334445568999999


Q ss_pred             ecCCCCCcc-ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          338 DARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       338 d~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      |+|+..... ....|...|..+.|+|+...++++++.||.|++||.|+.        ..+++.+.+|...|.++.|+|..
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEecCcc
Confidence            999866543 234677889999999998889999999999999999998        58999999999999999999988


Q ss_pred             CCEEEEEeCCCcEEEEECCCCC------------------------e---eEEEEecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748          417 PNLLATGSTDKMVKLWDLSNNQ------------------------P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~------------------------~---~~~~~~~~~~~~v~~~~~spd~~~ll~sg~  469 (502)
                      ..+|++|+.|..|.+|....-.                        +   -.+.++..|...|++++|+.-.+++||+-+
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence            8999999999999999764310                        0   124466778899999999999999999999


Q ss_pred             CCCcEEEEECCC
Q 010748          470 SKGKLEIWDTLS  481 (502)
Q Consensus       470 ~dg~i~vwd~~~  481 (502)
                      .||++.|=.+..
T Consensus       351 YDGRviIs~V~r  362 (370)
T KOG1007|consen  351 YDGRVIISSVPR  362 (370)
T ss_pred             cCceEEeecCCh
Confidence            999999876643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.87  E-value=2.4e-20  Score=185.23  Aligned_cols=251  Identities=18%  Similarity=0.278  Sum_probs=194.2

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|+.+.++      +.++||.|+.+|.|.+||+.......                     ..........|..+|+.+.
T Consensus       246 ~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------~s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  246 TCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDTP---------------------PSGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             eEEEeccC------CcceEEeeccCceEEEEEccCCCCCC---------------------CcccccccccCCcCeEEEE
Confidence            56666422      68899999999999999997543311                     1223334457999999999


Q ss_pred             eccCC-CcEEEEEecCCcEEEEeCCCCee------eEeec------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          274 WNKEF-RNILASASADKQVKIWDVAAGKC------NLTLE------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       274 ~~~~~-~~~l~sgs~dg~v~vwd~~~~~~------~~~~~------~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      |..+- ..-++++|.||.|+.|+++.-..      .....      .-...+++++|.+..++.|+.|+..|.|..-...
T Consensus       299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence            97652 13588999999999998764322      11111      1234689999999999999999999999874433


Q ss_pred             CCCC--------ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE
Q 010748          341 ISTH--------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       341 ~~~~--------~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  412 (502)
                      ..+.        ......|.+.|.++.++|.+..+|++++ |.+|++|.....        ..++..+..+...|++++|
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~--------~~Pl~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI--------ASPLLSLDSSPDYVTDVAW  449 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC--------CCcchhhhhccceeeeeEE
Confidence            2221        2234467889999999999987777777 999999998843        3778888888889999999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          413 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       413 sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ||..+.+++++..+|.|.+||+......++.+...+....+.+.|++.|+ +|++|...|.+.+|++..
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence            99999999999999999999998876656666666667778889999999 699999999999999964

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=1.7e-20  Score=170.21  Aligned_cols=223  Identities=19%  Similarity=0.310  Sum_probs=178.5

Q ss_pred             ccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeC
Q 010748          258 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF  330 (502)
Q Consensus       258 ~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~  330 (502)
                      ....+.||+.+|..++|+|.+.+.|||||.|.+|.||.+..+       .++..+.+|...|--+.|||.-.++|++++.
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            334567999999999999998999999999999999998754       4567788999999999999999999999999


Q ss_pred             CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC-eeE
Q 010748          331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCT  409 (502)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~-v~~  409 (502)
                      |.+|.+|++.++..... ..|...|.+++|+.+|. ++++.+.|..|++||.|++         ..+..-.+|.+. -..
T Consensus       153 Dn~v~iWnv~tgeali~-l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~R  221 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALIT-LDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPAR  221 (472)
T ss_pred             CceEEEEeccCCceeee-cCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCC---------cEeeecccccCCCcce
Confidence            99999999999887663 45999999999999876 8999999999999999997         666666777653 345


Q ss_pred             EEEcCCCCCEEEEEe---CCCcEEEEECCCCC-eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          410 ISYNPLVPNLLATGS---TDKMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       410 l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      +.|-.++ .++.||-   .+.++-+||..+.. +.....+.... .|.---|.++...+.++|-.|+.|+-|.+......
T Consensus       222 aifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~  299 (472)
T KOG0303|consen  222 AIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPF  299 (472)
T ss_pred             eEEeccC-ceeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCCcceEEEEecCCCce
Confidence            5666666 5444443   36789999987643 44555555544 46556678988877778888999999999887765


Q ss_pred             cccccCCC
Q 010748          486 SNRFSKYS  493 (502)
Q Consensus       486 ~~~~~~~~  493 (502)
                      ...+..+.
T Consensus       300 ~hyln~f~  307 (472)
T KOG0303|consen  300 VHYLNTFS  307 (472)
T ss_pred             eEEecccc
Confidence            55444443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=2.1e-19  Score=171.92  Aligned_cols=238  Identities=13%  Similarity=0.124  Sum_probs=166.3

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      ++++++++.++.|++||+.+.....                           .+..| ..+.+++|+|++..++++++.+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~---------------------------~~~~~-~~~~~l~~~~dg~~l~~~~~~~   52 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTR---------------------------TFPVG-QRPRGITLSKDGKLLYVCASDS   52 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEE---------------------------EEECC-CCCCceEECCCCCEEEEEECCC
Confidence            3578899999999999997543221                           12223 3467899999966455778889


Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~  368 (502)
                      +.|++||+.+++.+..+..+.. +..+.|+|++..++++++.++.|++||+++.+... .......+.+++|+|++. ++
T Consensus        53 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~-~l  129 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-EIPVGVEPEGMAVSPDGK-IV  129 (300)
T ss_pred             CeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-EeeCCCCcceEEECCCCC-EE
Confidence            9999999999988877765443 56789999994444555678999999998765433 233345578899999876 66


Q ss_pred             EEEeCCC-cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          369 VVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       369 ~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l-~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      +++..++ .+.+||.++.         ....... ....+.+++|+|++ .+| +++..++.|++||+.+++........
T Consensus       130 ~~~~~~~~~~~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~  198 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTY---------EIVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFE  198 (300)
T ss_pred             EEEecCCCeEEEEeCCCC---------eEEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence            6666554 5777898765         3333322 23345789999998 555 55567999999999987632222221


Q ss_pred             C---C--CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          447 P---K--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       447 ~---~--~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .   +  ......++|+|++++++++.+.++.|.+||+.+++.+...
T Consensus       199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~  245 (300)
T TIGR03866       199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL  245 (300)
T ss_pred             ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            1   1  1123468899999976666666778999999888766543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.6e-20  Score=167.54  Aligned_cols=195  Identities=15%  Similarity=0.244  Sum_probs=152.9

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEEEec
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASA  287 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs~  287 (502)
                      .+.+|++...|.|++||..++..++                           .+.+|...++.++|... +.+.+.+|+.
T Consensus        40 e~~vav~lSngsv~lyd~~tg~~l~---------------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ss   92 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDKGTGQLLE---------------------------EFKGPPATTNGVRFISCDSPHGVISCSS   92 (376)
T ss_pred             ceeEEEEecCCeEEEEeccchhhhh---------------------------eecCCCCcccceEEecCCCCCeeEEecc
Confidence            4679999999999999998754443                           45578888889999764 6789999999


Q ss_pred             CCcEEEEeCCCCeeeEee--ccCC-CCeEEEEEcCCCCcEEEEEeC----CCcEEEEecCCCCC-cc-ceEeecCCeeEE
Q 010748          288 DKQVKIWDVAAGKCNLTL--EHHT-DKVQAVAWNHHSPQILLSGSF----DRSVVMKDARISTH-SG-FKWAVAADVESL  358 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~--~~h~-~~v~~l~~~~~~~~~l~s~s~----dg~i~iwd~~~~~~-~~-~~~~~~~~v~~v  358 (502)
                      ||+|++||++.......+  ..+. .+..|++.+-.+ +++++|+.    +-.|.+||+|..+. +. ....|...|+++
T Consensus        93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l  171 (376)
T KOG1188|consen   93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL  171 (376)
T ss_pred             CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence            999999999987554433  4455 466777777666 77887754    67899999998776 22 234789999999


Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      +|+|..++++++|+.||.|.+||+.....      ...+.....|...|.++.|...+-..|.+-+...+..+|++..+
T Consensus       172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             EecCCCCCeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            99999999999999999999999987632      23444555577789999998766456888888888999987654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.7e-19  Score=174.17  Aligned_cols=236  Identities=20%  Similarity=0.300  Sum_probs=189.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +.+.+.||++-.+|.|.||++...=...+.                         ...+-.+.|-+|+|.+.  ..|+|.
T Consensus        34 s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v-------------------------i~g~~drsIE~L~W~e~--~RLFS~   86 (691)
T KOG2048|consen   34 SHKSNQLAVSRTDGNIEIWNLSNNWFLEPV-------------------------IHGPEDRSIESLAWAEG--GRLFSS   86 (691)
T ss_pred             eccCCceeeeccCCcEEEEccCCCceeeEE-------------------------EecCCCCceeeEEEccC--CeEEee
Confidence            778888999999999999999752222111                         11134578999999965  368999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc--ceEeecCCeeEEEeCCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPH  363 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~  363 (502)
                      +.+|.|.-||+.++++...+....+.|++++.+|.+ ..++.|+.||.+..++........  .+....+.+.++.|+|+
T Consensus        87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~  165 (691)
T KOG2048|consen   87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT  165 (691)
T ss_pred             cCCceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence            999999999999999999999889999999999999 889999999977777776654432  12244688999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce-------EEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-------TLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-------~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      +. .+++|+.||.|++||+.++.         .+.       .+.. ...-|+++.|-.+  ..|++|..-|+|++||..
T Consensus       166 ~~-~i~~Gs~Dg~Iriwd~~~~~---------t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  166 GT-KIAGGSIDGVIRIWDVKSGQ---------TLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSI  233 (691)
T ss_pred             cc-EEEecccCceEEEEEcCCCc---------eEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEccc
Confidence            64 69999999999999999873         222       1111 2234778888754  689999999999999999


Q ss_pred             CCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          436 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      .+.  ++..+..|.+.|.+++..+++.+ +.++|.|+.|..|...++..
T Consensus       234 ~gT--LiqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  234 FGT--LIQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             Ccc--hhhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCcc
Confidence            987  67788889999999999999884 88899999999998877754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=5.7e-21  Score=194.74  Aligned_cols=251  Identities=20%  Similarity=0.315  Sum_probs=193.4

Q ss_pred             cccccccccCCCce----EEEEEecCCcceeEEEEEecC-CCCCCCee---eeeccccCCCcceeeeecCCCCCCC-CCC
Q 010748          140 EDLEDMTINPNDAV----IVCARNEDDVSHLEVYILEES-DGGDPNLY---VHHHIIIPAFPLCMAWLDCPLKDRE-KGN  210 (502)
Q Consensus       140 ~~v~~~~~~p~~~~----l~~~~~~~~~~~l~v~~~~~~-~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~s~-~~~  210 (502)
                      ..-..+.|.+.+..    ||.|..+|   .|.+|.-..- .+....+.   ..|...    .+.+.+       ++ .++
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG---~I~ly~p~~~~~~~~~~~la~~~~h~G~----V~gLDf-------N~~q~n  130 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDG---NIVLYDPASIIANASEEVLATKSKHTGP----VLGLDF-------NPFQGN  130 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCC---ceEEecchhhccCcchHHHhhhcccCCc----eeeeec-------cccCCc
Confidence            34567788877776    55555555   4566655442 11111111   222222    244555       44 577


Q ss_pred             EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~  290 (502)
                      +||+|+.+|.|.|||+...+.-...                         ....-.+.|.+|+|+..-.++||+++.+|.
T Consensus       131 lLASGa~~geI~iWDlnn~~tP~~~-------------------------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~  185 (1049)
T KOG0307|consen  131 LLASGADDGEILIWDLNKPETPFTP-------------------------GSQAPPSEIKCLSWNRKVSHILASGSPSGR  185 (1049)
T ss_pred             eeeccCCCCcEEEeccCCcCCCCCC-------------------------CCCCCcccceEeccchhhhHHhhccCCCCC
Confidence            9999999999999999853321110                         012356789999999998899999999999


Q ss_pred             EEEEeCCCCeeeEeeccCCC--CeEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCccc-eEeecCCeeEEEeCCCC
Q 010748          291 VKIWDVAAGKCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDR---SVVMKDARISTHSGF-KWAVAADVESLAWDPHA  364 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~  364 (502)
                      +.|||++..+.+..+..|..  .+..+.|||+....+++++.|.   .|.+||+|....... ...|...|.++.|++.+
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence            99999999988888866554  4788999999988888888764   689999997665443 45899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ..++++++.|+.|.+|+..++         ..+..+......+..+.|+|..+.++++++.||.|.||.+....
T Consensus       266 ~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  266 PRLLLSSGKDNRIICWNPNTG---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             chhhhcccCCCCeeEecCCCc---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            889999999999999999997         77888888889999999999998999999999999999997754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=8.9e-20  Score=176.38  Aligned_cols=300  Identities=14%  Similarity=0.207  Sum_probs=222.7

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeee--ccccC---CCcceeeeecCCCCCCCCCC
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH--HIIIP---AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~--~~~~~---~~~~~~~~~~~~~~~s~~~~  210 (502)
                      ..|++.|.++.|+|.+..|++++.+.   ++-||.-+...+    +++-.  -..+.   .-.+..-|       +|+++
T Consensus       264 ~GHeDWV~sv~W~p~~~~LLSASaDk---smiiW~pd~~tG----iWv~~vRlGe~gg~a~GF~g~lw-------~~n~~  329 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEGLDLLSASADK---SMIIWKPDENTG----IWVDVVRLGEVGGSAGGFWGGLW-------SPNSN  329 (764)
T ss_pred             cCcccceEEEEEccchhhheecccCc---ceEEEecCCccc----eEEEEEEeecccccccceeeEEE-------cCCCC
Confidence            46999999999999999999999987   566666555442    22111  11111   00122334       78999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~  290 (502)
                      .+++-+..|-.++|.....                        ..........||.+.|.+++|.|.| .+|++.|.|.+
T Consensus       330 ~ii~~g~~Gg~hlWkt~d~------------------------~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQT  384 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTKDK------------------------TFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQT  384 (764)
T ss_pred             EEEEecccCcEEEEeccCc------------------------cceeeccccccccccceeeeecCCC-CEEEEeccccc
Confidence            9999999999999982211                        1122233455899999999999995 59999999999


Q ss_pred             EEEEeCCCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-------------------------
Q 010748          291 VKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-------------------------  341 (502)
Q Consensus       291 v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-------------------------  341 (502)
                      -+|+-.-..    -.+..-+-|...++|+++-+.. ..|++|.....+|+|+...                         
T Consensus       385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~  463 (764)
T KOG1063|consen  385 TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN  463 (764)
T ss_pred             eeeecccccccceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence            999865411    1233335688899999998864 7899999999999988530                         


Q ss_pred             ------------------CCC---------------------------------ccceEeecCCeeEEEeCCCCCCEEEE
Q 010748          342 ------------------STH---------------------------------SGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       342 ------------------~~~---------------------------------~~~~~~~~~~v~~v~~~~~~~~~~~~  370 (502)
                                        +..                                 +..+++|...|.+++.+|++. ++++
T Consensus       464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liAS  542 (764)
T KOG1063|consen  464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIAS  542 (764)
T ss_pred             cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEee
Confidence                              000                                 001234566799999999764 7888


Q ss_pred             EeCCC-----cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEE
Q 010748          371 SLEDG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIA  443 (502)
Q Consensus       371 ~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~  443 (502)
                      ++...     .|++|+..+.         ..+..+..|+-.|+.++|||++ ++|++.|.|.++.+|.......  ....
T Consensus       543 aCKS~~~ehAvI~lw~t~~W---------~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa  612 (764)
T KOG1063|consen  543 ACKSSLKEHAVIRLWNTANW---------LQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFA  612 (764)
T ss_pred             hhhhCCccceEEEEEeccch---------hhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhc
Confidence            76543     5899999886         6677899999999999999998 9999999999999998855321  1122


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--ccccc
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD--AGISN  487 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~--~~~~~  487 (502)
                      ....|..-|+.+.|+|+..| |+|++.|.+|+||.....  +.+.+
T Consensus       613 ~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~  657 (764)
T KOG1063|consen  613 CLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKYISR  657 (764)
T ss_pred             cccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhhhhh
Confidence            36678889999999999997 999999999999999887  44444

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=5.1e-20  Score=160.76  Aligned_cols=253  Identities=20%  Similarity=0.302  Sum_probs=192.5

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      .+.+.|..-    ...+-+||+|+.-    +.|.|-.++.... .                      .... ....|.-+
T Consensus        47 lya~~Ws~~----~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-e----------------------~~~~-a~fd~~YP   98 (364)
T KOG0290|consen   47 LYAMNWSVR----PDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-E----------------------LVED-ANFDHPYP   98 (364)
T ss_pred             eeeeccccC----CCcceeEEEeeeccccCCeeEEEEEccCCC-c----------------------eecc-CCCCCCCC
Confidence            356667432    2246789999853    6777776652110 0                      0000 11368999


Q ss_pred             eeeEEeccCC----CcEEEEEecCCcEEEEeCCC--Cee--eEee-----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 010748          269 VLGLAWNKEF----RNILASASADKQVKIWDVAA--GKC--NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVV  335 (502)
Q Consensus       269 V~~l~~~~~~----~~~l~sgs~dg~v~vwd~~~--~~~--~~~~-----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~  335 (502)
                      ++.+.|.|+.    ..+|||++  ..+++|.+..  .+.  ...+     ..+..++++..|+.-.++++.+++-|-++.
T Consensus        99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT  176 (364)
T KOG0290|consen   99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT  176 (364)
T ss_pred             ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence            9999999983    23666655  3799999873  221  1111     346789999999999999999999999999


Q ss_pred             EEecCCCCC---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE
Q 010748          336 MKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       336 iwd~~~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  412 (502)
                      |||+.++..   ...+..|...|..++|...+...|++.+.||.|++||+|....      ...++.-.....+...++|
T Consensus       177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------STIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------STIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             EEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc------ceEEecCCCCCCcceeecc
Confidence            999998633   4557789999999999998888999999999999999998742      2233333333678899999


Q ss_pred             cCCCCCEEEEEeCCC-cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          413 NPLVPNLLATGSTDK-MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       413 sp~~~~~l~t~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      +++.++++||-..|+ .|.|.|++... ..+..+.+|.+.|+.++|.|..+..|+++|.|..+.+||+..-
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            999999999987765 49999999865 3678899999999999999998878999999999999999753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=1.1e-20  Score=176.19  Aligned_cols=250  Identities=16%  Similarity=0.224  Sum_probs=199.6

Q ss_pred             CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC
Q 010748          128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~  207 (502)
                      -|...++....++-|.++.++|+|+.|++|+.   .++|.||.+.....   .+...-   ..+-|.|-     +++.+|
T Consensus       454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---astlsiWDLAapTp---rikael---tssapaCy-----ALa~sp  519 (705)
T KOG0639|consen  454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---ASTLSIWDLAAPTP---RIKAEL---TSSAPACY-----ALAISP  519 (705)
T ss_pred             CccccccccCcccceeeeEecCCCceEEeccc---cceeeeeeccCCCc---chhhhc---CCcchhhh-----hhhcCC
Confidence            34444555556788999999999999999975   46889998876654   222111   12222332     344489


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      |.++++++..||.|.|||+..                           ......+.+|++.+.||..+++ +..|-+|+-
T Consensus       520 DakvcFsccsdGnI~vwDLhn---------------------------q~~VrqfqGhtDGascIdis~d-GtklWTGGl  571 (705)
T KOG0639|consen  520 DAKVCFSCCSDGNIAVWDLHN---------------------------QTLVRQFQGHTDGASCIDISKD-GTKLWTGGL  571 (705)
T ss_pred             ccceeeeeccCCcEEEEEccc---------------------------ceeeecccCCCCCceeEEecCC-CceeecCCC
Confidence            999999999999999999974                           4455678899999999999999 568999999


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  367 (502)
                      |++|+-||+++++.+.... .++.|.++.++|++ ..|++|-.++.+-+...+....-. ...|.+.|.++.|.+.|. .
T Consensus       572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~kyq-lhlheScVLSlKFa~cGk-w  647 (705)
T KOG0639|consen  572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEKYQ-LHLHESCVLSLKFAYCGK-W  647 (705)
T ss_pred             ccceeehhhhhhhhhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCCcccee-ecccccEEEEEEecccCc-e
Confidence            9999999999998776654 57889999999999 899999999999998887665443 567888999999999876 7


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      |++.+.|..+..|...-+         ..++... ...+|.++.++.+. ++|+||+.|+...||.+
T Consensus       648 fvStGkDnlLnawrtPyG---------asiFqsk-E~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  648 FVSTGKDNLLNAWRTPYG---------ASIFQSK-ESSSVLSCDISFDD-KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeecCchhhhhhccCccc---------cceeecc-ccCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence            888899999999988766         4455444 45779999999987 99999999998888864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.5e-19  Score=159.47  Aligned_cols=290  Identities=12%  Similarity=0.218  Sum_probs=204.6

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      .++++|++-|.+||+|+.+|   .+-||.+.+-.  ...+...|..++    .|++|       |++|++|++++.|..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG---~vvI~D~~T~~--iar~lsaH~~pi----~sl~W-------S~dgr~LltsS~D~si   89 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANG---RVVIYDFDTFR--IARMLSAHVRPI----TSLCW-------SRDGRKLLTSSRDWSI   89 (405)
T ss_pred             cceEEeccCcceeeeeccCC---cEEEEEccccc--hhhhhhccccce----eEEEe-------cCCCCEeeeecCCcee
Confidence            78999999999999999998   44556555433  345555665555    68888       8999999999999999


Q ss_pred             EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee
Q 010748          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC  301 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~  301 (502)
                      .+||+..+..+..+                            ....+|+...|+|...+.+++.-.+..-.+-++..++.
T Consensus        90 ~lwDl~~gs~l~ri----------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h  141 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRI----------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH  141 (405)
T ss_pred             EEEeccCCCceeEE----------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence            99999876544332                            24688999999998777777776666666666665322


Q ss_pred             eEeecc----CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec-CCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          302 NLTLEH----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       302 ~~~~~~----h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      ...-..    .+....+..|.+.| .++++|...|.+.+++..+.+++....... ..|..+.++..+. +|++-+.|..
T Consensus       142 ~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRv  219 (405)
T KOG1273|consen  142 SVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRV  219 (405)
T ss_pred             eeccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCce
Confidence            111110    11222334688888 999999999999999999988776444433 6788899988765 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEe--ccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCeeEEEEecCCC-CcE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNPKA-GAV  452 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~~~-~~v  452 (502)
                      |+.|+++............+.+.++  .....-.+++|+.+| .+++.++ .-..++||.-..+.  ++..+.+.. ...
T Consensus       220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~kgE~l  296 (405)
T KOG1273|consen  220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGS--LVKILHGTKGEEL  296 (405)
T ss_pred             EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcc--eeeeecCCchhhe
Confidence            9999988432110000011111111  112344678899988 5555554 45679999999888  566666665 457


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      ..+.|+|-.+ ++++- ..|.++||....-
T Consensus       297 ~DV~whp~rp-~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  297 LDVNWHPVRP-IIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eeccccccee-eeeec-cCCceEEEEeecc
Confidence            7899999988 36654 7899999987553

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=1.9e-19  Score=159.38  Aligned_cols=247  Identities=17%  Similarity=0.335  Sum_probs=180.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec-------cCC
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-------KEF  278 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-------~~~  278 (502)
                      +|||..|++-+.|..+++|++.........   ++          ...-+...... ......|...+|-       |+ 
T Consensus        58 SPDGSciL~~sedn~l~~~nlP~dlys~~~---~~----------~~~~~~~~~~r-~~eg~tvydy~wYs~M~s~qP~-  122 (406)
T KOG2919|consen   58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKA---DG----------PLNFSKHLSYR-YQEGETVYDYCWYSRMKSDQPS-  122 (406)
T ss_pred             CCCCceEEeecccCeeeEEecChhhcccCC---CC----------ccccccceeEE-eccCCEEEEEEeeeccccCCCc-
Confidence            899999999999999999998632111000   00          00000111111 1234678888886       44 


Q ss_pred             CcEEEEEecCCcEEEEeCCCCeeeEeecc--CCC---CeEEEEEcCCCCcEEEEEeCCCcEEEEec-CCCCCcc------
Q 010748          279 RNILASASADKQVKIWDVAAGKCNLTLEH--HTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDA-RISTHSG------  346 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~--h~~---~v~~l~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~------  346 (502)
                      .+++|+.+.+.-|++||.-+|+...++.+  |..   ...+|+|+|+| ..|++ +..+.|++||+ |.+..-.      
T Consensus       123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhh
Confidence            57999999999999999999998877754  333   44689999999 55654 56789999999 4333211      


Q ss_pred             -ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       347 -~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                       -.++..+-+.|++|+|.....+++|+-...+-||.-...         .+++.+.+|.+.|+.+.|.++| +.|.+|+.
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~edG-n~lfsGaR  270 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCEDG-NKLFSGAR  270 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEeccCc-Ceeccccc
Confidence             122346678999999998889999998888888877665         7889999999999999999999 67777665


Q ss_pred             -CCcEEEEECCCCCeeEEEEecCCCC-cEEEE--EEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          426 -DKMVKLWDLSNNQPSCIASRNPKAG-AVFSV--AFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       426 -dg~i~vwd~~~~~~~~~~~~~~~~~-~v~~~--~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                       +-.|.+||++..+. .+..+..|.+ .-..|  ...|+++ +|++|+.+|.|++||+.+
T Consensus       271 k~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  271 KDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             CCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence             77899999998653 4566666655 33344  4468898 599999999999999987

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=8.6e-20  Score=175.48  Aligned_cols=274  Identities=18%  Similarity=0.344  Sum_probs=205.0

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      .|.+++|.|+|..|+.+..+      ++++|+...+.. ..|..|.+.+     .|++|       +.+|+++|+|+.|.
T Consensus        14 ci~d~afkPDGsqL~lAAg~------rlliyD~ndG~llqtLKgHKDtV-----ycVAy-------s~dGkrFASG~aDK   75 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS------RLLVYDTSDGTLLQPLKGHKDTV-----YCVAY-------AKDGKRFASGSADK   75 (1081)
T ss_pred             chheeEECCCCceEEEecCC------EEEEEeCCCcccccccccccceE-----EEEEE-------ccCCceeccCCCce
Confidence            79999999999988777644      788888776633 3445666655     79999       79999999999999


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|.||+-.....                             ....|.+.|.|+.|+|- .+.|+||+-. ..-+|.....
T Consensus        76 ~VI~W~~klEG~-----------------------------LkYSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK  124 (1081)
T KOG1538|consen   76 SVIIWTSKLEGI-----------------------------LKYSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQK  124 (1081)
T ss_pred             eEEEecccccce-----------------------------eeeccCCeeeEeecCch-HHHhhhcchh-hccccChhhh
Confidence            999998642111                             11269999999999998 6789999874 5788986543


Q ss_pred             eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce--EeecCCeeEEEeCCCCC----CEEEEEeC
Q 010748          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAE----HSFVVSLE  373 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~~~~~----~~~~~~~~  373 (502)
                      . +...+ ....|.+++|..+| ++|+.|-.+|+|.+-+-.........  .+..++|.+++|+|...    ..+++...
T Consensus       125 ~-V~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW  201 (1081)
T KOG1538|consen  125 S-VSKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW  201 (1081)
T ss_pred             h-HHhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec
Confidence            3 22222 35678999999999 99999999999999865443332211  13567899999999632    25666667


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      ..++.+|.+...          .+-.-..-.-...|+.+.++| .+++.|+.|+.+++|--..   ..+-+.......|+
T Consensus       202 ~qTLSFy~LsG~----------~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~G---vrLGTvg~~D~WIW  267 (1081)
T KOG1538|consen  202 GQTLSFYQLSGK----------QIGKDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDG---VRLGTVGEQDSWIW  267 (1081)
T ss_pred             cceeEEEEecce----------eecccccCCCCchhheeccCC-cEEEEccCCCceEEEeecC---eEEeeccccceeEE
Confidence            777777776532          222222334456789999998 8999999999999996443   24555555678899


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          454 SVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       454 ~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +++..|++++ ++.|..||+|.-|++..
T Consensus       268 tV~~~PNsQ~-v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  268 TVQAKPNSQY-VVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEEEccCCce-EEEEEccCeeehhhhHH
Confidence            9999999996 88899999999999854

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=3.4e-20  Score=175.62  Aligned_cols=259  Identities=18%  Similarity=0.222  Sum_probs=190.2

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |++....|++++.+|+|.+|++...                   .....+...+...+.+|.++|.|+++.+. +..+++
T Consensus       302 ~~~sep~lit~sed~~lk~WnLqk~-------------------~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ys  361 (577)
T KOG0642|consen  302 FHPSEPVLITASEDGTLKLWNLQKA-------------------KKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYS  361 (577)
T ss_pred             cCCCCCeEEEeccccchhhhhhccc-------------------CCccccceeeeEEEecccCceEEEEecCC-ceEEEe
Confidence            3677889999999999999999420                   01233446677888999999999999998 669999


Q ss_pred             EecCCcEEEEeCCCC----------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecC
Q 010748          285 ASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAA  353 (502)
Q Consensus       285 gs~dg~v~vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~  353 (502)
                      |+.||+|+.|++...          .....+.||++.|+.+++|+.. ..|++++.||++++|............ ...+
T Consensus       362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g  440 (577)
T KOG0642|consen  362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG  440 (577)
T ss_pred             eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccccC
Confidence            999999999976421          2345678999999999999988 789999999999999988766522111 1223


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-----cCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----HDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      -..++.+-.......++...-+.-.++++.....       ..++...+     ....+..+.++|.. .+.+++..|+.
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-------~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~  512 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-------LLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRS  512 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhhhhhh-------eeeccccCCCcccccCccceEEecCCC-CeeEecccCCc
Confidence            3445555433222333333333333444433211       11111111     12346778888987 89999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      |+++|..++.  .+.....|...++++++.|+|.| |++|+.||.+++|.+....++.....++..+
T Consensus       513 Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k~~~~es~~~r~~~  576 (577)
T KOG0642|consen  513 IRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVKTCVLESTAHRKKP  576 (577)
T ss_pred             eecccccccc--cchheeeccceecceeecCCCce-EEeecCCceeehhhccchheeeccccccccC
Confidence            9999999998  57777788899999999999996 9999999999999999888887777776544

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.83  E-value=7.2e-19  Score=170.18  Aligned_cols=332  Identities=17%  Similarity=0.308  Sum_probs=228.8

Q ss_pred             eeccCCCCCCcccCC-CCCCccccccccccCCCc---eEEEEEecCCcceeEEEEEecCCCCC-----------CCeeee
Q 010748          120 LYYASNQMDPYLKDK-DDEDSEDLEDMTINPNDA---VIVCARNEDDVSHLEVYILEESDGGD-----------PNLYVH  184 (502)
Q Consensus       120 ~~~~~~~~d~~~~~~-~~~~~~~v~~~~~~p~~~---~l~~~~~~~~~~~l~v~~~~~~~~~~-----------~~l~~~  184 (502)
                      -+|... .|.+.... -..|.+.|.++.|...+.   +||+++.+.   +++||.+.......           ++.++.
T Consensus       172 ~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~---yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f  247 (764)
T KOG1063|consen  172 DLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDR---YIRIWRIVLGDDEDSNEREDSLTTLSNLPVF  247 (764)
T ss_pred             EEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCce---EEEEEEEEecCCccccccccccccccCCcee
Confidence            344444 44444332 367999999999986644   555555554   88999876555211           000000


Q ss_pred             ----e-c------ccc---CCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcc-eecCCcchhhhhhc
Q 010748          185 ----H-H------III---PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPH-VILGGIDEEKKKKK  249 (502)
Q Consensus       185 ----~-~------~~~---~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~-~~l~~~~~~~~~~~  249 (502)
                          + .      ..+   ..-...+.|       +|.+..|+++++|.++.||.-+....+... ..+|          
T Consensus       248 ~~l~~i~~~is~eall~GHeDWV~sv~W-------~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlG----------  310 (764)
T KOG1063|consen  248 MILEEIQYRISFEALLMGHEDWVYSVWW-------HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLG----------  310 (764)
T ss_pred             eeeeeEEEEEehhhhhcCcccceEEEEE-------ccchhhheecccCcceEEEecCCccceEEEEEEee----------
Confidence                0 0      000   011234445       788999999999999999988754333221 1111          


Q ss_pred             cccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEE
Q 010748          250 SKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILL  326 (502)
Q Consensus       250 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~  326 (502)
                                 ...+......+.-|+|+ ++.+++-+..|..++|-....   .....+.+|.+.|+.+.|+|.| .+|+
T Consensus       311 -----------e~gg~a~GF~g~lw~~n-~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflL  377 (764)
T KOG1063|consen  311 -----------EVGGSAGGFWGGLWSPN-SNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLL  377 (764)
T ss_pred             -----------cccccccceeeEEEcCC-CCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEE
Confidence                       12245567889999999 578888899999999983321   3444568999999999999999 8999


Q ss_pred             EEeCCCcEEEEecCCCCC----ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCC---------------
Q 010748          327 SGSFDRSVVMKDARISTH----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS---------------  387 (502)
Q Consensus       327 s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~---------------  387 (502)
                      +.+.|.+-|+|-.-..+.    ......|...++|+++-+. +..|++|.+...+|+|+....-.               
T Consensus       378 svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~  456 (764)
T KOG1063|consen  378 SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSD  456 (764)
T ss_pred             EeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCch
Confidence            999999999987652221    1223357778999999874 55799999999999998642100               


Q ss_pred             ------------------CC-C------------------------CC---------CCccceEEeccCCCeeEEEEcCC
Q 010748          388 ------------------DP-D------------------------ST---------SQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       388 ------------------~~-~------------------------~~---------~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                                        .+ .                        ++         ...-+..+.+|...|.+++.+|+
T Consensus       457 ~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~  536 (764)
T KOG1063|consen  457 ELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT  536 (764)
T ss_pred             hcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC
Confidence                              00 0                        00         00112345678899999999999


Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748          416 VPNLLATGSTDK-----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       416 ~~~~l~t~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      + +++|+++...     .|++|+..+..  .+..+.+|.-.|+.++||||++| |++.+.|.++.+|...........|.
T Consensus       537 g-nliASaCKS~~~ehAvI~lw~t~~W~--~~~~L~~HsLTVT~l~FSpdg~~-LLsvsRDRt~sl~~~~~~~~~e~~fa  612 (764)
T KOG1063|consen  537 G-NLIASACKSSLKEHAVIRLWNTANWL--QVQELEGHSLTVTRLAFSPDGRY-LLSVSRDRTVSLYEVQEDIKDEFRFA  612 (764)
T ss_pred             C-CEEeehhhhCCccceEEEEEeccchh--hhheecccceEEEEEEECCCCcE-EEEeecCceEEeeeeecccchhhhhc
Confidence            8 9999988654     38999988876  45678899999999999999997 77789999999999866655444433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=1.3e-18  Score=151.81  Aligned_cols=269  Identities=17%  Similarity=0.253  Sum_probs=193.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCc-----ceeEEEEEecCCCCCC--Ce--eeeeccccCCCcceeeeecCCCCCCC
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDV-----SHLEVYILEESDGGDP--NL--YVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~-----~~l~v~~~~~~~~~~~--~l--~~~~~~~~~~~~~~~~~~~~~~~~s~  207 (502)
                      .+.++|..++-+|.++.|++.......     ...-||.+.+..+..-  .+  ..+-+...-+...|+.|       .|
T Consensus        61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew-------~P  133 (370)
T KOG1007|consen   61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW-------EP  133 (370)
T ss_pred             cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE-------cC
Confidence            467899999999998887776654221     2334555544333100  01  11111111223478998       58


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEEEe
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs  286 (502)
                      ++..||+-. +..|.+|+++........                     .......+|....++-+|+|. .++.+++. 
T Consensus       134 ns~klasm~-dn~i~l~~l~ess~~vae---------------------v~ss~s~e~~~~ftsg~WspHHdgnqv~tt-  190 (370)
T KOG1007|consen  134 NSDKLASMD-DNNIVLWSLDESSKIVAE---------------------VLSSESAEMRHSFTSGAWSPHHDGNQVATT-  190 (370)
T ss_pred             CCCeeEEec-cCceEEEEcccCcchhee---------------------ecccccccccceecccccCCCCccceEEEe-
Confidence            888888776 899999999864432110                     001111236777888999993 45666654 


Q ss_pred             cCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHA  364 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~  364 (502)
                      .|+++..||+++.++...+ ..|...|..+.|+|+...+|++|+.||.|++||+|..+.+. .+..|...|.+|.|+|..
T Consensus       191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence            4689999999998887777 57888999999999998999999999999999999877654 445788899999999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCC--------------------CCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDP--------------------DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~--------------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ..++++|+.|..|.+|....-...+                    .+.....+.++..|...|.+++|+...|-++|+-+
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence            8899999999999999876543200                    00112234567789999999999998899999999


Q ss_pred             CCCcEEEEECC
Q 010748          425 TDKMVKLWDLS  435 (502)
Q Consensus       425 ~dg~i~vwd~~  435 (502)
                      .||.+.|=.+.
T Consensus       351 YDGRviIs~V~  361 (370)
T KOG1007|consen  351 YDGRVIISSVP  361 (370)
T ss_pred             cCceEEeecCC
Confidence            99999886654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=3e-19  Score=170.05  Aligned_cols=230  Identities=20%  Similarity=0.291  Sum_probs=179.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .|.|.+||+|+.||+|+||.+.++.++....                            -.+.|.|++|+|....-++++
T Consensus       409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------------------------~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------------------------FDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             cCCcceeeecCCCCcEEEEEeecceEEEEEe----------------------------ecceeEEEEecCCCCceeEEE
Confidence            6789999999999999999999988776432                            235799999999865544444


Q ss_pred             ecCCcEEEEeCCCC-------------------------------------eeeEeeccCCCCeEEEEEcCCCCcEEEEE
Q 010748          286 SADKQVKIWDVAAG-------------------------------------KCNLTLEHHTDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       286 s~dg~v~vwd~~~~-------------------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  328 (502)
                      +....+.|-+..-|                                     +-++..-.|...|..|.||..| .+|++.
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV  539 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV  539 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence            44444555443211                                     0112233478899999999999 888887


Q ss_pred             eCC---CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC
Q 010748          329 SFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK  405 (502)
Q Consensus       329 s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~  405 (502)
                      ..+   ..|.|+++........+....+.|.++.|+|..+ +|++++ -..|++||+...         ..+..+.....
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kq---------elvKkL~tg~k  608 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQ---------ELVKKLLTGSK  608 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHH---------HHHHHHhcCCe
Confidence            653   5789999987776655556788899999999877 455554 467999999875         66777777888


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .|.+++++|.| .-|+.|+.|+.+..||+.-+. .....+..|...+++++|++.-+ ||++|+.||++.|+-
T Consensus       609 wiS~msihp~G-Dnli~gs~d~k~~WfDldlss-kPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  609 WISSMSIHPNG-DNLILGSYDKKMCWFDLDLSS-KPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH  678 (733)
T ss_pred             eeeeeeecCCC-CeEEEecCCCeeEEEEcccCc-chhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence            99999999998 678889999999999997654 25667788999999999999999 799999999998874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=1.2e-18  Score=158.82  Aligned_cols=307  Identities=20%  Similarity=0.322  Sum_probs=212.4

Q ss_pred             ccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCCCCC--Ce-----eeeeccccCCCcceeeeecCCCCCCCCCC
Q 010748          139 SEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGGDP--NL-----YVHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       139 ~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~~~--~l-----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  210 (502)
                      .+++..+.|++... .|++|+.+.   .+++|..+.......  .+     ..+|+..+    .++.|       +|+|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~---~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aV----N~vRf-------~p~ge   78 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDK---DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAV----NVVRF-------SPDGE   78 (434)
T ss_pred             CCceEEEEeccCcccceecccCcc---ceeeeeeeecCCCCCceeEEEeecccCCccee----EEEEE-------cCCcC
Confidence            35788999998877 999999886   569998876655331  11     12332222    45555       89999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~  290 (502)
                      +||+|+.+|.|.+|..........    ..  .     ....+........+.+|...|..++|+|+ .+++++|+.|.+
T Consensus        79 lLASg~D~g~v~lWk~~~~~~~~~----d~--e-----~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns  146 (434)
T KOG1009|consen   79 LLASGGDGGEVFLWKQGDVRIFDA----DT--E-----ADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNS  146 (434)
T ss_pred             eeeecCCCceEEEEEecCcCCccc----cc--h-----hhhCccceEEEEEecccccchhhhhccCC-Cceeeeeeccce
Confidence            999999999999998763111100    00  0     00111223445566789999999999999 679999999999


Q ss_pred             EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-------------------Ee-
Q 010748          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-------------------WA-  350 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------------------~~-  350 (502)
                      +++||+..|+....+..|...|+.++|.|.+ +++++-+.|...+.+.+...+.....                   .- 
T Consensus       147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfh  225 (434)
T KOG1009|consen  147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFH  225 (434)
T ss_pred             EEEEEeccceeEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeee
Confidence            9999999999999999999999999999999 89999999987777666543221100                   00 


Q ss_pred             ---ecCCeeEEEeCCCCCCEEEEEeC----CC-----cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC---
Q 010748          351 ---VAADVESLAWDPHAEHSFVVSLE----DG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL---  415 (502)
Q Consensus       351 ---~~~~v~~v~~~~~~~~~~~~~~~----dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---  415 (502)
                         ...-...++|+|+|. ++++...    .+     ..++|+-...        .+|...+.....+...+.|+|-   
T Consensus       226 DeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tYvfsrk~l--------~rP~~~lp~~~k~~lavr~~pVy~e  296 (434)
T KOG1009|consen  226 DETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDL--------KRPAARLPSPKKPALAVRFSPVYYE  296 (434)
T ss_pred             cCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeEeeccccc--------cCceeecCCCCcceEEEEeeeeEEE
Confidence               122356678999876 5655421    22     2344544333        3666667766677766666651   


Q ss_pred             --------------CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          416 --------------VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       416 --------------~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                                    .+..+|.++ .+.|.|||..+..|..+ .-.-|-..|+.++|+++|.+ |+..+.||...+--+..
T Consensus       297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~-v~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAV-VDNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             eccccccccccccccceEEEEee-cceEEEeccccccceEE-EeeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcc
Confidence                          012344444 45699999998876444 33557789999999999995 77789999887777766


Q ss_pred             Ccc
Q 010748          482 DAG  484 (502)
Q Consensus       482 ~~~  484 (502)
                      .++
T Consensus       374 ~el  376 (434)
T KOG1009|consen  374 WEL  376 (434)
T ss_pred             hhc
Confidence            554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.6e-18  Score=173.27  Aligned_cols=304  Identities=18%  Similarity=0.276  Sum_probs=204.3

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeec-cccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      -..+.|+|-...++++....   .+.||.|+...    .+...+. ..-......++.++     ..+..++++|+.||.
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~---~i~vwd~e~~~----~l~~F~n~~~~~t~Vs~l~liN-----e~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRE---RIRVWDWEKGR----LLNGFDNGAFPDTRVSDLELIN-----EQDDALLLTASSDGV 1134 (1387)
T ss_pred             CceeeecCCCceeEEcCCcc---eEEEEecccCc----eeccccCCCCCCCccceeeeec-----ccchhheeeeccCce
Confidence            45678899988888886333   67788877665    2333332 22223334444442     246789999999999


Q ss_pred             EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~  300 (502)
                      |+||+-.-..-..+..+.+-               ..+.....+-.+.=.-+.|....++ |++++.-..|+|||+...+
T Consensus      1135 IRIwk~y~~~~~~~eLVTaw---------------~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAW---------------SSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred             EEEecccccccCCceeEEee---------------ccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccce
Confidence            99997432110011000000               0000011111122245679888664 4455556899999999888


Q ss_pred             eeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---ccceEeecCC--eeEEEeCCCCCCEEEEEeCC
Q 010748          301 CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAAD--VESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       301 ~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~--v~~v~~~~~~~~~~~~~~~d  374 (502)
                      ++..+. +....|+++.-+-..++++++|..||.|++||.|....   +.....|...  |..+.+.+.|-..+++|+.+
T Consensus      1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred             eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence            887774 34557788876655568999999999999999997654   2223355555  99999999776679999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccC--C-CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe----cC
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--K-AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR----NP  447 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~--~-~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~----~~  447 (502)
                      |.|++||+|...       ......+..|-  + .++++..+++. ..+|+|+. +.|+||++...+...+...    ..
T Consensus      1279 G~I~~~DlR~~~-------~e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q 1349 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSS-------KETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQ 1349 (1387)
T ss_pred             CeEEEEecccCc-------ccccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccC
Confidence            999999999852       23344444443  3 48999999987 88999988 9999999976553222211    12


Q ss_pred             CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      ..+.+.|++|+|-.. +||+|..|.+|.||......
T Consensus      1350 ~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCCCcceeeecchhH-hhhhccCCceEEEeecCCcC
Confidence            346789999999987 69999999999999876543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=2.4e-18  Score=156.27  Aligned_cols=231  Identities=19%  Similarity=0.294  Sum_probs=174.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      +.+.|.++      +.+.||+|+.|.+|.||.+.......+                    ...+...+.+|...|--++
T Consensus        85 LDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~--------------------ltepvv~L~gH~rrVg~V~  138 (472)
T KOG0303|consen   85 LDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRD--------------------LTEPVVELYGHQRRVGLVQ  138 (472)
T ss_pred             cccccCcc------CCceeecCCCCceEEEEECCCcccccC--------------------cccceEEEeecceeEEEEe
Confidence            67888643      788999999999999999964332221                    1344556779999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      |+|...+.|+|++.|.+|.+|++.+|..+.++. |.+.|+++.|+.+| .+|++++.|..|+|||.|+++.......|.+
T Consensus       139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG  216 (472)
T KOG0303|consen  139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG  216 (472)
T ss_pred             ecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccC
Confidence            999999999999999999999999999998888 99999999999999 8999999999999999999987765545543


Q ss_pred             -CeeEEEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccc-eEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          354 -DVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSS-FTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       354 -~v~~v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                       ....+.|-.++. ++.+|.   .+..+.+||..+..        .++ ..-...+..|.---|.++..-+.++|-.|+.
T Consensus       217 ~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~--------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  217 AKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLE--------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             CCcceeEEeccCc-eeeeccccccccceeccCccccc--------CcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence             456677777665 555553   56789999988773        332 2222334556666788887444455666999


Q ss_pred             EEEEECCCCCeeE--EEEecCCCCcEEEEEEcCCCC
Q 010748          429 VKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       429 i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~spd~~  462 (502)
                      ||.|.+....|..  +.++. ...+-..+.|-|...
T Consensus       288 IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKRG  322 (472)
T KOG0303|consen  288 IRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKRG  322 (472)
T ss_pred             eEEEEecCCCceeEEecccc-cCCcccccccccccc
Confidence            9999998876421  22222 234556677777653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=153.21  Aligned_cols=206  Identities=19%  Similarity=0.243  Sum_probs=160.0

Q ss_pred             ccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 010748          260 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV  334 (502)
Q Consensus       260 ~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i  334 (502)
                      ..+.+|...|++++|+.+ +.+||+++.|++|+||+++.-     ++++.- -.-+..+.+.|.|+-..++++.-...++
T Consensus        80 ~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEE
Confidence            457899999999999999 569999999999999998753     222211 1123567899999997777777778899


Q ss_pred             EEEecCCCCC---c--cce-------EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec
Q 010748          335 VMKDARISTH---S--GFK-------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       335 ~iwd~~~~~~---~--~~~-------~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                      ++|.+...+-   .  ...       ..|.-.+..+-... +..++++++.|..|.+|+++ +         +.+..+..
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G---------q~L~~idt  226 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G---------QLLQSIDT  226 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C---------ceeeeecc
Confidence            9998754321   1  111       12334455555554 45589999999999999999 3         66777777


Q ss_pred             cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC------CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~v  476 (502)
                      ....-+..+.||+| ++|++++.---|+||.+--.      ....++.+.+|...|..++|+|+.. .+++.+.||+++|
T Consensus       227 nq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wri  304 (420)
T KOG2096|consen  227 NQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRI  304 (420)
T ss_pred             ccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEE
Confidence            77777888999998 99999999888999986322      2345788899999999999999998 5999999999999


Q ss_pred             EECC
Q 010748          477 WDTL  480 (502)
Q Consensus       477 wd~~  480 (502)
                      ||+.
T Consensus       305 wdtd  308 (420)
T KOG2096|consen  305 WDTD  308 (420)
T ss_pred             eecc
Confidence            9984

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.6e-18  Score=158.99  Aligned_cols=238  Identities=13%  Similarity=0.193  Sum_probs=187.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|...+|++++.|+.++||.++..                         .......+.-...+|.+..|.|+|...++++
T Consensus       222 Hp~~plllvaG~d~~lrifqvDGk-------------------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s  276 (514)
T KOG2055|consen  222 HPTAPLLLVAGLDGTLRIFQVDGK-------------------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS  276 (514)
T ss_pred             cCCCceEEEecCCCcEEEEEecCc-------------------------cChhheeeeeccCccceeeecCCCceEEEec
Confidence            788999999999999999999741                         1122223333567899999999976699999


Q ss_pred             ecCCcEEEEeCCCCeeeE--eeccCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          286 SADKQVKIWDVAAGKCNL--TLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~--~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      +....++.||+.+.+...  .+.++. ..+.....++++ ++|+..+..|.|.+....+...+. .+...+.|..++|+.
T Consensus       277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~-s~KieG~v~~~~fsS  354 (514)
T KOG2055|consen  277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT-SFKIEGVVSDFTFSS  354 (514)
T ss_pred             ccceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh-eeeeccEEeeEEEec
Confidence            999999999999886533  333443 356677889999 899999999999999998887665 677889999999998


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC----C
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN----N  437 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~----~  437 (502)
                      ++. .+++++.+|.|.+||++..         .++..+.... -.-++++.++++ .+||+|+..|.|.|||..+    .
T Consensus       355 dsk-~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  355 DSK-ELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAST  423 (514)
T ss_pred             CCc-EEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccC
Confidence            875 7888888999999999986         4555554321 134667778887 8999999999999999654    4


Q ss_pred             CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCC
Q 010748          438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSD  482 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~--dg~i~vwd~~~~  482 (502)
                      .|.++..+..-...|++++|+|+.+ +||.++.  +..+++-.+.+.
T Consensus       424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~  469 (514)
T KOG2055|consen  424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC  469 (514)
T ss_pred             CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce
Confidence            5567777777788999999999998 6776665  457888777654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=3.3e-18  Score=160.94  Aligned_cols=280  Identities=16%  Similarity=0.252  Sum_probs=191.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      -|.+-|.++.++.+...+.++...      .+..+............   .+-..+|..+--.+...+.......|+.++
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh------~~~~~~~~~~~s~~~~~---~p~df~pt~~h~~~rs~~~g~~~d~~~i~s   82 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDH------QIFKWSDVSRDSVEVAK---LPDDFVPTDMHLGGRSSGGGKGSDTLLICS   82 (737)
T ss_pred             ccceeEEeecccccceEEEeccCc------eEEEeecccchhhhhhh---CCcccCCccccccccccCCCCCcceEEEEc
Confidence            356677788888888777766433      33333322211101111   011112222211111111123456788999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .||.+.|.+-.                            .+.......|.++|.|-.|+|+ +.-|++++.||.|++|. 
T Consensus        83 ~DGkf~il~k~----------------------------~rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWS-  132 (737)
T KOG1524|consen   83 NDGRFVILNKS----------------------------ARVERSISAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWS-  132 (737)
T ss_pred             CCceEEEeccc----------------------------chhhhhhhhhhhhhhhcccCCC-CceeeeecCCceEEEEe-
Confidence            99999887632                            2333345589999999999999 45888999999999998 


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      ++|-...++.....+|.|++|.|+..+.+++.+  +.+.+=-+.....+..-..|.+-|.++.|++.+. ++++|++|-.
T Consensus       133 rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~k  209 (737)
T KOG1524|consen  133 RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFR  209 (737)
T ss_pred             ccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCcee
Confidence            667666666666789999999999977777654  5666666665555543447888899999999754 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      .++||..          +.+++....|..+|++++|+|+  ..++.+|.. ++|             --.+..|.|+.++
T Consensus       210 fKvWD~~----------G~~Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R-------------~~~p~~GSifnls  263 (737)
T KOG1524|consen  210 FKIWDAQ----------GANLFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR-------------FSSPRVGSIFNLS  263 (737)
T ss_pred             EEeeccc----------CcccccCChhccceeeeeeccc--cceeeeeee-eee-------------ecCCCccceEEEE
Confidence            9999987          3678888999999999999996  455555432 233             1234568899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      ||+||.. +++|...|.+.+=-+-....+
T Consensus       264 WS~DGTQ-~a~gt~~G~v~~A~~ieq~l~  291 (737)
T KOG1524|consen  264 WSADGTQ-ATCGTSTGQLIVAYAIEQQLV  291 (737)
T ss_pred             EcCCCce-eeccccCceEEEeeeehhhhh
Confidence            9999995 888888887766444333333

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=1.2e-18  Score=166.89  Aligned_cols=260  Identities=15%  Similarity=0.229  Sum_probs=191.5

Q ss_pred             CCCCCEEEE--ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          206 REKGNFMAV--GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       206 s~~~~~la~--g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      ..+..++|+  .+..|.|-||+++....+..-                     .+-..  -....|+.+.|.|-....||
T Consensus       588 can~~rvAVPL~g~gG~iai~el~~PGrLPDg---------------------v~p~l--~Ngt~vtDl~WdPFD~~rLA  644 (1012)
T KOG1445|consen  588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDG---------------------VMPGL--FNGTLVTDLHWDPFDDERLA  644 (1012)
T ss_pred             eeccceEEEEecCCCceEEEEEcCCCCCCCcc---------------------ccccc--ccCceeeecccCCCChHHee
Confidence            345666665  455699999999753322110                     00011  23467999999998888999


Q ss_pred             EEecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCee
Q 010748          284 SASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       284 sgs~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  356 (502)
                      .++.||.|++|.+..+       .+-..+..|..+|+++.|||-...+|+++++|-+|++||+++......+.+|...|.
T Consensus       645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf  724 (1012)
T KOG1445|consen  645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF  724 (1012)
T ss_pred             ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence            9999999999998754       345677889999999999999889999999999999999999988888889999999


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEEeCCC----cEEE
Q 010748          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDK----MVKL  431 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg----~i~v  431 (502)
                      .++|+|+|. .+++.+.||+|++|..++.        ..+++.-.+.. ..-..|.|.-+| +++++.+.|.    +|.+
T Consensus       725 ~~AWSpdGr-~~AtVcKDg~~rVy~Prs~--------e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~  794 (1012)
T KOG1445|consen  725 GIAWSPDGR-RIATVCKDGTLRVYEPRSR--------EQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQM  794 (1012)
T ss_pred             EEEECCCCc-ceeeeecCceEEEeCCCCC--------CCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhh
Confidence            999999876 7999999999999999987        35555444332 233567788887 7777776654    5889


Q ss_pred             EECCCCCeeEEEEecCCCC-cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCCCC
Q 010748          432 WDLSNNQPSCIASRNPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKP  498 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~-~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  498 (502)
                      ||..+-....+.+...... .+.--.+.+|...+|++|-.|..|.+|.+.-.....-.+.++..+...
T Consensus       795 Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~h  862 (1012)
T KOG1445|consen  795 YDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGH  862 (1012)
T ss_pred             hhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcc
Confidence            9887644223332221111 122234567777789999999999999998777665555555554443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.2e-16  Score=159.64  Aligned_cols=297  Identities=24%  Similarity=0.432  Sum_probs=210.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCC-EEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~la~  214 (502)
                      ..+...+..+.+.+.+..++.++.++   .+.+|.+.........+..++...+    ..+.+     . ++++. +++.
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~-~~~~~~~~~~  128 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDG---TIKLWDLDNGEKLIKSLEGLHDSSV----SKLAL-----S-SPDGNSILLA  128 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCC---cEEEEEcCCCceeEEEEeccCCCce----eeEEE-----E-CCCcceEEec
Confidence            34778899999999999999998665   4566665544310111112121011    11111     1 24555 5555


Q ss_pred             e-cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec-CCcEE
Q 010748          215 G-SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVK  292 (502)
Q Consensus       215 g-~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-dg~v~  292 (502)
                      . ..++.+.+|++...                          ......+..|...|.+++|+|++. .+++++. ++.++
T Consensus       129 ~~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~  181 (466)
T COG2319         129 SSSLDGTVKLWDLSTP--------------------------GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIK  181 (466)
T ss_pred             cCCCCccEEEEEecCC--------------------------CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceE
Confidence            4 44899999998740                          122334557999999999999955 7777775 99999


Q ss_pred             EEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCCCCEEEEE
Q 010748          293 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       293 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~  371 (502)
                      +|++..+..+..+.+|...|.+++|+|++..++++++.|+.|++||.+...... ....+.... ...|+|++ .+++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~  259 (466)
T COG2319         182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASG  259 (466)
T ss_pred             EEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEe
Confidence            999999899999999999999999999884355566999999999888554444 233444443 33899987 578899


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       372 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      +.++.+++|+++...        ..+..+..|...+.++.|+|.+ ..+++++.|+.+++|++.............|...
T Consensus       260 ~~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  330 (466)
T COG2319         260 SSDGTIRLWDLRSSS--------SLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP  330 (466)
T ss_pred             cCCCcEEEeeecCCC--------cEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc
Confidence            999999999999762        2234446789999999999976 6677788898899999888764333333467778


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       452 v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +..+.|.+++..++.++..++.+.+|++....
T Consensus       331 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             eEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            99999943324334443678899999998876

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=3.1e-17  Score=140.04  Aligned_cols=243  Identities=17%  Similarity=0.232  Sum_probs=173.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|.+++|++|+.+|.|.+..+.......                 .+.+.+.+...+++|..+|+.++|+.+   +|++|
T Consensus        19 sp~~~~l~agn~~G~iav~sl~sl~s~s-----------------a~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~   78 (325)
T KOG0649|consen   19 SPSKQYLFAGNLFGDIAVLSLKSLDSGS-----------------AEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSG   78 (325)
T ss_pred             CCcceEEEEecCCCeEEEEEehhhhccc-----------------cCCCCCcceeeccccCCCeeeeeeehh---heeec
Confidence            7899999999999999999987543221                 122234445556899999999999954   67777


Q ss_pred             ecCCcEEEEeCCCC------eeeEee--ccCC-----CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748          286 SADKQVKIWDVAAG------KCNLTL--EHHT-----DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       286 s~dg~v~vwd~~~~------~~~~~~--~~h~-----~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      +. |.|+-|..+..      +.+...  ..|.     -.|++|...|..+. ++.++.|+.++-||+.+++......+|.
T Consensus        79 gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen   79 GD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             cC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence            65 99999876532      111111  1222     36889999999844 5555589999999999999988888999


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      .-+.++.-...++ .+++|++||++++||+++.+........+....+..| ...|-+++.+.   .+|++|+. ..+.+
T Consensus       157 DYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGgG-p~lsl  231 (325)
T KOG0649|consen  157 DYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGGG-PKLSL  231 (325)
T ss_pred             ceeeeeeecccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecCC-CceeE
Confidence            9999998844333 6999999999999999998543222211222222223 24567777663   67777764 46999


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      |.++..++.+++.+++|   +..+.|..+   .++++|..+.|.-|.+..
T Consensus       232 whLrsse~t~vfpipa~---v~~v~F~~d---~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  232 WHLRSSESTCVFPIPAR---VHLVDFVDD---CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             EeccCCCceEEEecccc---eeEeeeecc---eEEEeccccceeeeeecc
Confidence            99999998888887754   777788776   355677777788887743

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=3.2e-18  Score=161.46  Aligned_cols=230  Identities=23%  Similarity=0.320  Sum_probs=172.8

Q ss_pred             ccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEE
Q 010748          260 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMK  337 (502)
Q Consensus       260 ~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iw  337 (502)
                      ..+.||++.|+||.|+.+ +.+|+|||.|-.+.|||.-..+.++.+ .+|...|.|+.|-|.. ..++++|..|..|++|
T Consensus        44 ~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            356799999999999999 569999999999999999988888888 6899999999999854 3688999999999999


Q ss_pred             ecCCCC----------CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCC-CCccceEEeccCCC
Q 010748          338 DARIST----------HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST-SQQSSFTLHAHDKA  406 (502)
Q Consensus       338 d~~~~~----------~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~~~~~~h~~~  406 (502)
                      |+...+          .......|...|..++-.|.+++.|.++++||+|+-||+|......... ....+..+...--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            998522          1222235677888999999999999999999999999999863211110 01111122222245


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------------eEEEEe-cCCC-----------CcEEEEEEc
Q 010748          407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------------SCIASR-NPKA-----------GAVFSVAFS  458 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------------~~~~~~-~~~~-----------~~v~~~~~s  458 (502)
                      ..|+.++|..+.+|+.|+.|-..++||.+...+                .++..+ .+|.           ..++-+.|+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            678999999999999999999999999543110                012111 1221           125678899


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          459 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       459 pd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      |+|.-+|++-+.+ .|+++|+..++.....+..
T Consensus       283 pNGtElLvs~~gE-hVYlfdvn~~~~~~~y~~~  314 (758)
T KOG1310|consen  283 PNGTELLVSWGGE-HVYLFDVNEDKSPTPYFLP  314 (758)
T ss_pred             CCCcEEEEeeCCe-EEEEEeecCCCCceeecCc
Confidence            9998777765554 7999999998887776655

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1e-17  Score=149.68  Aligned_cols=199  Identities=17%  Similarity=0.255  Sum_probs=157.7

Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEecCCCCCccce-Eee--cCCe
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFK-WAV--AADV  355 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~--~~~v  355 (502)
                      +.+|++...|+|++||..+++.+..|+++...+..+.|... +++.+.+++.||+|++||+|........ +..  +.+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            57888888999999999999999999999999999999874 6689999999999999999987655432 222  2356


Q ss_pred             eEEEeCCCCCCEEEEEe----CCCcEEEEECCCCCCCCCCCCCccceE-EeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          356 ESLAWDPHAEHSFVVSL----EDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      .|++.+-. .+++++|+    .+-.|.+||+|...        +++.. ...|..-|++++|+|..+++|++||.||.|.
T Consensus       121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~q--------q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn  191 (376)
T KOG1188|consen  121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQ--------QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN  191 (376)
T ss_pred             eEeeccCc-CCeEEeccccccCceEEEEEEecccc--------chhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence            67766543 34677774    46689999999873        43333 4679999999999999999999999999999


Q ss_pred             EEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          431 LWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       431 vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      |||+..... -.+.....+...|.++.|..++--.|.+-+..++..+|++..+.+...
T Consensus       192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~  249 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW  249 (376)
T ss_pred             eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence            999976421 123333456778999999998833477788899999999999886543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=3.8e-18  Score=161.86  Aligned_cols=270  Identities=19%  Similarity=0.299  Sum_probs=188.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCCeeeeec-cccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      .|.+.|.++.|+|....|++|+.++   .|++|.+...... ...+..++. ....+..+|+..       ++++..+.+
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~---~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-------~~n~~~~ys  361 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDG---TLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-------PSNGEHCYS  361 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEecccc---chhhhhhcccCCccccceeeeEEEecccCceEEEEe-------cCCceEEEe
Confidence            4678899999999999999999886   7899998321110 001111111 111233377765       688999999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      |+-||+|+.|++...  ..|.               ...........+.||++.|+.+++++. ...|++|+.||+|++|
T Consensus       362 gg~Dg~I~~w~~p~n--~dp~---------------ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w  423 (577)
T KOG0642|consen  362 GGIDGTIRCWNLPPN--QDPD---------------DSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLW  423 (577)
T ss_pred             eccCceeeeeccCCC--CCcc---------------cccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEee
Confidence            999999999988621  1111               111223445577899999999999998 6789999999999999


Q ss_pred             eCCCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-------eecCCeeEEEeCCCCC
Q 010748          295 DVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHAE  365 (502)
Q Consensus       295 d~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~  365 (502)
                      +.....+ .+|..  ..+..+++.+-.......++...-+.-.++++........+.       .....+..+.++|..+
T Consensus       424 ~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~  502 (577)
T KOG0642|consen  424 EPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD  502 (577)
T ss_pred             ccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence            9876655 44422  223345566654443344444444444444444333222111       1124578889999775


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~  445 (502)
                       +.+++..++.|+++|..++         .++....+|...++++++.|+| -+|++++.|+.+++|.+....  ++...
T Consensus       503 -~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~--~~~es  569 (577)
T KOG0642|consen  503 -ITFTAHEDRSIRFFDNKTG---------KILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT--CVLES  569 (577)
T ss_pred             -eeEecccCCceeccccccc---------ccchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh--eeecc
Confidence             8999999999999999997         8899999999999999999998 899999999999999987665  55554


Q ss_pred             cCC
Q 010748          446 NPK  448 (502)
Q Consensus       446 ~~~  448 (502)
                      ..|
T Consensus       570 ~~~  572 (577)
T KOG0642|consen  570 TAH  572 (577)
T ss_pred             ccc
Confidence            444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.78  E-value=7.3e-18  Score=161.51  Aligned_cols=213  Identities=18%  Similarity=0.303  Sum_probs=159.4

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .+.+.|-+|      |...||+++.||.|++|.+......++.                    ......+..|...|++|
T Consensus       630 vtDl~WdPF------D~~rLAVa~ddg~i~lWr~~a~gl~e~~--------------------~tPe~~lt~h~eKI~sl  683 (1012)
T KOG1445|consen  630 VTDLHWDPF------DDERLAVATDDGQINLWRLTANGLPENE--------------------MTPEKILTIHGEKITSL  683 (1012)
T ss_pred             eeecccCCC------ChHHeeecccCceEEEEEeccCCCCccc--------------------CCcceeeecccceEEEE
Confidence            356677544      7889999999999999999765544332                    33444667899999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE--e
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--A  350 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~  350 (502)
                      .|+|-..++|++++.|-+|++||+.+++....+.+|++.|..++|+|+| +.+++.+.||+|++|..++........  .
T Consensus       684 RfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp  762 (1012)
T KOG1445|consen  684 RFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYEGKGP  762 (1012)
T ss_pred             EecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCccccCCCC
Confidence            9999988899999999999999999999999999999999999999999 999999999999999998866543211  1


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccceEEeccCC-CeeEEEEcCCCCCEEEEEeCC
Q 010748          351 VAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ....-..+.|.-++..++++|.   ....|.+||..+...       .++.+...... .+.--.+.++.+.+++||-.|
T Consensus       763 vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-------~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD  835 (1012)
T KOG1445|consen  763 VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-------RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGD  835 (1012)
T ss_pred             ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-------CcceeeeecccCccccccccCCCceEEEecCCC
Confidence            2334456778777775555553   345688898877531       33333322111 122224555665788999999


Q ss_pred             CcEEEEECCCCCe
Q 010748          427 KMVKLWDLSNNQP  439 (502)
Q Consensus       427 g~i~vwd~~~~~~  439 (502)
                      ..|.+|.+-...+
T Consensus       836 ~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  836 RFVNMYEVIYESP  848 (1012)
T ss_pred             ceEEEEEecCCCc
Confidence            9999999876654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=5.7e-17  Score=147.13  Aligned_cols=294  Identities=14%  Similarity=0.204  Sum_probs=210.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC----CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      -+|.+-|+++.|+.++++||+|+.+.   ++.||..+...-    ....+..||.   .+-.+|+++       .....+
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~---~~~~W~~de~~~~k~~KPI~~~~~~H---~SNIF~L~F-------~~~N~~  119 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDM---HGRVWNVDELMVRKTPKPIGVMEHPH---RSNIFSLEF-------DLENRF  119 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcc---eeeeechHHHHhhcCCCCceeccCcc---ccceEEEEE-------ccCCee
Confidence            46889999999999999999998765   667776653221    1122333332   233378877       456788


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      |.+|+.+++|.+-|+.+.+.+...                         ......+.|+.+..+|. .+.|++.+.++.|
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~-------------------------~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V  173 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVA-------------------------NENNNRGDVYHMDQHPT-DNTLIVVTRAKLV  173 (609)
T ss_pred             EecCCCcceeEeeecccceeeeee-------------------------cccCcccceeecccCCC-CceEEEEecCceE
Confidence            999999999999999864433211                         11123459999999999 7899999999999


Q ss_pred             EEEeCCCCe-eeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE----eecC---CeeEEEeC
Q 010748          292 KIWDVAAGK-CNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAA---DVESLAWD  361 (502)
Q Consensus       292 ~vwd~~~~~-~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~---~v~~v~~~  361 (502)
                      .+||.+..+ ...  .+........++.|+|..+.+|++.+..+-+.+||+|.+.......    ..+.   .-..+.|+
T Consensus       174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~  253 (609)
T KOG4227|consen  174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS  253 (609)
T ss_pred             EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence            999998654 222  2233456788999999999999999999999999999876554322    2222   23678899


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-cc-----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h-----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      |.|. .|++-.....-.+||+-+..        .+++.+. ..     ...+.+++|.-+  ..+++|+.+-.|++|.+.
T Consensus       254 ~~G~-Q~msiRR~~~P~~~D~~S~R--------~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  254 PSGN-QFMSIRRGKCPLYFDFISQR--------CFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLP  322 (609)
T ss_pred             CCCC-eehhhhccCCCEEeeeeccc--------ceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecC
Confidence            9876 56665555666778887641        3333333 11     123566777754  569999999999999875


Q ss_pred             CCC---------------------eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          436 NNQ---------------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       436 ~~~---------------------~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      ...                     ...+..+.+|..-+..+.|+|... +|+++|-...++||.-.
T Consensus       323 ~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  323 RANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDH  387 (609)
T ss_pred             CCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc-eEeccchhhheeccccc
Confidence            310                     013456778999999999999876 79999999999999754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=1.7e-17  Score=143.21  Aligned_cols=290  Identities=16%  Similarity=0.233  Sum_probs=190.1

Q ss_pred             CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC
Q 010748          128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~  207 (502)
                      ||+..+.  .|...|+++.|..+++ |.+|...|   .+.+|.+..... ...+..++.       .++.|+..    -|
T Consensus         5 dP~fvLR--p~~~~v~s~~fqa~~r-L~sg~~~G---~V~~w~lqt~r~-~~~~r~~g~-------~~it~lq~----~p   66 (323)
T KOG0322|consen    5 DPFFVLR--PHSSSVTSVLFQANER-LMSGLSVG---IVKMWVLQTERD-LPLIRLFGR-------LFITNLQS----IP   66 (323)
T ss_pred             CCeeEec--cccchheehhhccchh-hhcccccc---eEEEEEeecCcc-chhhhhhcc-------ceeeceee----cC
Confidence            5655554  4778999999999998 66676555   789999987654 111222332       45566543    23


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                       +..|.+-+.|+.+.+|++.-....                              .-|.-.++++-|.+.   -+...+.
T Consensus        67 -~d~l~tqgRd~~L~lw~ia~s~~i------------------------------~i~Si~~nslgFCrf---Sl~~~~k  112 (323)
T KOG0322|consen   67 -NDSLDTQGRDPLLILWTIAYSAFI------------------------------SIHSIVVNSLGFCRF---SLVKKPK  112 (323)
T ss_pred             -CcchhhcCCCceEEEEEccCcceE------------------------------EEeeeeccccccccc---eeccCCC
Confidence             367888889999999999742211                              124444555555443   1111111


Q ss_pred             CC-c-----------EEEEeCCCCeeeEee----ccCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCc----
Q 010748          288 DK-Q-----------VKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS----  345 (502)
Q Consensus       288 dg-~-----------v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~----  345 (502)
                      .. .           +.+-|......+...    .+..+.+.|..|.....  -+|++|..+|.+.+||+.++...    
T Consensus       113 ~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~  192 (323)
T KOG0322|consen  113 NSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP  192 (323)
T ss_pred             cchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc
Confidence            10 1           222222222222211    12346777777543322  35678888999999999986322    


Q ss_pred             ------cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          346 ------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       346 ------~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                            .....|..+|.++.+.+... .=++|+.+..+..|.+......     -+....+....-.|..+.+-|++ +.
T Consensus       193 ~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gs-----lq~~~e~~lknpGv~gvrIRpD~-KI  265 (323)
T KOG0322|consen  193 QSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGS-----LQIRKEITLKNPGVSGVRIRPDG-KI  265 (323)
T ss_pred             cccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCc-----ccccceEEecCCCccceEEccCC-cE
Confidence                  22335788899999987533 3566677777888888654211     01222233334568899999998 99


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      +||++.|+.||||+.++.++  +..+..|.+.|++++|+|+.. ++|+++.|++|.+|++
T Consensus       266 lATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  266 LATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             EeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence            99999999999999999985  555667889999999999987 7999999999999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.8e-17  Score=147.62  Aligned_cols=244  Identities=15%  Similarity=0.193  Sum_probs=181.1

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      ||.++++||+|+.|..+++|+++..-                    .++..+.+...-..|...|.||+|+.. ..+|++
T Consensus        64 FS~N~~~L~SGGDD~~~~~W~~de~~--------------------~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~S  122 (609)
T KOG4227|consen   64 FSHNDRFLASGGDDMHGRVWNVDELM--------------------VRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYS  122 (609)
T ss_pred             eccCCeEEeecCCcceeeeechHHHH--------------------hhcCCCCceeccCccccceEEEEEccC-CeeEec
Confidence            38889999999999999999986310                    001112222233457789999999987 569999


Q ss_pred             EecCCcEEEEeCCCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce---EeecCCeeEEE
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLA  359 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~  359 (502)
                      |..+++|.+.|+.+.+.+..+..  ..+.|+.+..+|.. +.|++.+.++.|.+||.|........   ........++.
T Consensus       123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             CCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence            99999999999999988877752  23589999999997 99999999999999999976632222   23456688999


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      |+|..+.++++.+..+-+.+||.|...        .++......      ...-.++.|+|+| +.|++.-.-..-.+||
T Consensus       202 F~P~~P~Li~~~~~~~G~~~~D~R~~~--------~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D  272 (609)
T KOG4227|consen  202 FHPETPALILVNSETGGPNVFDRRMQA--------RPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFD  272 (609)
T ss_pred             ecCCCceeEEeccccCCCCceeecccc--------chHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEee
Confidence            999999999999999999999999873        344333221      2233678899998 5565555555667889


Q ss_pred             CCCCCeeEEEEecCC------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          434 LSNNQPSCIASRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~------~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      +-+.+. .++.+...      ...+.+++|..+..  +++|+.+-.|++|.+...
T Consensus       273 ~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  273 FISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             eecccc-eeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCC
Confidence            887653 34443311      23467888887764  899999999999998543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.8e-16  Score=155.12  Aligned_cols=308  Identities=16%  Similarity=0.201  Sum_probs=201.9

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      -..+.+.+.+.+.+......    +.+|.......  .......||...    ..|.+.       ||+++++|+|..||
T Consensus       163 ~~~I~~~~~ge~~~i~~~~~----~~~~~v~~~~~~~~~~~~~~~Htf~----~t~~~~-------spn~~~~Aa~d~dG  227 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMCK----IHIYFVPKHTKHTSSRDITVHHTFN----ITCVAL-------SPNERYLAAGDSDG  227 (792)
T ss_pred             CccEEEcCCceEEEEEEeee----EEEEEecccceeeccchhhhhhccc----ceeEEe-------ccccceEEEeccCC
Confidence            56788899999888887663    34444444221  111223455433    244443       89999999999999


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|.+|.--..                       .........+.-|...|++++|+++| .+|+||+..|.+.+|.+.++
T Consensus       228 rI~vw~d~~~-----------------------~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  228 RILVWRDFGS-----------------------SDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             cEEEEecccc-----------------------ccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCC
Confidence            9999974220                       01122233455689999999999995 59999999999999999999


Q ss_pred             eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-----------EeecCCeeEEEeCCCCCCEE
Q 010748          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-----------WAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------~~~~~~v~~v~~~~~~~~~~  368 (502)
                      + .+-+..-.++|..+.++|++ .+.+....|+.|.+............           ....+-.+.++++|. .+.+
T Consensus       284 ~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~  360 (792)
T KOG1963|consen  284 K-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSL  360 (792)
T ss_pred             C-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCce
Confidence            8 44456678899999999999 77777888999999876433221111           112334567788884 3457


Q ss_pred             EEEeCCCcEEEEECCCCCCCCC------------------------------------------CC------------CC
Q 010748          369 VVSLEDGTIKGFDIRTAKSDPD------------------------------------------ST------------SQ  394 (502)
Q Consensus       369 ~~~~~dg~v~i~d~~~~~~~~~------------------------------------------~~------------~~  394 (502)
                      +..+..|.|.+||+.+......                                          ..            ..
T Consensus       361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~  440 (792)
T KOG1963|consen  361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN  440 (792)
T ss_pred             eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence            7777888888888766532000                                          00            00


Q ss_pred             ccce-----EEeccCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEECCCC--------CeeEEEEecCCCCcEEEEEEcCC
Q 010748          395 QSSF-----TLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNN--------QPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       395 ~~~~-----~~~~h~~~v~~l~~sp-~~~~~l~t~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ..-+     ....|...+...++.+ .....++|++.||.++||-+...        ...|......|..++++++|+.|
T Consensus       441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d  520 (792)
T KOG1963|consen  441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD  520 (792)
T ss_pred             cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence            0000     0122444444444433 33238999999999999988432        12344444458889999999999


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748          461 SPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       461 ~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      |.  +++.+.+++|.+||..+...+....+.+.
T Consensus       521 Gs--lla~s~~~~Itiwd~~~~~~l~~~~~~~~  551 (792)
T KOG1963|consen  521 GS--LLAVSFDDTITIWDYDTKNELLCTEGSRN  551 (792)
T ss_pred             Cc--EEEEecCCEEEEecCCChhhhhccccccc
Confidence            97  44467888999999988544444444433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=1.3e-16  Score=158.91  Aligned_cols=266  Identities=18%  Similarity=0.219  Sum_probs=186.7

Q ss_pred             ccccccccccCCCceEEEEE-ecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          139 SEDLEDMTINPNDAVIVCAR-NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~-~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ...|.++.|+|....+++|+ ..|   .+-+|.........+....-+....+...+.+.|+..     +.+.-+++++.
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~G---qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~-----~~~~~f~s~ss  313 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNG---QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN-----EHNTEFFSLSS  313 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCc---eEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc-----CCCCceEEEec
Confidence            35799999999976655554 444   3455554444331123333334444555678888752     33366888888


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe--
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD--  295 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd--  295 (502)
                      ||.|..|+++..........+..               .........-...+++++|.+...+.++.|+..|.|..=.  
T Consensus       314 DG~i~~W~~~~l~~P~e~~~~~~---------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  314 DGSICSWDTDMLSLPVEGLLLES---------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             CCcEeeeeccccccchhhccccc---------------ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence            99999998764332111111110               0000111123467899999998889999999999988733  


Q ss_pred             -CCCC-----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC-CCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748          296 -VAAG-----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-ISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       296 -~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~~  368 (502)
                       ....     +.+..+..|.++|.++.++|-+..+|++++ |-+++||... ...+..........+++++|+|..+.+|
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF  457 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF  457 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence             2222     123355678999999999999977777776 9999999988 4444444445566699999999988899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      +++..+|.|.+||+.....       .++.+...+....+.+.|++.+ .+|++|...|++.+|++..
T Consensus       458 ~~~d~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  458 ATVDGDGNLDIWDLLQDDE-------EPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEEcCCCceehhhhhcccc-------CCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCc
Confidence            9999999999999987643       6666666667778888999988 9999999999999999964

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=4.4e-17  Score=144.94  Aligned_cols=217  Identities=17%  Similarity=0.307  Sum_probs=169.2

Q ss_pred             CcccceeeEEeccC---CCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          264 SHTDSVLGLAWNKE---FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       264 ~h~~~V~~l~~~~~---~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      .|......++|+-+   +..+||.|+.-|.|+|.|+.++++...+.+|...|..+.++|..+++++++|.|.+|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            46777888888654   345889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceE---eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCC------------------CCCCCCccce-
Q 010748          341 ISTHSGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD------------------PDSTSQQSSF-  398 (502)
Q Consensus       341 ~~~~~~~~~---~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~------------------~~~~~~~~~~-  398 (502)
                      +..++..+.   +|...|.++.|++++. ++++++.|.+|++|++......                  +.....-+.+ 
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            998877544   5788999999999987 8999999999999999843210                  0000011122 


Q ss_pred             EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC------------CeeEEEEecCCCCcEEEEE--EcCCCCcE
Q 010748          399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------------QPSCIASRNPKAGAVFSVA--FSEDSPFV  464 (502)
Q Consensus       399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~------------~~~~~~~~~~~~~~v~~~~--~spd~~~l  464 (502)
                      +-..|...|-|+.|--   .++++-|-++.|..|-....            ....+..+......|+-+.  |.|-+. +
T Consensus       246 t~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~  321 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-M  321 (385)
T ss_pred             ccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-H
Confidence            3345888888888873   78999999999999987211            1112334444455566554  456677 5


Q ss_pred             EEEEeCCCcEEEEECCCCccc
Q 010748          465 LAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       465 l~sg~~dg~i~vwd~~~~~~~  485 (502)
                      ||.|+..|.|.+||+......
T Consensus       322 la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCc
Confidence            999999999999999988874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=2.9e-15  Score=145.28  Aligned_cols=242  Identities=10%  Similarity=0.121  Sum_probs=151.6

Q ss_pred             CCCCCEEEEec-CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REKGNFMAVGS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~-~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|++++|++++ .++.|.+|+++....+...                    .  ..   ........++|+|+++ +|++
T Consensus        43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~--------------------~--~~---~~~~~p~~i~~~~~g~-~l~v   96 (330)
T PRK11028         43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFA--------------------A--ES---PLPGSPTHISTDHQGR-FLFS   96 (330)
T ss_pred             CCCCCEEEEEECCCCcEEEEEECCCCceEEe--------------------e--ee---cCCCCceEEEECCCCC-EEEE
Confidence            89999987764 5789999998621111100                    0  00   1122456899999965 5555


Q ss_pred             E-ecCCcEEEEeCCC-C---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc------ceEeecC
Q 010748          285 A-SADKQVKIWDVAA-G---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------FKWAVAA  353 (502)
Q Consensus       285 g-s~dg~v~vwd~~~-~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~~~~~  353 (502)
                      + ..++.|.+|++.+ +   +.+..+. +.....+++++|++..++++...++.|.+||+.+.....      .......
T Consensus        97 ~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~  175 (330)
T PRK11028         97 ASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA  175 (330)
T ss_pred             EEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC
Confidence            4 4589999999964 2   2233333 234567789999994444566677999999998633221      0112345


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc------CCCeeEEEEcCCCCCEEEEEe-CC
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGS-TD  426 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s-~d  426 (502)
                      ....+.|+|++..++++...++.|.+|++......     ...+..+..+      ......+.++|++ ++|+++. .+
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~  249 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTA  249 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCC
Confidence            57789999988744444445899999999742100     1222222221      1233468899998 6666664 47


Q ss_pred             CcEEEEECCCCC--eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          427 KMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 g~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +.|.+|++....  ...+..... ......+.|+|+|++++++...+++|.+|++..
T Consensus       250 ~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        250 SLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            899999986532  112222221 124557899999998666666689999998853

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=6.6e-17  Score=147.68  Aligned_cols=254  Identities=21%  Similarity=0.261  Sum_probs=174.4

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      .+.||+|+.|..|+||.+.....-..                  ..+-.....+..|..+|+++.|+|+ +.+||||+.+
T Consensus        26 ~~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~   86 (434)
T KOG1009|consen   26 LNKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDG   86 (434)
T ss_pred             ccceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCC
Confidence            44999999999999999876443221                  0123344567789999999999999 5699999999


Q ss_pred             CcEEEEeCC--------C--------CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748          289 KQVKIWDVA--------A--------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       289 g~v~vwd~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      |.|.+|-..        +        ......+.+|...|..++|+|++ .++++++.|..+++||++.+........|.
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~  165 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHE  165 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccccc
Confidence            999999765        2        23455678899999999999999 999999999999999999999988888999


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCC-----------CCccceEEeccC----CCeeEEEEcCCCC
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST-----------SQQSSFTLHAHD----KAVCTISYNPLVP  417 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~-----------~~~~~~~~~~h~----~~v~~l~~sp~~~  417 (502)
                      .-+.-++|.|.+. ++++-+.|...+.+.+..........           ......++ -|.    .-...++|+|+| 
T Consensus       166 ~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL-fhDeTlksFFrRlsfTPdG-  242 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL-FHDETLKSFFRRLSFTPDG-  242 (434)
T ss_pred             cccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee-eecCchhhhhhhcccCCCC-
Confidence            9999999999765 67777777766666655432110000           00011111 121    234567899998 


Q ss_pred             CEEEEEeC----CCc-----EEEEECCCCCeeEEEEecCCCCcEEEEEEcCC-----------------CCcEEEEEeCC
Q 010748          418 NLLATGST----DKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----------------SPFVLAIGGSK  471 (502)
Q Consensus       418 ~~l~t~s~----dg~-----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd-----------------~~~ll~sg~~d  471 (502)
                      .+|++.+.    .+.     .++|+-...+ .+...++....+...+.|+|-                 .+.++|.++.+
T Consensus       243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~-rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~  321 (434)
T KOG1009|consen  243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLK-RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN  321 (434)
T ss_pred             cEEEcccceeeeCCceeeceeEeecccccc-CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc
Confidence            78877542    222     3455443322 133344444444555555441                 12256666554


Q ss_pred             CcEEEEECCCCccccc
Q 010748          472 GKLEIWDTLSDAGISN  487 (502)
Q Consensus       472 g~i~vwd~~~~~~~~~  487 (502)
                       .|+|||..+-..+..
T Consensus       322 -svyvydtq~~~P~~~  336 (434)
T KOG1009|consen  322 -SVYVYDTQTLEPLAV  336 (434)
T ss_pred             -eEEEeccccccceEE
Confidence             799999988665543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=1.1e-15  Score=138.31  Aligned_cols=230  Identities=17%  Similarity=0.223  Sum_probs=169.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ..+...|.+|+.+|. ++|+.+......                           ........|.-+-|+..   ++|..
T Consensus        14 Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~---------------------------~~~~~~~~IvEmLFSSS---LvaiV   62 (391)
T KOG2110|consen   14 NQDSTLLSVGSKDGY-KIFSCSPFEKCF---------------------------SKDTEGVSIVEMLFSSS---LVAIV   62 (391)
T ss_pred             ccceeEEEccCCCce-eEEecCchHHhh---------------------------cccCCCeEEEEeecccc---eeEEE
Confidence            678889999999885 477775422100                           11112234555667654   67766


Q ss_pred             ecCCc--EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---ecCCeeEEEe
Q 010748          286 SADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLAW  360 (502)
Q Consensus       286 s~dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~v~~  360 (502)
                      +.+..  +++.+++.+..+..+. ....|.++.++.+   .|+++-.+. |+|||++..+.......   +...+.+++.
T Consensus        63 ~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~  137 (391)
T KOG2110|consen   63 SIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP  137 (391)
T ss_pred             ecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc
Confidence            66544  9999999888887776 5678999999875   355555444 99999998876654332   3344555555


Q ss_pred             CCCCCCEEEE--EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc-EEEEECCCC
Q 010748          361 DPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSNN  437 (502)
Q Consensus       361 ~~~~~~~~~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~-i~vwd~~~~  437 (502)
                      ++.+. +++.  +...|.|.+||+.+.         +++..+.+|.+++.+++|+++| .+|||+|..|+ ||||.+.++
T Consensus       138 n~~n~-ylAyp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  138 NNANC-YLAYPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCCCc-eEEecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCc
Confidence            55443 3433  345789999999987         8899999999999999999998 99999999998 799999999


Q ss_pred             CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +....+.+......|.+++|+|+++| |++.|+.++|+||.+....
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence            85444444444556899999999995 8888899999999997654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=3.2e-16  Score=139.07  Aligned_cols=251  Identities=18%  Similarity=0.233  Sum_probs=185.4

Q ss_pred             cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748          189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      +....+|.+|       ++++..+|++.....|.||.....+.                        ....+.+..|...
T Consensus         9 ~~~pitchAw-------n~drt~iAv~~~~~evhiy~~~~~~~------------------------w~~~htls~Hd~~   57 (361)
T KOG1523|consen    9 LLEPITCHAW-------NSDRTQIAVSPNNHEVHIYSMLGADL------------------------WEPAHTLSEHDKI   57 (361)
T ss_pred             ccCceeeeee-------cCCCceEEeccCCceEEEEEecCCCC------------------------ceeceehhhhCcc
Confidence            3445578888       78999999999999999999865433                        3344556689999


Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCC-C--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAA-G--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-  344 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-  344 (502)
                      |+++.|+|. .+.|++|+.|..-+||.... +  ++...+..++..++++.|+|.+ +.|++|+.-+.|.||-+....- 
T Consensus        58 vtgvdWap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdW  135 (361)
T KOG1523|consen   58 VTGVDWAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDW  135 (361)
T ss_pred             eeEEeecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccce
Confidence            999999999 67999999999999999833 3  4555666789999999999999 8999999999999998876542 


Q ss_pred             ---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCC-------CCC--CCCCccceEEeccCCCeeEEEE
Q 010748          345 ---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS-------DPD--STSQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       345 ---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~-------~~~--~~~~~~~~~~~~h~~~v~~l~~  412 (502)
                         ......+.+.|+++.|+|++ -++++|+.|+.+++|..--...       ...  .+.......+....+.+..+.|
T Consensus       136 WVsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f  214 (361)
T KOG1523|consen  136 WVSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF  214 (361)
T ss_pred             ehhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence               22344567889999999975 4889999999999987532211       000  0111222333355688999999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          413 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       413 sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vw  477 (502)
                      +|.| ..|+-.+.|+++.+-|.....+... ......-+..++.|-.+..  +++++.+..-.++
T Consensus       215 s~sG-~~lawv~Hds~v~~~da~~p~~~v~-~~~~~~lP~ls~~~ise~~--vv~ag~~c~P~lf  275 (361)
T KOG1523|consen  215 SPSG-NRLAWVGHDSTVSFVDAAGPSERVQ-SVATAQLPLLSVSWISENS--VVAAGYDCGPVLF  275 (361)
T ss_pred             CCCC-CEeeEecCCCceEEeecCCCchhcc-chhhccCCceeeEeecCCc--eeecCCCCCceEE
Confidence            9998 8999999999999999877653222 2222236788888877664  5556666433333

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5.1e-16  Score=142.90  Aligned_cols=204  Identities=18%  Similarity=0.181  Sum_probs=156.3

Q ss_pred             eeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (502)
                      .+++|+.+ +..|++|+.||++|||+..+...+.....|...|.+|.|+|++ .+|++.+.| ..+||+.+++.......
T Consensus       148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC
Confidence            78899999 4599999999999999988888888888899999999999999 999999999 99999999985554333


Q ss_pred             e--ecCCeeEEEeCCCC---CCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE
Q 010748          350 A--VAADVESLAWDPHA---EHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       350 ~--~~~~v~~v~~~~~~---~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .  .......+.|..++   ..++++. ..-+.|+.|++...... .   ..+..+.......|++++.+++| ++++.|
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~---~l~~~~~~~~~~siSsl~VS~dG-kf~AlG  299 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-N---FLRLRKKIKRFKSISSLAVSDDG-KFLALG  299 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-c---ccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence            1  22335666776654   2123322 34456777777654221 0   11233333344579999999998 999999


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +.||.|-|++..+.+. ..+....|.+.|+.+.|+|+.++ +++-+.+..+.|..+.-..
T Consensus       300 T~dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             ccCCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEeecc
Confidence            9999999999988874 44556789999999999999997 7778888888888876543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=7.7e-18  Score=166.05  Aligned_cols=236  Identities=23%  Similarity=0.372  Sum_probs=180.5

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |...|.++++|+.|..++||..++..++.                           ...||.+.|+.++.+.. ..++|+
T Consensus       198 fDrtg~~Iitgsdd~lvKiwS~et~~~lA---------------------------s~rGhs~ditdlavs~~-n~~iaa  249 (1113)
T KOG0644|consen  198 FDRTGRYIITGSDDRLVKIWSMETARCLA---------------------------SCRGHSGDITDLAVSSN-NTMIAA  249 (1113)
T ss_pred             eccccceEeecCccceeeeeeccchhhhc---------------------------cCCCCccccchhccchh-hhhhhh
Confidence            36789999999999999999988755443                           34589999999999988 669999


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCcc---ceEeec--------
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSG---FKWAVA--------  352 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~---~~~~~~--------  352 (502)
                      +|.|..|++|-+..+.++..+.+|++.|++++|+|-.     +.+.||++++||.+- .....   ..+...        
T Consensus       250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~  324 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF  324 (1113)
T ss_pred             cccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence            9999999999999999999999999999999999954     778999999999881 11000   000000        


Q ss_pred             ------------------CCeeEEEeCCC----------CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC
Q 010748          353 ------------------ADVESLAWDPH----------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  404 (502)
Q Consensus       353 ------------------~~v~~v~~~~~----------~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~  404 (502)
                                        ..+.+++|...          ...+.+++-.+-.+++|++.++         .....+.+|.
T Consensus       325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghs  395 (1113)
T KOG0644|consen  325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHS  395 (1113)
T ss_pred             cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhcccc
Confidence                              11222233221          1122333334455677777776         6677788899


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      ..+..+.++|.++....+++.||...|||+..+.+...+. .+| +.+...+|+++|.. ++....-|.++|.....++.
T Consensus       396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~kl~d~kFSqdgts-~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-GKLVDGKFSQDGTS-IALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-ceeeccccCCCCce-EecCCCCCceEEeccCCCcc
Confidence            9999999999988899999999999999999988765555 444 66788899999985 77667778999988766654


Q ss_pred             c
Q 010748          485 I  485 (502)
Q Consensus       485 ~  485 (502)
                      .
T Consensus       473 ~  473 (1113)
T KOG0644|consen  473 Q  473 (1113)
T ss_pred             c
Confidence            4

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=2.2e-15  Score=150.39  Aligned_cols=244  Identities=32%  Similarity=0.482  Sum_probs=188.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc-cceeeEEe-ccCCCcEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAW-NKEFRNILA  283 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-~~~~~~~l~  283 (502)
                      .+.+..++.++.++.+.+|+......                          ....+.++. ..+..+.+ ++++..+++
T Consensus        74 ~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (466)
T COG2319          74 SPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHDSSVSKLALSSPDGNSILL  127 (466)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCCCceeeEEEECCCcceEEe
Confidence            57799999999999999999875320                          111112222 36777777 777443555


Q ss_pred             EEec-CCcEEEEeCCC-CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCccceEeecCCeeEEEe
Q 010748          284 SASA-DKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWAVAADVESLAW  360 (502)
Q Consensus       284 sgs~-dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~  360 (502)
                      ..+. |+.+.+|++.. ......+..|...|.++.|+|.+ ..+++++. ++.+++|++...........+...+.+++|
T Consensus       128 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  206 (466)
T COG2319         128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF  206 (466)
T ss_pred             ccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence            5444 99999999998 78888889999999999999999 67888875 999999999986666555568889999999


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce-EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      +|.+..++++++.++.|++||.+..         .... .+..|...+ ...|+|++ .++++++.|+.+++|++.....
T Consensus       207 ~~~~~~~~~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         207 SPDGGLLIASGSSDGTIRLWDLSTG---------KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             cCCcceEEEEecCCCcEEEEECCCC---------cEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc
Confidence            9877634555589999999988844         4444 577787775 44899987 8888999999999999987764


Q ss_pred             eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                       .+.....|...|.++.|.|++.. +++++.++.+++|++.+........
T Consensus       276 -~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         276 -LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             -EEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee
Confidence             23333677889999999998875 5558888999999988877655443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.2e-15  Score=127.83  Aligned_cols=289  Identities=17%  Similarity=0.223  Sum_probs=181.8

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCCee--eeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPNLY--VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~l~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      ..|.+-+++|.+++|++|...+++..+.+-........   ...+.  .-|+.++    ..+.+         ...+|++
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpi----y~~~f---------~d~~Lls   77 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPI----YYLAF---------HDDFLLS   77 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCe----eeeee---------ehhheee
Confidence            35778899999999999999996555555444332221   11111  2233332    33333         2556777


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      |+ ||.|+=|..+........         +..   ...  +.+...-...--.|+++...|. .+-++.++.|+.++-|
T Consensus        78 ~g-dG~V~gw~W~E~~es~~~---------K~l---we~--~~P~~~~~~evPeINam~ldP~-enSi~~AgGD~~~y~~  141 (325)
T KOG0649|consen   78 GG-DGLVYGWEWNEEEESLAT---------KRL---WEV--KIPMQVDAVEVPEINAMWLDPS-ENSILFAGGDGVIYQV  141 (325)
T ss_pred             cc-CceEEEeeehhhhhhccc---------hhh---hhh--cCccccCcccCCccceeEeccC-CCcEEEecCCeEEEEE
Confidence            76 499999987643221000         000   000  0011110122356899999998 4456666689999999


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe----------ecCCeeEEEeCCCC
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----------VAADVESLAWDPHA  364 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~v~~~~~~  364 (502)
                      |+++|+..+++++|++.|.++.-.... ..+++|+.||++++||+++.+.......          ....|-+++-+.  
T Consensus       142 dlE~G~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--  218 (325)
T KOG0649|consen  142 DLEDGRIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--  218 (325)
T ss_pred             EecCCEEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--
Confidence            999999999999999999999885555 5789999999999999999887653321          123466666554  


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . .+++| ....+.+|.++....       .+++.+.   .++..+.|..   .++++++..+.|.-|.+..-   ....
T Consensus       219 d-WlvCG-gGp~lslwhLrsse~-------t~vfpip---a~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gv---l~a~  280 (325)
T KOG0649|consen  219 D-WLVCG-GGPKLSLWHLRSSES-------TCVFPIP---ARVHLVDFVD---DCVLIGGEGNHVQSYTLNGV---LQAN  280 (325)
T ss_pred             c-eEEec-CCCceeEEeccCCCc-------eEEEecc---cceeEeeeec---ceEEEeccccceeeeeeccE---EEEe
Confidence            2 44444 466799999998632       3344444   4466677774   67888888888999987542   1222


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .+......++..|+..--.+|..+|..+.+.|+.
T Consensus       281 ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  281 IPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             ccCCccceeeecccCCceEEEEecccceeeeeee
Confidence            2222234555555433322466677777777763

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=7.6e-16  Score=155.80  Aligned_cols=247  Identities=18%  Similarity=0.215  Sum_probs=176.5

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec-cCCCcEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILA  283 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~  283 (502)
                      |+|=...++++...-.|+|||...+..+..+-                        .-..-...|+.|.+- .+...+|+
T Consensus      1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~------------------------n~~~~~t~Vs~l~liNe~D~aLlL 1127 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFD------------------------NGAFPDTRVSDLELINEQDDALLL 1127 (1387)
T ss_pred             ecCCCceeEEcCCcceEEEEecccCceecccc------------------------CCCCCCCccceeeeecccchhhee
Confidence            45667788888877899999997654432211                        001233568888874 34466899


Q ss_pred             EEecCCcEEEEeCC-----CCeeeEeeccC-------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc-eEe
Q 010748          284 SASADKQVKIWDVA-----AGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWA  350 (502)
Q Consensus       284 sgs~dg~v~vwd~~-----~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~  350 (502)
                      +|+.||.|+||+--     ..+.+..+.+-       .+.-.-+.|.... .+|++++.-..|+|||........- ...
T Consensus      1128 tas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1128 TASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred             eeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccC
Confidence            99999999999742     22344333221       1222446788777 4566666689999999987665432 223


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC--eeEEEEcCCCCCEEEEEeCCCc
Q 010748          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ....++++.-+...++++++|..||.|++||.|....      ...+.....|+..  |..+.+.+.|-..|++|+.+|.
T Consensus      1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred             CCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence            4556888877666677999999999999999998732      2456777788877  9999999988667999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCC--C-cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          429 VKLWDLSNNQPSCIASRNPKA--G-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~--~-~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      |++||++........+...|.  | .++++..++..+ ++|+|+. +.|+||++.....
T Consensus      1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred             EEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhh
Confidence            999999985322333333332  4 599999999999 7998888 8999999976554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=9.9e-18  Score=165.31  Aligned_cols=226  Identities=16%  Similarity=0.275  Sum_probs=173.5

Q ss_pred             cccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          257 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       257 ~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~i  336 (502)
                      +....+.+|..+|+|+.|... +.++++|+.|..|+||.+.++.++.+..+|.+.|+.++.+..+ .++++++.|..|++
T Consensus       181 k~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEE
Confidence            334456799999999999999 5699999999999999999999999999999999999999888 88999999999999


Q ss_pred             EecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC-----CCCccceEEec---------
Q 010748          337 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-----TSQQSSFTLHA---------  402 (502)
Q Consensus       337 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~-----~~~~~~~~~~~---------  402 (502)
                      |.++.+..+..+.+|.+.|++++|+|.     .+++.||++++||.+-......+     .....+..+..         
T Consensus       259 Wrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             EecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            999999999999999999999999994     37788999999999821110000     00000000000         


Q ss_pred             -------cCCCeeEEEEcC----------CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEE
Q 010748          403 -------HDKAVCTISYNP----------LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL  465 (502)
Q Consensus       403 -------h~~~v~~l~~sp----------~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll  465 (502)
                             .....-+++|..          +...+.+++-.+..+++|++.++.  ......+|...+..+.++|-.+.+.
T Consensus       334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPRIA  411 (1113)
T ss_pred             ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCcHhh
Confidence                   000111122222          111344445556678889998887  5667778899999999999988778


Q ss_pred             EEEeCCCcEEEEECCCCccccccccC
Q 010748          466 AIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       466 ~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      .+++.||...|||+-.+..++..+..
T Consensus       412 msag~dgst~iwdi~eg~pik~y~~g  437 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDIWEGIPIKHYFIG  437 (1113)
T ss_pred             hhccCCCceEeeecccCCcceeeecc
Confidence            89999999999999999988777643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.8e-16  Score=147.91  Aligned_cols=306  Identities=14%  Similarity=0.180  Sum_probs=215.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCee-eeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY-VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      ..|.+-|+.+.|...|..|++|+.+.   .+-+|.|...... ..+. .|...+     +...|+++     .+..-+++
T Consensus       139 ~~H~GcVntV~FN~~Gd~l~SgSDD~---~vv~WdW~~~~~~-l~f~SGH~~Nv-----fQaKFiP~-----s~d~ti~~  204 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRGDVLASGSDDL---QVVVWDWVSGSPK-LSFESGHCNNV-----FQAKFIPF-----SGDRTIVT  204 (559)
T ss_pred             cCCCCccceeeecccCceeeccCccc---eEEeehhhccCcc-cccccccccch-----hhhhccCC-----CCCcCcee
Confidence            56899999999999999999999775   5566776655431 1112 233222     33344433     34667899


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      ++.||.+++=.+.......                        ....+..|.++|.-++.-|...+.|.|++.|+.|.-.
T Consensus       205 ~s~dgqvr~s~i~~t~~~e------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~  260 (559)
T KOG1334|consen  205 SSRDGQVRVSEILETGYVE------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI  260 (559)
T ss_pred             ccccCceeeeeecccccee------------------------cceecccccCccceeeecCCCCCcccccccccceeee
Confidence            9999999997765322222                        1223457999999999999989999999999999999


Q ss_pred             eCCCCeeeEee---ccCCC---CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc------cceE------eecCCee
Q 010748          295 DVAAGKCNLTL---EHHTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS------GFKW------AVAADVE  356 (502)
Q Consensus       295 d~~~~~~~~~~---~~h~~---~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~------~~~~~v~  356 (502)
                      |++++.+...+   ..+..   ...+++.+|...+.+++|+.|..+++||.|.-...      ....      ...-.|+
T Consensus       261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT  340 (559)
T KOG1334|consen  261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT  340 (559)
T ss_pred             eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence            99887654443   23333   56789999999889999999999999998853322      1010      2244699


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC-CCCC--CccceE-EeccCC--CeeEEEE-cCCCCCEEEEEeCCCcE
Q 010748          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-DSTS--QQSSFT-LHAHDK--AVCTISY-NPLVPNLLATGSTDKMV  429 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~-~~~~--~~~~~~-~~~h~~--~v~~l~~-sp~~~~~l~t~s~dg~i  429 (502)
                      +++|+.++. -++++..|-.|++|.-..+.... .+..  ...+.. +++|..  .|-++-| -|.. .++++|+.-|.|
T Consensus       341 gl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhI  418 (559)
T KOG1334|consen  341 GLVYSHDGS-ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHI  418 (559)
T ss_pred             eEEecCCcc-ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceE
Confidence            999997665 57777788889999544332210 0000  012222 567753  4666655 4554 899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      .||+-.+++.+..  +.+...-|+|+.-+|--+ +||++|-|..|+||-..+.+.
T Consensus       419 FiW~K~t~eii~~--MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  419 FIWDKKTGEIIRF--MEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             EEEecchhHHHHH--hhcccceEeccCCCCCCc-hhhccCCccceeeecCCcccc
Confidence            9999999884333  344444899999999999 799999999999998855443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.71  E-value=3.5e-16  Score=150.94  Aligned_cols=230  Identities=19%  Similarity=0.302  Sum_probs=166.9

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      ++|-|||..|+.+.. ..+.|||.+.+..++                           .+++|.+.|+|++|+.+ +..+
T Consensus        18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llq---------------------------tLKgHKDtVycVAys~d-GkrF   68 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---------------------------PLKGHKDTVYCVAYAKD-GKRF   68 (1081)
T ss_pred             eEECCCCceEEEecC-CEEEEEeCCCccccc---------------------------ccccccceEEEEEEccC-Ccee
Confidence            344799988877754 578899998765555                           35689999999999999 5699


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      |||+.|..|.+|.-.-. -+..+ .|++.|+||.|+|-. +.|++++.+ ..-+|........  .......+.+++|..
T Consensus        69 ASG~aDK~VI~W~~klE-G~LkY-SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWtn  142 (1081)
T KOG1538|consen   69 ASGSADKSVIIWTSKLE-GILKY-SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWTN  142 (1081)
T ss_pred             ccCCCceeEEEeccccc-ceeee-ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeecC
Confidence            99999999999985422 22233 499999999999998 788888754 3567766543322  344556789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC----CEEEEEeCCCcEEEEECCCCC
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP----NLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~----~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +|. +++.|..+|+|.+-+.....       ...+..-.+...+|.+++|+|..+    ..++......++.+|.+....
T Consensus       143 DGq-ylalG~~nGTIsiRNk~gEe-------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~  214 (1081)
T KOG1538|consen  143 DGQ-YLALGMFNGTISIRNKNGEE-------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ  214 (1081)
T ss_pred             CCc-EEEEeccCceEEeecCCCCc-------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence            876 89999999999987544321       122233345678999999999642    467777778888888776432


Q ss_pred             eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                         +-.-..-.-...|+.+.|+|.| +..||.++.+++|--
T Consensus       215 ---Igk~r~L~FdP~CisYf~NGEy-~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  215 ---IGKDRALNFDPCCISYFTNGEY-ILLGGSDKQLSLFTR  251 (1081)
T ss_pred             ---ecccccCCCCchhheeccCCcE-EEEccCCCceEEEee
Confidence               2211222233568999999998 556889999998853

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=3.2e-17  Score=152.01  Aligned_cols=224  Identities=17%  Similarity=0.240  Sum_probs=182.0

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      ++.+|.+|+.|+..|.|-.+|..++.....+                            .-...|.++.|..+ .+++|+
T Consensus       137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----------------------------~v~Etv~Dv~~LHn-eq~~AV  187 (545)
T KOG1272|consen  137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI----------------------------NVMETVRDVTFLHN-EQFFAV  187 (545)
T ss_pred             ecCCccEEEecCCccceeeeecccceeeeee----------------------------ehhhhhhhhhhhcc-hHHHHh
Confidence            3789999999999999999998764433221                            23467889999877 556666


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  364 (502)
                      +- ...+.||| ..|..++.++.| ..|..|.|-|.. .+|++++..|.++--|+.+++.+.......+.+..++-+|.+
T Consensus       188 AQ-K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N  263 (545)
T KOG1272|consen  188 AQ-KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN  263 (545)
T ss_pred             hh-hceEEEec-CCCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence            54 47899999 668888888755 468899999998 889999999999999999999888777777888899999976


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . ++-+|..+|+|.+|...+.         .++..+..|.++|++|++.+.| ++++|.+.|..++|||+++...  +.+
T Consensus       264 a-Vih~GhsnGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~q--l~t  330 (545)
T KOG1272|consen  264 A-VIHLGHSNGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQ--LHT  330 (545)
T ss_pred             c-eEEEcCCCceEEecCCCCc---------chHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccc--cce
Confidence            5 7889999999999998876         7888899999999999999998 9999999999999999998762  333


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      ... ..+...++||..|  +||. |....|.||.
T Consensus       331 ~~t-p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~  360 (545)
T KOG1272|consen  331 YRT-PHPASNLSLSQKG--LLAL-SYGDHVQIWK  360 (545)
T ss_pred             eec-CCCcccccccccc--ceee-ecCCeeeeeh
Confidence            222 3456778898887  4664 4455799994

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.7e-14  Score=128.86  Aligned_cols=306  Identities=16%  Similarity=0.214  Sum_probs=188.2

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      -.+.-++|+|.-.-++++..++     .|.+|+.... .+....+.   ...-..|++|-+.      .++-|++|+. +
T Consensus        99 ~dlr~~aWhqH~~~fava~ndd-----vVriy~ksst-~pt~Lks~---sQrnvtclawRPl------saselavgCr-~  162 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDD-----VVRIYDKSST-CPTKLKSV---SQRNVTCLAWRPL------SASELAVGCR-A  162 (445)
T ss_pred             cceeeEeechhhhhhhhhccCc-----EEEEeccCCC-CCceecch---hhcceeEEEeccC------Ccceeeeeec-c
Confidence            4567889999888888888887     6666665553 22222221   2233479999633      4668888887 5


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec-CCcEEEEeCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVAA  298 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-dg~v~vwd~~~  298 (502)
                      -|.||..+..-........+             ...........+| ..|++|+|+++|. .|++++. |..|.|||..+
T Consensus       163 gIciW~~s~tln~~r~~~~~-------------s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdt  227 (445)
T KOG2139|consen  163 GICIWSDSRTLNANRNIRMM-------------STHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDT  227 (445)
T ss_pred             eeEEEEcCcccccccccccc-------------cccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCC
Confidence            58899886422211100000             0001112233356 7999999999954 7777665 67899999999


Q ss_pred             CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~  378 (502)
                      +.++......-+.++-+.|+|++ .+|++++.|+..++|..........-....+.|...+|+|.|..++++.+..-.|+
T Consensus       228 g~~~pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  228 GQKIPLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY  306 (445)
T ss_pred             CCcccccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence            98776654456789999999999 89999999999999966543322212233558999999999997777776555444


Q ss_pred             EEECCCCCCCCC-CC---CCccceEE-----ec----cCCCeeEEEEcCCCCCEEEEEeCCC--------cEEEEECCCC
Q 010748          379 GFDIRTAKSDPD-ST---SQQSSFTL-----HA----HDKAVCTISYNPLVPNLLATGSTDK--------MVKLWDLSNN  437 (502)
Q Consensus       379 i~d~~~~~~~~~-~~---~~~~~~~~-----~~----h~~~v~~l~~sp~~~~~l~t~s~dg--------~i~vwd~~~~  437 (502)
                      -........... ..   ...++..+     .+    ..+++.+++|.|.| .+||+.-..+        .|.+||.+..
T Consensus       307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence            333222211000 00   00001111     11    14678999999998 7777765433        3667887765


Q ss_pred             CeeEEEE--ecCCCCcEEEEEEcC---CCCcEEEEEeCCCcEEEEECC
Q 010748          438 QPSCIAS--RNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       438 ~~~~~~~--~~~~~~~v~~~~~sp---d~~~ll~sg~~dg~i~vwd~~  480 (502)
                      -+.....  ..+. ....-++|+|   +++ +|..+=+.|.+.-|.+.
T Consensus       386 p~vels~cg~i~g-e~P~~IsF~pl~n~g~-lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  386 PPVELSYCGMIGG-EYPAYISFGPLKNEGR-LLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             CceEEEecccccC-CCCceEEeeecccCCc-EEEEEeccCceEeeeeE
Confidence            4322221  1111 1133455554   456 67778888888888764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.70  E-value=5.6e-15  Score=131.61  Aligned_cols=290  Identities=16%  Similarity=0.259  Sum_probs=182.3

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE-EEEecCCCcEEE
Q 010748          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF-MAVGSMEPAIEI  223 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-la~g~~dg~I~i  223 (502)
                      ..|+|+|++||+++..    ++-|...  .     .+..||-...-.....++|       ..+.-+ |.+...++.|.+
T Consensus        14 c~fSp~g~yiAs~~~y----rlviRd~--~-----tlq~~qlf~cldki~yieW-------~ads~~ilC~~yk~~~vqv   75 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY----RLVIRDS--E-----TLQLHQLFLCLDKIVYIEW-------KADSCHILCVAYKDPKVQV   75 (447)
T ss_pred             eeECCCCCeeeeeeee----EEEEecc--c-----hhhHHHHHHHHHHhhheee-------eccceeeeeeeeccceEEE
Confidence            5799999999999744    2333322  2     4444543222112235667       455554 455677889999


Q ss_pred             eeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeE
Q 010748          224 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  303 (502)
Q Consensus       224 wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~  303 (502)
                      |++...+                           -.........++.+++|+|+|+++|.+...+-.|.||.+.+.+...
T Consensus        76 wsl~Qpe---------------------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   76 WSLVQPE---------------------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             EEeecce---------------------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            9996321                           1112234567899999999999999999999999999999877643


Q ss_pred             eeccCCCCeEEEEEcCCCCcEEEEEeCC------------------------------------CcEEEEecCCCCCccc
Q 010748          304 TLEHHTDKVQAVAWNHHSPQILLSGSFD------------------------------------RSVVMKDARISTHSGF  347 (502)
Q Consensus       304 ~~~~h~~~v~~l~~~~~~~~~l~s~s~d------------------------------------g~i~iwd~~~~~~~~~  347 (502)
                       ++.-...+..++|+|+| ++.+..+.-                                    ..+.+||.--.-.+ .
T Consensus       129 -~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv-~  205 (447)
T KOG4497|consen  129 -LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV-Y  205 (447)
T ss_pred             -ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee-e
Confidence             33344566888999998 666655432                                    12333332111110 0


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCC------------------------------------CCC-
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS------------------------------------DPD-  390 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~------------------------------------~~~-  390 (502)
                      .....-.+..++|+|.+. ++++|+.|+.+++.+--+-+.                                    ... 
T Consensus       206 aYe~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~  284 (447)
T KOG4497|consen  206 AYERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL  284 (447)
T ss_pred             eeeeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence            122345688899999654 899999999988765322211                                    000 


Q ss_pred             -------C-------------CCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCC
Q 010748          391 -------S-------------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPK  448 (502)
Q Consensus       391 -------~-------------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~  448 (502)
                             .             ...++..-+......+.-++|+++. .+++|-..  -+.+-+||++..+.   ...--.
T Consensus       285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l---~avLiQ  360 (447)
T KOG4497|consen  285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL---HAVLIQ  360 (447)
T ss_pred             ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh---hhhhhh
Confidence                   0             0000111111223457788999986 77777543  35699999998773   233334


Q ss_pred             CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       449 ~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..+|....|+|..+. |+.+.....+++|-......+...
T Consensus       361 k~piraf~WdP~~pr-L~vctg~srLY~W~psg~~~V~vP  399 (447)
T KOG4497|consen  361 KHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPRVVGVP  399 (447)
T ss_pred             ccceeEEEeCCCCce-EEEEcCCceEEEEcCCCceEEecC
Confidence            567999999999985 555666668999998775555443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.68  E-value=3.8e-15  Score=140.79  Aligned_cols=231  Identities=13%  Similarity=0.166  Sum_probs=160.1

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      +....++-.|..|+..-.+    -|-||.|.........  .....-...-|.|-.+....  -.+.+--|++|-..|.|
T Consensus       126 ~~~~~~~~~gd~lcFnvg~----~lyv~~~~g~~~~~~p--i~k~~y~gt~P~cHdfn~~~--a~~~g~dllIGf~tGqv  197 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVGR----ELYVYSYRGAADLSKP--IDKREYKGTSPTCHDFNSFT--ATPKGLDLLIGFTTGQV  197 (636)
T ss_pred             eeeccccCCCCEEEEecCC----eEEEEEccCcchhccc--hhhhcccCCCCceecccccc--cCCCCcceEEeeccCce
Confidence            4455556667777666544    2455555532221111  11111122335565553221  14677788899888999


Q ss_pred             EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC---
Q 010748          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA---  298 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~---  298 (502)
                      .+.+...    .+...|                   ......-.+..|+|+.|-|.+..+++.+-.+|.+.+||...   
T Consensus       198 q~idp~~----~~~skl-------------------fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~  254 (636)
T KOG2394|consen  198 QLIDPIN----FEVSKL-------------------FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG  254 (636)
T ss_pred             EEecchh----hHHHHh-------------------hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence            9887643    110000                   00001123478999999998888999999999999997531   


Q ss_pred             -----------C--------------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          299 -----------G--------------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       299 -----------~--------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                                 +              .++..+.--.+.|...+|+|+| .+|++.+.||.++|||..+..........-+
T Consensus       255 ~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG  333 (636)
T KOG2394|consen  255 ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFG  333 (636)
T ss_pred             CCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhcc
Confidence                       1              1111222234578899999988 9999999999999999998887776667778


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      ...|++|+|+++ ++++|++|-.|.+|.+...         +.+..-++|..+|+.++|.|
T Consensus       334 GLLCvcWSPDGK-yIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  334 GLLCVCWSPDGK-YIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ceEEEEEcCCcc-EEEecCCcceEEEEEeccc---------eEEEeccccccceeeEeecc
Confidence            899999999986 8999999999999999876         77888899999999999997

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=3.6e-14  Score=126.16  Aligned_cols=180  Identities=19%  Similarity=0.338  Sum_probs=136.9

Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCccceEee--cCCeeEEEeCCCCC
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAV--AADVESLAWDPHAE  365 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~--~~~v~~v~~~~~~~  365 (502)
                      +.|.|||=...+++.++. ...+|.++.+.++.   +++. ..+.|.+|.... .+........  +..+.  +..|...
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC--~~~~~~~  147 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLC--SLCPTSN  147 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccCCCceE--eecCCCC
Confidence            479999977778888886 57899999999854   4443 467899999873 3333222221  22333  3344333


Q ss_pred             CEEEE--EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc-EEEEECCCCCeeEE
Q 010748          366 HSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSNNQPSCI  442 (502)
Q Consensus       366 ~~~~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~-i~vwd~~~~~~~~~  442 (502)
                      ..+++  |..-|.|++-|+.....       .+...+.+|.+.|.|++.+.+| .++||+|..|+ |||||..++.+..-
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E  219 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQE  219 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeee
Confidence            33333  56779999999987631       2467889999999999999998 99999999998 89999999997666


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      .........|.+++|||+..+ ||+++..|+|+|+.++....
T Consensus       220 ~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  220 LRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             eecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCCC
Confidence            666666788999999999995 99999999999999977553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.68  E-value=5.7e-14  Score=136.24  Aligned_cols=249  Identities=10%  Similarity=0.105  Sum_probs=151.2

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-C
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-E  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~-d  218 (502)
                      .....+.++|++++|+++....  ..+.+|.++. .+   .+........+..|..+.+       +|++++|++++. +
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~-~g---~l~~~~~~~~~~~p~~i~~-------~~~g~~l~v~~~~~  101 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPE--FRVLSYRIAD-DG---ALTFAAESPLPGSPTHIST-------DHQGRFLFSASYNA  101 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCC--CcEEEEEECC-CC---ceEEeeeecCCCCceEEEE-------CCCCCEEEEEEcCC
Confidence            4567789999999998876533  3455566552 22   2322222223333444433       899998888764 7


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~  298 (502)
                      +.|.+|+++.......                       ..... .+.....+++++|+++.++++...++.|.+||+.+
T Consensus       102 ~~v~v~~~~~~g~~~~-----------------------~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028        102 NCVSVSPLDKDGIPVA-----------------------PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CeEEEEEECCCCCCCC-----------------------ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            8999999963211110                       00001 12234677889999765556777789999999976


Q ss_pred             CeeeE-------eeccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEecCCC--CCc--cceEee------cCCeeEEEe
Q 010748          299 GKCNL-------TLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARIS--THS--GFKWAV------AADVESLAW  360 (502)
Q Consensus       299 ~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~--~~~--~~~~~~------~~~v~~v~~  360 (502)
                      ...+.       .+. .......+.|+|++ ++++++.. +++|.+|++...  ...  ......      ......+.+
T Consensus       158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             CCcccccCCCceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence            43221       111 13446789999999 66666655 999999999742  211  101111      112335889


Q ss_pred             CCCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECC
Q 010748          361 DPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS  435 (502)
Q Consensus       361 ~~~~~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~  435 (502)
                      +|++. +++++ ..++.|.+|++......     ...+..... ......+.++|++ ++|+++. .+++|.+|++.
T Consensus       236 ~pdg~-~lyv~~~~~~~I~v~~i~~~~~~-----~~~~~~~~~-~~~p~~~~~~~dg-~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        236 TPDGR-HLYACDRTASLISVFSVSEDGSV-----LSFEGHQPT-ETQPRGFNIDHSG-KYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCCC-EEEEecCCCCeEEEEEEeCCCCe-----EEEeEEEec-cccCCceEECCCC-CEEEEEEccCCcEEEEEEc
Confidence            99876 55555 45789999999654100     011222222 1245678999998 5555555 58999999875

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=7.7e-16  Score=145.61  Aligned_cols=221  Identities=20%  Similarity=0.297  Sum_probs=162.1

Q ss_pred             CeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCccccc
Q 010748          180 NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIK  259 (502)
Q Consensus       180 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  259 (502)
                      .|.+|...+     .|++|       +.+|.+||+|+.|-.+.|||.-..                          +...
T Consensus        45 eL~GH~GCV-----N~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~--------------------------Kllh   86 (758)
T KOG1310|consen   45 ELTGHTGCV-----NCLEW-------NADGELLASGSDDTRLIVWDPFEY--------------------------KLLH   86 (758)
T ss_pred             hhcccccee-----cceee-------cCCCCEEeecCCcceEEeecchhc--------------------------ceee
Confidence            455565444     68888       689999999999999999997521                          2333


Q ss_pred             ccccCcccceeeEEeccCC-CcEEEEEecCCcEEEEeCCCC----------eeeEeeccCCCCeEEEEEcCCCCcEEEEE
Q 010748          260 YKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       260 ~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v~vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  328 (502)
                      ....+|...|.++.|-|.. ..+++||+.|..|+|+|+...          ...+.+..|...|..|+..|.+++.+.++
T Consensus        87 sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa  166 (758)
T KOG1310|consen   87 SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA  166 (758)
T ss_pred             eeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe
Confidence            4456999999999999863 348899999999999999842          34455677999999999999999999999


Q ss_pred             eCCCcEEEEecCCCCCccceE----------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC------C
Q 010748          329 SFDRSVVMKDARISTHSGFKW----------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS------T  392 (502)
Q Consensus       329 s~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~------~  392 (502)
                      +.||+|+-+|+|.+.......          ..--...|+..+|..+++|++|+.+-..++||.|........      .
T Consensus       167 sEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~  246 (758)
T KOG1310|consen  167 SEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC  246 (758)
T ss_pred             cCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence            999999999999754322111          111346789999999999999999999999996543221100      0


Q ss_pred             ---CCccceEE-eccC-----------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          393 ---SQQSSFTL-HAHD-----------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       393 ---~~~~~~~~-~~h~-----------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                         .-.++..+ .+|-           ..++-+.|+|+|..+|++-+.+ .|++||+...+.
T Consensus       247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~  307 (758)
T KOG1310|consen  247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKS  307 (758)
T ss_pred             CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence               00112222 2222           1256788999997777776655 599999988774

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.67  E-value=3.1e-15  Score=132.93  Aligned_cols=209  Identities=20%  Similarity=0.292  Sum_probs=166.6

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~  341 (502)
                      -..+|+|.+|+++ +..+|.+.....|.||.....   +..++++.|...|++++|+|.. +.|++++.|...++|....
T Consensus         9 ~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence            3478999999999 779999999999999987655   4788999999999999999999 8899999999999999854


Q ss_pred             C---CCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          342 S---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       342 ~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      +   +....+..+....+++.|+|.. +.|++|+....|.+|-+.....-.     .....-..+...|+++.|+|++ -
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhpnn-V  159 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHPNN-V  159 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccCCc-c
Confidence            3   2344567889999999999975 589999999999998887642211     1111233466789999999987 8


Q ss_pred             EEEEEeCCCcEEEEECCCC----C----------e--eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          419 LLATGSTDKMVKLWDLSNN----Q----------P--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~----~----------~--~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      +|++|+.|+.++||..--.    +          |  .++.......+.|..+.|+|+|. .|+-.+.|+.+.+=|....
T Consensus       160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCC
Confidence            9999999999999974210    0          0  12333335678899999999999 6998999999999998766


Q ss_pred             c
Q 010748          483 A  483 (502)
Q Consensus       483 ~  483 (502)
                      .
T Consensus       239 ~  239 (361)
T KOG1523|consen  239 S  239 (361)
T ss_pred             c
Confidence            5

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1e-14  Score=131.56  Aligned_cols=241  Identities=18%  Similarity=0.213  Sum_probs=161.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++.-..+|+++.|-.|+||+-.. .+  +                        ..........|+|++|-|.+...|+.|
T Consensus       107 hqH~~~fava~nddvVriy~kss-t~--p------------------------t~Lks~sQrnvtclawRPlsaselavg  159 (445)
T KOG2139|consen  107 HQHIIAFAVATNDDVVRIYDKSS-TC--P------------------------TKLKSVSQRNVTCLAWRPLSASELAVG  159 (445)
T ss_pred             chhhhhhhhhccCcEEEEeccCC-CC--C------------------------ceecchhhcceeEEEeccCCcceeeee
Confidence            55556688999999999998653 11  0                        001112446799999999988899999


Q ss_pred             ecCCcEEEEeCCCC----ee----------eEeeccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCccceEe
Q 010748          286 SADKQVKIWDVAAG----KC----------NLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       286 s~dg~v~vwd~~~~----~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~  350 (502)
                      +.. -|++|.....    +.          +....+| .+|++|+|+++| ..+++++. +..|.|||..++......+.
T Consensus       160 Cr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~  236 (445)
T KOG2139|consen  160 CRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPK  236 (445)
T ss_pred             ecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccccc
Confidence            885 4999986422    11          1122344 689999999999 66666654 67899999999988776667


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      ..+.+.-+.|+|++. .+++++-|+..++|.....        ... .......+.|...+|+|.|..+|++++..-.++
T Consensus       237 glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~--------wt~-erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQS--------WTK-ERWILGSGRVQTACWSPCGSFLLFACSGSPRLY  306 (445)
T ss_pred             CCCceeeEEEcCCCC-EEEEecccceeeeehhccc--------cee-cceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence            778899999999987 7888888999999965543        111 122223458999999999977777776554443


Q ss_pred             EEECCCCCe-----------eEEEEe---------cCCCCcEEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCC
Q 010748          431 LWDLSNNQP-----------SCIASR---------NPKAGAVFSVAFSEDSPFVLAIGGSK--------GKLEIWDTLSD  482 (502)
Q Consensus       431 vwd~~~~~~-----------~~~~~~---------~~~~~~v~~~~~spd~~~ll~sg~~d--------g~i~vwd~~~~  482 (502)
                      -..+....+           ..+..+         ....+.+.+++|.|.|.| ||+.-..        +.|.+||....
T Consensus       307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEcCCchhhhhhhhhhhhccccc
Confidence            322221110           011111         112467899999999997 5543322        23667777665


Q ss_pred             ccccc
Q 010748          483 AGISN  487 (502)
Q Consensus       483 ~~~~~  487 (502)
                      ..+.-
T Consensus       386 p~vel  390 (445)
T KOG2139|consen  386 PPVEL  390 (445)
T ss_pred             CceEE
Confidence            54433

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.67  E-value=3.4e-16  Score=145.28  Aligned_cols=279  Identities=18%  Similarity=0.162  Sum_probs=203.8

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010748          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE  222 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~  222 (502)
                      ..+.+..+|+.|+.|+..|   +|-...|....     |  |..+.+......+.|+       .+.+++|++- ...++
T Consensus       133 Y~~~ytrnGrhlllgGrKG---HlAa~Dw~t~~-----L--~~Ei~v~Etv~Dv~~L-------Hneq~~AVAQ-K~y~y  194 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKG---HLAAFDWVTKK-----L--HFEINVMETVRDVTFL-------HNEQFFAVAQ-KKYVY  194 (545)
T ss_pred             eeeeecCCccEEEecCCcc---ceeeeecccce-----e--eeeeehhhhhhhhhhh-------cchHHHHhhh-hceEE
Confidence            4567889999999998777   45555554332     2  2222232333445554       5688888874 57899


Q ss_pred             EeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeee
Q 010748          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  302 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~  302 (502)
                      |||-..                            .-.+.+..| ..|..|.|.|. -.+|++++..|.++.-|+.+|+.+
T Consensus       195 vYD~~G----------------------------tElHClk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklV  244 (545)
T KOG1272|consen  195 VYDNNG----------------------------TELHCLKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLV  244 (545)
T ss_pred             EecCCC----------------------------cEEeehhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhh
Confidence            998652                            222233333 67999999998 568999999999999999999999


Q ss_pred             EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEEC
Q 010748          303 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       303 ~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~  382 (502)
                      ..+..-.+.+..|+-+|-+ .++-+|..+|+|.+|.............|.++|.++++.+.|. ++++.+.|..|+|||+
T Consensus       245 a~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  245 ASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDL  322 (545)
T ss_pred             HHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeee
Confidence            9998888999999999998 7899999999999999999998888899999999999999765 8999999999999999


Q ss_pred             CCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE-CCCCCeeEEEEe--cCCCCcEEEEEEcC
Q 010748          383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD-LSNNQPSCIASR--NPKAGAVFSVAFSE  459 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd-~~~~~~~~~~~~--~~~~~~v~~~~~sp  459 (502)
                      |+.         ..+.+... ..+...++||..|  +| +++....|.||. .-.+.+.+-..+  ....++|..+.|+|
T Consensus       323 R~~---------~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP  389 (545)
T KOG1272|consen  323 RNF---------YQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP  389 (545)
T ss_pred             ccc---------cccceeec-CCCcccccccccc--ce-eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence            987         33444443 4567788888743  44 445555799994 322111111111  22245899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          460 DSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       460 d~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      -.. +|..|...|.-.|.=...|+..
T Consensus       390 ~ED-vLGIGH~~G~tsilVPGsGePN  414 (545)
T KOG1272|consen  390 YED-VLGIGHAGGITSILVPGSGEPN  414 (545)
T ss_pred             HHH-eeeccccCCceeEeccCCCCCC
Confidence            776 6777777775555444555543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=3.1e-15  Score=141.16  Aligned_cols=183  Identities=16%  Similarity=0.234  Sum_probs=146.2

Q ss_pred             CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      ...|+.++.||.+.+.+ +.++.-+.+..|.+.+.|-.|+|+| .-|++++.||.|++|.... -..........+|.|+
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCA  151 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEE
Confidence            34788899999999988 6688888899999999999999999 7899999999999998543 2223344567789999


Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +|.|++.+.+++.+  +.+.+=.+...         ..+....+|.+-|.++.|++.. .++++|+.|-..+|||.... 
T Consensus       152 ~W~p~S~~vl~c~g--~h~~IKpL~~n---------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~-  218 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQG--GHISIKPLAAN---------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA-  218 (737)
T ss_pred             EECCCCCceEEecC--CeEEEeecccc---------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc-
Confidence            99999887776654  55666555543         5667889999999999999987 99999999999999998654 


Q ss_pred             eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                        .++....|..+|++++|.|+.  +++.++.+ ++++=..+.|
T Consensus       219 --~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R~~~p~~G  257 (737)
T KOG1524|consen  219 --NLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TARFSSPRVG  257 (737)
T ss_pred             --ccccCChhccceeeeeecccc--ceeeeeee-eeeecCCCcc
Confidence              367778899999999999994  46666543 5654333333

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=1.9e-14  Score=131.23  Aligned_cols=213  Identities=16%  Similarity=0.190  Sum_probs=170.3

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe----eeEeeccCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEE
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMK  337 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~i~iw  337 (502)
                      ..+.+|..++....   .|++|-.+|.+.+|....+.    .+..+..+ ..+..|.-++..+.++++|+..  ..+.+|
T Consensus       103 l~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  103 LGTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             cccccccchhhcCC---EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence            34567777776543   78889999999999988442    23334333 5677788888887888889999  899999


Q ss_pred             ecCCCCCccc---------eEeecCCeeEEEeCCC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748          338 DARISTHSGF---------KWAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       338 d~~~~~~~~~---------~~~~~~~v~~v~~~~~-~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      |+.+.+.+-.         -...+-.++.+.|-+. ..+.|++++.-+.|++||.+.+        .+|+..+.....++
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~i  250 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPI  250 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcc
Confidence            9987632211         1122345778888774 1468999999999999999987        58999999889999


Q ss_pred             eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +++...|.+ +++++|..-|.+..||++.++. ....+.+..|.|+++..+|.++ +||++|-|..|||+|+.+.+++..
T Consensus       251 s~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  251 SSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             eeeeecCCC-cEEEEecccchhheecccCcee-eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhh
Confidence            999999998 9999999999999999999873 3444788899999999999999 599999999999999999888877


Q ss_pred             cccC
Q 010748          488 RFSK  491 (502)
Q Consensus       488 ~~~~  491 (502)
                      .|-.
T Consensus       328 vYvK  331 (412)
T KOG3881|consen  328 VYVK  331 (412)
T ss_pred             hhhh
Confidence            6643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.8e-14  Score=135.11  Aligned_cols=286  Identities=15%  Similarity=0.173  Sum_probs=191.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      -++...-+.+.++|||++|++.+...  -.+++|.+..-..   .+-.|-    .+-+..+..+      +.|-..++.-
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YK--P~ikvydlanLSL---KFERhl----Dae~V~feiL------sDD~SK~v~L  112 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYK--PQIKVYDLANLSL---KFERHL----DAEVVDFEIL------SDDYSKSVFL  112 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccC--CceEEEEccccee---eeeecc----cccceeEEEe------ccchhhheEe
Confidence            35667788999999999998877665  2566666653322   222333    3333333333      4444445555


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      ..|.+|.+-.-..                         .....     .-...-..++++.-.. =|++++....|+-++
T Consensus       113 ~~DR~IefHak~G-------------------------~hy~~-----RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlN  161 (703)
T KOG2321|consen  113 QNDRTIEFHAKYG-------------------------RHYRT-----RIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLN  161 (703)
T ss_pred             ecCceeeehhhcC-------------------------eeeee-----ecCcCCccccccCCCc-cEEEeecCcceEEEE
Confidence            5677776643211                         00000     0112233455544423 344455556799999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe------ec-----CCeeEEEeCCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA------VA-----ADVESLAWDPHA  364 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~-----~~v~~v~~~~~~  364 (502)
                      +..|+.+..|....+.++++..++-. .+|++|+.+|.|-+||.|.......+..      +.     ..|+++.|+.+|
T Consensus       162 LEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g  240 (703)
T KOG2321|consen  162 LEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG  240 (703)
T ss_pred             ccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc
Confidence            99999999998888999999999988 8999999999999999998765543221      22     239999999864


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                       ..+++|+..|.|.|||+|..        ...+..-+...-+|..+.|.+.+..--+.......++|||-.++++.  ..
T Consensus       241 -L~~aVGts~G~v~iyDLRa~--------~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~--as  309 (703)
T KOG2321|consen  241 -LHVAVGTSTGSVLIYDLRAS--------KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM--AS  309 (703)
T ss_pred             -eeEEeeccCCcEEEEEcccC--------CceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCce--ee
Confidence             57999999999999999987        23333444556789999998864233333344567999999999843  33


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ... ...+..+++-|++. ++.++..++.+..|=+..
T Consensus       310 iEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  310 IEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccc
Confidence            332 34588999999987 688888888777766544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=2.4e-14  Score=143.37  Aligned_cols=212  Identities=16%  Similarity=0.102  Sum_probs=137.1

Q ss_pred             CCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748          204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      .|||+|+.||.++.+   ..|++||+.++...                         ....+.+|   ...++|+|++..
T Consensus       210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------------~l~~~~g~---~~~~~wSPDG~~  261 (429)
T PRK01742        210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------------VVASFRGH---NGAPAFSPDGSR  261 (429)
T ss_pred             eEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------------------------EEecCCCc---cCceeECCCCCE
Confidence            338999999987654   47999999753211                         01112233   346899999654


Q ss_pred             EEEEEecCCcEEEE--eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748          281 ILASASADKQVKIW--DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       281 ~l~sgs~dg~v~vw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      ++++.+.+|.+.||  |+.+++. ..+..+...+.+..|+|++..+++++..+|...||++...........+..  .+.
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~  338 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSA  338 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCc
Confidence            44444578876555  6665553 456667777889999999944555555788889998765332222222222  457


Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      .|+|++. .++..+.++ +.+||+.++.         .. .+..+ ....++.|+|++ .+|++++.++.+.+|.+....
T Consensus       339 ~~SpDG~-~ia~~~~~~-i~~~Dl~~g~---------~~-~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~  404 (429)
T PRK01742        339 QISADGK-TLVMINGDN-VVKQDLTSGS---------TE-VLSST-FLDESPSISPNG-IMIIYSSTQGLGKVLQLVSAD  404 (429)
T ss_pred             cCCCCCC-EEEEEcCCC-EEEEECCCCC---------eE-EecCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECC
Confidence            8999887 455555554 6669998762         11 11111 123567899998 888888889988888764322


Q ss_pred             eeEEEEecCCCCcEEEEEEcCC
Q 010748          439 PSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ......+..|.+.+...+|+|-
T Consensus       405 G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        405 GRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCceEEccCCCCCCCCcccCCC
Confidence            1246666677788889999985

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=3.1e-14  Score=142.59  Aligned_cols=203  Identities=15%  Similarity=0.134  Sum_probs=135.5

Q ss_pred             cCcccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEE-EeCCCcEEE
Q 010748          263 GSHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLS-GSFDRSVVM  336 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s-~s~dg~i~i  336 (502)
                      ..|...+.+.+|+|++. .|+.++.+   ..|++||+.+++.  +..+.+|   ..+++|+|++ +.|+. .+.+|.+.|
T Consensus       200 t~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG-~~La~~~~~~g~~~I  274 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDG-SRLAFASSKDGVLNI  274 (429)
T ss_pred             ccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCC-CEEEEEEecCCcEEE
Confidence            35778899999999954 66666543   3699999988753  3334443   3468999999 55554 457887666


Q ss_pred             E--ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748          337 K--DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       337 w--d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      |  |+.++.... ...+...+....|+|++..+++++..+|...+|++....        .....+ .+..  .++.|+|
T Consensus       275 y~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~Sp  342 (429)
T PRK01742        275 YVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--------GGASLV-GGRG--YSAQISA  342 (429)
T ss_pred             EEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--------CCeEEe-cCCC--CCccCCC
Confidence            5  555544322 334455678899999988666666678888888876531        112222 3333  4578999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC--CCccccccc
Q 010748          415 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL--SDAGISNRF  489 (502)
Q Consensus       415 ~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~--~~~~~~~~~  489 (502)
                      ++ ..|+.++.++ +.+||+.+++...+.  ...  ...++.|+|+|++ |++++.+|.+.+|.+.  ++..++++.
T Consensus       343 DG-~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        343 DG-KTLVMINGDN-VVKQDLTSGSTEVLS--STF--LDESPSISPNGIM-IIYSSTQGLGKVLQLVSADGRFKARLP  412 (429)
T ss_pred             CC-CEEEEEcCCC-EEEEECCCCCeEEec--CCC--CCCCceECCCCCE-EEEEEcCCCceEEEEEECCCCceEEcc
Confidence            98 7777777655 666999888743222  111  2356789999995 7777788888888763  455555443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=4e-14  Score=145.73  Aligned_cols=311  Identities=14%  Similarity=0.171  Sum_probs=192.2

Q ss_pred             CCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          137 EDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      +|...+..++.++.. .++++|+.+|   +++||....-.+........-... ..+...++..       -+.++.+|+
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DG---tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-------~~~~~~~Av 1115 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDG---TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-------CGNGDQFAV 1115 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCc---eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe-------ccCCCeEEE
Confidence            567777788877665 9999999887   789998876554211111111111 1222233333       257999999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc-EEEEEecCCcEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN-ILASASADKQVKI  293 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~sgs~dg~v~v  293 (502)
                      |+.||.|++..++..........                  .............|...+|....+. .|+.+..-+.|..
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~------------------~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVAT------------------QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred             EcCCCeEEEEEccccccccceee------------------eeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence            99999999999986321111000                  0001111112223444455443333 7888888899999


Q ss_pred             EeCCCCeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--ecCCeeEEEeCCCCC--CE
Q 010748          294 WDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHAE--HS  367 (502)
Q Consensus       294 wd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~--~~  367 (502)
                      ||++......+++  ...+.|++++.+|.+ +.+++|+..|.+.+||+|-+..+. .|.  +..+++.+..+|..+  ..
T Consensus      1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~-sw~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPIL-SWEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred             ecchhhhhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceee-cccCcccCCcceEEeeccCCCCce
Confidence            9998776655553  235789999999999 899999999999999999776554 443  456788887777543  33


Q ss_pred             EE-EEe-CCCcEEEEECCCCCCCCCCCC--Cccc--eEEe------ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          368 FV-VSL-EDGTIKGFDIRTAKSDPDSTS--QQSS--FTLH------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       368 ~~-~~~-~dg~v~i~d~~~~~~~~~~~~--~~~~--~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      .+ +|. ..+.|.+|++.++........  ..+.  ....      .+.-......+. .+..++++|+.|..|+.||..
T Consensus      1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             EEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCCceeeecCCccceeeccCC
Confidence            33 444 578899999998743111000  0000  0000      011111222222 234799999999999999975


Q ss_pred             CCCee------------------------------------------------------EEEEecCCCCcEEEEEEcCCC
Q 010748          436 NNQPS------------------------------------------------------CIASRNPKAGAVFSVAFSEDS  461 (502)
Q Consensus       436 ~~~~~------------------------------------------------------~~~~~~~~~~~v~~~~~spd~  461 (502)
                      .....                                                      .......|..+|+.+++....
T Consensus      1335 ~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~ 1414 (1431)
T KOG1240|consen 1335 RPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSE 1414 (1431)
T ss_pred             CcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccC
Confidence            42110                                                      000012356788888887666


Q ss_pred             CcEEEEEeCCCcEEEEE
Q 010748          462 PFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       462 ~~ll~sg~~dg~i~vwd  478 (502)
                      .-+|++++.+|.|+||.
T Consensus      1415 q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1415 QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccEEEEecCCCeeeecC
Confidence            55799999999999994

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.8e-13  Score=136.97  Aligned_cols=119  Identities=18%  Similarity=0.298  Sum_probs=99.6

Q ss_pred             cCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC--C--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748          263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~--~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd  338 (502)
                      ..|+..++|.+++|. +.++|+|..||.|.+|.--.  .  ...+.+.-|...|.++.|+++| .+|++|+..|.+.+|.
T Consensus       202 ~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  202 VHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQ  279 (792)
T ss_pred             hhhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEe
Confidence            357778999999999 56999999999999996332  1  2334566789999999999999 8999999999999999


Q ss_pred             cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~  385 (502)
                      +.+++ ...+....++|..+.++|++. +.++...|+.|.+....+.
T Consensus       280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  280 LETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             ecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccch
Confidence            99988 555778899999999999876 6777778999998877443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=2.7e-14  Score=147.02  Aligned_cols=224  Identities=19%  Similarity=0.268  Sum_probs=165.2

Q ss_pred             ccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEE
Q 010748          256 SSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       256 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  328 (502)
                      ......+..|...|..++.++....+++|||.||+|++|++..-       ++..++......+.++...+.+ +.++++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVS 1116 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEE
Confidence            44556677899999999999987789999999999999998631       3344454457789999999988 889999


Q ss_pred             eCCCcEEEEecCCCCCccc--e------EeecCCe-eEEEeCCCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCccce
Q 010748          329 SFDRSVVMKDARISTHSGF--K------WAVAADV-ESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF  398 (502)
Q Consensus       329 s~dg~i~iwd~~~~~~~~~--~------~~~~~~v-~~v~~~~~~~-~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  398 (502)
                      +.||.|++.++........  .      ....+.+ ..-+|..... ..++.++..+.|..||+++.         ...+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~---------~~~w 1187 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR---------HDAW 1187 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh---------hhHH
Confidence            9999999999875211110  0      0112223 3334443333 37888999999999999987         3333


Q ss_pred             EE--eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCC---CcEEEEEe-CCC
Q 010748          399 TL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGG-SKG  472 (502)
Q Consensus       399 ~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~---~~ll~sg~-~dg  472 (502)
                      ++  ....+.|++++.+|.+ .++++|+..|.+.+||++-+.+.+...++.+ .+|+.+..+|-.   .+.+++|. ..+
T Consensus      1188 ~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             hhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCC
Confidence            33  3345789999999998 8999999999999999999887776666554 788888887654   33344444 567


Q ss_pred             cEEEEECCCCccccccccC
Q 010748          473 KLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       473 ~i~vwd~~~~~~~~~~~~~  491 (502)
                      .|.+|++.++.+-...+..
T Consensus      1266 evs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             ceeeeecccCcceEEEEcC
Confidence            8999999999776555544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=5.3e-15  Score=139.77  Aligned_cols=204  Identities=14%  Similarity=0.182  Sum_probs=142.3

Q ss_pred             cccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEee
Q 010748          146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD  225 (502)
Q Consensus       146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwd  225 (502)
                      .=.|.+--|++|-..+     .|+.++........|+.........-.+|+.|++-      +...++++-.+|.+++||
T Consensus       180 ~a~~~g~dllIGf~tG-----qvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg------~~~~Fl~a~~sGnlyly~  248 (636)
T KOG2394|consen  180 TATPKGLDLLIGFTTG-----QVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG------SDSLFLVAHASGNLYLYD  248 (636)
T ss_pred             ccCCCCcceEEeeccC-----ceEEecchhhHHHHhhhhcccccccceEEEEEEeC------CCceEEEEEecCceEEee
Confidence            3356777888888777     44444333322224454444444566799999843      566777777889999998


Q ss_pred             CCCCCCcCc-ceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEe
Q 010748          226 LDVIDEVQP-HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT  304 (502)
Q Consensus       226 l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~  304 (502)
                      ......... ....-.....-+.-..+.++...+...+.--...|+.++|+|+ +.+||+.|.||.++|+|..+..++..
T Consensus       249 ~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~  327 (636)
T KOG2394|consen  249 KEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLGV  327 (636)
T ss_pred             ccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHHH
Confidence            743322111 1100000000000001111112334444444569999999998 56999999999999999999988888


Q ss_pred             eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       305 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      ++..-+...|++|+|+| +++++|+.|-.|.||.+...+.+..-.+|.+.|..|+|+|
T Consensus       328 mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  328 MKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            88778899999999999 9999999999999999999888887789999999999997

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=2e-12  Score=117.40  Aligned_cols=234  Identities=15%  Similarity=0.233  Sum_probs=164.5

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d-  218 (502)
                      ..+..+.|..+..+|..|+.+|    .++|..+.-..     +.|..  ..+... ++-+     |  ...++|..+.+ 
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G----yk~~~~~~~~k-----~~~~~--~~~~~I-vEmL-----F--SSSLvaiV~~~q   66 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG----YKIFSCSPFEK-----CFSKD--TEGVSI-VEML-----F--SSSLVAIVSIKQ   66 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc----eeEEecCchHH-----hhccc--CCCeEE-EEee-----c--ccceeEEEecCC
Confidence            3456667888999999998886    57776654432     11111  111111 1111     1  34566655544 


Q ss_pred             -CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          219 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       219 -g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                       ..+++.++...                            ...........|.++.++.+   .|+++-.+ .|.|||++
T Consensus        67 pr~Lkv~~~Kk~----------------------------~~ICe~~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~  114 (391)
T KOG2110|consen   67 PRKLKVVHFKKK----------------------------TTICEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYDIK  114 (391)
T ss_pred             CceEEEEEcccC----------------------------ceEEEEecCCceEEEEEccc---eEEEEEcc-cEEEEecc
Confidence             34666665311                            11111124578999999976   56666664 49999999


Q ss_pred             CCeeeEeecc---CCCCeEEEEEcCCCCcEEEEE--eCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe
Q 010748          298 AGKCNLTLEH---HTDKVQAVAWNHHSPQILLSG--SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       298 ~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~  372 (502)
                      +.+.++++..   +...+.++.+++.+ .+|+--  ...|.|.+||+.+-+.......|.+.+.+++|+++|. ++++++
T Consensus       115 ~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATAS  192 (391)
T KOG2110|consen  115 DMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATAS  192 (391)
T ss_pred             cceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEec
Confidence            9999998853   44557777777766 555542  2368999999999888887889999999999999876 899999


Q ss_pred             CCCc-EEEEECCCCCCCCCCCCCccceEEeccC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          373 EDGT-IKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       373 ~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      +.|+ ||+|.+.++         ..++.+....  ..|.+++|+|++ .+|++.|..++|++|.+..
T Consensus       193 eKGTVIRVf~v~~G---------~kl~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  193 EKGTVIRVFSVPEG---------QKLYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             cCceEEEEEEcCCc---------cEeeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecc
Confidence            9996 799999887         5666665433  468899999998 8999999999999998754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=8.1e-15  Score=135.08  Aligned_cols=192  Identities=19%  Similarity=0.277  Sum_probs=145.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +.+|..|++|+.||++|||+.....                           .......|...|.+|.|+|+ +.+|++-
T Consensus       153 ~~~gs~latgg~dg~lRv~~~Ps~~---------------------------t~l~e~~~~~eV~DL~FS~d-gk~lasi  204 (398)
T KOG0771|consen  153 NGDGSKLATGGTDGTLRVWEWPSML---------------------------TILEEIAHHAEVKDLDFSPD-GKFLASI  204 (398)
T ss_pred             cCCCCEeeeccccceEEEEecCcch---------------------------hhhhhHhhcCccccceeCCC-CcEEEEe
Confidence            7899999999999999999976532                           22234478999999999999 6699999


Q ss_pred             ecCCcEEEEeCCCCeeeEeec--cCCCCeEEEEEcCCC--Cc-EEEEE-eCCCcEEEEecCCCCCc-----cceEeecCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHS--PQ-ILLSG-SFDRSVVMKDARISTHS-----GFKWAVAAD  354 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~--~~-~l~s~-s~dg~i~iwd~~~~~~~-----~~~~~~~~~  354 (502)
                      +.| ..+||+++++.++....  .-......+.|+.++  +. ++++. ..-+.|+.|++......     .........
T Consensus       205 g~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s  283 (398)
T KOG0771|consen  205 GAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS  283 (398)
T ss_pred             cCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence            999 89999999997766654  223455667777654  12 33332 33467777776543321     111223457


Q ss_pred             eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      |.+++.+++|. +++.|+.+|.|.+++..+.        ....+...+|...|+.+.|+|+. +++++.+.+....|..+
T Consensus       284 iSsl~VS~dGk-f~AlGT~dGsVai~~~~~l--------q~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  284 ISSLAVSDDGK-FLALGTMDGSVAIYDAKSL--------QRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKL  353 (398)
T ss_pred             ceeEEEcCCCc-EEEEeccCCcEEEEEecee--------eeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEE
Confidence            99999999876 8999999999999999887        34455567899999999999997 89999999998888876


Q ss_pred             CC
Q 010748          435 SN  436 (502)
Q Consensus       435 ~~  436 (502)
                      .-
T Consensus       354 ~v  355 (398)
T KOG0771|consen  354 AV  355 (398)
T ss_pred             ee
Confidence            54

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.59  E-value=1.5e-14  Score=141.47  Aligned_cols=296  Identities=19%  Similarity=0.311  Sum_probs=210.6

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d  218 (502)
                      +..+.++.++|.|+-+|.|+..      .+|+.+......+..+.||.  .|-....+.|.+     +|...+-++.+..
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~-----h~a~~~wiVsts~   90 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSP-----HPAKPYWIVSTSN   90 (1081)
T ss_pred             cCcccceeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--Ccchhcceeccc-----CCCCceeEEecCc
Confidence            4578999999999999999855      56666666666668888884  233334455532     2345555666556


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~  298 (502)
                      ..-.||++...                        ....+...+.+|+.+|+.+.|+|+.+.+|++++.|-.|..||+++
T Consensus        91 qkaiiwnlA~s------------------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS  146 (1081)
T KOG0309|consen   91 QKAIIWNLAKS------------------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS  146 (1081)
T ss_pred             chhhhhhhhcC------------------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence            66669998632                        235566677899999999999999999999999999999999987


Q ss_pred             C-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc-eEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          299 G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       299 ~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      . .++..+..-......++|+...++ +++.+..+.|++||+|.+..+.. ..++...+..+.|+..-...+.+++.||+
T Consensus       147 p~~p~ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t  225 (1081)
T KOG0309|consen  147 PHRPFYSTSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT  225 (1081)
T ss_pred             CCcceeeeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence            6 455555544556778999998855 55567788999999998776543 33466677788887765557889999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC-cEEE---------EECCCCCeeEEEEec
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-MVKL---------WDLSNNQPSCIASRN  446 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg-~i~v---------wd~~~~~~~~~~~~~  446 (502)
                      |++||..+..        ...........+|..-++.|.|..+++--...+ .+.+         |+..++ +..+..+.
T Consensus       226 vkfw~y~kSt--------~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~  296 (1081)
T KOG0309|consen  226 VKFWDYSKST--------TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFV  296 (1081)
T ss_pred             eeeecccccc--------cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC-Ccceeeec
Confidence            9999987652        222233344567777777777654444322222 3333         333332 34788999


Q ss_pred             CCCCcEEEEEEcCC---------CCcEEEEEeCCCcEEEEECCC
Q 010748          447 PKAGAVFSVAFSED---------SPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       447 ~~~~~v~~~~~spd---------~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +|...|....|...         ..|-|+|-+.|..+++|-+.+
T Consensus       297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            99988877766432         246799999999999999865

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=2.8e-13  Score=123.72  Aligned_cols=214  Identities=13%  Similarity=0.155  Sum_probs=160.1

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      ...|++|..+|.+.+|....++....                       +...+..+ ..+..+.-++...+++|+|+..
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss-----------------------~l~~la~g-~g~~~~r~~~~~p~Iva~GGke  170 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSS-----------------------KLIKLATG-PGLYDVRQTDTDPYIVATGGKE  170 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccc-----------------------cceeeecC-CceeeeccCCCCCceEecCchh
Confidence            44677778899999999875442210                       01111112 5677777777778899999999


Q ss_pred             --CcEEEEeCCCCeeeEeeccC---------CCCeEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCCccceEe-ecCC
Q 010748          289 --KQVKIWDVAAGKCNLTLEHH---------TDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSGFKWA-VAAD  354 (502)
Q Consensus       289 --g~v~vwd~~~~~~~~~~~~h---------~~~v~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~  354 (502)
                        ..+++||+.+.+.+.+-+.-         .-.++.+.|-+.  . +.|++++.-+.+++||.+.++.+...+. ...+
T Consensus       171 ~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~  249 (412)
T KOG3881|consen  171 NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLENP  249 (412)
T ss_pred             cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence              88999999988665543321         124678888876  4 7899999999999999998776654443 4678


Q ss_pred             eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      +.++...|.+. ++++|..-|.+..||+|.+        ......+.+..+.|++|..+|.. .+|++||-|..|||+|+
T Consensus       250 is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~--------kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  250 ISSTGLTPSGN-FIYTGNTKGQLAKFDLRGG--------KLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDI  319 (412)
T ss_pred             ceeeeecCCCc-EEEEecccchhheecccCc--------eeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeec
Confidence            99999999764 8999999999999999987        23444578889999999999987 89999999999999999


Q ss_pred             CCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          435 SNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       435 ~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      .+.++......   ...++++.+.++
T Consensus       320 ktrkll~kvYv---Ks~lt~il~~~~  342 (412)
T KOG3881|consen  320 KTRKLLHKVYV---KSRLTFILLRDD  342 (412)
T ss_pred             ccchhhhhhhh---hccccEEEecCC
Confidence            99663222222   244666666554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.56  E-value=7.2e-12  Score=121.74  Aligned_cols=279  Identities=14%  Similarity=0.164  Sum_probs=175.1

Q ss_pred             cceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC----CCcEEEeeCCCC-CCcCccee
Q 010748          163 VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----EPAIEIWDLDVI-DEVQPHVI  237 (502)
Q Consensus       163 ~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~----dg~I~iwdl~~~-~~~~~~~~  237 (502)
                      ...|.++.++...+   .|...+......-|..+++       +|++++|.+...    .|.|..|.+... ..+..   
T Consensus        12 ~~gI~~~~~d~~~g---~l~~~~~~~~~~~Ps~l~~-------~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~---   78 (345)
T PF10282_consen   12 GGGIYVFRFDEETG---TLTLVQTVAEGENPSWLAV-------SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL---   78 (345)
T ss_dssp             STEEEEEEEETTTT---EEEEEEEEEESSSECCEEE--------TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE---
T ss_pred             CCcEEEEEEcCCCC---CceEeeeecCCCCCceEEE-------EeCCCEEEEEEccccCCCCEEEEEECCCcceeEE---
Confidence            34677788877766   6665554444455555554       789999988766    478999988642 11111   


Q ss_pred             cCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC-CeeeEe---ec-------
Q 010748          238 LGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLT---LE-------  306 (502)
Q Consensus       238 l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-~~~~~~---~~-------  306 (502)
                                           .............++++|+++.++++...+|+|.++++.. +.....   +.       
T Consensus        79 ---------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~  137 (345)
T PF10282_consen   79 ---------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPN  137 (345)
T ss_dssp             ---------------------EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESS
T ss_pred             ---------------------eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCc
Confidence                                 0011112345567899999664444445689999999986 433222   21       


Q ss_pred             ---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-cc----ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748          307 ---HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       307 ---~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~----~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~  378 (502)
                         .......++.|+|++..++++.-....|.+|++..... ..    .........+.+.|+|++..++++.-.++.|.
T Consensus       138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~  217 (345)
T PF10282_consen  138 PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS  217 (345)
T ss_dssp             TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence               12355789999999944444444456899999987652 11    12234567899999999886667777788999


Q ss_pred             EEECCCCCCCCCCCCCccceEEecc------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC--CCCeeEEEEecCCCC
Q 010748          379 GFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NNQPSCIASRNPKAG  450 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~--~~~~~~~~~~~~~~~  450 (502)
                      +|++......     ...+..+...      ......|+++|++..+.++....++|.+|++.  ++.+..+........
T Consensus       218 v~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~  292 (345)
T PF10282_consen  218 VFDYDPSDGS-----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK  292 (345)
T ss_dssp             EEEEETTTTE-----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS
T ss_pred             EEeecccCCc-----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC
Confidence            9998832110     1222222211      12578899999994445555567889999993  355555555544445


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      ..+.++++|+|++++++...++.|.+|++.
T Consensus       293 ~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  293 FPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            589999999999877776677899999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.56  E-value=7.8e-12  Score=121.40  Aligned_cols=252  Identities=13%  Similarity=0.105  Sum_probs=158.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+|+++.+++.||.|.++|+.+.+.+....                            -.....+++++++|+.+++++
T Consensus        45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~----------------------------~G~~~~~i~~s~DG~~~~v~n   96 (369)
T PF02239_consen   45 SPDGRYLYVANRDGTVSVIDLATGKVVATIK----------------------------VGGNPRGIAVSPDGKYVYVAN   96 (369)
T ss_dssp             TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----------------------------SSEEEEEEE--TTTEEEEEE
T ss_pred             cCCCCEEEEEcCCCeEEEEECCcccEEEEEe----------------------------cCCCcceEEEcCCCCEEEEEe
Confidence            8999999999999999999998654332211                            123467899999977555566


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccC-------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeE
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVES  357 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~  357 (502)
                      ...+.|.++|..+.+.++.+...       ...+.++..+|..+.++++.-..+.|.+.|........ ...........
T Consensus        97 ~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D  176 (369)
T PF02239_consen   97 YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD  176 (369)
T ss_dssp             EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred             cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence            78999999999999998887532       34678888888884455555556888888887764433 23345566788


Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC----------------------------------------------CC
Q 010748          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP----------------------------------------------DS  391 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~----------------------------------------------~~  391 (502)
                      ..|+|++.+++++......|.++|..+.....                                              ..
T Consensus       177 ~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~  256 (369)
T PF02239_consen  177 GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD  256 (369)
T ss_dssp             EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred             cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchh
Confidence            99999887666666667778888876653200                                              00


Q ss_pred             CCCccceEEeccCCCeeEEEEcCCCCCEEEEE----eCCCcEEEEECCCCCeeEEEEecC-CCCcEEEEEEcCCCCcEEE
Q 010748          392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATG----STDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       392 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~----s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~ll~  466 (502)
                      ...+.+..+.....+ .-+..+|++ .++.+.    ...++|.++|..+.+  .+..+.. ....+..+.|+++|+++.+
T Consensus       257 ~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~ef~~dG~~v~v  332 (369)
T PF02239_consen  257 YAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTLK--VVKTITPGPGKRVVHMEFNPDGKEVWV  332 (369)
T ss_dssp             TBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred             hcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCcc--eeEEEeccCCCcEeccEECCCCCEEEE
Confidence            111222333333333 556678988 666666    445889999999885  3344332 2235899999999998777


Q ss_pred             EEeCCC-cEEEEECCCCccccccc
Q 010748          467 IGGSKG-KLEIWDTLSDAGISNRF  489 (502)
Q Consensus       467 sg~~dg-~i~vwd~~~~~~~~~~~  489 (502)
                      +....+ .|.|||..+.+.+.++.
T Consensus       333 S~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  333 SVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEecCCCEEEEEECCCcEEEEEEE
Confidence            766665 89999999999887765

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.56  E-value=2.7e-14  Score=127.36  Aligned_cols=231  Identities=17%  Similarity=0.250  Sum_probs=163.4

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |||+|+++|+.+.- .+.|-|..+.+..+-+.                            --+.|.-|.|..+..++|..
T Consensus        16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~----------------------------cldki~yieW~ads~~ilC~   66 (447)
T KOG4497|consen   16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFL----------------------------CLDKIVYIEWKADSCHILCV   66 (447)
T ss_pred             ECCCCCeeeeeeee-EEEEeccchhhHHHHHH----------------------------HHHHhhheeeeccceeeeee
Confidence            48999999999875 67787876544333221                            13567788999887777888


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  364 (502)
                      ...++.|.+|++....-...+.....++.+++|+|+|..+|.+...+-.|.+|.+.+.+.... ......+..++|+|++
T Consensus        67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg  145 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDG  145 (447)
T ss_pred             eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCC
Confidence            899999999999999888888888899999999999988999999999999999998776542 2234556889999988


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . +.+..+.-.....+.+..-+      ....+..+...+-..+.+.|+|+| ..|+         |||---.-  .+..
T Consensus       146 ~-f~ai~sRrDCkdyv~i~~c~------~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Ley--kv~a  206 (447)
T KOG4497|consen  146 Q-FCAILSRRDCKDYVQISSCK------AWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEY--KVYA  206 (447)
T ss_pred             c-eeeeeecccHHHHHHHHhhH------HHHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhh--eeee
Confidence            7 44444433222222222110      023445555566778999999998 5554         56543221  1112


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      .. ..-.+..++|+|.+++ |+.|+.|+.+||.+--+-+...
T Consensus       207 Ye-~~lG~k~v~wsP~~qf-lavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  207 YE-RGLGLKFVEWSPCNQF-LAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             ee-eccceeEEEeccccce-EEeeccchhhhhhceeeeeehh
Confidence            21 1235888999999994 9999999999997766655543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=5.5e-13  Score=117.64  Aligned_cols=156  Identities=14%  Similarity=0.257  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCcEEEEEeC---------CCcEEEEecCCCCCccceE--eecCCeeEEEeCCCCCCEEEE-EeCCCcEEEE
Q 010748          313 QAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVV-SLEDGTIKGF  380 (502)
Q Consensus       313 ~~l~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~-~~~dg~v~i~  380 (502)
                      ..+.|++.|..+++....         -+...+|.++.........  ...++|..++|+|++..++++ |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            468899999555555541         2346666665544333333  334579999999998755444 4567899999


Q ss_pred             ECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCCeeEEEEecCCCCcEEEEEE
Q 010748          381 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF  457 (502)
Q Consensus       381 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~  457 (502)
                      |++.          ..+..+.  ...+..+.|+|+| ++|++++.   .|.|.+||+++.+  .+.... | ..++.++|
T Consensus        89 d~~~----------~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~-~-~~~t~~~W  151 (194)
T PF08662_consen   89 DVKG----------KKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK--KISTFE-H-SDATDVEW  151 (194)
T ss_pred             cCcc----------cEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE--Eeeccc-c-CcEEEEEE
Confidence            9972          4555553  5678899999998 88888765   3669999999766  343333 3 34789999


Q ss_pred             cCCCCcEEEEEeC-----CCcEEEEECCCCcccc
Q 010748          458 SEDSPFVLAIGGS-----KGKLEIWDTLSDAGIS  486 (502)
Q Consensus       458 spd~~~ll~sg~~-----dg~i~vwd~~~~~~~~  486 (502)
                      +|+|+|++++.+.     |+.++||++. |+.+.
T Consensus       152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             cCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence            9999985554443     7889999985 45543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=3.6e-12  Score=127.41  Aligned_cols=206  Identities=11%  Similarity=0.090  Sum_probs=129.9

Q ss_pred             CcccceeeEEeccCCCcEEEEEe---cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEe
Q 010748          264 SHTDSVLGLAWNKEFRNILASAS---ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs---~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd  338 (502)
                      .+...+.+.+|+|+|. .|+..+   ....|.+|++.+++... +....+.+....|+|+|..++++.+.+|  .|.+||
T Consensus       196 ~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        196 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            3567899999999965 555443   23579999998875432 2223334556899999954544555555  488899


Q ss_pred             cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEE--ECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~--d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... .......+....|+|++..+++++...|...+|  ++.++          ....+..+........|+|+|
T Consensus       274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG  342 (429)
T PRK03629        274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG----------APQRITWEGSQNQDADVSSDG  342 (429)
T ss_pred             CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC----------CeEEeecCCCCccCEEECCCC
Confidence            98765433 233345678899999987555555555555555  55443          223344444556778999998


Q ss_pred             CCEEEEEeC-C--CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc---EEEEECCCCccccccc
Q 010748          417 PNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK---LEIWDTLSDAGISNRF  489 (502)
Q Consensus       417 ~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~---i~vwd~~~~~~~~~~~  489 (502)
                       .+|+..+. +  ..|.+||+.++....+..  .  .......|+|||++ |+.++.++.   +.++++. +...+++.
T Consensus       343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~--~--~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~-G~~~~~l~  414 (429)
T PRK03629        343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLTD--T--FLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTD-GRFKARLP  414 (429)
T ss_pred             -CEEEEEEccCCCceEEEEECCCCCeEEeCC--C--CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC-CCCeEECc
Confidence             66655544 3  358889998887433321  1  22346789999996 555555543   6777773 44444443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.7e-12  Score=129.92  Aligned_cols=200  Identities=16%  Similarity=0.166  Sum_probs=128.2

Q ss_pred             CcccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      .+...+.+.+|+|++. .|+..+..   ..|.+||+.+++... +....+.+.+..|+|++..++++.+.+|...+|.+.
T Consensus       193 ~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        193 SSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             cCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            4667899999999954 66655532   359999999886543 333345567899999995555677888887777553


Q ss_pred             --CCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          341 --ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       341 --~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                        ...... ...+........|+|++..+++++...|...+|.+....        .....+..+.......+|+|+| +
T Consensus       271 ~~~~~~~~-lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--------g~~~~lt~~g~~~~~~~~SpDG-~  340 (427)
T PRK02889        271 ADGSGLRR-LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--------GAAQRVTFTGSYNTSPRISPDG-K  340 (427)
T ss_pred             CCCCCcEE-CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--------CceEEEecCCCCcCceEECCCC-C
Confidence              333222 223344456788999988666666556777777654321        1122222233344567899998 6


Q ss_pred             EEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEEC
Q 010748          419 LLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDT  479 (502)
Q Consensus       419 ~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~--i~vwd~  479 (502)
                      +|+..+.++   .|.+||+.+++...+.   .. .......|+|++++++++....|.  +.+.++
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt---~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVTALT---DT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeEEcc---CC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            776666544   5999999887743322   11 234678999999976666555554  455555

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=5.1e-12  Score=126.32  Aligned_cols=209  Identities=16%  Similarity=0.048  Sum_probs=132.5

Q ss_pred             CCCCCEEEEec---CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          206 REKGNFMAVGS---MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       206 s~~~~~la~g~---~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      ||+|+.||..+   ....|.+|++.++...                         ....   ....+..++|+|++..++
T Consensus       207 SPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------------------~l~~---~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        207 SPDGSKLAYVTFESGRSALVIQTLANGAVR-------------------------QVAS---FPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             cCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EccC---CCCCcCCeEECCCCCEEE
Confidence            89999998754   2457999998753211                         0011   122345689999976555


Q ss_pred             EEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEE--ecCCCCCccceEeecCCeeE
Q 010748          283 ASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMK--DARISTHSGFKWAVAADVES  357 (502)
Q Consensus       283 ~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~  357 (502)
                      ++.+.+|  .|.+||+.+++... +..+...+....|+|++ +.|+.++ .++...+|  ++.++.... ..........
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~  335 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD  335 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence            5555555  48899998886644 43345567889999999 5555444 44555555  555543322 2223344567


Q ss_pred             EEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc---EEEE
Q 010748          358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM---VKLW  432 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~---i~vw  432 (502)
                      ..|+|++..+++++..++  .|.+||+.++.          ...+.. ........|+|+| .+|+.++.++.   +.++
T Consensus       336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~  403 (429)
T PRK03629        336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLTD-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLV  403 (429)
T ss_pred             EEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEeCC-CCCCCCceECCCC-CEEEEEEcCCCceEEEEE
Confidence            899999875555554443  58888987652          222221 1234567899998 77777777654   6777


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ++....   ...+..|.+.+...+|+|-
T Consensus       404 ~~~G~~---~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        404 STDGRF---KARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             ECCCCC---eEECccCCCCcCCcccCCC
Confidence            875544   3445567788888999873

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.5e-12  Score=129.25  Aligned_cols=203  Identities=13%  Similarity=0.096  Sum_probs=135.6

Q ss_pred             CcccceeeEEeccCCCcEEEEEec---CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEe
Q 010748          264 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--i~iwd  338 (502)
                      .|...+.+.+|+|++. .|+..+.   +..|.+||+.+++.. .+..+.+.+.+..|+|+|..++++.+.++.  |.+||
T Consensus       199 ~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  276 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD  276 (435)
T ss_pred             cCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence            5777899999999955 5655543   468999999888653 444566677889999999555667777665  66778


Q ss_pred             cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... ...+........|+|++..+++++..+|  .|+++|+...          ....+..+...+....|+|++
T Consensus       277 ~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG  345 (435)
T PRK05137        277 LRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS----------NPRRISFGGGRYSTPVWSPRG  345 (435)
T ss_pred             CCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC----------CeEEeecCCCcccCeEECCCC
Confidence            87765433 3334445677899999875555554554  5777787653          233444445567778999998


Q ss_pred             CCEEEEEeCC---CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCcc
Q 010748          417 PNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDAG  484 (502)
Q Consensus       417 ~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-----g~i~vwd~~~~~~  484 (502)
                       ..|+..+.+   ..|.+|++..+... ...   ....+....|+|+|++++.++...     ..|.++++..+..
T Consensus       346 -~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        346 -DLIAFTKQGGGQFSIGVMKPDGSGER-ILT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             -CEEEEEEcCCCceEEEEEECCCCceE-ecc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence             666655443   35888898665422 222   122467889999999755554433     2578888865543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.54  E-value=4.2e-13  Score=116.36  Aligned_cols=159  Identities=22%  Similarity=0.296  Sum_probs=126.8

Q ss_pred             CcccceeeEEeccCC--CcEEEEEecCCcEEEEeCCCCe----------eeEeeccCCCCeEEEEEcCCCCcEEEEEeCC
Q 010748          264 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAGK----------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD  331 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~--~~~l~sgs~dg~v~vwd~~~~~----------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d  331 (502)
                      +..+.++|..|.-..  .-+|++|-.+|.|.+||+.++.          .......|..+|.++.|.+.- ..=++|+.+
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGAD  226 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCcc
Confidence            455778888864331  3367788899999999999873          333445689999999998765 556788888


Q ss_pred             CcEEEEecCCCC--Cc--cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748          332 RSVVMKDARIST--HS--GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       332 g~i~iwd~~~~~--~~--~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      ..+..|.+....  ..  ....-....+..+...|+++ ++++++-|+.|++|..++.         .++..+.-|...|
T Consensus       227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl---------~pLAVLkyHsagv  296 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGV  296 (323)
T ss_pred             ccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC---------Cchhhhhhhhcce
Confidence            889999886542  21  11222345688899999865 8999999999999999997         8888999999999


Q ss_pred             eEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748          408 CTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      ++++|+|+. .++|+++.|++|.+|++
T Consensus       297 n~vAfspd~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  297 NAVAFSPDC-ELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEEeCCCC-chhhhccCCceEEeeec
Confidence            999999987 89999999999999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=4.4e-12  Score=127.31  Aligned_cols=200  Identities=17%  Similarity=0.160  Sum_probs=130.4

Q ss_pred             CcccceeeEEeccCCCcEEEEEec---CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEe
Q 010748          264 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd  338 (502)
                      .|...+.+.+|+|++. .|+.++.   ...|.+||+.+++... +..+.+...+..|+|++..++++.+.+|  .|.+||
T Consensus       201 ~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d  278 (433)
T PRK04922        201 RSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD  278 (433)
T ss_pred             cCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence            4667899999999955 6666653   3469999998876533 3334455568899999955556666666  589999


Q ss_pred             cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... ...+.......+|+|++..+++++...|.  |+++++.++         . ...+..+......++|+|++
T Consensus       279 ~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---------~-~~~lt~~g~~~~~~~~SpDG  347 (433)
T PRK04922        279 LGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---------S-AERLTFQGNYNARASVSPDG  347 (433)
T ss_pred             CCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-eEEeecCCCCccCEEECCCC
Confidence            98766433 23333445678999998755555555565  666666554         1 22232333445578999998


Q ss_pred             CCEEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEEECCC
Q 010748          417 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLS  481 (502)
Q Consensus       417 ~~~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d--g~i~vwd~~~  481 (502)
                       +.|+..+.++   .|.+||+.+++...+   . +........|+|+|++++++....  +.|.++++..
T Consensus       348 -~~Ia~~~~~~~~~~I~v~d~~~g~~~~L---t-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        348 -KKIAMVHGSGGQYRIAVMDLSTGSVRTL---T-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             -CEEEEEECCCCceeEEEEECCCCCeEEC---C-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             6666554332   599999988774322   2 222345679999999755555433  3577777744

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=7.8e-12  Score=125.54  Aligned_cols=211  Identities=15%  Similarity=0.098  Sum_probs=131.9

Q ss_pred             CCCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748          203 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       203 ~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      +.|+|+|+.|+..+..   ..|++|++.++...                            .+..+.....+++|+|++.
T Consensus       209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----------------------------LVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----------------------------EeccCCCCccCceECCCCC
Confidence            3448999999987643   46999998753211                            0112233445789999977


Q ss_pred             cEEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-CCCc--EEEEecCCCCCccceEeecCC
Q 010748          280 NILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRS--VVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       280 ~~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~  354 (502)
                      .++++.+.+|  .|++||+.+++. ..+..+.......+|+|++ +.|+.++ .+|.  |.++++.++...... .....
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~  337 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNY  337 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeEEee-cCCCC
Confidence            6666767666  599999988765 4455565566788999999 5555444 4555  556666555433222 22334


Q ss_pred             eeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC---CcE
Q 010748          355 VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD---KMV  429 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d---g~i  429 (502)
                      ....+|+|++..++++...++  .|.+||+.++.         . ..+. +........|+|++ ++|+..+.+   +.|
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~-~~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L  405 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---------V-RTLT-PGSLDESPSFAPNG-SMVLYATREGGRGVL  405 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---------e-EECC-CCCCCCCceECCCC-CEEEEEEecCCceEE
Confidence            557899999875444444333  58999987652         1 1222 23345567999998 655554442   357


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcC
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSE  459 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp  459 (502)
                      .++++....   ...+..+.+.+...+|+|
T Consensus       406 ~~~~~~g~~---~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        406 AAVSTDGRV---RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEECCCCc---eEEcccCCCCCCCCccCC
Confidence            788886543   333333456677778876

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.51  E-value=1.4e-11  Score=108.63  Aligned_cols=244  Identities=15%  Similarity=0.139  Sum_probs=169.0

Q ss_pred             CCC-EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          208 KGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +|. .|+.+-..|.|.++..+.....-.+.-+.                     ...-......++.|++. +..++++-
T Consensus        83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls---------------------~~ki~~~~~lslD~~~~-~~~i~vs~  140 (339)
T KOG0280|consen   83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS---------------------SKKISVVEALSLDISTS-GTKIFVSD  140 (339)
T ss_pred             CccceeeeccccceEEEEeeccceeeeeecccc---------------------hhhhhheeeeEEEeecc-CceEEEEc
Confidence            455 56677778999999875322211111000                     00001114568889988 55788888


Q ss_pred             cCCcEEEEeCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc--eEeecCCeeEEEeCC
Q 010748          287 ADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDP  362 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~  362 (502)
                      .+|.+.+-+......  ++.++.|.-.+....|+...++++++|+.|+.+..||+|.+.....  ...|...|.++.-+|
T Consensus       141 s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~  220 (339)
T KOG0280|consen  141 SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSP  220 (339)
T ss_pred             CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCC
Confidence            889999766555543  3478899999999999999989999999999999999996553221  335788999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee--
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS--  440 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~--  440 (502)
                      ..+.++++|+-|-.|++||.|+.        .++++.-. -.+.|..+.++|.....|+.++.-+-.+|-++..+...  
T Consensus       221 ~~~~~I~TGsYDe~i~~~DtRnm--------~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~  291 (339)
T KOG0280|consen  221 PKPTYIATGSYDECIRVLDTRNM--------GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQ  291 (339)
T ss_pred             CCCceEEEeccccceeeeehhcc--------cCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchh
Confidence            88889999999999999999976        35555443 34889999999964333444444444788887765533  


Q ss_pred             -EEEEecCCCCcEEEEEEcCCCCcEEEEEe-CCCcEE-EEECCCCc
Q 010748          441 -CIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLE-IWDTLSDA  483 (502)
Q Consensus       441 -~~~~~~~~~~~v~~~~~spd~~~ll~sg~-~dg~i~-vwd~~~~~  483 (502)
                       .......|.+-+....|..... +|||++ .|..++ +|-..++.
T Consensus       292 ~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  292 IVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             eeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccCC
Confidence             4455566777777777855544 477754 456644 77665554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.51  E-value=4.6e-12  Score=113.95  Aligned_cols=295  Identities=15%  Similarity=0.214  Sum_probs=179.6

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC--CCee---eeeccc--------cCCCcceeeeecCCCCC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLY---VHHHII--------IPAFPLCMAWLDCPLKD  205 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~--~~l~---~~~~~~--------~~~~~~~~~~~~~~~~~  205 (502)
                      .+-|.++.|..+|.+|++|...|     +|-.|.......  -.++   ..|+..        +......+.|+.-    
T Consensus        25 adiis~vef~~~Ge~LatGdkgG-----RVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~----   95 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGG-----RVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD----   95 (433)
T ss_pred             hcceeeEEeecccceEeecCCCC-----eEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC----
Confidence            45789999999999999998887     666665443311  1122   122211        2223356777631    


Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                       .+...++..+.|.+|++|.+.....                      ++........+-...|++|..-.       .+
T Consensus        96 -~n~a~FLlstNdktiKlWKi~er~~----------------------k~~~~~~~~~~~~~~~~~lr~p~-------~~  145 (433)
T KOG1354|consen   96 -GNLAEFLLSTNDKTIKLWKIRERGS----------------------KKEGYNLPEEGPPGTITSLRLPV-------EG  145 (433)
T ss_pred             -CCccEEEEecCCcceeeeeeecccc----------------------ccccccccccCCCCccceeecee-------ec
Confidence             3466788888999999999863111                      00011111112223344433211       11


Q ss_pred             ecCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--------ecCCee
Q 010748          286 SADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVE  356 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~  356 (502)
                      ..+-.|      .-.|.+.+ .+|+.-|.++.++.+. ..++++ .|=.|.+|.+...........        ...-|+
T Consensus       146 ~~~~~v------ea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT  217 (433)
T KOG1354|consen  146 RHDLEV------EASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT  217 (433)
T ss_pred             ccccee------eeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHh
Confidence            111111      01233333 4688899999999998 666655 577899999875443322221        233588


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC-------CCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      +..|+|..-+.|+.++..|+|++.|+|........       ......--+..--..|+.+.|++.| ++|++-.. -+|
T Consensus       218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltv  295 (433)
T KOG1354|consen  218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTV  295 (433)
T ss_pred             hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-cee
Confidence            99999998889999999999999999954211100       0001111112223578899999998 88887543 579


Q ss_pred             EEEECCC-CCeeEEEEecCCC------------C---cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          430 KLWDLSN-NQPSCIASRNPKA------------G---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       430 ~vwd~~~-~~~~~~~~~~~~~------------~---~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      ++||+.. .+|  +.+...|.            .   .-+.++|+.++.+ ++||+....++++++..|...
T Consensus       296 k~wD~nme~~p--v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  296 KLWDLNMEAKP--VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             EEEeccccCCc--ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce-EecccccceEEEecCCCCcce
Confidence            9999954 343  33333331            1   2357899999985 999999999999997666543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=5.1e-13  Score=125.17  Aligned_cols=257  Identities=19%  Similarity=0.237  Sum_probs=185.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s  284 (502)
                      ...|..|++|+.|..|.+||.......                          .....+|...|..-.|-|.. ..-+++
T Consensus       151 N~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~~NvfQaKFiP~s~d~ti~~  204 (559)
T KOG1334|consen  151 NQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHCNNVFQAKFIPFSGDRTIVT  204 (559)
T ss_pred             cccCceeeccCccceEEeehhhccCcc--------------------------cccccccccchhhhhccCCCCCcCcee
Confidence            678999999999999999999753322                          22334788888888888762 347899


Q ss_pred             EecCCcEEEEeCCC-Cee--eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE---eecC---Ce
Q 010748          285 ASADKQVKIWDVAA-GKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAA---DV  355 (502)
Q Consensus       285 gs~dg~v~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~---~v  355 (502)
                      ++.||.|++=.+.. +.+  ...+..|.++|.-++.-|..+..|++++.|+.+.-+|++.........   ....   ..
T Consensus       205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL  284 (559)
T ss_pred             ccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence            99999999887653 332  344567999999999999999999999999999999999876543222   2222   46


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe------ccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ..++.+|.+.+.|++|+.+-.+++||.|........   ..+..+.      ...-.|++++|+..+..+| ++-.|-.|
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~I  360 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN---GVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDEDI  360 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhcccc---chhhhcCCccccccCcccceeEEecCCcccee-eeecccce
Confidence            788999998889999999999999999986443222   1122222      2345699999998774444 55567779


Q ss_pred             EEEECCCCCe----------eEE-EEecCCCC--cEEEEEE-cCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748          430 KLWDLSNNQP----------SCI-ASRNPKAG--AVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       430 ~vwd~~~~~~----------~~~-~~~~~~~~--~v~~~~~-spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      ++|.-..+..          ..+ ..+.+|..  .|-.+-| -|...| +++|+.=|.|.||+-.+++.++-.-+.+.
T Consensus       361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGSDCGhIFiW~K~t~eii~~MegDr~  437 (559)
T KOG1334|consen  361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGSDCGHIFIWDKKTGEIIRFMEGDRH  437 (559)
T ss_pred             EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-EEecCccceEEEEecchhHHHHHhhcccc
Confidence            9995433211          111 22455643  4667766 567775 88888889999999999988876655443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.6e-12  Score=122.74  Aligned_cols=241  Identities=14%  Similarity=0.188  Sum_probs=161.5

Q ss_pred             CCCCCEE-EEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc--cceeeEEeccCCCcEE
Q 010748          206 REKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNKEFRNIL  282 (502)
Q Consensus       206 s~~~~~l-a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~l  282 (502)
                      +|||+|+ |+|...+.|+|||+.....                             .+..|.  ..|.-.-++.+. ..+
T Consensus        60 s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlDae~V~feiLsDD~-SK~  109 (703)
T KOG2321|consen   60 SPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLDAEVVDFEILSDDY-SKS  109 (703)
T ss_pred             cCCCcEEEEecccCCceEEEEccccee-----------------------------eeeecccccceeEEEeccch-hhh
Confidence            8999975 7888999999999974321                             122232  344444445443 234


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      +.-..|.+|-+.. .-|..- .++ -...-..|+++.-. .-|++++....|+-+++..+.....+....+.++++..++
T Consensus       110 v~L~~DR~IefHa-k~G~hy-~~R-IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~  185 (703)
T KOG2321|consen  110 VFLQNDRTIEFHA-KYGRHY-RTR-IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE  185 (703)
T ss_pred             eEeecCceeeehh-hcCeee-eee-cCcCCccccccCCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence            4445566666543 222211 111 12234456666555 3455566667788889998887776666678899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC-----CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-----AVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      -.. ++++|+.+|.|.+||.|........   .....+..|.+     .|+++.|+.+| -.+++|+..|.|.|||+++.
T Consensus       186 ~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l---~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~  260 (703)
T KOG2321|consen  186 EHG-LLACGTEDGVVEFWDPRDKSRVGTL---DAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRAS  260 (703)
T ss_pred             ccc-eEEecccCceEEEecchhhhhheee---ecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccC
Confidence            654 8999999999999999986321111   11112233443     49999999887 89999999999999999999


Q ss_pred             CeeEEEEecCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCccccc
Q 010748          438 QPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~-~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +|..+.. .+..-+|..+.|.+.+. -.|++ .....++|||-.+|+....
T Consensus       261 ~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~as  309 (703)
T KOG2321|consen  261 KPLLVKD-HGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMAS  309 (703)
T ss_pred             Cceeecc-cCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceee
Confidence            9755544 34557899999977632 23554 4556899999999887654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.47  E-value=1.9e-12  Score=114.15  Aligned_cols=201  Identities=18%  Similarity=0.162  Sum_probs=146.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++.+.-++++-.+|.+.+-+...+.                         .......+.|.-.++...|+....+++++|
T Consensus       130 ~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------le~vq~wk~He~E~Wta~f~~~~pnlvytG  184 (339)
T KOG0280|consen  130 STSGTKIFVSDSRGSISGVYETEMV-------------------------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTG  184 (339)
T ss_pred             eccCceEEEEcCCCcEEEEecceee-------------------------eeecccccccceeeeeeecccCCCceEEec
Confidence            6778889999999999855443211                         111224568999999999998888999999


Q ss_pred             ecCCcEEEEeCC-CCeeeEe-eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748          286 SADKQVKIWDVA-AGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       286 s~dg~v~vwd~~-~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  363 (502)
                      +.|+.+..||++ .++.+.+ .+-|...|.++.-+|..+.++++|++|-.|++||.|+-..+.......+.|..+.++|.
T Consensus       185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE  264 (339)
T ss_pred             CCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence            999999999998 3344443 46789999999999988899999999999999999976666656677899999999997


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-CCcEE-EEECCC
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVK-LWDLSN  436 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~-vwd~~~  436 (502)
                      ....+++++.-.-.++.++.......    .........|.+-+..-.|.... .+|+||+. |+.++ +|-.-+
T Consensus       265 ~~~~lL~~CMh~G~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  265 IFHRLLAACMHNGAKILDSSDKVLEF----QIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             hhhHHHHHHHhcCceEEEecccccch----heeeeccccccceeecccccccc-ceeeeeeccccceeeeeeecc
Confidence            55455555555556777776653210    12344455677777777775543 67888764 66544 664433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.7e-11  Score=121.79  Aligned_cols=209  Identities=12%  Similarity=0.089  Sum_probs=133.5

Q ss_pred             CCCCCCEEEEecC---CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748          205 DREKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       205 ~s~~~~~la~g~~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      |+|+|+.|+..+.   ++.|.+|++.++...                            .+..+...+.+.+|+|++..+
T Consensus       209 wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        209 FSPNRQEITYMSYANGRPRVYLLDLETGQRE----------------------------LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             ECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------------EeecCCCcccCcEECCCCCEE
Confidence            3899999988764   468999999754221                            112345567788999997766


Q ss_pred             EEEEecCCc--EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-CCC--cEEEEecCCCCCccceEeecCCee
Q 010748          282 LASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDR--SVVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       282 l~sgs~dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~v~  356 (502)
                      +++.+.++.  |.+||+.++.. ..+..+........|+|++ +.|+..+ .+|  .|.++|+....... .......+.
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~  337 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS  337 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence            667777665  77779887765 4455566667789999999 5555444 444  57777876654433 222345567


Q ss_pred             EEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-C-----Cc
Q 010748          357 SLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-D-----KM  428 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-d-----g~  428 (502)
                      ...|+|++..++++....+  .|.+|++...          ....+. ....+..+.|+|++ ++|+..+. .     ..
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~----------~~~~lt-~~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~  405 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS----------GERILT-SGFLVEGPTWAPNG-RVIMFFRQTPGSGGAPK  405 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEECCCC----------ceEecc-CCCCCCCCeECCCC-CEEEEEEccCCCCCcce
Confidence            7899999875555543333  5778887543          112222 22346788999998 55554433 2     25


Q ss_pred             EEEEECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      +.++++..+...   .+. ..+.+...+|+|-
T Consensus       406 L~~~dl~g~~~~---~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        406 LYTVDLTGRNER---EVP-TPGDASDPAWSPL  433 (435)
T ss_pred             EEEEECCCCceE---Ecc-CCCCccCcccCCC
Confidence            788888766532   222 2344666778763

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.46  E-value=9e-12  Score=119.95  Aligned_cols=189  Identities=13%  Similarity=0.189  Sum_probs=156.4

Q ss_pred             CCcEEEEEecCCcEEEEeCCCCeeeEeec---cCCCCeEEEEEc------C-------------CCCcEEEEEeCCCcEE
Q 010748          278 FRNILASASADKQVKIWDVAAGKCNLTLE---HHTDKVQAVAWN------H-------------HSPQILLSGSFDRSVV  335 (502)
Q Consensus       278 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~---~h~~~v~~l~~~------~-------------~~~~~l~s~s~dg~i~  335 (502)
                      ...++|....||.+++|+...++....|.   .-++..++..|.      |             .+...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            35689999999999999999988777663   234556666663      1             1335788899999999


Q ss_pred             EEecCCCCCccceE--eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEc
Q 010748          336 MKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  413 (502)
Q Consensus       336 iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  413 (502)
                      +|++..++......  .|.+.|.++.|+.+.. .|++++.|+.+..|+....         .........+..+.+++++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~~~~sl~is  153 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEK---------VIIRIWKEQKPLVSSLCIS  153 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccc---------eeeeeeccCCCccceEEEc
Confidence            99999888765443  5788999999988654 8999999999999999986         6667777788889999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCC-----CCcEEEEEeCCCcEEEEECCC
Q 010748          414 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----SPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       414 p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd-----~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      |++ ..+++++  ++|++||+.+.+  .+..+.+|.++|++++|.-.     |.|+|.+......+.+|-+..
T Consensus       154 ~D~-~~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  154 PDG-KILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCC-CEEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            997 8888877  479999999998  78899999999999999877     788888888888899998765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=3e-11  Score=120.90  Aligned_cols=212  Identities=13%  Similarity=0.069  Sum_probs=127.3

Q ss_pred             CCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748          204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      .|+|+|+.|+..+..   ..|.+||+.++....                            +......+.+.+|+|++..
T Consensus       202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----------------------------l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----------------------------VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----------------------------eecCCCCccceEECCCCCE
Confidence            338999999887643   469999997543210                            1112234568899999765


Q ss_pred             EEEEEecCCcEEEEe--CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC--CCCCccceEeecCCee
Q 010748          281 ILASASADKQVKIWD--VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTHSGFKWAVAADVE  356 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~  356 (502)
                      ++++.+.+|...||.  +..+. ...+..+........|+|+|..+++++...|...+|.+.  ++.... .........
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~  331 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT  331 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence            556778888766665  44443 455655666667789999994444454445677777654  332222 111223345


Q ss_pred             EEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-CCc--EEE
Q 010748          357 SLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKM--VKL  431 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~--i~v  431 (502)
                      ..+|+|++..+++++...+  .|.+||+.++.          ...+.. ........|+|++ +.|+.++. .|.  +.+
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~----------~~~lt~-~~~~~~p~~spdg-~~l~~~~~~~g~~~l~~  399 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQ----------VTALTD-TTRDESPSFAPNG-RYILYATQQGGRSVLAA  399 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCC----------eEEccC-CCCccCceECCCC-CEEEEEEecCCCEEEEE
Confidence            6789999875444443333  69999998752          122222 2334678999998 55555544 433  555


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      .++.. .  ....+..+.+.+...+|+|-
T Consensus       400 ~~~~g-~--~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        400 VSSDG-R--IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EECCC-C--ceEEeecCCCCCCCCccCCC
Confidence            56643 3  23333345566777788874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.44  E-value=4.7e-10  Score=100.29  Aligned_cols=234  Identities=14%  Similarity=0.189  Sum_probs=155.2

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE-EecCC--
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VGSME--  218 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-~g~~d--  218 (502)
                      ..+++|..|..-.++|...|    .+||..+.-...  .-..+++   .+  +.+.=+-      -..++|| +||..  
T Consensus         8 ~lsvs~NQD~ScFava~~~G----friyn~~P~ke~--~~r~~~~---~G--~~~veML------fR~N~laLVGGg~~p   70 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG----FRIYNCDPFKES--ASRQFID---GG--FKIVEML------FRSNYLALVGGGSRP   70 (346)
T ss_pred             eeEEEEccCCceEEEEecCc----eEEEecCchhhh--hhhcccc---Cc--hhhhhHh------hhhceEEEecCCCCC
Confidence            44589999999999998775    688877653220  0001111   11  1111010      1245554 44443  


Q ss_pred             ----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          219 ----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       219 ----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                          ..+.|||=....++                            ..-....+|.++.+.++   .|++.- .+.|.||
T Consensus        71 ky~pNkviIWDD~k~~~i----------------------------~el~f~~~I~~V~l~r~---riVvvl-~~~I~Vy  118 (346)
T KOG2111|consen   71 KYPPNKVIIWDDLKERCI----------------------------IELSFNSEIKAVKLRRD---RIVVVL-ENKIYVY  118 (346)
T ss_pred             CCCCceEEEEecccCcEE----------------------------EEEEeccceeeEEEcCC---eEEEEe-cCeEEEE
Confidence                47999993211111                            11135678999999987   455544 4789999


Q ss_pred             eCC-CCeeeEeeccC--CCCeEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCC--ccceEeecCCeeEEEeCCCCCCEE
Q 010748          295 DVA-AGKCNLTLEHH--TDKVQAVAWNHHSPQILLS-GSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       295 d~~-~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~~  368 (502)
                      ... +.+.++.+..-  ...+.+++-+... .+|+. |-.-|.|+|-|+.....  +.....|.+.|.|++.+.+|. ++
T Consensus       119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~v  196 (346)
T KOG2111|consen  119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LV  196 (346)
T ss_pred             EcCCChhheeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EE
Confidence            988 55666666422  2334444333333 33433 44569999999987665  355678999999999999876 89


Q ss_pred             EEEeCCCc-EEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          369 VVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       369 ~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      ++++..|+ |+|||..++         ..+..+..  ....|.+++|||+. .+|+++|..|+|.||.++.
T Consensus       197 ATaStkGTLIRIFdt~~g---------~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  197 ATASTKGTLIRIFDTEDG---------TLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEeccCcEEEEEEEcCCC---------cEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeec
Confidence            99999997 899999997         55555543  34579999999998 9999999999999998876

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=5.2e-11  Score=113.98  Aligned_cols=287  Identities=17%  Similarity=0.275  Sum_probs=180.0

Q ss_pred             ccccccccCCCceEEEEE-----ecCCcc--eeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010748          141 DLEDMTINPNDAVIVCAR-----NEDDVS--HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~-----~~~~~~--~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la  213 (502)
                      .+.++.|+|-+++|.+=.     .++..+  .+.+|...+  ..  ..+.....      ..-.|   .+.|+.+..+.|
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~--~~s~~q~k------~Q~~W---~~qfs~dEsl~a  141 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GV--QRSQIQKK------MQNGW---VPQFSIDESLAA  141 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeecc--ce--ehhheehh------hhcCc---ccccccchhhhh
Confidence            678999999999997731     111111  344555444  20  11111111      12234   244577766554


Q ss_pred             EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEE-----Eec
Q 010748          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILAS-----ASA  287 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s-----gs~  287 (502)
                      -- ..+.+.+|++......                          ...  -|...|+.+.++|.. ...+|+     ++.
T Consensus       142 rl-v~nev~f~~~~~f~~~--------------------------~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGa  192 (566)
T KOG2315|consen  142 RL-VSNEVQFYDLGSFKTI--------------------------QHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGA  192 (566)
T ss_pred             hh-hcceEEEEecCCccce--------------------------eee--eeccceeeEEecCCCCCceEEEEccCCCCC
Confidence            33 3478999998752211                          111  356789999999873 334443     466


Q ss_pred             CCcEEEEeCCCCee-----eEeeccCCCCeEEEEEcCCCCcEEEEEeCC-----------CcEEEEecCCCCCccceEee
Q 010748          288 DKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----------RSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       288 dg~v~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~  351 (502)
                      -..|+||.......     .++|. -.+.| .+.|++.+..+|+.++.|           .++++.++.... .......
T Consensus       193 Pa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~V~L~k  269 (566)
T KOG2315|consen  193 PASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VSVPLLK  269 (566)
T ss_pred             CcEEEEeccccccccchhhhcccc-cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EEEecCC
Confidence            67899998763222     12222 12333 588999886666655432           367888877333 3334455


Q ss_pred             cCCeeEEEeCCCCCCE-EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010748          352 AADVESLAWDPHAEHS-FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~-~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                      .++|.++.|+|.+..+ ++.|..-..+.|||++.          .+++.+  ..++-+++-|+|.| ++|+.+|.   -|
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----------~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G  336 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----------KPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPG  336 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCC----------CEeEeC--CCCCccceEECCCC-CEEEEeecCCCCC
Confidence            7899999999987644 33466788999999984          455544  46777899999998 78877776   47


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC-----CCcEEEEECCCCccccccc
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS-----KGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~-----dg~i~vwd~~~~~~~~~~~  489 (502)
                      .|-|||+.+.+  ++..+...  .-+-+.|+|||.|+|.+...     |+.++||+......-.+.|
T Consensus       337 ~mEvwDv~n~K--~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f  399 (566)
T KOG2315|consen  337 DMEVWDVPNRK--LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF  399 (566)
T ss_pred             ceEEEeccchh--hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhh
Confidence            89999999866  55555433  34557999999985544443     6789999986544333333

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.42  E-value=2.3e-11  Score=109.52  Aligned_cols=250  Identities=15%  Similarity=0.239  Sum_probs=172.0

Q ss_pred             CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      -+.|.+.+++...-|-..-+..++.+.   +++||.-......-+.  .+|.  .|..+.++.+       .+....|++
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~dr---tvrv~lkrds~q~wps--I~~~--mP~~~~~~~y-------~~e~~~L~v   85 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDR---TVRVWLKRDSGQYWPS--IYHY--MPSPCSAMEY-------VSESRRLYV   85 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccc---eeeeEEeccccccCch--hhhh--CCCCceEeee-------eccceEEEE
Confidence            355777889999999999999998776   6788866555432232  3343  3455556655       577889999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      |-..|++.-+.+...-                       .+.........|...|..+-|+-. ...+++.+.|..+.--
T Consensus        86 g~~ngtvtefs~sedf-----------------------nkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~h  141 (404)
T KOG1409|consen   86 GQDNGTVTEFALSEDF-----------------------NKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWH  141 (404)
T ss_pred             EEecceEEEEEhhhhh-----------------------hhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEE
Confidence            9999999888774210                       112223344579999999999887 5688999998776544


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC--CCccceEeecCCeeEEEeCCCCCCEEEEEe
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~  372 (502)
                      -.+.+..+..+.. ....+++.+.-   .+...|...|.|.+-.+...  .......+|.+.+.+++|.+. +.++++|.
T Consensus       142 c~e~~~~lg~Y~~-~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~  216 (404)
T KOG1409|consen  142 CTESGNRLGGYNF-ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGA  216 (404)
T ss_pred             eeccCCcccceEe-eccCCCCceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEecc
Confidence            4444443332211 11111121111   13445555666655544333  334445578899999999995 55899999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       373 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      .|..+.+||+-..        ......+.+|...|..+...+.. +.+.+++.||.|.+|+++.
T Consensus       217 ~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  217 SDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence            9999999999876        35667888999999999888876 8899999999999999865

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.42  E-value=1.8e-11  Score=108.08  Aligned_cols=152  Identities=18%  Similarity=0.331  Sum_probs=101.6

Q ss_pred             eeEEeccCCCcEEEEEec---------CCcEEEEeCCC-CeeeEeecc-CCCCeEEEEEcCCCCcEEEE-EeCCCcEEEE
Q 010748          270 LGLAWNKEFRNILASASA---------DKQVKIWDVAA-GKCNLTLEH-HTDKVQAVAWNHHSPQILLS-GSFDRSVVMK  337 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~---------dg~v~vwd~~~-~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s-~s~dg~i~iw  337 (502)
                      ..+.|++.|..+++....         -+...||-++. +..+..+.. ..++|.+++|+|++..++++ |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            467899997666665552         13355555532 233444432 34579999999999444333 4467899999


Q ss_pred             ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748          338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      |++.. ..  ..-....+..+.|+|+|. ++++++   ..|.|.+||+++.         ..+.... | ..++.++|+|
T Consensus        89 d~~~~-~i--~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~---------~~i~~~~-~-~~~t~~~WsP  153 (194)
T PF08662_consen   89 DVKGK-KI--FSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK---------KKISTFE-H-SDATDVEWSP  153 (194)
T ss_pred             cCccc-Ee--EeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC---------EEeeccc-c-CcEEEEEEcC
Confidence            99722 22  222356788999999987 455543   3577999999965         4444433 3 3478999999


Q ss_pred             CCCCEEEEEeC------CCcEEEEECCCC
Q 010748          415 LVPNLLATGST------DKMVKLWDLSNN  437 (502)
Q Consensus       415 ~~~~~l~t~s~------dg~i~vwd~~~~  437 (502)
                      +| ++|++++.      |+.++||++...
T Consensus       154 dG-r~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  154 DG-RYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CC-CEEEEEEeccceeccccEEEEEecCe
Confidence            99 77777764      788999998643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.8e-10  Score=115.73  Aligned_cols=206  Identities=13%  Similarity=0.102  Sum_probs=125.1

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEec
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDA  339 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--i~iwd~  339 (502)
                      .+...+.+..|+|++..++++...++  .|.+||+.+++... +....+......|+|++..++++.+.+|.  |.++|+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            35668889999999654444433333  58889998876432 22223344578999999555566777775  777788


Q ss_pred             CCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      .++.... ...+.......+|+|++..+++++..+|.  |+++|+.++         . ...+..+.......+|+|++ 
T Consensus       294 ~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---------~-~~~Lt~~g~~~~~~~~SpDG-  361 (448)
T PRK04792        294 ATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---------K-VSRLTFEGEQNLGGSITPDG-  361 (448)
T ss_pred             CCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEEecCCCCCcCeeECCCC-
Confidence            7665433 22334456778999998866666655554  556666654         1 22222222334567899998 


Q ss_pred             CEEEEEeC-CC--cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCccccc
Q 010748          418 NLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAGISN  487 (502)
Q Consensus       418 ~~l~t~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~--i~vwd~~~~~~~~~  487 (502)
                      .+|+..+. .+  .|.++|+.+++...+..   . .......|+|+|++++.+...+|.  ++++++ ++...+.
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~  431 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAMQVLTS---T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR  431 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCeEEccC---C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence            55555443 44  35667887776433221   1 122345799999976666665554  667776 3444333

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=2.2e-10  Score=115.01  Aligned_cols=199  Identities=18%  Similarity=0.179  Sum_probs=129.3

Q ss_pred             CcccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEe
Q 010748          264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd  338 (502)
                      .+...+.+.+|+|++. +|+.++..   ..|++||+.+++... +..+...+.+++|+|++..++++.+.++  .|.+|+
T Consensus       187 ~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       187 RSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             cCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            3556788999999955 56655443   479999999886543 3335566778999999955555665555  588888


Q ss_pred             cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... ...+........|+|++..+++++...+  .|+++++.+.          ....+..+...+..+.|+|++
T Consensus       265 ~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~----------~~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       265 LDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG----------EVRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC----------CEEEeecCCCCccCeEECCCC
Confidence            88765332 2233334556789998875555555444  4777777654          233444455667888999998


Q ss_pred             CCEEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC--cEEEEECC
Q 010748          417 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTL  480 (502)
Q Consensus       417 ~~~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg--~i~vwd~~  480 (502)
                       .+|+.++.++   .|.+||+.++....+.   .. .......|+|++++++++...++  .+++.+..
T Consensus       334 -~~i~~~~~~~~~~~i~~~d~~~~~~~~l~---~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       334 -DLIAFVHREGGGFNIAVMDLDGGGERVLT---DT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             -CEEEEEEccCCceEEEEEeCCCCCeEEcc---CC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence             7777777665   7889999886532222   11 22345689999997555554443  35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.39  E-value=4.4e-10  Score=106.47  Aligned_cols=306  Identities=13%  Similarity=0.137  Sum_probs=193.6

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ....+..+++||.|.+|++....+    +++|-......   .+...|.        .+..    +.|||.++||.+-+.
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~----V~~~~g~~~~~---l~~~~~~--------~V~~----~~fSP~~kYL~tw~~   91 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG----VECWGGPSKAK---LVRFRHP--------DVKY----LDFSPNEKYLVTWSR   91 (561)
T ss_pred             cCcchhheeecCcchheehhhccc----eEEccccchhh---eeeeecC--------Ccee----cccCcccceeeeecc
Confidence            456789999999999999998775    67776654432   2222221        1122    344899999999776


Q ss_pred             CCc---------------EEEeeCCCCCCcCcceecCCcchhhhhhccccC--------------------C--cccccc
Q 010748          218 EPA---------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKG--------------------K--KSSIKY  260 (502)
Q Consensus       218 dg~---------------I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------~--~~~~~~  260 (502)
                      .+.               +.|||..++..+..+......-..  ....+-+                    .  ......
T Consensus        92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~--Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~  169 (561)
T COG5354          92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG--WPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFK  169 (561)
T ss_pred             CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccc--cceeeeeecchhhhhhccCeEEEEecCCccccCchh
Confidence            554               899999988766544333221000  0000000                    0  000000


Q ss_pred             cccCcccceeeEEeccCCCc-EEEE-----EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-----
Q 010748          261 KKGSHTDSVLGLAWNKEFRN-ILAS-----ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----  329 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~-~l~s-----gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-----  329 (502)
                      .+  ....|+..+|+|.+.+ .||.     ....+++++|.+..++.+.+-.-....-..+.|++.|..+|+-.-     
T Consensus       170 ~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks  247 (561)
T COG5354         170 NL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS  247 (561)
T ss_pred             hc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence            11  1256788888887322 3332     366788999999877766554433444457899999843332211     


Q ss_pred             -----CCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEEecc
Q 010748          330 -----FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH  403 (502)
Q Consensus       330 -----~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h  403 (502)
                           ....+.|++++........ ...++|..++|.|.+..+.++. .....+.++|++..            ..+...
T Consensus       248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------------l~~~~P  314 (561)
T COG5354         248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------------LRFYFP  314 (561)
T ss_pred             ccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc------------eEEecC
Confidence                 1246888888865555433 6689999999999887655544 68889999999853            233344


Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe-----CCCcEE
Q 010748          404 DKAVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-----SKGKLE  475 (502)
Q Consensus       404 ~~~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~-----~dg~i~  475 (502)
                      ...-..+.|+|.+ ++++.++.+   |.+-+||..... .++..+.+.  ...-+.|+|+++|+...-.     .|..|+
T Consensus       315 e~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf-~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~  390 (561)
T COG5354         315 EQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRF-KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIK  390 (561)
T ss_pred             CcccccccccCcc-cEEEEecCCccccceEEeccCCce-EEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceE
Confidence            5556778899998 888887765   679999987654 344344433  3455789999997444322     356899


Q ss_pred             EEECCCCc
Q 010748          476 IWDTLSDA  483 (502)
Q Consensus       476 vwd~~~~~  483 (502)
                      ||++....
T Consensus       391 l~~v~g~~  398 (561)
T COG5354         391 LWDVYGAK  398 (561)
T ss_pred             EEEecCch
Confidence            99996544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=3e-10  Score=114.39  Aligned_cols=200  Identities=13%  Similarity=0.124  Sum_probs=125.9

Q ss_pred             CcccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEe
Q 010748          264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd  338 (502)
                      .+...+...+|+|++. .|+..+..   ..|.+|++.+++... +....+.+....|+|+|..++++.+.+|  .|.+||
T Consensus       196 ~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        196 QSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             cCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            4567789999999965 55554433   368999998886533 3333445567899999954555666665  578889


Q ss_pred             cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... ............|+|++..+++++..+|  .|+++++.++.          ...+...........|+|++
T Consensus       274 ~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~----------~~~lt~~~~~~~~~~~Spdg  342 (430)
T PRK00178        274 LASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR----------AERVTFVGNYNARPRLSADG  342 (430)
T ss_pred             CCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC----------EEEeecCCCCccceEECCCC
Confidence            88765433 2333445667889999886666665555  46667776541          12222122334567899998


Q ss_pred             CCEEEEEeC-CC--cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC--cEEEEECCC
Q 010748          417 PNLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTLS  481 (502)
Q Consensus       417 ~~~l~t~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg--~i~vwd~~~  481 (502)
                       ..|+..+. ++  .|.+||+.++....+.. .   .......|+|+|++++.+....|  .|.++++..
T Consensus       343 -~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        343 -KTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             -CEEEEEEccCCceEEEEEECCCCCEEEccC-C---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             56655544 33  48889998877433322 1   12235689999997666655444  466667643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.37  E-value=1.6e-09  Score=105.30  Aligned_cols=286  Identities=13%  Similarity=0.178  Sum_probs=168.3

Q ss_pred             ccccccccCCCceEEEEEecC-CcceeEEEEEecCCCCCCCeeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEEecC-
Q 010748          141 DLEDMTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVGSM-  217 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~-~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~la~g~~-  217 (502)
                      .-.-++++|++++|.++.... ....+..|.++...+   .|....... ....|..++.       +|++++|+++.. 
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L~~~~~~~~~g~~p~~i~~-------~~~g~~l~vany~  107 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TLTLLNSVPSGGSSPCHIAV-------DPDGRFLYVANYG  107 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EEEEEEEEEESSSCEEEEEE-------CTTSSEEEEEETT
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---eeEEeeeeccCCCCcEEEEE-------ecCCCEEEEEEcc
Confidence            446788999999999987653 445777777776643   444333333 2333333332       789999998874 


Q ss_pred             CCcEEEeeCCCCCCcCcce-ecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          218 EPAIEIWDLDVIDEVQPHV-ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      +|.|.+++++....+.... +..-           ........   ..-.....++.|+|+++.++++.-....|.+|++
T Consensus       108 ~g~v~v~~l~~~g~l~~~~~~~~~-----------~g~g~~~~---rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~  173 (345)
T PF10282_consen  108 GGSVSVFPLDDDGSLGEVVQTVRH-----------EGSGPNPD---RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI  173 (345)
T ss_dssp             TTEEEEEEECTTSEEEEEEEEEES-----------EEEESSTT---TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEEccCCcccceeeeeccc-----------CCCCCccc---ccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence            7999999997532222110 0000           00000000   1122446788999996655555545568999999


Q ss_pred             CCCe--e--eEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceE--e-e------cCCeeEEEeC
Q 010748          297 AAGK--C--NLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKW--A-V------AADVESLAWD  361 (502)
Q Consensus       297 ~~~~--~--~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~--~-~------~~~v~~v~~~  361 (502)
                      ....  .  ...+. ........+.|+|++....++.-.+++|.++++....... ...  . .      ......++++
T Consensus       174 ~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is  253 (345)
T PF10282_consen  174 DDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS  253 (345)
T ss_dssp             -TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred             eCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence            7654  2  12222 2446688999999995555666778999999988322111 111  0 1      1257789999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEEC--CCCC
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNNQ  438 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~--~~~~  438 (502)
                      |++..++++....+.|.+|++......     ...+..+.........++++|++ ++|+++. .++.|.+|++  .++.
T Consensus       254 pdg~~lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  254 PDGRFLYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             TTSSEEEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTE
T ss_pred             cCCCEEEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCc
Confidence            998866666667889999999432100     13344444444557999999998 6665555 5778999876  4555


Q ss_pred             eeEEEEecCCCCcEEEEEE
Q 010748          439 PSCIASRNPKAGAVFSVAF  457 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~~~~  457 (502)
                      +...... .......|+.|
T Consensus       328 l~~~~~~-~~~~~p~ci~f  345 (345)
T PF10282_consen  328 LTPVGSS-VPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEEE-EESSSEEEEEE
T ss_pred             EEEeccc-ccCCCCEEEeC
Confidence            4333322 22344666665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.36  E-value=2.2e-10  Score=110.57  Aligned_cols=194  Identities=19%  Similarity=0.249  Sum_probs=150.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec------c---
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN------K---  276 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~------~---  276 (502)
                      +|...|+|..+.||.++||+.......+.+....                        .-++..+++.|.      |   
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~------------------------~~s~t~~~~~w~L~~~~s~~k~   57 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA------------------------SLSGTCTYTKWGLSADYSPMKW   57 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccch------------------------hccCcceeEEEEEEeccchHHH
Confidence            4568899999999999999997654433221111                        011222222221      1   


Q ss_pred             ----------CCCcEEEEEecCCcEEEEeCCCCeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          277 ----------EFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       277 ----------~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                                .+..+++-|...|.|.+|++..++....+.  .|.+.|.++.|+.+- ..|.+++.|+.+..|+......
T Consensus        58 ~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~  136 (541)
T KOG4547|consen   58 LSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI  136 (541)
T ss_pred             HhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee
Confidence                      124578889999999999999999888874  689999999999887 7899999999999999999888


Q ss_pred             ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC-----CCCE
Q 010748          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL-----VPNL  419 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~~  419 (502)
                      ....+.....+.+++.+|++. .+++++  +.|++||+.+.         +.+..+.+|.++|++++|...     |..+
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~v  204 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYV  204 (541)
T ss_pred             eeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEecccccccee
Confidence            876667778899999999965 676664  78999999997         889999999999999999876     5455


Q ss_pred             EEEEeCCCcEEEEECCC
Q 010748          420 LATGSTDKMVKLWDLSN  436 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~  436 (502)
                      |.+...+..+.+|-+..
T Consensus       205 Lssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  205 LSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeccccccceeEEEEEc
Confidence            66666667788886654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=6.4e-10  Score=110.89  Aligned_cols=207  Identities=10%  Similarity=0.058  Sum_probs=126.1

Q ss_pred             cccceeeEEeccCCCc--EEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC----cEEE
Q 010748          265 HTDSVLGLAWNKEFRN--ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVM  336 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~--~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg----~i~i  336 (502)
                      ....+.+-+|+|+|..  ++++...+|  .|.+.++.+++... +....+......|+|+|..++++....|    .+.+
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            3445667799999765  333444444  57788888775433 2223445567899999955444443333    3444


Q ss_pred             EecCCCC--CccceEee-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEE--CCCCCCCCCCCCCccceEEeccCCCeeEEE
Q 010748          337 KDARIST--HSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFD--IRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  411 (502)
Q Consensus       337 wd~~~~~--~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  411 (502)
                      |++....  ........ .......+|+|+|..+++++..+|...+|.  +...        ......+..+...+....
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~--------g~~~~~lt~~~~~~~~p~  333 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE--------GQSPRLLTKKYRNSSCPA  333 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc--------ccceEEeccCCCCcccee
Confidence            6766431  11112222 233467899999886666666677655554  4321        122334444556678899


Q ss_pred             EcCCCCCEEEEEeC-C--CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCcc
Q 010748          412 YNPLVPNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAG  484 (502)
Q Consensus       412 ~sp~~~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d--g~i~vwd~~~~~~  484 (502)
                      |+|+| +.|+..+. +  ..|.+||+.+++...+.   .....+....|+|+|+++++++...  ..|.+|++.+++.
T Consensus       334 wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        334 WSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLT---TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             ECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEcc---CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            99998 65655443 3  36999999988743332   2234567899999999766555443  4688889877654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.35  E-value=3.6e-10  Score=109.81  Aligned_cols=196  Identities=16%  Similarity=0.194  Sum_probs=140.1

Q ss_pred             cEEE-EEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748          280 NILA-SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       280 ~~l~-sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      ++++ +-..++.|.|.|..+.+.+.++......-..+.++|++ +++++++.||.|.++|+.+.+... ..........+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~-~i~~G~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA-TIKVGGNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE-EEE-SSEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE-EEecCCCcceE
Confidence            4554 45568999999999999999997655544567899999 788888999999999999988655 45666778999


Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-------CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      +++++|..++++....+.+.++|.++.         +++..+...       ...+.++..+|..+.++++.-.-+.|.+
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tl---------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~v  154 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETL---------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWV  154 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT-----------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccc---------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEE
Confidence            999998866666678999999999987         666666543       3467888888887445666555688888


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .|....++....... .........|+|+++|++++......|-++|+.+++.+..
T Consensus       155 Vdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  155 VDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             EETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEeccccccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence            898877654443333 3456778999999999888777888999999999877654

...

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=5e-10  Score=114.65  Aligned_cols=199  Identities=14%  Similarity=0.185  Sum_probs=143.6

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCee--eeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY--VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d  218 (502)
                      .|....+.-....++.++..+     .+++++....   .+.  ..+..      .|+-...+-..++++.-++++|+.-
T Consensus        89 wi~g~~l~~e~k~i~l~~~~n-----s~~i~d~~~~---~~~~~i~~~e------r~~l~~~~~~g~s~~~~~i~~gsv~  154 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRN-----SLLIRDSKNS---SVLSKIQSDE------RCTLYSSLIIGDSAEELYIASGSVF  154 (967)
T ss_pred             cccccchhhhcceEEEEEcCc-----eEEEEecccC---ceehhcCCCc------eEEEEeEEEEeccCcEEEEEecccc
Confidence            444455556667777777776     5555555443   222  11111      1111111123347788899999999


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~  298 (502)
                      +.|.+|+... +                          .....+.+|.+.|.++.|+.+ +.+++++|.|.++++|.+.+
T Consensus       155 ~~iivW~~~~-d--------------------------n~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s  206 (967)
T KOG0974|consen  155 GEIIVWKPHE-D--------------------------NKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDS  206 (967)
T ss_pred             ccEEEEeccc-c--------------------------CCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeeccc
Confidence            9999999861 1                          111145689999999999999 55999999999999999999


Q ss_pred             CeeeE-eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748          299 GKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       299 ~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v  377 (502)
                      .+... +..+|+..|..++|+|.   .++|++.|.++++|+................+..++..+.. ...++++.||.+
T Consensus       207 ~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  207 REVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTL  282 (967)
T ss_pred             ccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcch
Confidence            88766 66789999999999996   79999999999999776555443333345668888888754 478889999999


Q ss_pred             EEEECCCC
Q 010748          378 KGFDIRTA  385 (502)
Q Consensus       378 ~i~d~~~~  385 (502)
                      ++|++...
T Consensus       283 k~~~l~~r  290 (967)
T KOG0974|consen  283 KLWDLNGR  290 (967)
T ss_pred             hhhhhhcc
Confidence            99887543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=7e-10  Score=111.43  Aligned_cols=190  Identities=17%  Similarity=0.160  Sum_probs=117.0

Q ss_pred             CCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748          204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      .|+|+|++||.++..   ..|++|++.++...                            .+..+...+.+++|+|++..
T Consensus       196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----------------------------~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----------------------------KVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----------------------------EeecCCCCccceEECCCCCE
Confidence            448999999987654   47999998753211                            11123455677899999665


Q ss_pred             EEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCccceEeecCCee
Q 010748          281 ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       281 ~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~  356 (502)
                      ++++.+.++  .|++|++.+++. ..+..+........|+|++..+++++...+  .|.++++.+..... .......+.
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~  325 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNA  325 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCcc
Confidence            656666554  588999987754 334445555567899999944444444444  57777777654322 222345567


Q ss_pred             EEEeCCCCCCEEEEEeCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC---cEE
Q 010748          357 SLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MVK  430 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg---~i~  430 (502)
                      ...|+|++. +++.++.++   .|.+||+.+..          ...+.. ........|+|++ ++|+..+.++   .++
T Consensus       326 ~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~----------~~~l~~-~~~~~~p~~spdg-~~l~~~~~~~~~~~l~  392 (417)
T TIGR02800       326 SPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG----------ERVLTD-TGLDESPSFAPNG-RMILYATTRGGRGVLG  392 (417)
T ss_pred             CeEECCCCC-EEEEEEccCCceEEEEEeCCCCC----------eEEccC-CCCCCCceECCCC-CEEEEEEeCCCcEEEE
Confidence            889999887 455555444   68888887641          122221 1234556899998 5555555443   355


Q ss_pred             EEECCC
Q 010748          431 LWDLSN  436 (502)
Q Consensus       431 vwd~~~  436 (502)
                      +.+...
T Consensus       393 ~~~~~g  398 (417)
T TIGR02800       393 LVSTDG  398 (417)
T ss_pred             EEECCC
Confidence            555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=3.1e-10  Score=116.16  Aligned_cols=191  Identities=13%  Similarity=0.176  Sum_probs=150.1

Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCe-----EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKV-----QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      ..+.-. ...++.++.++.+.+||...+..+..+.. ...+     .-+.+++.. -++++|+.-+.|.+|+........
T Consensus        93 ~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~  169 (967)
T KOG0974|consen   93 AKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI  169 (967)
T ss_pred             cchhhh-cceEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc
Confidence            333334 34788888889999999988777666653 3222     122334554 789999999999999998555555


Q ss_pred             ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC
Q 010748          347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ...+|.+.+.++.|+-++. ++++.++|.++++|++.+..        .......+|+..|..+.|.|+   .++|++.|
T Consensus       170 ~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~--------~~~~~~fgHsaRvw~~~~~~n---~i~t~ged  237 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSRE--------VLGCTGFGHSARVWACCFLPN---RIITVGED  237 (967)
T ss_pred             eecccCCceEEEEEccCCc-EEEEEecCcceeeeeccccc--------ccCcccccccceeEEEEeccc---eeEEeccc
Confidence            5789999999999999876 89999999999999999873        333567789999999999984   89999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      .+.++|+....+.   ..+..|. ..|+.++..+... +++|++.||.+++|++..
T Consensus       238 ctcrvW~~~~~~l---~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  238 CTCRVWGVNGTQL---EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eEEEEEeccccee---hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence            9999997766552   2455553 4689999988887 699999999999999865

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.6e-09  Score=108.93  Aligned_cols=214  Identities=14%  Similarity=0.088  Sum_probs=126.2

Q ss_pred             CCCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748          203 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       203 ~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      +.|+|+|+.|+..+..   ..|.+||+.++....                         ...+   .......+|+|++.
T Consensus       223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-------------------------lt~~---~g~~~~~~wSPDG~  274 (448)
T PRK04792        223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-------------------------VTSF---PGINGAPRFSPDGK  274 (448)
T ss_pred             ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------------------ecCC---CCCcCCeeECCCCC
Confidence            3448999999876543   358888886532110                         0011   12234679999976


Q ss_pred             cEEEEEecCCc--EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEecCCCCCccceEeecCCe
Q 010748          280 NILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDARISTHSGFKWAVAADV  355 (502)
Q Consensus       280 ~~l~sgs~dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v  355 (502)
                      .++++.+.+|.  |.+||+.+++. ..+..+........|+|++..+++++..++.  |.++|+.+++...... .....
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~  352 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQN  352 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCC
Confidence            56666777775  77788887764 3444455567788999999445555544554  5556666555332221 22233


Q ss_pred             eEEEeCCCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc--EEE
Q 010748          356 ESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKL  431 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~--i~v  431 (502)
                      ...+|+|++..+++++...+.  |.++|+.++.          ...+... .......|+|++..++++...++.  +.+
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----------~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~  421 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----------MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAA  421 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCC----------eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            457899998866666555554  5556766541          1222211 122345799999445555545544  667


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ++.....   ...+..+.+.+...+|+|-
T Consensus       422 ~~~~G~~---~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        422 VSIDGRF---KARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EECCCCc---eEECcCCCCCcCCCccCCC
Confidence            7775433   3334444566777888873

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=2.2e-08  Score=91.79  Aligned_cols=287  Identities=11%  Similarity=0.172  Sum_probs=180.5

Q ss_pred             ceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCC
Q 010748          164 SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGG  240 (502)
Q Consensus       164 ~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~  240 (502)
                      ..+.+|.++...+   .+..-.......-|.-++|       +|++++|.++..+   |.|.-|.++..+....  .+. 
T Consensus        16 ~gI~v~~ld~~~g---~l~~~~~v~~~~nptyl~~-------~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~ln-   82 (346)
T COG2706          16 QGIYVFNLDTKTG---ELSLLQLVAELGNPTYLAV-------NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FLN-   82 (346)
T ss_pred             CceEEEEEeCccc---ccchhhhccccCCCceEEE-------CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--Eee-
Confidence            3577888886665   4433333334455566666       7899888887654   7888888874211110  000 


Q ss_pred             cchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE-ecCCcEEEEeCCC-CeeeE--eeccCCCC-----
Q 010748          241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQVKIWDVAA-GKCNL--TLEHHTDK-----  311 (502)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg-s~dg~v~vwd~~~-~~~~~--~~~~h~~~-----  311 (502)
                                          ....-..+-+.++++++++ +|+++ -..|.|.++-++. |.+..  .+..|.++     
T Consensus        83 --------------------~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~r  141 (346)
T COG2706          83 --------------------RQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHER  141 (346)
T ss_pred             --------------------ccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcc
Confidence                                0001112238899999965 55555 4468899999865 43221  12235554     


Q ss_pred             -----eEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCccc---eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEEC
Q 010748          312 -----VQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       312 -----v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~---~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~  382 (502)
                           +.+..+.|++ ++|++... --.|.+|++..+.....   ........+.+.|+|+++...++.=-+++|.+|..
T Consensus       142 Q~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y  220 (346)
T COG2706         142 QESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY  220 (346)
T ss_pred             ccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence                 8889999999 67766653 35789999986554321   22456678999999998855556667899999998


Q ss_pred             CCCCCCCCCCCCccceEEe------ccCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECCC--CCeeEEEEecCCCCcEE
Q 010748          383 RTAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--NQPSCIASRNPKAGAVF  453 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~~--~~~~~~~~~~~~~~~v~  453 (502)
                      ......     ...++.+.      ........|.++|+| ++|+++-. ...|-+|.+..  ++...+.....+....+
T Consensus       221 ~~~~g~-----~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR  294 (346)
T COG2706         221 NPAVGK-----FEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR  294 (346)
T ss_pred             cCCCce-----EEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc
Confidence            874110     11122221      123567889999998 77766543 45688887754  44444445555555678


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       454 ~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      .+.|+|.+++|+|++-....|.+|.+.....-......
T Consensus       295 ~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         295 DFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR  332 (346)
T ss_pred             cceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence            99999999986666555568999987655443333333

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2e-09  Score=107.38  Aligned_cols=181  Identities=11%  Similarity=0.105  Sum_probs=106.5

Q ss_pred             ceeeEEeccCCCcEEEEEecCC----cEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEec-
Q 010748          268 SVLGLAWNKEFRNILASASADK----QVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-  339 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg----~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~-  339 (502)
                      .....+|+|+|..++++...+|    .+.+|++..+   +.......+.......+|+|+|..+++++..+|...+|.+ 
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            3456799999665555543333    3445777653   3333333333445678999999444545556676566644 


Q ss_pred             -CCC-CCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          340 -RIS-THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       340 -~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                       ... ............+....|+|++..+++++..+|  .|.+||+.++.          ...+......+....|+|+
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----------~~~Lt~~~~~~~~p~wSpD  381 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----------DYQLTTSPENKESPSWAID  381 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----------eEEccCCCCCccceEECCC
Confidence             321 112212223345678899999886555555443  68999998762          2233333345678999999


Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCC
Q 010748          416 VPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  461 (502)
Q Consensus       416 ~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~  461 (502)
                      +..+++++..  ...|.+|++..++...+..   ..+.+...+|+|-.
T Consensus       382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~---~~g~~~~p~Ws~~~  426 (428)
T PRK01029        382 SLHLVYSAGNSNESELYLISLITKKTRKIVI---GSGEKRFPSWGAFP  426 (428)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEEEeec---CCCcccCceecCCC
Confidence            8444444443  3468889998876433332   33556677888753

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.1e-09  Score=108.20  Aligned_cols=211  Identities=14%  Similarity=0.140  Sum_probs=126.4

Q ss_pred             CCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748          205 DREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       205 ~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      |+|+|+.|+..+..   ..|.+|++.++....                            +....+.+...+|+|++..+
T Consensus       206 wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------------l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------------ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------------ccCCCCCcCCeEECCCCCEE
Confidence            38999999876544   468889987542210                            01122334568999996655


Q ss_pred             EEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCccceEeecCCeeE
Q 010748          282 LASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVES  357 (502)
Q Consensus       282 l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~  357 (502)
                      +++.+.+|  .|.+||+.+++.. .+..+........|+|++..+++++..+|  .|.++++.++....... .......
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~  335 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR  335 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence            55666665  5888899887653 45555666777899999944555544444  46666776655332221 1223345


Q ss_pred             EEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCC--cEEEE
Q 010748          358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDK--MVKLW  432 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg--~i~vw  432 (502)
                      ..|+|++..++++...++  .|.+||+.++.          ...+. +........|+|+| ++++..+ ..+  .|.++
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~----------~~~lt-~~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~  403 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGS----------VRILT-DTSLDESPSVAPNG-TMLIYATRQQGRGVLMLV  403 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCC----------EEEcc-CCCCCCCceECCCC-CEEEEEEecCCceEEEEE
Confidence            789999876555554444  47888887652          11221 22223356899998 5555444 333  36677


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ++....   ...+..+.+.+...+|+|-
T Consensus       404 ~~~g~~---~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        404 SINGRV---RLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ECCCCc---eEECcCCCCCcCCCccCCC
Confidence            775443   2233334556677778763

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.28  E-value=1.5e-11  Score=131.28  Aligned_cols=201  Identities=14%  Similarity=0.178  Sum_probs=152.2

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      .|-..|.++.-+|.. .+.+||+.||.|++|....++.+..++ ..+..|+.+.|+.+| +.+..+..||.+.+|... +
T Consensus      2206 ~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             cccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-C
Confidence            455778888888884 478899999999999999888877773 334899999999999 788999999999999988 3


Q ss_pred             CCccceEeecCCeeEEEeCCCCCCEEEEE---eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          343 THSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      +....-..|......+.|-.  . .+++.   +.++.+.+||.....        .....-..|.+.++++++.|.. .+
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~--------~~s~v~~~H~~gaT~l~~~P~~-ql 2350 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPP--------MNSLVHTCHDGGATVLAYAPKH-QL 2350 (2439)
T ss_pred             cceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCc--------ccceeeeecCCCceEEEEcCcc-eE
Confidence            33322334555666666654  2 34443   467899999987652        2222338899999999999987 99


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      |++||.+|.|++||++..+.  ...+..         +. ... .+++|+..|.|+||++.....+.+....+
T Consensus      2351 lisggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             EEecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhh-eeeccCcccceEEEEccccchhhcCchhh
Confidence            99999999999999988763  222221         44 334 59999999999999999887766554444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.26  E-value=8.8e-09  Score=113.04  Aligned_cols=262  Identities=13%  Similarity=0.148  Sum_probs=159.5

Q ss_pred             CC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      ++ +++++++-+..+.|++||.... ..   ..+++....       -.....   ....+-.....|++.+++..++++
T Consensus       576 d~~~g~lyVaDs~n~rI~v~d~~G~-~i---~~ig~~g~~-------G~~dG~---~~~a~f~~P~GIavd~~gn~LYVa  641 (1057)
T PLN02919        576 DLLNNRLFISDSNHNRIVVTDLDGN-FI---VQIGSTGEE-------GLRDGS---FEDATFNRPQGLAYNAKKNLLYVA  641 (1057)
T ss_pred             ECCCCeEEEEECCCCeEEEEeCCCC-EE---EEEccCCCc-------CCCCCc---hhccccCCCcEEEEeCCCCEEEEE
Confidence            44 4667777778889999998632 11   111110000       000000   001223346789999884434444


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccC-----------------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHH-----------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      -...+.|+++|+.++.. .++.+-                 -.....++++|.+..++++.+.++.|++||...+.....
T Consensus       642 Dt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~  720 (1057)
T PLN02919        642 DTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF  720 (1057)
T ss_pred             eCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            45567899999877653 333110                 113467999996547888888899999999876543210


Q ss_pred             eE--------------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC----CCCCccceEEec-------
Q 010748          348 KW--------------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD----STSQQSSFTLHA-------  402 (502)
Q Consensus       348 ~~--------------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~----~~~~~~~~~~~~-------  402 (502)
                      ..              ..-.....++++|++..++++-+.++.|++||+.++.....    .........+..       
T Consensus       721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence            00              01124567999998876777778889999999986521000    000000011110       


Q ss_pred             -cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-----------cCCCCcEEEEEEcCCCCcEEEEEeC
Q 010748          403 -HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----------NPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       403 -h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~v~~~~~spd~~~ll~sg~~  470 (502)
                       .-....+++++++| .++++-+.++.|++||..++....+...           .........++++++|+ ++++-+.
T Consensus       801 ~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~  878 (1057)
T PLN02919        801 VLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTN  878 (1057)
T ss_pred             hhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECC
Confidence             11123588999988 7888888899999999987763322211           01122467899999998 7888888


Q ss_pred             CCcEEEEECCCCcc
Q 010748          471 KGKLEIWDTLSDAG  484 (502)
Q Consensus       471 dg~i~vwd~~~~~~  484 (502)
                      ++.|++||+.++..
T Consensus       879 Nn~Irvid~~~~~~  892 (1057)
T PLN02919        879 NSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCEEEEEECCCCcc
Confidence            99999999988765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=3.2e-09  Score=101.64  Aligned_cols=291  Identities=13%  Similarity=0.143  Sum_probs=185.3

Q ss_pred             ccccccccCCCceEEEEEecCC--------cceeEEEEEecCCCCCCCeeeeec--cccCCCcceeeeecCCCCCCCCCC
Q 010748          141 DLEDMTINPNDAVIVCARNEDD--------VSHLEVYILEESDGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~--------~~~l~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~  210 (502)
                      .|.-+.|||..++|++-+..-.        ...|.||...++..    +...+.  ...+..|+ +.       ||.+++
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l----krsF~~~~~~~~~WP~-fr-------WS~DdK  318 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL----KRSFPVIKSPYLKWPI-FR-------WSHDDK  318 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch----hcceeccCCCccccce-EE-------eccCCc
Confidence            4677888999999988664332        24677777665542    122221  11112221 23       489999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec---
Q 010748          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA---  287 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~---  287 (502)
                      |+|--+. ..|.||+..+...+..                     +      .-.-..|....|+|. +++||--+-   
T Consensus       319 y~Arm~~-~sisIyEtpsf~lld~---------------------K------slki~gIr~FswsP~-~~llAYwtpe~~  369 (698)
T KOG2314|consen  319 YFARMTG-NSISIYETPSFMLLDK---------------------K------SLKISGIRDFSWSPT-SNLLAYWTPETN  369 (698)
T ss_pred             eeEEecc-ceEEEEecCceeeecc---------------------c------ccCCccccCcccCCC-cceEEEEccccc
Confidence            9998766 5788998765322211                     0      012356888999998 667764332   


Q ss_pred             --CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEE----------eCCCcEEEEecCCCCCccceEeecCCe
Q 010748          288 --DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG----------SFDRSVVMKDARISTHSGFKWAVAADV  355 (502)
Q Consensus       288 --dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~----------s~dg~i~iwd~~~~~~~~~~~~~~~~v  355 (502)
                        -..+.|-.+.+++.+++-.-|+-.=..|.|-.+| .+|+.-          +.-..+-|+.++....+.........|
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v  448 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV  448 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence              2357777888887777766665555567787777 555432          222346778888888777777888999


Q ss_pred             eEEEeCCCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe---CCCcEE
Q 010748          356 ESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVK  430 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s---~dg~i~  430 (502)
                      ...+|.|.|..+.+..+.  ..++.+|-+.+....     ...+..+.  ....+.+.|+|.| ++++.+.   ..|.+.
T Consensus       449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-----~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~  520 (698)
T KOG2314|consen  449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-----PSLVKELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLE  520 (698)
T ss_pred             eeeeeccCCCeEEEEEccccccceeEEEeecCCCc-----hhhhhhhc--ccccceEEEcCCC-cEEEEEEecccccceE
Confidence            999999998866555543  346888988753210     12333333  3667899999998 7766653   478899


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCcc
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAG  484 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~------dg~i~vwd~~~~~~  484 (502)
                      ++|+...... ......| ...+.+.|.|.|+| ++|+++      |..-+||++...-.
T Consensus       521 F~D~~~a~~k-~~~~~eh-~~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqGrll  577 (698)
T KOG2314|consen  521 FYDTDYADLK-DTASPEH-FAATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQGRLL  577 (698)
T ss_pred             EEecchhhhh-hccCccc-cccccceECCCCCE-EEEeeehhhhccccceEEEEeecHHH
Confidence            9998753311 1222233 34677899999998 555554      34568888865443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.23  E-value=1.3e-10  Score=100.98  Aligned_cols=149  Identities=18%  Similarity=0.212  Sum_probs=105.4

Q ss_pred             CcEEEEEecCCcEEEEeCCCCee-eEeeccCCCCeEEEEEcCCCCcEEEEEeC-----CCcEEEEecCCCCCccceEeec
Q 010748          279 RNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      .+-++++..||.+.+++.+.-.. .+.+..-...-.+.++...+ +++.++..     -+..++|+++..+.........
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeeccccccccccccccc
Confidence            45799999999999999765211 11111111111223333344 34443321     2345667766544333222333


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      ..|.+++-+|...+++++|+.+|.+-+||.|+.        ..++..+.+|+.+++-+-|+|..+..|++++.||.+..|
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w  251 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW  251 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence            449999999998889999999999999999988        467778899999999999999999999999999999999


Q ss_pred             ECCC
Q 010748          433 DLSN  436 (502)
Q Consensus       433 d~~~  436 (502)
                      |..+
T Consensus       252 das~  255 (319)
T KOG4714|consen  252 DAST  255 (319)
T ss_pred             cCCC
Confidence            9875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.20  E-value=6e-08  Score=92.34  Aligned_cols=250  Identities=11%  Similarity=0.092  Sum_probs=145.3

Q ss_pred             CCCCCEEEEecC----------CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec
Q 010748          206 REKGNFMAVGSM----------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN  275 (502)
Q Consensus       206 s~~~~~la~g~~----------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  275 (502)
                      ||+++.|.++..          +..|.+||+.+......+.+-..                 +.  + .....-..++++
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~-----------------p~--~-~~~~~~~~~~ls  113 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG-----------------PR--F-LVGTYPWMTSLT  113 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-----------------ch--h-hccCccceEEEC
Confidence            899998888766          68999999987655433221100                 00  0 012234467899


Q ss_pred             cCCCcEEEEEe-c-CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc-eEee-
Q 010748          276 KEFRNILASAS-A-DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAV-  351 (502)
Q Consensus       276 ~~~~~~l~sgs-~-dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~-  351 (502)
                      |+|+ +|+... . +..|.+.|+.+++.+..+.- .+...-...+...   +.+-+.||.....-+........ .... 
T Consensus       114 ~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf  188 (352)
T TIGR02658       114 PDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGNPKIKPTEVF  188 (352)
T ss_pred             CCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCc---cEEEeecCceEEEEecCCCceEEeeeeee
Confidence            9965 555443 3 78999999999999988864 2222222222222   22334455554433332211110 0000 


Q ss_pred             -c--CCe-eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-------eccCCCeeEEEEcCCCCCEE
Q 010748          352 -A--ADV-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       352 -~--~~v-~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~~l  420 (502)
                       .  ..+ ..-.|.+.++..++++.+ |.|++.|+.......    ......+       ....+.+.-++++|++.+++
T Consensus       189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----cceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence             0  000 000344523346666666 999999975542111    1111111       12344555699999984444


Q ss_pred             EEEe---------CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCcccccc
Q 010748          421 ATGS---------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       421 ~t~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +...         ..+.|.++|..+.+.  +..+.. ...+..++++||++ .++++...++.|.|+|+.+++.+++.
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            4331         125799999998873  333332 35789999999999 65555557889999999999998876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.19  E-value=2.1e-09  Score=97.09  Aligned_cols=235  Identities=15%  Similarity=0.220  Sum_probs=169.3

Q ss_pred             CCCCEEEEecCCCcEEEeeC-CCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          207 EKGNFMAVGSMEPAIEIWDL-DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      |...-+++.+.|.+++||-- +.++....                          ....-..+++++++++. ...|+.|
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wps--------------------------I~~~mP~~~~~~~y~~e-~~~L~vg   86 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPS--------------------------IYHYMPSPCSAMEYVSE-SRRLYVG   86 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCch--------------------------hhhhCCCCceEeeeecc-ceEEEEE
Confidence            45666899999999999953 32221111                          11134578999999998 5589999


Q ss_pred             ecCCcEEEEeCC----CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeC
Q 010748          286 SADKQVKIWDVA----AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       286 s~dg~v~vwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      -..|++.-+.+.    ....++....|...|..+-|+-.. ..+++.+.|..+.---.+.+.... ........+++.+.
T Consensus        87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg-~Y~~~~~~t~~~~d  164 (404)
T KOG1409|consen   87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLG-GYNFETPASALQFD  164 (404)
T ss_pred             EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCccc-ceEeeccCCCCcee
Confidence            999999988654    345566677899999999998766 788888888877544444443332 12222222222222


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      -  . +.++|...|.|..-.+....       ..++.++.+|...+.+++|.|.. .+|.+|..|..+.+||+...+. .
T Consensus       165 ~--~-~~fvGd~~gqvt~lr~~~~~-------~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g-~  232 (404)
T KOG1409|consen  165 A--L-YAFVGDHSGQITMLKLEQNG-------CQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKG-T  232 (404)
T ss_pred             e--E-EEEecccccceEEEEEeecC-------CceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcc-e
Confidence            2  1 55666667776665554332       37788999999999999999976 9999999999999999987653 4


Q ss_pred             EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .....+|...|..+...+--+ .|.+++.||.|.+|++....
T Consensus       233 ~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  233 AYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEecccee
Confidence            567778889999988888777 58889999999999996543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.18  E-value=3.3e-08  Score=106.58  Aligned_cols=314  Identities=15%  Similarity=0.224  Sum_probs=188.7

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEE--ecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYIL--EESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ....|-++.+.++...|+++...|     .|..+  +....   .....--..+..-..|++|       |||+.+||..
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~G-----di~~~~~~~~~~---~~~~E~VG~vd~GI~a~~W-------SPD~Ella~v  138 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASG-----DIILVREDPDPD---EDEIEIVGSVDSGILAASW-------SPDEELLALV  138 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCc-----eEEEEEccCCCC---CceeEEEEEEcCcEEEEEE-------CCCcCEEEEE
Confidence            456899999999999999999888     45544  22111   1111111224444578899       8999999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcc-----------eec---CCcchh-hhhhccc----cCCcccc---cccccCcccceeeEE
Q 010748          216 SMEPAIEIWDLDVIDEVQPH-----------VIL---GGIDEE-KKKKKSK----KGKKSSI---KYKKGSHTDSVLGLA  273 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~-----------~~l---~~~~~~-~~~~~~~----~~~~~~~---~~~~~~h~~~V~~l~  273 (502)
                      +.+++|.+..-+ .+.+...           .+-   |++..+ +.+..+.    .......   ...+. +.+.-..|+
T Consensus       139 T~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS  216 (928)
T PF04762_consen  139 TGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS  216 (928)
T ss_pred             eCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence            999998876432 1111100           000   111000 0000000    0000000   11222 555677899


Q ss_pred             eccCCCcEEEEEec---C---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEecCCCCC
Q 010748          274 WNKEFRNILASASA---D---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDARISTH  344 (502)
Q Consensus       274 ~~~~~~~~l~sgs~---d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~  344 (502)
                      |-.| +.++|+.+.   .   ..++||+- .|....+...-.+--.+++|.|.| +++++.-.   ...|.+|.-+.-+.
T Consensus       217 WRGD-G~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrh  293 (928)
T PF04762_consen  217 WRGD-GEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRH  293 (928)
T ss_pred             ECCC-CcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEe
Confidence            9999 558887765   2   47999994 476555554444445678999999 77777654   34566776554433


Q ss_pred             ccceE---eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEE
Q 010748          345 SGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLL  420 (502)
Q Consensus       345 ~~~~~---~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l  420 (502)
                      .....   .....|..+.|++++. ++++...+. |.+|-..+..       .-..+.+... ...+..+.|+|..+..|
T Consensus       294 geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~p~~L  364 (928)
T PF04762_consen  294 GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEKPLRL  364 (928)
T ss_pred             eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCCCCEE
Confidence            32222   2345789999999876 677666544 9999887652       2222333322 23455599999887888


Q ss_pred             EEEeCCCcEEEEEC----CCC----------------CeeEE--------------EEecCCCCcEEEEEEcCCCCcEEE
Q 010748          421 ATGSTDKMVKLWDL----SNN----------------QPSCI--------------ASRNPKAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       421 ~t~s~dg~i~vwd~----~~~----------------~~~~~--------------~~~~~~~~~v~~~~~spd~~~ll~  466 (502)
                      ...+..|.+..+++    ..+                ....+              ..+. ...+|.+++|++++. .++
T Consensus       365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~a  442 (928)
T PF04762_consen  365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFA  442 (928)
T ss_pred             EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEE
Confidence            88887777665443    111                10111              1111 246799999999987 488


Q ss_pred             EEeCCCcEEEEECCCC
Q 010748          467 IGGSKGKLEIWDTLSD  482 (502)
Q Consensus       467 sg~~dg~i~vwd~~~~  482 (502)
                      +-..+|.|.+|.....
T Consensus       443 vl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  443 VLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EEECCCCEEEEEecCC
Confidence            8899999999986543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.5e-08  Score=97.38  Aligned_cols=284  Identities=14%  Similarity=0.176  Sum_probs=176.1

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~----  216 (502)
                      .....+++++|+++|.+..+      .++++.....   . ..+.....  -       .+++.|||-|+||.+--    
T Consensus        36 ~~~v~~~S~~G~lfA~~~~~------~v~i~~~~~~---~-~~lt~~~~--~-------~~~L~fSP~g~yL~T~e~~~i   96 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYSDNQ------VVKVFEIATL---K-VVLCVELK--K-------TYDLLFSPKGNYLLTWEPWAI   96 (566)
T ss_pred             cceeEEEcCCCcEEEEEcCC------eEEEEEccCC---c-EEEEeccc--e-------eeeeeeccccccccccccccc
Confidence            36778899999999988755      7777776654   1 11111111  1       22344588898888621    


Q ss_pred             ------CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748          217 ------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       217 ------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~  290 (502)
                            ....+.+|++.++-.... .                         ....... +++.|+.+ . .|++=-..+.
T Consensus        97 ~~~~~~~~pn~~v~~vet~~~~s~-~-------------------------q~k~Q~~-W~~qfs~d-E-sl~arlv~ne  147 (566)
T KOG2315|consen   97 YGPKNASNPNVLVYNVETGVQRSQ-I-------------------------QKKMQNG-WVPQFSID-E-SLAARLVSNE  147 (566)
T ss_pred             ccCCCCCCCceeeeeeccceehhh-e-------------------------ehhhhcC-cccccccc-h-hhhhhhhcce
Confidence                  124577998876211110 0                         0011222 68899988 3 3433344577


Q ss_pred             EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCc-EEEE-----EeCCCcEEEEecCCCCCc---cceEeecCCeeEEEeC
Q 010748          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ-ILLS-----GSFDRSVVMKDARISTHS---GFKWAVAADVESLAWD  361 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s-----~s~dg~i~iwd~~~~~~~---~~~~~~~~~v~~v~~~  361 (502)
                      |++|++..-+.... .-|...|+.+.++|.... .+++     .+.-+.|+||........   ....-....-..+.|+
T Consensus       148 v~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN  226 (566)
T KOG2315|consen  148 VQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWN  226 (566)
T ss_pred             EEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEec
Confidence            99999877432221 236788999999998433 3332     345568999987632211   1111123344567888


Q ss_pred             CCCCCEEEEEeC-----------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE-EeCCCcE
Q 010748          362 PHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMV  429 (502)
Q Consensus       362 ~~~~~~~~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t-~s~dg~i  429 (502)
                      +-+..+|+..+.           ..+++++++...         ..+..+ ...++|.++.|+|.+..+.++ |-.-..+
T Consensus       227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~---------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkv  296 (566)
T KOG2315|consen  227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE---------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKV  296 (566)
T ss_pred             cCCceEEEEEEEeecCCCccccccceEEEEEecCc---------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceE
Confidence            877666655542           235777777622         222222 347899999999998555444 4456789


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCcccccc
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~--dg~i~vwd~~~~~~~~~~  488 (502)
                      .|||++..   .++.+  ..++-+++-|+|.|++++++|-.  .|.|-|||+.+.+++.+.
T Consensus       297 tifnlr~~---~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  297 TIFNLRGK---PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             EEEcCCCC---EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            99998754   34444  46788999999999975555433  389999999998877654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.16  E-value=1.2e-08  Score=89.40  Aligned_cols=238  Identities=15%  Similarity=0.082  Sum_probs=152.3

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .--+||.|+..|...+|...+.+.....                          -..|...|+-+.=..+...-+..++.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~--------------------------cd~snn~v~~~~r~cd~~~~~~i~sn  136 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQ--------------------------CDVSNNDVTLVKRYCDLKFPLNIASN  136 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceee--------------------------ecccccchhhhhhhcccccceeeccC
Confidence            4568999999999999998764432211                          11222222222111122234667888


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce---EeecCCeeEEEeCC
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDP  362 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~  362 (502)
                      |.++++.++.-+.....  .|..  .+.++.+++++ +++++.+....|.+|.+.........   ......-.+.+|+.
T Consensus       137 dht~k~~~~~~~s~~~~--~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~  213 (344)
T KOG4532|consen  137 DHTGKTMVVSGDSNKFA--VHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE  213 (344)
T ss_pred             CcceeEEEEecCcccce--eeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence            99999998865432222  2333  37899999999 89999999999999988765433222   12344567888988


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCCeeE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      ... .|++++.||++.|||+|......    .....+...|.+.+..+.|++.|+- +|+..-.-+.+.|.|+++.....
T Consensus       214 ~~~-~FAv~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  214 NDL-QFAVVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             Ccc-eEEEEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            654 89999999999999999873211    1112233458999999999986643 33444445779999999986433


Q ss_pred             EEEecC------CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          442 IASRNP------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       442 ~~~~~~------~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +.....      ....|+...|+.++.. +.+.+.+ .+.=|++.+
T Consensus       289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  289 VIVIPDDVERKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILS  332 (344)
T ss_pred             EEecCccccccccccccccccccCCCcc-cccccch-hhheeeccc
Confidence            333222      2245888888888764 3333333 344455543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=7.1e-10  Score=100.11  Aligned_cols=206  Identities=13%  Similarity=0.234  Sum_probs=140.8

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe-----eeEeeccCC------------CCeEEEEEcCCCC-cEEE
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----CNLTLEHHT------------DKVQAVAWNHHSP-QILL  326 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~~-~~l~  326 (502)
                      ..+-|.++.|... +.+||+|..+|.|.++.-....     ....++.|.            .+|..+.|.+++. ..++
T Consensus        24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            4577999999998 5699999999999999644322     233444443            4688999987653 5677


Q ss_pred             EEeCCCcEEEEecCCCCCcc--------------------c----------------eEeecCCeeEEEeCCCCCCEEEE
Q 010748          327 SGSFDRSVVMKDARISTHSG--------------------F----------------KWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       327 s~s~dg~i~iwd~~~~~~~~--------------------~----------------~~~~~~~v~~v~~~~~~~~~~~~  370 (502)
                      ..+.|.+|++|.++......                    .                ...|.-.|.+++++.+..  .+.
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t~l  180 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--TFL  180 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--eEe
Confidence            88899999999986432111                    0                012345688899988765  445


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCccceEEecc-----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee----E
Q 010748          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----C  441 (502)
Q Consensus       371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~----~  441 (502)
                      +..|=.|.+|++.-....      -.+.-+..+     +.-|++..|+|...++++-.+..|+|++.|++...+.    .
T Consensus       181 SADdLRINLWnlei~d~s------FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  181 SADDLRINLWNLEIIDQS------FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             eccceeeeeccccccCCc------eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            557889999998765221      112222222     3468999999987789999999999999999954310    1


Q ss_pred             EEEe----------cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          442 IASR----------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       442 ~~~~----------~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ++..          ..-...|..+.|+++|+| +++- .--+|+|||+..
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGry-ilsR-Dyltvk~wD~nm  302 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-ILSR-DYLTVKLWDLNM  302 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCcE-EEEe-ccceeEEEeccc
Confidence            1111          112346888999999997 4432 236899999943

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.15  E-value=3.3e-07  Score=84.18  Aligned_cols=289  Identities=11%  Similarity=0.182  Sum_probs=175.2

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .+.+..+-|+|+|+.+.|-++...++...+-.|.++...+   .|..-....+++-|.|-      ++.+++|++|+++.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G---~Lt~ln~~~~~g~~p~y------vsvd~~g~~vf~An  107 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG---RLTFLNRQTLPGSPPCY------VSVDEDGRFVFVAN  107 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC---eEEEeeccccCCCCCeE------EEECCCCCEEEEEE
Confidence            3456788899999999999988887777788888887655   55544445555555432      22278999999987


Q ss_pred             CC-CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec-CCcEEEE
Q 010748          217 ME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIW  294 (502)
Q Consensus       217 ~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-dg~v~vw  294 (502)
                      .. |.|.++-+.....+.+..-.-.+..          . ......   -+.-+.+..+.|+++ +|++..- --.|.+|
T Consensus       108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g----------~-~p~~rQ---~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y  172 (346)
T COG2706         108 YHSGSVSVYPLQADGSLQPVVQVVKHTG----------S-GPHERQ---ESPHVHSANFTPDGR-YLVVPDLGTDRIFLY  172 (346)
T ss_pred             ccCceEEEEEcccCCccccceeeeecCC----------C-CCCccc---cCCccceeeeCCCCC-EEEEeecCCceEEEE
Confidence            65 8999999865333322211100000          0 000001   112277888999954 6655532 3469999


Q ss_pred             eCCCCeeeEeec---cCCCCeEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCC-ccce---------EeecCCeeEEEe
Q 010748          295 DVAAGKCNLTLE---HHTDKVQAVAWNHHSPQILLS-GSFDRSVVMKDARISTH-SGFK---------WAVAADVESLAW  360 (502)
Q Consensus       295 d~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~-~~~~---------~~~~~~v~~v~~  360 (502)
                      ++..|+....-.   .-......|.|||++ ++... .-.+++|.+|....... ...+         +........+..
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi  251 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI  251 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence            999876433221   234567899999999 55544 45689999999877421 1111         122345678889


Q ss_pred             CCCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC-CcEEEEECCC--
Q 010748          361 DPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-KMVKLWDLSN--  436 (502)
Q Consensus       361 ~~~~~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d-g~i~vwd~~~--  436 (502)
                      +++|+ +|+++ .....|.+|.+......     ...+.....+...-..+.|++.+ ++|+++..+ .+|.+|....  
T Consensus       252 s~dGr-FLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         252 SPDGR-FLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             CCCCC-EEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcCCC
Confidence            99887 55554 33447888887754210     11222233444556889999988 777777664 5688886654  


Q ss_pred             CCeeEEEEecCCCCcEEEEEEc
Q 010748          437 NQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      ++...+.. ........|+.|.
T Consensus       325 G~L~~~~~-~~~~p~Pvcv~f~  345 (346)
T COG2706         325 GRLTLLGR-YAVVPEPVCVKFL  345 (346)
T ss_pred             ceEEeccc-ccCCCCcEEEEEc
Confidence            44222222 1233445566654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=6.5e-09  Score=102.29  Aligned_cols=126  Identities=16%  Similarity=0.335  Sum_probs=91.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +....|+|+|+.||.++|..+.+...-....-|.            ..........+.||...|.-+.
T Consensus        18 ~c~~W-------Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla------------a~snLsmNQtLeGH~~sV~vvT   78 (1189)
T KOG2041|consen   18 HCAEW-------NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA------------AASNLSMNQTLEGHNASVMVVT   78 (1189)
T ss_pred             EEEEE-------cccCCeEEeccccceeEEEEccccCCcccccccc------------cccccchhhhhccCcceEEEEE
Confidence            48888       5778999999999999999986532211100010            1112333446779999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      |+.+ ...|-+...+|.|.||-+-.|.-...+  ....+-|.+++|+.+| ..+.....||.|.+=.+.
T Consensus        79 WNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   79 WNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             eccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeec
Confidence            9998 568999999999999998877644333  2245678999999999 777777888877664443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.12  E-value=2.6e-09  Score=95.20  Aligned_cols=253  Identities=18%  Similarity=0.254  Sum_probs=159.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCC-CcCc-ceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVID-EVQP-HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNIL  282 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l  282 (502)
                      ...|.|||+|...|.|.+|.-.... +... ++.++++...            --......-...|..+.|..+ +++.+
T Consensus        35 d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E------------FDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          35 DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE------------FDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             ccccceEeecCCCceEEEeecccccccchhhhhhhcccccc------------hhhhhhccHHHHhhheeeecCCCcceE
Confidence            5679999999999999999764321 1110 0111111000            000000012356888888654 55677


Q ss_pred             EEEecCCcEEEEeCCCCe-------------------e-----------------------eEee-ccCCCCeEEEEEcC
Q 010748          283 ASASADKQVKIWDVAAGK-------------------C-----------------------NLTL-EHHTDKVQAVAWNH  319 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~-------------------~-----------------------~~~~-~~h~~~v~~l~~~~  319 (502)
                      +..+.|.+|++|.+....                   +                       .+.+ ..|...|.++.|+.
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            778899999999875320                   0                       0011 34677788999998


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCCCccceEe--------ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 010748          320 HSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS  391 (502)
Q Consensus       320 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~  391 (502)
                      +. ..++++ .|=.|.+|++...........        ...-|++..|+|...+.|..++..|.|++-|+|........
T Consensus       183 D~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         183 DK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             ch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            87 555554 577899999876554322221        12348899999988888999999999999999965321111


Q ss_pred             CCCccceE----------EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC------------
Q 010748          392 TSQQSSFT----------LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA------------  449 (502)
Q Consensus       392 ~~~~~~~~----------~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~------------  449 (502)
                         ..++.          +..-...|+.+.|+++| +++++-.. -+|++||++..+. ++.+.+.|.            
T Consensus       261 ---~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~-pikTi~~h~~l~~~l~d~YEn  334 (460)
T COG5170         261 ---KKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKN-PIKTIPMHCDLMDELNDVYEN  334 (460)
T ss_pred             ---hhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccC-CceeechHHHHHHHHHhhhhc
Confidence               11111          12234678899999988 78877554 5799999987652 556655442            


Q ss_pred             CcE---EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          450 GAV---FSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       450 ~~v---~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      ..|   +.+.|+.+... +.+|+..+..-+|-+
T Consensus       335 DaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~  366 (460)
T COG5170         335 DAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPT  366 (460)
T ss_pred             cceeeeEEEEecCCccc-ccccccccceeeecc
Confidence            223   46788888875 777887777777653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.10  E-value=2.7e-08  Score=87.12  Aligned_cols=201  Identities=13%  Similarity=0.016  Sum_probs=136.5

Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      .+||.|+..|...+|...+.+....+ ..|...|+-+.=.-+...-+..++.|.+++++++.............-.+.++
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~  164 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL  164 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence            38999999999999999876543332 33444343222111222346677888888888887554332222111337889


Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce-EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      ++++++. +.++.+....|..|.+.....       ..+. .....+..-.+.+|+... ..+|++..||++.|||++..
T Consensus       165 ~~snd~~-~~~~Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  165 HYSNDPS-WGSSVGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             EEcCCCc-eEEEecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc
Confidence            9999866 777778888999999876521       2222 333445556788899876 89999999999999999876


Q ss_pred             Cee---EEEEecCCCCcEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCccccccc
Q 010748          438 QPS---CIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       438 ~~~---~~~~~~~~~~~v~~~~~spd~~~-ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ...   ...+.+.|.|.++.+.|++.|.. ||...-.-+.+.|-|+++......+.
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            432   23345678999999999987643 23333445789999999988765544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=1.4e-10  Score=110.66  Aligned_cols=210  Identities=19%  Similarity=0.274  Sum_probs=144.0

Q ss_pred             ccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC-------CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 010748          260 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA-------AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR  332 (502)
Q Consensus       260 ~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg  332 (502)
                      ..+.||+..|..++--.+ .+-++++|.|++|++|.++       +..|..+++.|+.+|..+.|-.+. ++++  +.||
T Consensus       729 ~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD~  804 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCDG  804 (1034)
T ss_pred             ecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--eccC
Confidence            356799999999987666 6789999999999999986       335788899999999999998876 5554  5689


Q ss_pred             cEEEEecCCCCCccc-eEe-ecCCeeEEEeCCC-CCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEE---eccCC
Q 010748          333 SVVMKDARISTHSGF-KWA-VAADVESLAWDPH-AEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDK  405 (502)
Q Consensus       333 ~i~iwd~~~~~~~~~-~~~-~~~~v~~v~~~~~-~~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~---~~h~~  405 (502)
                      .|.+||.-.++.... .+. ..+.+..+..-++ ...++++| +...+|+++|.|...-       .+-+..   .+...
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-------~~E~kVcna~~Pna  877 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-------TCELKVCNAPGPNA  877 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-------eeeEEeccCCCCch
Confidence            999999766655432 221 1222222322222 22344444 7888999999998631       222222   34456


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE-EECCCCcc
Q 010748          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI-WDTLSDAG  484 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~v-wd~~~~~~  484 (502)
                      -+.+++..+.| +.++++-..|.|.+.|.++++  .+............++ .|..++ |+....|.++.| |-...+..
T Consensus       878 ~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~--vINswrpmecdllqla-apsdq~-L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  878 LTRAIAVADKG-NKLAAALSNGCIAILDARNGK--VINSWRPMECDLLQLA-APSDQA-LAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             heeEEEeccCc-chhhHHhcCCcEEEEecCCCc--eeccCCcccchhhhhc-CchhHH-HHhhcccceeEeeehhcCCee
Confidence            68899999988 899999999999999999997  2333332222233333 244553 777777888888 87766654


Q ss_pred             c
Q 010748          485 I  485 (502)
Q Consensus       485 ~  485 (502)
                      .
T Consensus       953 h  953 (1034)
T KOG4190|consen  953 H  953 (1034)
T ss_pred             e
Confidence            3

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=8.6e-10  Score=118.32  Aligned_cols=186  Identities=17%  Similarity=0.247  Sum_probs=139.3

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      +.|.++.=||...+.++|+.++   .+++|.|..+.    .+++...... +....       ..|+.+|+.+.++..||
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dg---sv~~~~w~~~~----~v~~~rt~g~-s~vtr-------~~f~~qGnk~~i~d~dg 2273 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDG---SVRMFEWGHGQ----QVVCFRTAGN-SRVTR-------SRFNHQGNKFGIVDGDG 2273 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCc---eEEEEeccCCC----eEEEeeccCc-chhhh-------hhhcccCCceeeeccCC
Confidence            5688899999999999999887   56777776554    4444443222 22222       23477899999999999


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe---cCCcEEEEeC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS---ADKQVKIWDV  296 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs---~dg~v~vwd~  296 (502)
                      .+.+|...                            .++....+.|......+.|-.   ..+++++   .++.+.+||.
T Consensus      2274 ~l~l~q~~----------------------------pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2274 DLSLWQAS----------------------------PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred             ceeecccC----------------------------CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhc
Confidence            99999986                            122223446888888888875   3666664   4688999996


Q ss_pred             CCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          297 AAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       297 ~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      .-.   .++.  ..|.+.++++++-|.. ++|++|+.+|.|++||++..+.......         ++  ...+|++|+.
T Consensus      2323 l~~~~~s~v~--~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss 2388 (2439)
T KOG1064|consen 2323 LLPPMNSLVH--TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSS 2388 (2439)
T ss_pred             ccCcccceee--eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCc
Confidence            432   2333  7799999999999999 9999999999999999998765542222         33  3458999999


Q ss_pred             CCcEEEEECCCC
Q 010748          374 DGTIKGFDIRTA  385 (502)
Q Consensus       374 dg~v~i~d~~~~  385 (502)
                      .|.++||++...
T Consensus      2389 ~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2389 EGNIKIWRLSEF 2400 (2439)
T ss_pred             ccceEEEEcccc
Confidence            999999999876

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.09  E-value=9.5e-10  Score=108.44  Aligned_cols=221  Identities=18%  Similarity=0.279  Sum_probs=156.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s  284 (502)
                      +|.|+-+|.++.-|.. +-|++..  ..|...                       ....-.-.|-...|+|.. ..+-++
T Consensus        33 ~p~grdi~lAsr~gl~-i~dld~p--~~ppr~-----------------------l~h~tpw~vad~qws~h~a~~~wiV   86 (1081)
T KOG0309|consen   33 NPSGRDIVLASRQGLY-IIDLDDP--FTPPRW-----------------------LHHITPWQVADVQWSPHPAKPYWIV   86 (1081)
T ss_pred             ccccchhhhhhhcCeE-EEeccCC--CCCcee-----------------------eeccCcchhcceecccCCCCceeEE
Confidence            6778888888876654 5577531  111111                       000112246677787752 123333


Q ss_pred             EecCCcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEe
Q 010748          285 ASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAW  360 (502)
Q Consensus       285 gs~dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~  360 (502)
                      ......-.+|++...   ..-..+-+|+..|+.+.|+|+.+.++++++.|-.+..||+|++......+ ........|.|
T Consensus        87 sts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkw  166 (1081)
T KOG0309|consen   87 STSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKW  166 (1081)
T ss_pred             ecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeee
Confidence            344456678988533   33445578999999999999999999999999999999999987655433 34566788999


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      +...++ +++.+....|++||++.+        ..++..+.+|...|.++.|+......+.+++.|++|++||.......
T Consensus       167 nyk~p~-vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  167 NYKDPN-VLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             cccCcc-hhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence            987774 556666778999999998        68899999999999999999876678999999999999998765432


Q ss_pred             EEEEecCCCCcEEEEEEcCCCC
Q 010748          441 CIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~spd~~  462 (502)
                      ..... ....+|+.-.+.|-|.
T Consensus       238 ~~~~v-tt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  238 SKRTV-TTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             cceec-cccCcceeccccccCc
Confidence            22222 2345677777777553

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=8e-08  Score=92.30  Aligned_cols=282  Identities=14%  Similarity=0.205  Sum_probs=164.0

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC---
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---  218 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d---  218 (502)
                      -+-+.|||-|.+|++-...|    +.+|-=..-..  ... ..|        ..+.++++    ||..+||+|-+..   
T Consensus       213 etyv~wSP~GTYL~t~Hk~G----I~lWGG~~f~r--~~R-F~H--------p~Vq~idf----SP~EkYLVT~s~~p~~  273 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG----IALWGGESFDR--IQR-FYH--------PGVQFIDF----SPNEKYLVTYSPEPII  273 (698)
T ss_pred             eeeEEecCCceEEEEEeccc----eeeecCccHHH--HHh-ccC--------CCceeeec----CCccceEEEecCCccc
Confidence            46789999999999988775    45553221110  011 112        13344433    8999999986543   


Q ss_pred             --------CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748          219 --------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       219 --------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~  290 (502)
                              ..|+|||+.++..+..+.++.                        +....-.-+.||.+ ..++|.-.. .+
T Consensus       274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------------------------~~~~~WP~frWS~D-dKy~Arm~~-~s  327 (698)
T KOG2314|consen  274 VEEDDNEGQQLIIWDIATGLLKRSFPVIK------------------------SPYLKWPIFRWSHD-DKYFARMTG-NS  327 (698)
T ss_pred             cCcccCCCceEEEEEccccchhcceeccC------------------------CCccccceEEeccC-CceeEEecc-ce
Confidence                    468999999887665543321                        11122334579988 557776666 57


Q ss_pred             EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC-----CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      |.||+..+-.++-.-.-.-..|....|+|.+ ++|+-=+.     -..+.+..+.+.+.+....-+.-.-..+-|-.+|.
T Consensus       328 isIyEtpsf~lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd  406 (698)
T KOG2314|consen  328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD  406 (698)
T ss_pred             EEEEecCceeeecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence            9999976643332222234678888999987 66653221     12344444433332221111111112344554444


Q ss_pred             CEEEE----------EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEE
Q 010748          366 HSFVV----------SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWD  433 (502)
Q Consensus       366 ~~~~~----------~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd  433 (502)
                       +|++          .+.-..+.|+.++..        ..++-... -...|...+|-|.|.++.+..+.  ..++.+|-
T Consensus       407 -yLcvkvdR~tK~~~~g~f~n~eIfrireK--------dIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~  476 (698)
T KOG2314|consen  407 -YLCVKVDRHTKSKVKGQFSNLEIFRIREK--------DIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYA  476 (698)
T ss_pred             -EEEEEEEeeccccccceEeeEEEEEeecc--------CCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEE
Confidence             2222          111224667777765        23443333 45678999999999555444444  35688888


Q ss_pred             CCC--CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEE--eCCCcEEEEECCC
Q 010748          434 LSN--NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG--GSKGKLEIWDTLS  481 (502)
Q Consensus       434 ~~~--~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg--~~dg~i~vwd~~~  481 (502)
                      +.+  .++.++..+..  ...+.+.|+|.|+++++.+  |..|.+.++|+.-
T Consensus       477 ~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  477 VETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             eecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            773  33344444443  5678899999999865543  3478999999975

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.04  E-value=4.6e-07  Score=80.81  Aligned_cols=237  Identities=15%  Similarity=0.210  Sum_probs=134.9

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCc--ceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010748          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP--LCMAWLDCPLKDREKGNFMAVGSMEPAIE  222 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~la~g~~dg~I~  222 (502)
                      +..+++|++||+....    .|+|..-...-.   .....-..+-..+|  -.++|       |||+.+||.+...|+|+
T Consensus         3 ~~~~~~Gk~lAi~qd~----~iEiRsa~Ddf~---si~~kcqVpkD~~PQWRkl~W-------SpD~tlLa~a~S~G~i~   68 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQ----CIEIRSAKDDFS---SIIGKCQVPKDPNPQWRKLAW-------SPDCTLLAYAESTGTIR   68 (282)
T ss_pred             eeecCCCcEEEEEecc----EEEEEeccCCch---heeEEEecCCCCCchheEEEE-------CCCCcEEEEEcCCCeEE
Confidence            4567899999888643    567766554443   33222233333333  13444       99999999999999999


Q ss_pred             EeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-----CcEEEEEecCCcEEEEeCC
Q 010748          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNILASASADKQVKIWDVA  297 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----~~~l~sgs~dg~v~vwd~~  297 (502)
                      +||+...... .  +.++               .   .....-..+|..|.|.+..     ...|+.-...|.++-|-+.
T Consensus        69 vfdl~g~~lf-~--I~p~---------------~---~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs  127 (282)
T PF15492_consen   69 VFDLMGSELF-V--IPPA---------------M---SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS  127 (282)
T ss_pred             EEecccceeE-E--cCcc---------------c---ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence            9998642221 1  1000               0   0011234677778776542     2356666777888777653


Q ss_pred             CC-----eeeEee---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEE
Q 010748          298 AG-----KCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       298 ~~-----~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~  369 (502)
                      .+     +..++|   ..+...|.++.|+|.. ++|++|+....      +..    ........+++-..-.+.+.+..
T Consensus       128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~----~s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDG----MSKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             cccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCc----cccccccCceEEEEcCCCCcEEE
Confidence            22     333444   2357799999999998 67777665332      000    01111222333222222232222


Q ss_pred             EE-eCCCc------EEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          370 VS-LEDGT------IKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       370 ~~-~~dg~------v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +. ..++.      ..+|.+-+          ...+.. ......|..|..||+| .+||+...+|.|.+|++.+-+
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~----------~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPS----------FKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ccccCccccccccccceeeccc----------eeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence            22 22221      12222221          111111 2245679999999998 999999999999999998765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=5.7e-07  Score=80.23  Aligned_cols=196  Identities=16%  Similarity=0.245  Sum_probs=117.3

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc-------CCCCeEEEEEcCCC-----CcEEEEEeCCCcE
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHS-----PQILLSGSFDRSV  334 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~-----~~~l~s~s~dg~i  334 (502)
                      -.-+.++|+|+ ..+||.+...|+|+++|+.... +..+..       .+..|..|.|.+..     ...|++-.+.|.+
T Consensus        44 PQWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L  121 (282)
T PF15492_consen   44 PQWRKLAWSPD-CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL  121 (282)
T ss_pred             chheEEEECCC-CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence            34678999999 6699999999999999987533 233321       23567777775432     2467888889999


Q ss_pred             EEEecCCCCCccce----E----eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC
Q 010748          335 VMKDARISTHSGFK----W----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA  406 (502)
Q Consensus       335 ~iwd~~~~~~~~~~----~----~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~  406 (502)
                      +-|-+..+......    +    ..+..|.++.|+|... +|++|+....      ..+             ...+....
T Consensus       122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~------~~~-------------~s~a~~~G  181 (282)
T PF15492_consen  122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQN------QDG-------------MSKASSCG  181 (282)
T ss_pred             eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCC------CCc-------------cccccccC
Confidence            88876433211111    1    2366899999999755 5555543221      000             00112223


Q ss_pred             eeEEEEcCCCCCEEEEEeC-CCc------EEEEECCCCCeeEEEEe-cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          407 VCTISYNPLVPNLLATGST-DKM------VKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~-dg~------i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      +++-..-...|.+..+.+. ++.      ..+|.+-+.+   .+.. ......|..|..||||. +||+...+|.|.+|+
T Consensus       182 LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  182 LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK---FFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWE  257 (282)
T ss_pred             ceEEEEcCCCCcEEEccccCccccccccccceeecccee---eeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEe
Confidence            3333333322333322222 221      2344433322   2222 23456799999999999 699999999999999


Q ss_pred             CCCCcccccc
Q 010748          479 TLSDAGISNR  488 (502)
Q Consensus       479 ~~~~~~~~~~  488 (502)
                      +-+-...+..
T Consensus       258 iPsL~~~~~W  267 (282)
T PF15492_consen  258 IPSLRLQRSW  267 (282)
T ss_pred             cCcchhhccc
Confidence            9887665543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=1.2e-07  Score=94.45  Aligned_cols=298  Identities=12%  Similarity=0.110  Sum_probs=192.7

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCC---CCCC--CCEE
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK---DREK--GNFM  212 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~s~~--~~~l  212 (502)
                      +.....++.|+|.|. ||.|+..      -|.+.+...-+......+|.    +....+.|.+...-   +||.  .-+|
T Consensus        14 ~~sN~~A~Dw~~~GL-iAygshs------lV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lli   82 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSGL-IAYGSHS------LVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLI   82 (1062)
T ss_pred             CcccccccccCccce-EEEecCc------eEEEEehhhhhhhhccccCc----cceeEEEeccCCCchhccCccccceeE
Confidence            444578899999984 5555533      45555544432223334443    44578889765432   2332  4467


Q ss_pred             EEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC---CCcEEEEEecCC
Q 010748          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNILASASADK  289 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~~l~sgs~dg  289 (502)
                      |++...|.|.+||+...                           .....+..|.++|..++|-+.   .+.+|+.-....
T Consensus        83 AsaD~~GrIil~d~~~~---------------------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss  135 (1062)
T KOG1912|consen   83 ASADISGRIILVDFVLA---------------------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS  135 (1062)
T ss_pred             EeccccCcEEEEEehhh---------------------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence            78888899999998642                           223345578899999999653   346777777788


Q ss_pred             cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---ccceE----eecC---------
Q 010748          290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKW----AVAA---------  353 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~----~~~~---------  353 (502)
                      +|.+|+..+|+.+...........|+.+.|-..+.+..-+..|.+.+.+.-..+.   ....+    .|..         
T Consensus       136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a  215 (1062)
T KOG1912|consen  136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA  215 (1062)
T ss_pred             EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence            9999999999999888776777888999998877777777778777776532111   11111    1100         


Q ss_pred             ----------------CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          354 ----------------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       354 ----------------~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                                      -...++|+|+-.+.+++. -...+.++|+.-.         .++.......+.+.-+.+-|+..
T Consensus       216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~---------~~l~vvpier~~akfv~vlP~~~  285 (1062)
T KOG1912|consen  216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYE---------CCLAVVPIERGGAKFVDVLPDPR  285 (1062)
T ss_pred             ccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhh---------ceeEEEEeccCCcceeEeccCCC
Confidence                            012356788766555544 4667999999875         66777776677777777777642


Q ss_pred             -CEEEEEeCCCcEEEEECCCCCe-----------------eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          418 -NLLATGSTDKMVKLWDLSNNQP-----------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       418 -~~l~t~s~dg~i~vwd~~~~~~-----------------~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                       ..|++...||.+.+|-.+....                 .++..  .....+.....+|..+..++.--++|.+.+|.+
T Consensus       286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~--m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l  363 (1062)
T KOG1912|consen  286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP--MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQL  363 (1062)
T ss_pred             cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee--chhcccceeecCCCChhhhhhhhhcchhHHHhh
Confidence             5788899999999997654210                 01111  112233444556664445665667888999999


Q ss_pred             CCCccc
Q 010748          480 LSDAGI  485 (502)
Q Consensus       480 ~~~~~~  485 (502)
                      +++..-
T Consensus       364 ~~~ri~  369 (1062)
T KOG1912|consen  364 SNGRIH  369 (1062)
T ss_pred             hcCCcC
Confidence            876543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=4.4e-07  Score=90.07  Aligned_cols=196  Identities=12%  Similarity=0.037  Sum_probs=120.3

Q ss_pred             ceeeEEeccCCCcEEEEEec---CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEecCCC
Q 010748          268 SVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARIS  342 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~i~iwd~~~~  342 (502)
                      .+....|+|++..+++..+.   ...|.++|+.+++...... ..+......|+|+|..++++.+.+  ..|.++++.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            67789999996644554333   3469999998886544333 455667788999996666666555  45777787766


Q ss_pred             CCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748          343 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      .... ............|+|+|..+++++...|  .|+++|+.++.         . ..+.....  ....|+|+|..++
T Consensus       268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---------~-~rlt~~g~--~~~~~SPDG~~Ia  334 (419)
T PRK04043        268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---------V-EQVVFHGK--NNSSVSTYKNYIV  334 (419)
T ss_pred             cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---------e-EeCccCCC--cCceECCCCCEEE
Confidence            5333 2223333445689999987777765555  47777776552         1 11111111  1248999994444


Q ss_pred             EEEeCC--------CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEECCC
Q 010748          421 ATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLS  481 (502)
Q Consensus       421 ~t~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~--i~vwd~~~  481 (502)
                      ++....        ..|.+.|+.++....+.. .   +......|+|||+.++.+....+.  |.+.++..
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-N---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeEECCC-C---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            444332        368888988877433322 1   223358899999976555544444  55666644

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.97  E-value=6.4e-07  Score=98.63  Aligned_cols=168  Identities=9%  Similarity=0.153  Sum_probs=112.0

Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc---------C------CCCeEEEEEcCCCCcEEEEEeCCCc
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---------H------TDKVQAVAWNHHSPQILLSGSFDRS  333 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~---------h------~~~v~~l~~~~~~~~~l~s~s~dg~  333 (502)
                      -.+++|+|+++.++++.+.++.|++||..++... .+.+         +      -.....|+++|++..++++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            3588999965777888888899999999877543 2211         1      1245679999998557777788899


Q ss_pred             EEEEecCCCCCccce------------Ee---------ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 010748          334 VVMKDARISTHSGFK------------WA---------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST  392 (502)
Q Consensus       334 i~iwd~~~~~~~~~~------------~~---------~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~  392 (502)
                      |++||+.++......            +.         .-.....+++++++. ++++-+.++.|++||..+........
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEec
Confidence            999999865421100            00         011346788999765 77888889999999997652100000


Q ss_pred             CCcc----ceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          393 SQQS----SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       393 ~~~~----~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      ....    -....+.-.....++++++| +++++-+.++.|++||+.+++.
T Consensus       843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        843 TGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence            0000    00011122356789999998 8888889999999999988753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=1.5e-07  Score=93.88  Aligned_cols=241  Identities=17%  Similarity=0.172  Sum_probs=162.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-------
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-------  278 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-------  278 (502)
                      +|.| +||.|+. ..|.|-|..+.+.++                           ....|...|+.+.|.|..       
T Consensus        24 ~~~G-LiAygsh-slV~VVDs~s~q~iq---------------------------sie~h~s~V~~VrWap~~~p~~llS   74 (1062)
T KOG1912|consen   24 SPSG-LIAYGSH-SLVSVVDSRSLQLIQ---------------------------SIELHQSAVTSVRWAPAPSPRDLLS   74 (1062)
T ss_pred             Cccc-eEEEecC-ceEEEEehhhhhhhh---------------------------ccccCccceeEEEeccCCCchhccC
Confidence            5544 7888774 567777765433222                           334688999999998741       


Q ss_pred             ----CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEecCCCCCccceEee
Q 010748          279 ----RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       279 ----~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  351 (502)
                          .-+||++...|.|.+||...+..+..+..|..+++.++|-+..   ..+|++-....++.+|+..+++..-.....
T Consensus        75 ~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys  154 (1062)
T KOG1912|consen   75 PSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS  154 (1062)
T ss_pred             ccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence                2367888889999999999999999999999999999997532   367888888899999999988754322223


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC-------------------------C
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-------------------------A  406 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-------------------------~  406 (502)
                      .....|+.+.|.....|...+..|.|.+-+.-........  .+..+.-..|..                         .
T Consensus       155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity  232 (1062)
T KOG1912|consen  155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY  232 (1062)
T ss_pred             CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence            3456679999988888888888888888776543321111  111111112211                         0


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCC--CcEEEEEeCCCcEEEEECCC
Q 010748          407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS--PFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~--~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ...++|+|.-.+.++. .....+.|+|+.-.....+..+.  .+.+.-+.+-|+.  . .|.+.-.+|.+.+|-.+.
T Consensus       233 ~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd-~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  233 CAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRD-ALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcc-eEEEEecCCeEEEEEeec
Confidence            1235678876444443 34566999999887744444444  3444456666654  4 588899999999997655

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.96  E-value=3.6e-06  Score=91.12  Aligned_cols=304  Identities=16%  Similarity=0.257  Sum_probs=184.7

Q ss_pred             CccccccccccCCCceEEEEEecCCcc-eeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVS-HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~-~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .++.-..++|..||.++|+.+.+.... .-.+.+|+.. +   .|....+ .+++..-+++|       .|.|++||+..
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G---~L~stSE-~v~gLe~~l~W-------rPsG~lIA~~q  275 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G---ELQSTSE-PVDGLEGALSW-------RPSGNLIASSQ  275 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c---eEEeccc-cCCCccCCccC-------CCCCCEEEEEE
Confidence            455677899999999999998743322 3344555544 2   4443333 56666677888       79999999876


Q ss_pred             C---CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          217 M---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       217 ~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      .   ...|.+|.-+....                        ......+......|..|+||++ +.+||....|. |.+
T Consensus       276 ~~~~~~~VvFfErNGLrh------------------------geF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~~-vqL  329 (928)
T PF04762_consen  276 RLPDRHDVVFFERNGLRH------------------------GEFTLRFDPEEEKVIELAWNSD-SEILAVWLEDR-VQL  329 (928)
T ss_pred             EcCCCcEEEEEecCCcEe------------------------eeEecCCCCCCceeeEEEECCC-CCEEEEEecCC-ceE
Confidence            4   34566666442111                        1112222245678999999999 66998877654 999


Q ss_pred             EeCCCCe--eeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC----CCCC--------c-------------
Q 010748          294 WDVAAGK--CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR----ISTH--------S-------------  345 (502)
Q Consensus       294 wd~~~~~--~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~----~~~~--------~-------------  345 (502)
                      |-..+-.  ..+.+. .....+..+.|+|..+..|...+.+|.+..+++.    ....        .             
T Consensus       330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf  409 (928)
T PF04762_consen  330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPF  409 (928)
T ss_pred             EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecc
Confidence            9887653  222222 1234455699999988888888887777665532    1100        0             


Q ss_pred             ----------cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE----------EeccCC
Q 010748          346 ----------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----------LHAHDK  405 (502)
Q Consensus       346 ----------~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~----------~~~h~~  405 (502)
                                .........|..++|++.+. .+++-..+|.|.+|........... .......          ......
T Consensus       410 ~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  487 (928)
T PF04762_consen  410 RRAVVPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVK-PPKLLSSISLDSMDISDSELPLG  487 (928)
T ss_pred             cccCCCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCccccc-Ccchhhhcccccccccccccccc
Confidence                      01123467899999999765 4888889999999986543211000 0011111          112234


Q ss_pred             CeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCC-eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          406 AVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      .+..++|.... .+++....+   ..+.++++.... ...+.......+.+..+...+... .++.-..+|.+...+...
T Consensus       488 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~  565 (928)
T PF04762_consen  488 SLRQLAWLNDD-TLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDG  565 (928)
T ss_pred             cEEEEEEeCCC-EEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCC
Confidence            57788887765 555554443   568888875432 223333334456666666666654 355567788888666554


Q ss_pred             Cc
Q 010748          482 DA  483 (502)
Q Consensus       482 ~~  483 (502)
                      ..
T Consensus       566 ~~  567 (928)
T PF04762_consen  566 EL  567 (928)
T ss_pred             Cc
Confidence            43

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.93  E-value=6.8e-07  Score=84.52  Aligned_cols=175  Identities=14%  Similarity=0.121  Sum_probs=131.4

Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC-cEEEEecCCCCCccceEeec
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~  352 (502)
                      |++-.+.+++..|. |...|.+...+-.++ + +|...|.-..+..++ .-++.|..|| .+-++|.++..... ....-
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l  401 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL  401 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEE-eeCCc
Confidence            45545678888887 778888766554433 2 466778888888777 5789999999 99999999876544 44556


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC----c
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----M  428 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----~  428 (502)
                      +.|.++..+|+|. .++++.....|.++|+.++         .....-....+-|+.+.|+|++ +++|-+--+|    .
T Consensus       402 g~I~av~vs~dGK-~~vvaNdr~el~vididng---------nv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~  470 (668)
T COG4946         402 GNIEAVKVSPDGK-KVVVANDRFELWVIDIDNG---------NVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQS  470 (668)
T ss_pred             cceEEEEEcCCCc-EEEEEcCceEEEEEEecCC---------CeeEecccccceeEEEEEcCCc-eeEEEecCcceeeee
Confidence            7899999999876 7888888899999999987         3333344556789999999998 8998877665    5


Q ss_pred             EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEE
Q 010748          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~s  467 (502)
                      |+++|+.+++...+.+..   +.=.+-+|.|+++||...
T Consensus       471 Iklydm~~~Kiy~vTT~t---a~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         471 IKLYDMDGGKIYDVTTPT---AYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EEEEecCCCeEEEecCCc---ccccCcccCCCCcEEEEE
Confidence            899999998744343333   334567899999985443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.93  E-value=3.4e-08  Score=88.23  Aligned_cols=274  Identities=13%  Similarity=0.271  Sum_probs=165.3

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC--CCCe---eeeeccc--------cCCCcceeeeecCCCC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNL---YVHHHII--------IPAFPLCMAWLDCPLK  204 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~--~~~l---~~~~~~~--------~~~~~~~~~~~~~~~~  204 (502)
                      ..+-|+++.|..+|.+|++|-..|     +|..|......  +..+   +..|+..        +......++|+.-   
T Consensus        25 ead~ItaVefd~tg~YlatGDkgG-----RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~---   96 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGG-----RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD---   96 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCc-----eEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC---
Confidence            456799999999999999997666     66666544321  1111   1223222        2223456777621   


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCC--cCccee-------cCCcc-hhhhhhccccCC------cccccccccCcccc
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDE--VQPHVI-------LGGID-EEKKKKKSKKGK------KSSIKYKKGSHTDS  268 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~--~~~~~~-------l~~~~-~~~~~~~~~~~~------~~~~~~~~~~h~~~  268 (502)
                        .+.+.++..+.|.+|++|.+.....  +....+       .++.. ..+......-..      ....+.....|.-.
T Consensus        97 --t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh  174 (460)
T COG5170          97 --TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH  174 (460)
T ss_pred             --CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence              2345667777899999999854211  000000       00000 000000000000      01111223578899


Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCCCee---eEeeccCC-----CCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKC---NLTLEHHT-----DKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~---~~~~~~h~-----~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      |.+++|+.+ ...+++ +.|=.|.+|++.....   +.-++.|.     .-|++..|+|.....+.-++..|.|++-|+|
T Consensus       175 iNSiS~NsD-~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         175 INSISFNSD-KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             eeeeeecCc-hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            999999998 445555 4567899999874321   22334443     4688999999987888899999999999999


Q ss_pred             CCCCcc---c-------------eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC
Q 010748          341 ISTHSG---F-------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  404 (502)
Q Consensus       341 ~~~~~~---~-------------~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~  404 (502)
                      ......   .             .......|..+.|++.|.  ++.+..--+|++||++..        ..++.++..|.
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIlsRdyltvkiwDvnm~--------k~pikTi~~h~  322 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILSRDYLTVKIWDVNMA--------KNPIKTIPMHC  322 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc--EEEEeccceEEEEecccc--------cCCceeechHH
Confidence            532210   0             011234677889999765  444555678999999988        47777776653


Q ss_pred             C------------Ce---eEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748          405 K------------AV---CTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       405 ~------------~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      .            .|   ..+.|+.+. ..+++|+..+..-+|-.
T Consensus       323 ~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         323 DLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeecc
Confidence            1            22   346777765 67778887777777653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=7.2e-09  Score=93.81  Aligned_cols=171  Identities=15%  Similarity=0.185  Sum_probs=123.1

Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCc
Q 010748          316 AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  395 (502)
Q Consensus       316 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~  395 (502)
                      +|+-.-.-+-++.+.+..|.+-++.++-...  +...+.|.++.|...++ ++..|+.+|.|..+|+|......    ..
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--f~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~----~~  290 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--FQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN----GW  290 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccc--cccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC----Cc
Confidence            5553322233666778888899998875443  44778899999988654 89999999999999999863211    23


Q ss_pred             cceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEE--EEEcCCCCcEEEEEeCCC
Q 010748          396 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFS--VAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       396 ~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~--~~~spd~~~ll~sg~~dg  472 (502)
                      +... .-|...|+++..-.....+|++.+.+|.|++||++.-+. ..+.+..+|...-.-  +...+... .++++|.|.
T Consensus       291 ~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDc  368 (425)
T KOG2695|consen  291 CAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDC  368 (425)
T ss_pred             ceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCee
Confidence            3333 348999999987764448899999999999999987662 237777777543322  23345555 477799999


Q ss_pred             cEEEEECCCCccccccccCCCCC
Q 010748          473 KLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       473 ~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      ..+||.+.++..+.+.-.....+
T Consensus       369 ytRiWsl~~ghLl~tipf~~s~~  391 (425)
T KOG2695|consen  369 YTRIWSLDSGHLLCTIPFPYSAS  391 (425)
T ss_pred             EEEEEecccCceeeccCCCCccc
Confidence            99999999999988766555544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=4e-08  Score=90.83  Aligned_cols=221  Identities=15%  Similarity=0.173  Sum_probs=139.9

Q ss_pred             cccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      .+.+|...|..|+|+|....++..++.+.+|+|.|+++..++.++..+ ..+++++|.-+..+++++|-.+|.|.+||+|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            344788999999999986668999999999999999999999999877 8899999999998999999999999999999


Q ss_pred             CCCCccceEe---ecCCeeEEEeCCCC-----CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE
Q 010748          341 ISTHSGFKWA---VAADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       341 ~~~~~~~~~~---~~~~v~~v~~~~~~-----~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  412 (502)
                      .+........   ...+|..++.-+-+     +.+++....  .+..|.+......     ..++. -....+.+.++.+
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~-----~p~vl-ele~pG~cismqy  338 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAEC-----LPCVL-ELEPPGICISMQY  338 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccC-----CCccc-ccCCCcceeeeee
Confidence            8765432221   23344444432211     112333222  2455655443210     11111 2223566677777


Q ss_pred             cCCCCCEEEEEeCCCc------EEE-EECCCCCeeEEEEecCC-CC---cE---EEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          413 NPLVPNLLATGSTDKM------VKL-WDLSNNQPSCIASRNPK-AG---AV---FSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       413 sp~~~~~l~t~s~dg~------i~v-wd~~~~~~~~~~~~~~~-~~---~v---~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .+....+|+|.-.+.+      |-+ -|...+.+.+.... .+ .+   ++   ..+.-.++..+++.+|+..+.+.+||
T Consensus       339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~-~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D  417 (463)
T KOG1645|consen  339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR-TYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD  417 (463)
T ss_pred             cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc-cccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence            7765566666554321      111 12233433332221 11 11   11   12222456677788888889999999


Q ss_pred             CCCCccccccccC
Q 010748          479 TLSDAGISNRFSK  491 (502)
Q Consensus       479 ~~~~~~~~~~~~~  491 (502)
                      ..+.+.+++.-..
T Consensus       418 ~~s~evvQ~l~~~  430 (463)
T KOG1645|consen  418 PHSFEVVQTLALS  430 (463)
T ss_pred             cchhheeeecccC
Confidence            9999988775443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=3.4e-08  Score=91.43  Aligned_cols=161  Identities=14%  Similarity=0.165  Sum_probs=110.3

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe---cC
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG---SM  217 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g---~~  217 (502)
                      ....+..+|.+++||++....   ..-+..|.....   .........++.-|..+.++       .+...+.++   +.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K---~~~~f~~~~~~~---~~kl~~~~~v~~~~~ai~~~-------~~~~sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSK---QRAVFDYRENPK---GAKLLDVSCVPKRPTAISFI-------REDTSVLVADKAGD  130 (390)
T ss_pred             cccccccCCCceEEEEEeCCC---ceEEEEEecCCC---cceeeeEeecccCcceeeee-------eccceEEEEeecCC
Confidence            345567889999999998776   233555554442   12222223334444444443       223333333   33


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      ...+.+|....+.                            .....||-..++.++|+|+ ..+++++..|..|+|-...
T Consensus       131 ~~~~di~s~~~~~----------------------------~~~~lGhvSml~dVavS~D-~~~IitaDRDEkIRvs~yp  181 (390)
T KOG3914|consen  131 VYSFDILSADSGR----------------------------CEPILGHVSMLLDVAVSPD-DQFIITADRDEKIRVSRYP  181 (390)
T ss_pred             ceeeeeecccccC----------------------------cchhhhhhhhhheeeecCC-CCEEEEecCCceEEEEecC
Confidence            3455555554211                            1123379999999999999 5699999999999998887


Q ss_pred             CCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748          298 AGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       298 ~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      ..-.+.+| -||+..|..++.-++.  .|++||.|++|++||+++++..
T Consensus       182 a~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  182 ATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             cccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCCcc
Confidence            76666666 5799999999998865  6999999999999999998865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.87  E-value=3.2e-06  Score=80.11  Aligned_cols=197  Identities=14%  Similarity=0.163  Sum_probs=135.1

Q ss_pred             cccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeee----eeccccCCCcceeeeecCCCCCC-CCCCEEEEecCCCc
Q 010748          146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV----HHHIIIPAFPLCMAWLDCPLKDR-EKGNFMAVGSMEPA  220 (502)
Q Consensus       146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~s-~~~~~la~g~~dg~  220 (502)
                      ..+.+|+.|+.....      .||.|+........|-.    ......+.+..-+.++.   -|+ .+|+++|..+. |.
T Consensus       273 ~~nsDGkrIvFq~~G------dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle---dfa~~~Gd~ia~VSR-Gk  342 (668)
T COG4946         273 NANSDGKRIVFQNAG------DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE---DFAVVNGDYIALVSR-GK  342 (668)
T ss_pred             ccCCCCcEEEEecCC------cEEEeCCCcCcceeeecCCccccccccccccCHHHhhh---hhccCCCcEEEEEec-Cc
Confidence            345678888766433      89999887762222211    11222223322233322   122 36999998876 77


Q ss_pred             EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCC-cEEEEeCCCC
Q 010748          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK-QVKIWDVAAG  299 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg-~v~vwd~~~~  299 (502)
                      ..|.+...+-.+                             ..+|...|.-..+..+ ..-++.|..|| .|-|+|..++
T Consensus       343 aFi~~~~~~~~i-----------------------------qv~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~  392 (668)
T COG4946         343 AFIMRPWDGYSI-----------------------------QVGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGG  392 (668)
T ss_pred             EEEECCCCCeeE-----------------------------EcCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCc
Confidence            777665322111                             1257777888888877 44888999999 8999999887


Q ss_pred             eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC----
Q 010748          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG----  375 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg----  375 (502)
                      +.. .+...-+.|.++..+++| .+++++.....|.+.|+.++.....-....+-|+.+.|+|++. .++-+--+|    
T Consensus       393 e~k-r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq  469 (668)
T COG4946         393 EVK-RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQ  469 (668)
T ss_pred             eEE-EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-eEEEecCcceeee
Confidence            654 455567889999999999 8899999889999999999887665556667799999999865 676665555    


Q ss_pred             cEEEEECCCC
Q 010748          376 TIKGFDIRTA  385 (502)
Q Consensus       376 ~v~i~d~~~~  385 (502)
                      .|++||+...
T Consensus       470 ~Iklydm~~~  479 (668)
T COG4946         470 SIKLYDMDGG  479 (668)
T ss_pred             eEEEEecCCC
Confidence            5788887764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=3.7e-08  Score=92.23  Aligned_cols=250  Identities=13%  Similarity=0.130  Sum_probs=166.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ..+++.+++.||.++.|.-...                        ........+..|-..|.+++.+-+ +.+++|++.
T Consensus        19 ka~fiiqASlDGh~KFWkKs~i------------------------sGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d   73 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRI------------------------SGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVED   73 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCc------------------------cceeehhhhHHHHHHHHhhhcccc-ceeEeeccC
Confidence            4789999999999999964311                        113344456689999999999988 558888777


Q ss_pred             -CCcEEEEeCCCCeeeEeecc--CCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCcc--ceEeecCCeeEEEe
Q 010748          288 -DKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW  360 (502)
Q Consensus       288 -dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~  360 (502)
                       |..++++|+.+-..+.-++.  -.+.+. +..++...  .+.++.-.++.+.++|-+...+..  ...-|..+|.++.+
T Consensus        74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y  152 (558)
T KOG0882|consen   74 PDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY  152 (558)
T ss_pred             cccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence             99999999987655433321  122221 22223221  233334457899999988765433  23357889999999


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCCC------CCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748          361 DPHAEHSFVVSLEDGTIKGFDIRTAKS------DPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~------~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      ++.+. .+++....|.|..|.....-.      .........++.+.-.....+++.|+|.+ ..+.+-+.|..|+++.+
T Consensus       153 ~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  153 NQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVF  230 (558)
T ss_pred             ecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEe
Confidence            99765 688888899999999874111      11111122233334455678999999998 88999999999999999


Q ss_pred             CCCCeeEEE---------------Ee---------------cCC-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          435 SNNQPSCIA---------------SR---------------NPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       435 ~~~~~~~~~---------------~~---------------~~~-~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      ++++.....               .+               ..| ...-+.+.|...+.|+|. |+-= .|+|.++.++.
T Consensus       231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly-~t~~-gikvin~~tn~  308 (558)
T KOG0882|consen  231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY-GTIL-GIKVINLDTNT  308 (558)
T ss_pred             ccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe-ecce-eEEEEEeecCe
Confidence            887531100               00               011 123457789999997554 4444 49999999988


Q ss_pred             cccc
Q 010748          484 GISN  487 (502)
Q Consensus       484 ~~~~  487 (502)
                      .++.
T Consensus       309 v~ri  312 (558)
T KOG0882|consen  309 VVRI  312 (558)
T ss_pred             EEEE
Confidence            7653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=8.7e-09  Score=93.28  Aligned_cols=177  Identities=18%  Similarity=0.262  Sum_probs=126.4

Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC----CCccce
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS----THSGFK  348 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~  348 (502)
                      +|+-+-.-+-++.+.+..|-+-++.+|-. ..|. .++.|.++.|+..+ ++++.|..+|.|..+|+|..    .-....
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            66543222335666777899999988743 3444 57789999999888 89999999999999999976    334456


Q ss_pred             EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEE--EcCCCCCEEEEEeCC
Q 010748          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS--YNPLVPNLLATGSTD  426 (502)
Q Consensus       349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~sp~~~~~l~t~s~d  426 (502)
                      .-|.+.|+++..-.....++++++.+|.|.+||+|..+.      ...+.+..+|...-.-+-  ..+.. ..+++++.|
T Consensus       295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD  367 (425)
T KOG2695|consen  295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD  367 (425)
T ss_pred             EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccccccccccccccc-ceEEEccCe
Confidence            678899999987764556899999999999999998632      234777888865433332  33433 788899999


Q ss_pred             CcEEEEECCCCCeeEEEEecCC--CCcEEEEEEcC
Q 010748          427 KMVKLWDLSNNQPSCIASRNPK--AGAVFSVAFSE  459 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~sp  459 (502)
                      ...|||.+..++..+...+...  ...+.+++|..
T Consensus       368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eEEEEEecccCceeeccCCCCccccccccceehhc
Confidence            9999999999985443333322  12345566643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.86  E-value=4.9e-06  Score=82.34  Aligned_cols=229  Identities=15%  Similarity=0.125  Sum_probs=137.3

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee-EEeccCCCcEEEEEe
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs  286 (502)
                      ++..+++++.+|.+..+|..+++.+.....                            ...+.+ ....   ...++.++
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------------------~~~~~~~p~v~---~~~v~v~~  152 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL----------------------------SSEVLSPPLVA---NGLVVVRT  152 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeecc----------------------------CceeecCCEEE---CCEEEEEC
Confidence            477888899999999999987654432110                            011111 1111   23677778


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeE-----EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecC---Ce--
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQ-----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAA---DV--  355 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~-----~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~---~v--  355 (502)
                      .+|.|..||..+|+.+..+......+.     +....  + ..++.+..++.+..+|.++++..-... ....   .+  
T Consensus       153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER  229 (377)
T ss_pred             CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence            899999999999998877654322111     11111  2 357788888999999998876432110 0000   00  


Q ss_pred             -eEEEeCCC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          356 -ESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       356 -~~v~~~~~-~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                       ..+.-+|. ....+++++.+|.++.||..++         ..++.....  ........  + ..++.++.+|.|..+|
T Consensus       230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG---------~~~W~~~~~--~~~~p~~~--~-~~vyv~~~~G~l~~~d  295 (377)
T TIGR03300       230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG---------RVLWKRDAS--SYQGPAVD--D-NRLYVTDADGVVVALD  295 (377)
T ss_pred             hhccCCccEEECCEEEEEEcCCEEEEEECCCC---------cEEEeeccC--CccCceEe--C-CEEEEECCCCeEEEEE
Confidence             00000110 1236888888999999999887         445544311  12222222  3 6788888999999999


Q ss_pred             CCCCCeeEEEEecCC-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          434 LSNNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~-~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ..+++.  +...... .....+...  .+. .|++++.+|.|+++|..+++.+.+.-
T Consensus       296 ~~tG~~--~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       296 RRSGSE--LWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             CCCCcE--EEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            998873  3333111 111222222  234 47778999999999999998876544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.84  E-value=7.7e-08  Score=89.10  Aligned_cols=160  Identities=15%  Similarity=0.212  Sum_probs=109.2

Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc---eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 010748          314 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  390 (502)
Q Consensus       314 ~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~  390 (502)
                      .+..++.+ ++++++..+....+++.+.......   ........+++.+..... .+.++..-|-++-+|+-+..    
T Consensus        67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~----  140 (390)
T KOG3914|consen   67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSAD----  140 (390)
T ss_pred             ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeeccc----
Confidence            34455555 7777777777777777665443111   112333445555555433 34444444555555544321    


Q ss_pred             CCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748          391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~ll~sg~  469 (502)
                         ..+...+.+|-+.++.++|+|+. ++|+|+..|..|++-.+....  .+.. ..+|...|..++.-++.  +|++||
T Consensus       141 ---~~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f--~IesfclGH~eFVS~isl~~~~--~LlS~s  212 (390)
T KOG3914|consen  141 ---SGRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF--VIESFCLGHKEFVSTISLTDNY--LLLSGS  212 (390)
T ss_pred             ---ccCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc--chhhhccccHhheeeeeeccCc--eeeecC
Confidence               13445567899999999999998 999999999999998776544  2323 24699999999998886  488999


Q ss_pred             CCCcEEEEECCCCccccc
Q 010748          470 SKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       470 ~dg~i~vwd~~~~~~~~~  487 (502)
                      .|++|++||+.+++++..
T Consensus       213 GD~tlr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDT  230 (390)
T ss_pred             CCCcEEEEecccCCcccc
Confidence            999999999999999854

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.8e-08  Score=93.06  Aligned_cols=212  Identities=17%  Similarity=0.133  Sum_probs=154.4

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC--C-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEec
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDA  339 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~--~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~  339 (502)
                      -|.+.|+.+.-...  .++++++.||.++.|--..  + ..+..+..|-..|.+++.+.++ .++.|++. |..++++|+
T Consensus         7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEe
Confidence            48888888876654  6999999999999997543  1 3455567788999999999998 88888777 999999999


Q ss_pred             CCCCCccceEeecCCeeEEEe--CCCCC--CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          340 RISTHSGFKWAVAADVESLAW--DPHAE--HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~v~~--~~~~~--~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      ..-..... .....-...+.|  ++...  .+.+....+|.+.++|-+...+       +......-|..+|.++.+++.
T Consensus        84 En~Dminm-iKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~i~y~qa  155 (558)
T KOG0882|consen   84 ENFDMINM-IKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKKIRYNQA  155 (558)
T ss_pred             eccchhhh-cccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEEEEeecc
Confidence            87665431 111111222333  22111  2333446789999999887632       455666779999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-CC-e-----------eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          416 VPNLLATGSTDKMVKLWDLSN-NQ-P-----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~-~~-~-----------~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      + ..+++....|.|.-|.... .+ |           .-++.+....+...++.|+|++.. +++-+.|..|+++.+.++
T Consensus       156 ~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtG  233 (558)
T KOG0882|consen  156 G-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTG  233 (558)
T ss_pred             c-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccc
Confidence            8 8888888899999998873 10 0           112223334566789999999995 888889999999999999


Q ss_pred             cccccc
Q 010748          483 AGISNR  488 (502)
Q Consensus       483 ~~~~~~  488 (502)
                      +.++.+
T Consensus       234 klvqei  239 (558)
T KOG0882|consen  234 KLVQEI  239 (558)
T ss_pred             hhhhhh
Confidence            987654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.82  E-value=1.2e-05  Score=74.41  Aligned_cols=220  Identities=14%  Similarity=0.100  Sum_probs=139.0

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec-cCCCcEEEEEe
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~sgs  286 (502)
                      ++.++++-...+.|..|+..+.....                          .    .......+++. ++ + .|+.+.
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------------~----~~~~~~G~~~~~~~-g-~l~v~~   58 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEV--------------------------I----DLPGPNGMAFDRPD-G-RLYVAD   58 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEE--------------------------E----ESSSEEEEEEECTT-S-EEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEE--------------------------E----ecCCCceEEEEccC-C-EEEEEE
Confidence            68888888888999999987532110                          0    11126777777 55 4 555555


Q ss_pred             cCCcEEEEeCCCCeeeEeecc-----CCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEecCCCCCccceEeecC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEH-----HTDKVQAVAWNHHSPQILLSGSFD--------RSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      .. .+.++|+.+++....+..     .....+.+++.|+| ++.++....        |.|..++.. .+ .......-.
T Consensus        59 ~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~  134 (246)
T PF08450_consen   59 SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLG  134 (246)
T ss_dssp             TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEES
T ss_pred             cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcc
Confidence            54 456669998865443332     34567899999999 666666544        446666666 23 333444456


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      ..+.++|+|++..++++-+..+.|..|++.........  ......+....+..-.+++..+| ++.++....+.|.+++
T Consensus       135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN--RRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFD  211 (246)
T ss_dssp             SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE--EEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEE
T ss_pred             cccceEECCcchheeecccccceeEEEeccccccceee--eeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEEC
Confidence            67899999998766667788899999999754110000  01111222222347889999988 7888777889999999


Q ss_pred             CCCCCeeEEEEecCCCCcEEEEEE-cCCCCcEEEEEe
Q 010748          434 LSNNQPSCIASRNPKAGAVFSVAF-SEDSPFVLAIGG  469 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~ll~sg~  469 (502)
                      .. ++........  ...+++++| -++...|++|..
T Consensus       212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEEB
T ss_pred             CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEeC
Confidence            88 6644444444  447999999 467665666643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.81  E-value=1.2e-07  Score=96.33  Aligned_cols=186  Identities=15%  Similarity=0.211  Sum_probs=135.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++..++.|+....|..+|+.+......                           ..-....|.-++.+   ..+|.+|..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---------------------------~~v~a~~v~imR~N---nr~lf~G~t  195 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRT---------------------------TNVSASGVTIMRYN---NRNLFCGDT  195 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeee---------------------------eeccCCceEEEEec---CcEEEeecc
Confidence            466677777777777788865322111                           11122236656554   348999999


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC---------CCcEEEEecCCCCCccceEeecCCeeEE
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      .|+|.+-|.++.+.++++..|++.|..+..+  | ++|++++.         |..|+|||+|.-+..... .......-+
T Consensus       196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~P~fl  271 (1118)
T KOG1275|consen  196 RGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYGPQFL  271 (1118)
T ss_pred             cceEEeecCCcCceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccCchhh
Confidence            9999999999999999999999999876654  5 78888876         456899999987655422 233334667


Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .|+|.-...+++.+..|...+-|..+....     ...++.+......+..+.+++++ ..|+.|..+|.|.+|-
T Consensus       272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hhcccccceEEEEecccceeeccccccCCC-----ccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence            888877778999999999999995544210     12344444455669999999998 9999999999999997

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.81  E-value=5.5e-06  Score=81.95  Aligned_cols=262  Identities=12%  Similarity=0.116  Sum_probs=145.5

Q ss_pred             CCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCC
Q 010748          150 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI  229 (502)
Q Consensus       150 ~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~  229 (502)
                      ++..+++++.++     .+|.++...+   .+.-.+.  ++....+.      +.  -.+..+++++.+|.|..||..++
T Consensus       104 ~~~~v~v~~~~g-----~l~ald~~tG---~~~W~~~--~~~~~~~~------p~--v~~~~v~v~~~~g~l~a~d~~tG  165 (377)
T TIGR03300       104 DGGLVFVGTEKG-----EVIALDAEDG---KELWRAK--LSSEVLSP------PL--VANGLVVVRTNDGRLTALDAATG  165 (377)
T ss_pred             cCCEEEEEcCCC-----EEEEEECCCC---cEeeeec--cCceeecC------CE--EECCEEEEECCCCeEEEEEcCCC
Confidence            456676776666     7787776554   2221111  11111110      00  13557777888999999999876


Q ss_pred             CCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCC
Q 010748          230 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT  309 (502)
Q Consensus       230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~  309 (502)
                      +.+.....                  ............+    ... + + .++.++.++.+..+|+.+|+.+.......
T Consensus       166 ~~~W~~~~------------------~~~~~~~~~~~sp----~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       166 ERLWTYSR------------------VTPALTLRGSASP----VIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             ceeeEEcc------------------CCCceeecCCCCC----EEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecccc
Confidence            54332110                  0000000011111    111 2 2 67788888999999999998765543110


Q ss_pred             C----C---eEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCccceEeecC-CeeEEEeCCCCCCEEEEEeCCCcEEE
Q 010748          310 D----K---VQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA-DVESLAWDPHAEHSFVVSLEDGTIKG  379 (502)
Q Consensus       310 ~----~---v~~l~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~~dg~v~i  379 (502)
                      .    .   ...+.-+|  .+ ..+++++.+|.+..||..+++..   |.... .......  .+ ..+++++.+|.|+.
T Consensus       221 ~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~~~---W~~~~~~~~~p~~--~~-~~vyv~~~~G~l~~  293 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGRVL---WKRDASSYQGPAV--DD-NRLYVTDADGVVVA  293 (377)
T ss_pred             CCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCcEE---EeeccCCccCceE--eC-CEEEEECCCCeEEE
Confidence            0    0   00000011  13 46788888999999999877533   22221 1111222  22 36888889999999


Q ss_pred             EECCCCCCCCCCCCCccceEEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748          380 FDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       380 ~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +|..++         ..++.... ......+....  + ..|++++.+|.|+++|..+++.  +.....+...+..--..
T Consensus       294 ~d~~tG---------~~~W~~~~~~~~~~ssp~i~--g-~~l~~~~~~G~l~~~d~~tG~~--~~~~~~~~~~~~~sp~~  359 (377)
T TIGR03300       294 LDRRSG---------SELWKNDELKYRQLTAPAVV--G-GYLVVGDFEGYLHWLSREDGSF--VARLKTDGSGIASPPVV  359 (377)
T ss_pred             EECCCC---------cEEEccccccCCccccCEEE--C-CEEEEEeCCCEEEEEECCCCCE--EEEEEcCCCccccCCEE
Confidence            999887         44444422 11222222232  3 6888999999999999999884  44444444333322222


Q ss_pred             CCCCcEEEEEeCCCcEEEE
Q 010748          459 EDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       459 pd~~~ll~sg~~dg~i~vw  477 (502)
                      .++.  |+.++.||.|+.|
T Consensus       360 ~~~~--l~v~~~dG~l~~~  376 (377)
T TIGR03300       360 VGDG--LLVQTRDGDLYAF  376 (377)
T ss_pred             ECCE--EEEEeCCceEEEe
Confidence            3343  6668899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.80  E-value=2.7e-08  Score=86.78  Aligned_cols=199  Identities=18%  Similarity=0.212  Sum_probs=123.7

Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeE------------eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~i  336 (502)
                      |+.+.+.-+  ..|+++..++.+......++.+..            .+..|+++-.+-..+-.+ +-++++..||.+.+
T Consensus        39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-CceEecCCCceEEE
Confidence            666666654  478888888777776655444332            222333322222222233 56899999999999


Q ss_pred             EecCCCCCccceEe-ecCCeeEEEeCCCCCCEEEEE-----eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE
Q 010748          337 KDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVS-----LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       337 wd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~-----~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  410 (502)
                      ++.+.-........ ......+.+....+. ++.++     ..-+..+.|+++...        ........- ..|+++
T Consensus       116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~--------t~~~~~~~~-~~v~~l  185 (319)
T KOG4714|consen  116 FSTDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIK--------TLIPSKKAL-DAVTAL  185 (319)
T ss_pred             EechHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccc--------ccccccccc-ccchhh
Confidence            99876221111110 011111122222222 22222     122345566665441        112222222 339999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +-+|...+++++|+.||.+.+||++... .....+..|..+|+.+-|+|..+--|.++++||.+-.||..+
T Consensus       186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  186 CSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            9999887899999999999999999874 345566789999999999998766789999999999999875

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.80  E-value=4.2e-09  Score=102.66  Aligned_cols=245  Identities=22%  Similarity=0.291  Sum_probs=155.2

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      -|++|..     ..+...+++|..+|.|.+-.+.....                         .......+|...+++++
T Consensus        60 kcva~~y-----~~d~cIlavG~atG~I~l~s~r~~hd-------------------------Ss~E~tp~~ar~Ct~lA  109 (783)
T KOG1008|consen   60 KCVASFY-----GNDRCILAVGSATGNISLLSVRHPHD-------------------------SSAEVTPGYARPCTSLA  109 (783)
T ss_pred             eeehhhc-----CCchhhhhhccccCceEEeecCCccc-------------------------ccceecccccccccccc
Confidence            4777641     23456899999999999987743111                         11122336889999999


Q ss_pred             eccCCCcEEEEEe----cCCcEEEEeCCCC--eee--Eeecc-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          274 WNKEFRNILASAS----ADKQVKIWDVAAG--KCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       274 ~~~~~~~~l~sgs----~dg~v~vwd~~~~--~~~--~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      |++-..++||.|-    .|..+.|||+.++  .+.  ..|.+ .-....+++|-.+. .++++|...+.+.++|+|....
T Consensus       110 wneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~  188 (783)
T KOG1008|consen  110 WNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD  188 (783)
T ss_pred             cccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhh
Confidence            9998778888873    3567999999876  222  22222 33456688999666 8899999999999999995432


Q ss_pred             ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEE-CCCCCCCCCCCCCccceEEeccC----CCeeEEEEcCCCCCE
Q 010748          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNL  419 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d-~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~sp~~~~~  419 (502)
                      .. ..-...-+..+...|...+++++. .+|.|.+|| .++.        ..++..+...+    ..+..++|+|..+.+
T Consensus       189 ~~-~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  189 SV-SSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             hh-hhhhhhhcccceecCCCCCceecc-ccCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence            22 111223455667777656555554 499999999 5544        23333333222    348999999988788


Q ss_pred             EEEEeCC-CcEEEEECCCC--------CeeEEEE----ecC--CCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEEC
Q 010748          420 LATGSTD-KMVKLWDLSNN--------QPSCIAS----RNP--KAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       420 l~t~s~d-g~i~vwd~~~~--------~~~~~~~----~~~--~~~~v~~~~~spd~~-~ll~sg~~dg~i~vwd~  479 (502)
                      +++.+.| ++|+++++...        .......    +..  ....|.+..|++..+ ....++-.+-.+.-+++
T Consensus       259 la~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V  334 (783)
T KOG1008|consen  259 LAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV  334 (783)
T ss_pred             hhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence            8888875 67999998642        1111111    121  235688888887652 12333444444444444

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=4.9e-06  Score=82.66  Aligned_cols=192  Identities=9%  Similarity=0.025  Sum_probs=112.9

Q ss_pred             CCCCCCCE-EEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748          204 KDREKGNF-MAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       204 ~~s~~~~~-la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      .|+|+|+. ++..+..   ..|.++|+.++....                            +....+.+....|+|++.
T Consensus       194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----------------------------lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----------------------------IASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----------------------------EecCCCcEEeeEECCCCC
Confidence            34899984 6654433   568888886532110                            111234455678999977


Q ss_pred             cEEEEEecC--CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCccceEeecCCe
Q 010748          280 NILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADV  355 (502)
Q Consensus       280 ~~l~sgs~d--g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v  355 (502)
                      .++++.+.+  ..|.++++.+++. ..+..+........|+|+|..++++....+  .|.++|+.++........  +. 
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-  321 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-  321 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-
Confidence            666666555  4577788877764 344434433445689999965666655545  567777776654332222  11 


Q ss_pred             eEEEeCCCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748          356 ESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      ....|+|++..+++++...        ..|.+.|+.++.          ...+... .......|+|+|..++++....+
T Consensus       322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~  390 (419)
T PRK04043        322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGN  390 (419)
T ss_pred             cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----------eEECCCC-CCcCCeEECCCCCEEEEEEccCC
Confidence            1248999998766666543        367888887652          2223222 23346889999844444433333


Q ss_pred             c--EEEEECCCCC
Q 010748          428 M--VKLWDLSNNQ  438 (502)
Q Consensus       428 ~--i~vwd~~~~~  438 (502)
                      .  +.+.++....
T Consensus       391 ~~~L~~~~l~g~~  403 (419)
T PRK04043        391 QSALGIIRLNYNK  403 (419)
T ss_pred             cEEEEEEecCCCe
Confidence            3  5666776543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.76  E-value=2.1e-05  Score=75.19  Aligned_cols=241  Identities=11%  Similarity=0.086  Sum_probs=130.2

Q ss_pred             cccCCCceEEEEEe---------cCCcceeEEEEEecCCCCCCCeeeeeccccCCCccee-eeecCCCCCCCCCCEEEEe
Q 010748          146 TINPNDAVIVCARN---------EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCM-AWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       146 ~~~p~~~~l~~~~~---------~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~la~g  215 (502)
                      .++|+++.|.++..         +.+    .|-+|+...     +..-+++.++.-|-.. --.+..++++|+|++|++.
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d----~V~v~D~~t-----~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~  122 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTD----YVEVIDPQT-----HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY  122 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCC----EEEEEECcc-----CcEEeEEccCCCchhhccCccceEEECCCCCEEEEe
Confidence            39999999988887         433    444444443     2334444444332200 0011123348999999988


Q ss_pred             cC--CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          216 SM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       216 ~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      ..  +..|.|.|+.+...+....+                            .+...-...++. .++  +-+.||....
T Consensus       123 n~~p~~~V~VvD~~~~kvv~ei~v----------------------------p~~~~vy~t~e~-~~~--~~~~Dg~~~~  171 (352)
T TIGR02658       123 QFSPSPAVGVVDLEGKAFVRMMDV----------------------------PDCYHIFPTAND-TFF--MHCRDGSLAK  171 (352)
T ss_pred             cCCCCCEEEEEECCCCcEEEEEeC----------------------------CCCcEEEEecCC-ccE--EEeecCceEE
Confidence            74  58999999986443332211                            011111111111 111  2233444433


Q ss_pred             EeCCC-Cee-eEe---eccCCCCeEEE-EEcC-CCCcEEEEEeCCCcEEEEecCCCCCcc-ceEe-----------ecCC
Q 010748          294 WDVAA-GKC-NLT---LEHHTDKVQAV-AWNH-HSPQILLSGSFDRSVVMKDARISTHSG-FKWA-----------VAAD  354 (502)
Q Consensus       294 wd~~~-~~~-~~~---~~~h~~~v~~l-~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~-----------~~~~  354 (502)
                      ..+.+ |+. ..+   +..-..++..- .|.+ ++ ..+.+... |+|.+.|+....... ..+.           ..+.
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g  249 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG  249 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence            32221 211 111   11100111000 3455 55 66665555 999999975543211 1111           1233


Q ss_pred             eeEEEeCCCCCCEEEEEe---------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-
Q 010748          355 VESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-  424 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-  424 (502)
                      +.-++++|+++.+++...         ..+.|.++|..+.         +.+..+.. ...+..++++|++..+|++.. 
T Consensus       250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeEEEEeCC
Confidence            455999998875555332         2247999999886         55666553 457899999999842665544 


Q ss_pred             CCCcEEEEECCCCC
Q 010748          425 TDKMVKLWDLSNNQ  438 (502)
Q Consensus       425 ~dg~i~vwd~~~~~  438 (502)
                      .++.|.++|..+.+
T Consensus       320 ~s~~VsViD~~t~k  333 (352)
T TIGR02658       320 GDKTLYIFDAETGK  333 (352)
T ss_pred             CCCcEEEEECcCCe
Confidence            68889999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.71  E-value=1.3e-06  Score=83.49  Aligned_cols=240  Identities=16%  Similarity=0.201  Sum_probs=145.1

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      .+||.|.+|++.... -|.+|.-.....+..                            ..| ..|..+.|+|. +.+|.
T Consensus        39 ~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~----------------------------~~~-~~V~~~~fSP~-~kYL~   87 (561)
T COG5354          39 SESPLGTYLFSEHAA-GVECWGGPSKAKLVR----------------------------FRH-PDVKYLDFSPN-EKYLV   87 (561)
T ss_pred             eecCcchheehhhcc-ceEEccccchhheee----------------------------eec-CCceecccCcc-cceee
Confidence            348999999998764 577998764331111                            123 45889999999 67888


Q ss_pred             EEecCC---------------cEEEEeCCCCeeeEeeccCCCC-------------------------------------
Q 010748          284 SASADK---------------QVKIWDVAAGKCNLTLEHHTDK-------------------------------------  311 (502)
Q Consensus       284 sgs~dg---------------~v~vwd~~~~~~~~~~~~h~~~-------------------------------------  311 (502)
                      +-+.-.               .+.+||+.++..+..+..-..+                                     
T Consensus        88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p  167 (561)
T COG5354          88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHP  167 (561)
T ss_pred             eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCc
Confidence            865533               4999999988777665432222                                     


Q ss_pred             --------eEEEEEcCCCC-cEEEE-----EeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe-----
Q 010748          312 --------VQAVAWNHHSP-QILLS-----GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----  372 (502)
Q Consensus       312 --------v~~l~~~~~~~-~~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----  372 (502)
                              |+...|+|.+. ..|+.     .+..+++++|.+...+......-....-..+.|++.|..+++-.-     
T Consensus       168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks  247 (561)
T COG5354         168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS  247 (561)
T ss_pred             hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence                    33334444321 11111     223445555555533333222222333345678887764433221     


Q ss_pred             -----CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEECCCCCeeEEEEec
Q 010748          373 -----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       373 -----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t-~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                           ....+++++++..          .+.......++|..++|.|.+.++.++ |-.+..+.++|++.+-   .+.+ 
T Consensus       248 nKsyfgesnLyl~~~~e~----------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl---~~~~-  313 (561)
T COG5354         248 NKSYFGESNLYLLRITER----------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL---RFYF-  313 (561)
T ss_pred             ccceeccceEEEEeeccc----------ccceeccccccceeeeecccCCceeEEecccccceeecccccce---EEec-
Confidence                 1245778887743          222222567899999999988554433 3568889999998762   2222 


Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCccccccc
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~--~dg~i~vwd~~~~~~~~~~~  489 (502)
                       ..+.=..+.|+|.++|+|.+|-  ..|.|-+|+......+...|
T Consensus       314 -Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~  357 (561)
T COG5354         314 -PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF  357 (561)
T ss_pred             -CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe
Confidence             2355567889999998666332  33789999998877665443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=2.6e-07  Score=91.34  Aligned_cols=198  Identities=18%  Similarity=0.269  Sum_probs=139.0

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe---------------eeEeeccCCCCeEEEEEcCCCCcEEEEEeC
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSF  330 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~  330 (502)
                      .....|++|+.. ..++|+|+.||.++|..+.+..               .-+++.+|+..|.-+.|+... +.|.++..
T Consensus        14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDT   91 (1189)
T ss_pred             CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCC
Confidence            356889999998 6699999999999999876431               124567999999999999988 88999999


Q ss_pred             CCcEEEEecCCCCCccc--eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCee
Q 010748          331 DRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  408 (502)
Q Consensus       331 dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~  408 (502)
                      +|.|.+|-+-.++-...  .....+-|.+++|+.+|. .+.+...||.|.+=.+...          .++...-......
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGN----------RIwgKeLkg~~l~  160 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGN----------RIWGKELKGQLLA  160 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccc----------eecchhcchhecc
Confidence            99999999876553221  223456789999999876 6888888888877666543          2222222223345


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCC-----eeEEEEe----cCCCCcEEEEEEc--------CCCCcEEEEEeCC
Q 010748          409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQ-----PSCIASR----NPKAGAVFSVAFS--------EDSPFVLAIGGSK  471 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-----~~~~~~~----~~~~~~v~~~~~s--------pd~~~ll~sg~~d  471 (502)
                      .+.|+++. ..++.+-..|.+.+||....-     ..+....    ......|..+.|.        |+.+ .|+.+-.+
T Consensus       161 hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~n  238 (1189)
T KOG2041|consen  161 HVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYAN  238 (1189)
T ss_pred             ceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcC
Confidence            78899987 677777778999999976531     1121111    1112235555553        5777 68888888


Q ss_pred             CcEEEEE
Q 010748          472 GKLEIWD  478 (502)
Q Consensus       472 g~i~vwd  478 (502)
                      |.+.|-.
T Consensus       239 Gr~QiMR  245 (1189)
T KOG2041|consen  239 GRMQIMR  245 (1189)
T ss_pred             ceehhhh
Confidence            8877654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.66  E-value=8.2e-07  Score=90.37  Aligned_cols=182  Identities=17%  Similarity=0.245  Sum_probs=138.8

Q ss_pred             CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      +..++-|+.-..+..+|+++.+..+...-..+.|+-|+.+.   +++.+|...|+|.+-|.++.+.......|.+.+..+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn---r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNN---RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecC---cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            44677888888899999999888777765555677776643   789999999999999999999888888899888776


Q ss_pred             EeCCCCCCEEEEEeC---------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          359 AWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ...  |. ++++++-         |..|++||+|+.+         .+..+.-+.++ .-+.|+|.-...++.++..|+.
T Consensus       224 Dv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr---------al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~  290 (1118)
T KOG1275|consen  224 DVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR---------ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF  290 (1118)
T ss_pred             ecc--CC-eEEEeecccccccccccchhhhhhhhhhh---------ccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence            664  44 5666543         5568999999873         33333333333 5577888777889999999999


Q ss_pred             EEEE---CCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          430 KLWD---LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       430 ~vwd---~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .+-|   +.+.. ..+.........+.++.+++++. .||.|..+|.|.+|-
T Consensus       291 q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  291 QFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeccccccCCCc-cceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence            9999   33332 23444555555699999999999 599999999999998

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=2e-07  Score=89.42  Aligned_cols=232  Identities=16%  Similarity=0.271  Sum_probs=144.7

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .+.+-+++++.|.+|++|.+.....                    ..+.......+..|+.+|.++.|..+.+ +++  |
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD--------------------~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~--S  801 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGD--------------------EIGTSACQFTYQAHKKPIHDIGFLADLR-SIA--S  801 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccC--------------------ccccceeeeEhhhccCcccceeeeeccc-eee--e
Confidence            3577899999999999999863211                    1122345567788999999999998833 454  5


Q ss_pred             cCCcEEEEeCCCCeeeEeecc--CCCCeEEEEEcCC-CCcEEEEE-eCCCcEEEEecCCCCCccceEe-----ecCCeeE
Q 010748          287 ADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH-SPQILLSG-SFDRSVVMKDARISTHSGFKWA-----VAADVES  357 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~  357 (502)
                      .||.|.+||.-.++++..+..  ..+.+..+..-+. ...++++| +...+|+++|.|...-......     ...-+.+
T Consensus       802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence            688999999988877664421  1122333333232 22445444 7889999999998765442221     2345788


Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEE-EECCC
Q 010748          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL-WDLSN  436 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v-wd~~~  436 (502)
                      ++..+.|. .++++-.+|+|.+.|.|++.         .+............++ .|.. +.|+....|.++.| |....
T Consensus       882 iaVa~~GN-~lAa~LSnGci~~LDaR~G~---------vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  882 IAVADKGN-KLAAALSNGCIAILDARNGK---------VINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             EEeccCcc-hhhHHhcCCcEEEEecCCCc---------eeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcC
Confidence            99998765 78999999999999999983         3333332222222332 2333 67777778888888 87766


Q ss_pred             CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      +.  ...+......+..-  .-.-|+. |+++.....+.||-
T Consensus       950 gi--mh~q~kpppepahf--lqsvgpS-LV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  950 GI--MHLQDKPPPEPAHF--LQSVGPS-LVTAQNGNILGVYA  986 (1034)
T ss_pred             Ce--eeeccCCCCcchhh--hhccCce-eEEeccCcEEEEEe
Confidence            54  22232222221111  1122443 66666666777774

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=1.4e-06  Score=87.77  Aligned_cols=188  Identities=18%  Similarity=0.174  Sum_probs=133.5

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      ..+.+.|++++.   .+|+-|+.+|.|++++.. +.+ .+...|+..      ...| .++++|+.||+|.|..+-+.+.
T Consensus        38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhhHHHHHHhhc---ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcc
Confidence            346788888874   489999999999999965 333 444445544      4456 8999999999999998887765


Q ss_pred             ccceEeecCCeeEEEeCCC----CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748          345 SGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~~~----~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      .. ......++.+++++|+    ....+++|+.-| +.++.-+-...       .....+....++|.++.|.   ++++
T Consensus       106 ~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~W~---g~lI  173 (846)
T KOG2066|consen  106 IT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIKWR---GNLI  173 (846)
T ss_pred             ce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEEec---CcEE
Confidence            54 5667788999999997    345799999988 77765443211       1122466678999999998   3888


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecC----CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          421 ATGSTDKMVKLWDLSNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      |=++.+| |+|||+.+.+.........    .......+.|.++.+  |+.| ..-+|+|..++
T Consensus       174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIK  233 (846)
T ss_pred             EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEe
Confidence            8888777 9999998876322222111    011234688888876  4444 45579999988

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=1.9e-08  Score=101.39  Aligned_cols=201  Identities=18%  Similarity=0.178  Sum_probs=141.2

Q ss_pred             cccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC-cEEEE
Q 010748          259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVVMK  337 (502)
Q Consensus       259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-~i~iw  337 (502)
                      ...+..|....+|++|+.. .+.|+.|+..|.|+++++.+|........|.++|+-+.-+.+|...|.+++... -..+|
T Consensus      1094 w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             chhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            3456678899999999988 679999999999999999999999999999999999999999955555555555 56789


Q ss_pred             ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE-Ee---ccCCCeeEEEEc
Q 010748          338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LH---AHDKAVCTISYN  413 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~---~h~~~v~~l~~s  413 (502)
                      ++...-.....   -..-.++.|+... ..-+.|+......+||+.+..         ++.+ +.   +.+..-++..|+
T Consensus      1173 ~~~s~~~~~Hs---f~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~---------~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1173 DASSTGGPRHS---FDEDKAVKFSNSL-QFRALGTEADDALLYDVQTCS---------PLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred             ccccccCcccc---ccccceeehhhhH-HHHHhcccccceEEEecccCc---------HHHHhcCcchhhhhhccccccC
Confidence            98763222211   2335677887753 355667666789999999973         3332 21   223334788999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          414 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       414 p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      |.. .+++   .||  .+||++..+  .+..+.... --..-.|+|.|..+++      .-.|||+++.+.++..
T Consensus      1240 P~D-~LIl---ndG--vLWDvR~~~--aIh~FD~ft-~~~~G~FHP~g~eVII------NSEIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1240 PCD-TLIL---NDG--VLWDVRIPE--AIHRFDQFT-DYGGGGFHPSGNEVII------NSEIWDMRTFKLLHSV 1299 (1516)
T ss_pred             CCc-ceEe---eCc--eeeeeccHH--HHhhhhhhe-ecccccccCCCceEEe------echhhhhHHHHHHhcC
Confidence            987 6665   355  489998875  333333222 1123469999986444      2358999998876543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.61  E-value=1.5e-08  Score=98.96  Aligned_cols=204  Identities=20%  Similarity=0.240  Sum_probs=139.9

Q ss_pred             cccceeeEEeccCC-CcEEEEEecCCcEEEEeCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEEEe----CCCcEEEE
Q 010748          265 HTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGS----FDRSVVMK  337 (502)
Q Consensus       265 h~~~V~~l~~~~~~-~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s----~dg~i~iw  337 (502)
                      ....+.|++++-+. +.+++.|.++|.|.+-.++...-  .....+|...+++++|++-..+.|++|-    .+..+.||
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            34567788776543 46899999999999988765432  2334678889999999998767777763    35679999


Q ss_pred             ecCCCCC----ccceE-eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE
Q 010748          338 DARISTH----SGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       338 d~~~~~~----~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  412 (502)
                      |+.+.-.    ...+. .......+++|..+ ..++++|.....++++|+|..          ........+..+..+..
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs----------~~~~~svnTk~vqG~tV  203 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQS----------LDSVSSVNTKYVQGITV  203 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhh----------hhhhhhhhhhhccccee
Confidence            9987521    11111 23445678999965 458999999999999999953          22222233456777888


Q ss_pred             cCCCCCEEEEEeCCCcEEEEE-CCCCCeeEEEEecC----CCCcEEEEEEcCCCCcEEEEEeCC-CcEEEEECCC
Q 010748          413 NPLVPNLLATGSTDKMVKLWD-LSNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTLS  481 (502)
Q Consensus       413 sp~~~~~l~t~s~dg~i~vwd-~~~~~~~~~~~~~~----~~~~v~~~~~spd~~~ll~sg~~d-g~i~vwd~~~  481 (502)
                      .|..++++++-. ||.|-+|| .++-+. .+.....    ....+..++|+|....++++...+ ++|+++++..
T Consensus       204 dp~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  204 DPFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cCCCCCceeccc-cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            886557887766 99999999 333221 1111111    123489999999877777777665 6899999853

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.58  E-value=6.4e-05  Score=69.52  Aligned_cols=198  Identities=12%  Similarity=0.136  Sum_probs=126.9

Q ss_pred             eEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748          271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (502)
                      ++.|.+..+.++++-...+.|..|+..+++... +... . ...+.+. +++  .|+.+... .+.++|..+++......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g--~l~v~~~~-~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDG--RLYVADSG-GIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTS--EEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCC--EEEEEEcC-ceEEEecCCCcEEEEee
Confidence            567888546677777788999999998876543 2211 2 6777777 554  45555554 45555888775443333


Q ss_pred             e-----ecCCeeEEEeCCCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          350 A-----VAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       350 ~-----~~~~v~~v~~~~~~~~~~~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      .     .....+.+++.|+|. ++++....        |.|..++.. +         . +..+...-...+.|+|+|++
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~---------~-~~~~~~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G---------K-VTVVADGLGFPNGIAFSPDG  145 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S---------E-EEEEEEEESSEEEEEEETTS
T ss_pred             ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C---------e-EEEEecCcccccceEECCcc
Confidence            2     234578899999876 55554433        557777776 3         2 22222334557899999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCC--e---eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          417 PNLLATGSTDKMVKLWDLSNNQ--P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~--~---~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..++++-+..+.|..|++....  .   .....+....+..-.+++..+|. +.++....+.|.+++.. ++.+..+
T Consensus       146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred             hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEE
Confidence            4455677788889999986432  1   12223333334588999999998 67777778899999987 6665544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=2.1e-07  Score=58.52  Aligned_cols=39  Identities=33%  Similarity=0.646  Sum_probs=36.8

Q ss_pred             CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd  338 (502)
                      ++++.++.+|...|++|+|+|++ .+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            46889999999999999999998 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=5.1e-07  Score=83.70  Aligned_cols=167  Identities=17%  Similarity=0.204  Sum_probs=116.9

Q ss_pred             EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEE
Q 010748          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~  370 (502)
                      |++.+..+.+....+.+|...|..++|+|....++..++.+..|.|.|+++....... .....+++++|+-+..+++++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAYNQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-eccCCceeeeeccCCcceeEE
Confidence            6666666666666677888999999999998558999999999999999987766643 444899999999999999999


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEE------EcCCCCCEEEEEeCCCcEEEEECCCC--Cee
Q 010748          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTIS------YNPLVPNLLATGSTDKMVKLWDLSNN--QPS  440 (502)
Q Consensus       371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~------~sp~~~~~l~t~s~dg~i~vwd~~~~--~~~  440 (502)
                      |..+|.|.+||+|...        .++..+.+  ...+|..++      ..+.+ .+|+..+.+  +..|.+...  .+.
T Consensus       254 Gl~nG~VlvyD~R~~~--------~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~p  322 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE--------GPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECLP  322 (463)
T ss_pred             eccCceEEEEEccCCC--------chHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCCC
Confidence            9999999999999873        33333322  123333332      23334 566655544  566766543  223


Q ss_pred             EEEEecCCCCcEEEEEEcCCCCcEEEEEeC
Q 010748          441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~spd~~~ll~sg~~  470 (502)
                      ++.... ..+.+.+++.++..+.+|++.-.
T Consensus       323 ~vlele-~pG~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  323 CVLELE-PPGICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             cccccC-CCcceeeeeecCccceEEEEecC
Confidence            333333 34667788888866667776544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.54  E-value=2.3e-05  Score=82.73  Aligned_cols=286  Identities=11%  Similarity=0.189  Sum_probs=157.6

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      -+.+|.++.|.-+.+-|+.+...|     .|...+.... ...+.+.    +..-..|++|       ||++..++..+.
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G-----~iilvd~et~-~~eivg~----vd~GI~aasw-------S~Dee~l~liT~  129 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALG-----DIILVDPETL-ELEIVGN----VDNGISAASW-------SPDEELLALITG  129 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCC-----cEEEEccccc-ceeeeee----ccCceEEEee-------cCCCcEEEEEeC
Confidence            347899999999999999999888     3333333322 0011111    2333367788       899999999998


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      .+++.+-.-+ .+.+....+                      ..-....+....+-|-.. .+. +.|+. |.....+..
T Consensus       130 ~~tll~mT~~-f~~i~E~~L----------------------~~d~~~~sk~v~VGwGrk-eTq-frgs~-gr~~~~~~~  183 (1265)
T KOG1920|consen  130 RQTLLFMTKD-FEPIAEKPL----------------------DADDERKSKFVNVGWGRK-ETQ-FRGSE-GRQAARQKI  183 (1265)
T ss_pred             CcEEEEEecc-ccchhcccc----------------------ccccccccccceeccccc-cee-eecch-hhhcccccc
Confidence            8888665432 111110000                      000001112223334332 111 11221 222211111


Q ss_pred             CC-eeeEeeccCCCCeEEEEEcCCCCcEEEEEe----CC-CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEE
Q 010748          298 AG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGS----FD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       298 ~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s----~d-g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~  371 (502)
                      .. +......-+. .=++++|.-+| .++++..    .+ +.|++||.. +..........+--.+++|-|.|. .+++-
T Consensus       184 ~~ek~~~~~~~~~-~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~i  259 (1265)
T KOG1920|consen  184 EKEKALEQIEQDD-HKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAI  259 (1265)
T ss_pred             cccccccchhhcc-CCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeee
Confidence            11 1111111222 23468999999 7777732    23 799999987 333332333444557899999766 44443


Q ss_pred             ---eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE---EeCCCcEEEEECCCCCeeEEEEe
Q 010748          372 ---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT---GSTDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       372 ---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t---~s~dg~i~vwd~~~~~~~~~~~~  445 (502)
                         +.++.|.+|.-.....      +.....+......|..++|+.++ .+|++   ......|++|-+.+....+...+
T Consensus       260 q~~~sd~~IvffErNGL~h------g~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l  332 (1265)
T KOG1920|consen  260 QCKTSDSDIVFFERNGLRH------GEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQEL  332 (1265)
T ss_pred             eecCCCCcEEEEecCCccc------cccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEEEEEEEE
Confidence               4566788887654321      12223333444559999999987 77777   44455599999988776544444


Q ss_pred             cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      .......  +.|+|-..+.|.+-..+|...++++
T Consensus       333 ~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  333 QFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             ecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            4332222  7788876665665556666666554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=1.1e-05  Score=82.03  Aligned_cols=192  Identities=15%  Similarity=0.172  Sum_probs=128.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc-eeeEEeccCCCcEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS-VLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s  284 (502)
                      ++++..+|.|+.+|.|.+.+-.                            ......++.+... |..|. .-++.++|++
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------~~~~~~fqa~~~siv~~L~-~~~~~~~L~s   82 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNSS----------------------------FQLIRGFQAYEQSIVQFLY-ILNKQNFLFS   82 (933)
T ss_pred             cCCCceEEEeeccccEEEeccc----------------------------ceeeehheecchhhhhHhh-cccCceEEEE
Confidence            6789999999999999887643                            1222334455555 44444 4444678888


Q ss_pred             EecCCc-----EEEEeCCCC------eee--Eeecc-----CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC--CCCC
Q 010748          285 ASADKQ-----VKIWDVAAG------KCN--LTLEH-----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTH  344 (502)
Q Consensus       285 gs~dg~-----v~vwd~~~~------~~~--~~~~~-----h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~  344 (502)
                      .+.|+.     |+||+++.-      .++  +.+..     ...++.+++.+.+- ..+++|-.+|.|..+.-.  ..+.
T Consensus        83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen   83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccc
Confidence            877754     899998632      344  12222     34678899999886 899999999999998532  2222


Q ss_pred             ccce--EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748          345 SGFK--WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       345 ~~~~--~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ....  .....+|+.+.+..++...+++++ -..|.+|.+...        ......+..|..++.|..+++..+.++++
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr--------~p~~~~ld~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR--------TPSLKVLDNNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC--------CcceeeeccCCccceeeecCCCCccEEEe
Confidence            2222  244678999999887765334433 456899998844        22345577788899999999866334444


Q ss_pred             EeCCCcEEEEECCCCC
Q 010748          423 GSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~  438 (502)
                      ++  ..+.+|+....+
T Consensus       233 ~~--e~l~fY~sd~~~  246 (933)
T KOG2114|consen  233 GS--EFLYFYDSDGRG  246 (933)
T ss_pred             cC--ceEEEEcCCCcc
Confidence            33  459999988665

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.52  E-value=0.00022  Score=70.37  Aligned_cols=113  Identities=19%  Similarity=0.270  Sum_probs=83.7

Q ss_pred             ceeeEEeccCCCcEEEEE----ecCCc----EEEEeCCCCeee----EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 010748          268 SVLGLAWNKEFRNILASA----SADKQ----VKIWDVAAGKCN----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV  335 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sg----s~dg~----v~vwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~  335 (502)
                      ...++.|+...++.+.+.    +.+|.    -++|++..++..    .++ .....|.|++++|+. ..|+.|+.||+|.
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-~kLvlGC~DgSii  284 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-DKLVLGCEDGSII  284 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-ceEEEEecCCeEE
Confidence            346777776556666654    33443    346776655422    222 367899999999999 8999999999999


Q ss_pred             EEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          336 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~  385 (502)
                      +||...+...  .....-.++.++|+|+|. ++++|+..|.+.+||+.-.
T Consensus       285 LyD~~~~~t~--~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCCeee--eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence            9999876433  334456688999999876 8999999999999998754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.52  E-value=4.8e-05  Score=69.86  Aligned_cols=183  Identities=17%  Similarity=0.155  Sum_probs=114.7

Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec----C--
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA----A--  353 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~--  353 (502)
                      ..+++++.++.|..||..+|+.+.++.. ...+...... .+ ..+++++.++.|+.+|..+++..-......    .  
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc-cccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            3677778999999999999999888764 2222111122 22 456777788899999988887644311111    0  


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe-----------eEEEEcCCCCCEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-----------CTISYNPLVPNLLAT  422 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v-----------~~l~~sp~~~~~l~t  422 (502)
                      ......+.  + ..++++..++.|..+|++++         ..++.........           ..+.+.  + ..++.
T Consensus       114 ~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~~  178 (238)
T PF13360_consen  114 SSSSPAVD--G-DRLYVGTSSGKLVALDPKTG---------KLLWKYPVGEPRGSSPISSFSDINGSPVIS--D-GRVYV  178 (238)
T ss_dssp             --SEEEEE--T-TEEEEEETCSEEEEEETTTT---------EEEEEEESSTT-SS--EEEETTEEEEEECC--T-TEEEE
T ss_pred             cccCceEe--c-CEEEEEeccCcEEEEecCCC---------cEEEEeecCCCCCCcceeeecccccceEEE--C-CEEEE
Confidence            11222222  3 36888888999999999997         6667666544221           222223  2 36777


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      ++.++.+..+|+.+++.  +....  ...+..+ ....+. .|++++.++.|..||+++++.+-
T Consensus       179 ~~~~g~~~~~d~~tg~~--~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  179 SSGDGRVVAVDLATGEK--LWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             ECCTSSEEEEETTTTEE--EEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTEEEE
T ss_pred             EcCCCeEEEEECCCCCE--EEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCCEEe
Confidence            77777544449999983  33333  2333332 345555 36656689999999999998653

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=1.4e-05  Score=81.37  Aligned_cols=199  Identities=14%  Similarity=0.133  Sum_probs=131.4

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCC-eEEEEEcCCCCcEEEEEeCCCc-----EEEEecCC
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHSPQILLSGSFDRS-----VVMKDARI  341 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~s~dg~-----i~iwd~~~  341 (502)
                      .|.|  |++. +..++.|+.+|.|.+.+ +.-+.++.|+.+... |+.+. .-++..+|++.+.|+.     |++|++..
T Consensus        27 ~isc--~~s~-~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~-~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   27 AISC--CSSS-TGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLY-ILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             ceeE--EcCC-CceEEEeeccccEEEec-ccceeeehheecchhhhhHhh-cccCceEEEEEeecCCCCceEEEEecccc
Confidence            4554  4555 45899999999998887 444555788877777 55444 4444478888877754     89999875


Q ss_pred             CCC---ccce-----Ee-----ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCee
Q 010748          342 STH---SGFK-----WA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  408 (502)
Q Consensus       342 ~~~---~~~~-----~~-----~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~  408 (502)
                      ...   +...     ..     .+.++.+++.+.+ -..+++|-.+|.|.++.-.-.+.   .  .....-......+|+
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RD---r--gsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRD---R--GSRQDYSHRGKEPIT  175 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhc---c--ccceeeeccCCCCce
Confidence            321   1111     11     2456788888876 45899999999999884322110   0  122222334467999


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ++++..++...+.+++ -..|.+|.+.... .....+..|..+++|..|++.... +++++.. .|.+|+...
T Consensus       176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~q-fIca~~e-~l~fY~sd~  244 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQ-FICAGSE-FLYFYDSDG  244 (933)
T ss_pred             eeEEecCCceeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCcc-EEEecCc-eEEEEcCCC
Confidence            9999988744333333 4569999998544 345557788889999999987764 4444443 699998764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=5.5e-06  Score=83.75  Aligned_cols=104  Identities=17%  Similarity=0.267  Sum_probs=81.8

Q ss_pred             CCCCCEEEEecCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748          206 REKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       206 s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      +|...++|+++..    |+|.||- ++++....                         .   ...-.+++|+|+|. .-+
T Consensus        24 HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-------------------------V---t~P~hatSLCWHpe-~~v   73 (1416)
T KOG3617|consen   24 HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-------------------------V---TYPVHATSLCWHPE-EFV   73 (1416)
T ss_pred             CCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-------------------------c---ccceehhhhccChH-HHH
Confidence            7888999998754    7888883 44332110                         0   11223567999999 778


Q ss_pred             EEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       282 l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      |++|-.-|.+.+|...+.+.......|..+|+.+.|+++| ..|+++..-|.|.+|...
T Consensus        74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            9999999999999988777666667899999999999999 899999999999999765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=3.1e-05  Score=78.28  Aligned_cols=181  Identities=17%  Similarity=0.190  Sum_probs=119.9

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+++|+-|+-.|.|++++.+..-                             .....|+..      .-. +.+++|||.
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s~~------~~~-Gey~asCS~   91 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHSSS------ILE-GEYVASCSD   91 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc-----------------------------ccccccccc------ccC-CceEEEecC
Confidence            48899999999999999876310                             011123333      334 569999999


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEecCCCC--CccceEeecCCeeEEEeC
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLAWD  361 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~  361 (502)
                      ||+|.|-.+-+.+...++. ...++.+++++|+    ....+++|+.-| +.++.-+--.  .........++|.++.|.
T Consensus        92 DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~  169 (846)
T KOG2066|consen   92 DGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR  169 (846)
T ss_pred             CCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence            9999999998888777775 4678999999997    236799999888 7777644222  222344567899999997


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      .   ++++-++..| |++||+.+.+......  .+. ........-..+.|.+.  ..|+.| ...+|+|..++.
T Consensus       170 g---~lIAWand~G-v~vyd~~~~~~l~~i~--~p~-~~~R~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  170 G---NLIAWANDDG-VKVYDTPTRQRLTNIP--PPS-QSVRPELFPPHLHWQDE--DRLVIG-WGDSVKICSIKK  234 (846)
T ss_pred             C---cEEEEecCCC-cEEEeccccceeeccC--CCC-CCCCcccCCCceEecCC--CeEEEe-cCCeEEEEEEec
Confidence            4   3666666555 8999998763221110  000 11111223456778874  345444 445699988873

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=1.4e-07  Score=95.34  Aligned_cols=199  Identities=17%  Similarity=0.231  Sum_probs=133.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +-+.++|++|+..|.|++|++.++....                           ....|..+|+-+.=+.+|..+|.++
T Consensus      1110 s~~~~hL~vG~~~Geik~~nv~sG~~e~---------------------------s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1110 SGGTNHLAVGSHAGEIKIFNVSSGSMEE---------------------------SVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred             ecCCceEEeeeccceEEEEEccCccccc---------------------------cccccccccccccccCCcceeeeec
Confidence            6789999999999999999998765433                           3447999999999999977666666


Q ss_pred             ecCC-cEEEEeCCC-CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE----eecCCeeEEE
Q 010748          286 SADK-QVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVESLA  359 (502)
Q Consensus       286 s~dg-~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~v~~v~  359 (502)
                      +... -..+|++.. +...++|.    .-.++.|+... ..-+.|+.-..+.+||+.+.......+    .....-+++.
T Consensus      1163 s~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             cccCchHHHhccccccCcccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence            6655 578999864 44555554    34578888765 555666666789999999987655432    2223347888


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      |+|... +++   .||  .+||+|..         ..+..+...+..+ .-.|+|+| .-++.-+     -|||+++.+ 
T Consensus      1238 FsP~D~-LIl---ndG--vLWDvR~~---------~aIh~FD~ft~~~-~G~FHP~g-~eVIINS-----EIwD~RTF~- 1294 (1516)
T KOG1832|consen 1238 FSPCDT-LIL---NDG--VLWDVRIP---------EAIHRFDQFTDYG-GGGFHPSG-NEVIINS-----EIWDMRTFK- 1294 (1516)
T ss_pred             cCCCcc-eEe---eCc--eeeeeccH---------HHHhhhhhheecc-cccccCCC-ceEEeec-----hhhhhHHHH-
Confidence            999765 343   345  47999986         4444443333222 23589998 5565544     489999876 


Q ss_pred             eEEEEecCCCCcEEEEEEcCCCC
Q 010748          440 SCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                       ++...+.-  .-..+.|+..|.
T Consensus      1295 -lLh~VP~L--dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1295 -LLHSVPSL--DQCAVTFNSTGD 1314 (1516)
T ss_pred             -HHhcCccc--cceEEEeccCcc
Confidence             23222211  123466666665

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.43  E-value=6.8e-07  Score=56.17  Aligned_cols=38  Identities=32%  Similarity=0.679  Sum_probs=35.6

Q ss_pred             ccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      +++..+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            4678899999999999999997 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.41  E-value=1.7e-05  Score=80.36  Aligned_cols=112  Identities=11%  Similarity=0.241  Sum_probs=77.1

Q ss_pred             ccccccCCCceEEEEEecCC-cceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748          143 EDMTINPNDAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~-~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      +-..|||...++++++.... .+++.||.-.....      .|-..++  ....++|       +|..-.||.|-.-|.+
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPq------r~Vt~P~--hatSLCW-------Hpe~~vLa~gwe~g~~   83 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQ------RDVTYPV--HATSLCW-------HPEEFVLAQGWEMGVS   83 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCC------cccccce--ehhhhcc-------ChHHHHHhhcccccee
Confidence            34579999999999976542 23455543222111      1111111  1234667       6778889999999999


Q ss_pred             EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      .+|...+.                           ........|+.+|..+.|+++ ++.|.++..-|.|.+|...
T Consensus        84 ~v~~~~~~---------------------------e~htv~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   84 DVQKTNTT---------------------------ETHTVVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEEecCCc---------------------------eeeeeccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence            99997642                           222233469999999999999 5699999999999999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.37  E-value=0.00012  Score=67.64  Aligned_cols=205  Identities=14%  Similarity=0.100  Sum_probs=127.5

Q ss_pred             eeeEEeccCCCcEEEEEecCCc-EEEEeCCCCeeeEeeccCCCCe--EEEEEcCCCCcEEEEEe-----CCCcEEEEecC
Q 010748          269 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDKV--QAVAWNHHSPQILLSGS-----FDRSVVMKDAR  340 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~-v~vwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~s-----~dg~i~iwd~~  340 (502)
                      ...++.+|..+..++.+-.-|+ ..+||..+++....+....+.-  -.-.|+++| ++|++.-     ..|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECc
Confidence            3467888866778888877775 6789999998887764332222  135799999 7777653     35899999998


Q ss_pred             -CCCCccceEeecCCeeEEEeCCCCCCEEEEEe------------------CCCcEEEEECCCCCCCCCCCCCccceE--
Q 010748          341 -ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL------------------EDGTIKGFDIRTAKSDPDSTSQQSSFT--  399 (502)
Q Consensus       341 -~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------------------~dg~v~i~d~~~~~~~~~~~~~~~~~~--  399 (502)
                       +...+.....+.-....+.+.|+++. |+++.                  .+.++.+.|.+++         ..+.+  
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~t-LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---------~ll~q~~  155 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGET-LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---------ALLEQVE  155 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCE-EEEEcCCCccCcccCceecChhhcCCceEEEecCCC---------ceeeeee
Confidence             33333333344445667889998864 44432                  1122334444443         22222  


Q ss_pred             E--eccCCCeeEEEEcCCCCCEEEEEeCCCc-------EEEEECCCCCeeEEEEe-----cCCCCcEEEEEEcCCCCcEE
Q 010748          400 L--HAHDKAVCTISYNPLVPNLLATGSTDKM-------VKLWDLSNNQPSCIASR-----NPKAGAVFSVAFSEDSPFVL  465 (502)
Q Consensus       400 ~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~-------i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~spd~~~ll  465 (502)
                      +  ..|.-+|..+++.++| ..++..-..|-       |-+++....  ......     ..-.+.+-+|++++++.++.
T Consensus       156 Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia  232 (305)
T PF07433_consen  156 LPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIA  232 (305)
T ss_pred             cCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence            3  3367788899998876 44443333221       333333221  111111     12346789999999999766


Q ss_pred             EEEeCCCcEEEEECCCCccccc
Q 010748          466 AIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       466 ~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +|+=.-|.+.+||..++..+..
T Consensus       233 ~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  233 VTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             EECCCCCEEEEEECCCCCEeec
Confidence            7777778999999999987754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.36  E-value=0.00016  Score=65.78  Aligned_cols=204  Identities=15%  Similarity=0.167  Sum_probs=118.5

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      +-...+.+|+|+|+.+.++++....+.|..++. +|+.++++.-. .+..-.|++..++ .++++.-.++.+.++++...
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE---
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEecc
Confidence            444569999999986778888888889988886 57888877433 3568889998777 66666656899999988443


Q ss_pred             CCc--c---ceE------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE------EeccCC
Q 010748          343 THS--G---FKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT------LHAHDK  405 (502)
Q Consensus       343 ~~~--~---~~~------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~------~~~h~~  405 (502)
                      ...  .   ...      .....+..++|+|.+.. |+++-+..-..+|.++......    ......      ......
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGF----DLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS------EEEE-HHHH-HT--SS
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCcc----ceeeccccccccccceec
Confidence            211  1   011      13356899999997664 5555666666677766421000    011111      112345


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-------CCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~v~~~~~spd~~~ll~sg~~dg~i~vw  477 (502)
                      .+++++++|..+.+++.......|..+| ..+++.....+...       ....-.|+|.++|. +++ .+.-+..++|
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYI-VSEPNLFYRF  247 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEE-EETTTEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEE-EcCCceEEEe
Confidence            6899999998767888888888999999 55665555555431       12467899999997 344 5666666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.33  E-value=3.8e-05  Score=75.56  Aligned_cols=133  Identities=16%  Similarity=0.165  Sum_probs=89.1

Q ss_pred             ecCCeeEEEeCCCCCCEEEEE----eCCCc----EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748          351 VAADVESLAWDPHAEHSFVVS----LEDGT----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~----~~dg~----v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ......++.|+...++.+.+.    +.+|.    -.+|++...+.      .....+.......|.+++++|+. ..|+.
T Consensus       204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl------qrvsvtsipL~s~v~~ca~sp~E-~kLvl  276 (545)
T PF11768_consen  204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL------QRVSVTSIPLPSQVICCARSPSE-DKLVL  276 (545)
T ss_pred             ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce------eEEEEEEEecCCcceEEecCccc-ceEEE
Confidence            344456666766555555543    22333    34566544321      11112223467889999999987 89999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      |+.||+|.+||...+.....    ...-..+.++|+|+|. ++++|+..|.+.+||+.-+..-.+.++....|
T Consensus       277 GC~DgSiiLyD~~~~~t~~~----ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P  344 (545)
T PF11768_consen  277 GCEDGSIILYDTTRGVTLLA----KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDATP  344 (545)
T ss_pred             EecCCeEEEEEcCCCeeeee----eecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCCC
Confidence            99999999999977642211    2234578899999999 68999999999999998777666666554433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.33  E-value=0.00062  Score=67.73  Aligned_cols=222  Identities=9%  Similarity=0.075  Sum_probs=126.0

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +..+++++.++.|..+|..+++.+.....-                  .......+...++.    . . + .++.++.+
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------------------~~~~~~~~~~sP~v----~-~-~-~v~~~~~~  214 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLD------------------VPSLTLRGESAPAT----A-F-G-GAIVGGDN  214 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCC------------------CCcccccCCCCCEE----E-C-C-EEEEEcCC
Confidence            556777888899999999877654432110                  00000011112221    1 1 2 46667788


Q ss_pred             CcEEEEeCCCCeeeEeeccCCC-------CeEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCccceEeec-CCeeEE
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTD-------KVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESL  358 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~-------~v~~l~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v  358 (502)
                      |.+..+|..+|+.+........       ....+..+|  .+ ..++.++.+|.+..+|..+++..   |... .....+
T Consensus       215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~---W~~~~~~~~~~  290 (394)
T PRK11138        215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIV---WKREYGSVNDF  290 (394)
T ss_pred             CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEE---EeecCCCccCc
Confidence            9999999999887665431110       001111122  13 46777788999999999887643   2211 111112


Q ss_pred             EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      ...  + ..+++++.+|.+..+|..++         ..++...... ....+..+.  + ..|+.++.+|.|.++|..++
T Consensus       291 ~~~--~-~~vy~~~~~g~l~ald~~tG---------~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG  355 (394)
T PRK11138        291 AVD--G-GRIYLVDQNDRVYALDTRGG---------VELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDG  355 (394)
T ss_pred             EEE--C-CEEEEEcCCCeEEEEECCCC---------cEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCC
Confidence            221  2 36788888999999999887         3344332111 112222222  2 67888999999999999999


Q ss_pred             CeeEEEEecCCCCcEEE-EEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          438 QPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~-~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      +.  +.........+.+ ..+ .++  .|..++.+|.|+.+++
T Consensus       356 ~~--~~~~~~~~~~~~s~P~~-~~~--~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        356 RF--VAQQKVDSSGFLSEPVV-ADD--KLLIQARDGTVYAITR  393 (394)
T ss_pred             CE--EEEEEcCCCcceeCCEE-ECC--EEEEEeCCceEEEEeC
Confidence            84  3333222222322 222 234  3667899999988764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.33  E-value=0.00051  Score=60.74  Aligned_cols=103  Identities=13%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE-EeccCCCcEEEEEec
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL-AWNKEFRNILASASA  287 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~~l~sgs~  287 (502)
                      |++++.|+..|.+++.++.++.....+.+++.                            |.+- ...++ +.++..|+.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~----------------------------vk~~a~~d~~-~glIycgsh  113 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET----------------------------VKVRAQCDFD-GGLIYCGSH  113 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhh----------------------------hccceEEcCC-CceEEEecC
Confidence            88999999999999999998876665544432                            1111 22344 449999999


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~  341 (502)
                      |++.+..|..+..++...+--.+...+=+..|.. ..|+.+...|.+.--....
T Consensus       114 d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  114 DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             CCcEEEecccccceEEecccCCceeccceecCCC-ceEEEEeccceEEEEccCC
Confidence            9999999999999988876433333333445533 3455556666665544443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.28  E-value=0.0009  Score=66.56  Aligned_cols=229  Identities=10%  Similarity=0.068  Sum_probs=133.2

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+..+++++.+|.+..+|..+++.+.....-+                       .....++    .. + + .++.++.
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-----------------------~~~ssP~----v~-~-~-~v~v~~~  168 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-----------------------EALSRPV----VS-D-G-LVLVHTS  168 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-----------------------ceecCCE----EE-C-C-EEEEECC
Confidence            36677888889999999998876554321100                       0011111    11 2 2 5667888


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEE-EEEcC--CCCcEEEEEeCCCcEEEEecCCCCCccceEeecCC--------ee
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQA-VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD--------VE  356 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~-l~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------v~  356 (502)
                      ++.|..+|..+|+.+..+......+.. ..-+|  .+ ..++.++.+|.+..+|..+++..-. .....+        ..
T Consensus       169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~~~~~~~~~~~  246 (394)
T PRK11138        169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQPTGATEIDRLV  246 (394)
T ss_pred             CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhhe-eccccCCCccchhccc
Confidence            899999999999988877532111000 00011  12 3566778889999999887664321 111000        00


Q ss_pred             EEEeCC--CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748          357 SLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       357 ~v~~~~--~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      .+..+|  .+. .+++++.+|.+..+|..++         ..++.....  ....+...  + ..|+.++.+|.+..+|.
T Consensus       247 ~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG---------~~~W~~~~~--~~~~~~~~--~-~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        247 DVDTTPVVVGG-VVYALAYNGNLVALDLRSG---------QIVWKREYG--SVNDFAVD--G-GRIYLVDQNDRVYALDT  311 (394)
T ss_pred             ccCCCcEEECC-EEEEEEcCCeEEEEECCCC---------CEEEeecCC--CccCcEEE--C-CEEEEEcCCCeEEEEEC
Confidence            111122  123 5777778999999999987         444443321  11122222  3 67778888999999999


Q ss_pred             CCCCeeEEEEecCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          435 SNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       435 ~~~~~~~~~~~~~~~-~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+++.  +....... ....+.... ++  .|+.++.+|.|.+.|..+++.+.+.
T Consensus       312 ~tG~~--~W~~~~~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        312 RGGVE--LWSQSDLLHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             CCCcE--EEcccccCCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCEEEEE
Confidence            98873  33222111 112222222 33  3667889999999999999877554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.27  E-value=0.00083  Score=62.17  Aligned_cols=226  Identities=14%  Similarity=0.076  Sum_probs=134.8

Q ss_pred             CC-CCCEEEEecCCC-cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          206 RE-KGNFMAVGSMEP-AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       206 s~-~~~~la~g~~dg-~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      +| .+..++.+-.-| ...+||..++.....+.                   ...-..|.+|.      .|+++|+ +|+
T Consensus        13 ~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-------------------a~~gRHFyGHg------~fs~dG~-~Ly   66 (305)
T PF07433_consen   13 HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-------------------APPGRHFYGHG------VFSPDGR-LLY   66 (305)
T ss_pred             CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-------------------CCCCCEEecCE------EEcCCCC-EEE
Confidence            56 566777777766 46688887765443211                   12223455773      7999955 666


Q ss_pred             EE-----ecCCcEEEEeCC-CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC------------------CCcEEEEec
Q 010748          284 SA-----SADKQVKIWDVA-AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF------------------DRSVVMKDA  339 (502)
Q Consensus       284 sg-----s~dg~v~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~------------------dg~i~iwd~  339 (502)
                      +.     +..|.|-|||.. +-+.+..+..|.-....+.+.|++ ..|+++..                  +-.+...|.
T Consensus        67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~  145 (305)
T PF07433_consen   67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA  145 (305)
T ss_pred             EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence            65     345889999998 667888888888777889999999 55555521                  123445555


Q ss_pred             CCCCCccce----EeecCCeeEEEeCCCCCCEEEEEeC-CC-------cEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748          340 RISTHSGFK----WAVAADVESLAWDPHAEHSFVVSLE-DG-------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       340 ~~~~~~~~~----~~~~~~v~~v~~~~~~~~~~~~~~~-dg-------~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      +++......    ..+...+..+++.+++.  ++.+.. .|       .|.++.........    ..+......-.+.+
T Consensus       146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~----~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  146 RSGALLEQVELPPDLHQLSIRHLAVDGDGT--VAFAMQYQGDPGDAPPLVALHRRGGALRLL----PAPEEQWRRLNGYI  219 (305)
T ss_pred             CCCceeeeeecCccccccceeeEEecCCCc--EEEEEecCCCCCccCCeEEEEcCCCcceec----cCChHHHHhhCCce
Confidence            665544321    12455788899988764  444431 11       13333322210000    00001112335789


Q ss_pred             eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC
Q 010748          408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~  470 (502)
                      -+|++++++..+.+|+=.-+.+.+||..+++......+    ..+..++..+++ | +++.+.
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f-~~ssG~  276 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----PDACGVAPTDDG-F-LVSSGQ  276 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc----CceeeeeecCCc-e-EEeCCC
Confidence            99999998844455666678899999999984322222    336667777776 3 555443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.20  E-value=0.00021  Score=71.53  Aligned_cols=142  Identities=12%  Similarity=0.189  Sum_probs=92.0

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      -|.--++.-++.+|+.|++.|     -||.|+...+....+...   . .....|+..+      |++..++|.|+..|.
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G-----~lyl~~R~~~~~~~~~~~---~-~~~~~~~~~v------s~~e~lvAagt~~g~   99 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAG-----SVYLYNRHTGEMRKLKNE---G-ATGITCVRSV------SSVEYLVAAGTASGR   99 (726)
T ss_pred             eEEEEEeecCCceEEEecccc-----eEEEEecCchhhhccccc---C-ccceEEEEEe------cchhHhhhhhcCCce
Confidence            444456677889999999888     888888766522111110   0 1122343333      678899999999999


Q ss_pred             EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-
Q 010748          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-  299 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~-  299 (502)
                      |.|+-++. ....+...                    ....-..|...|+||+|+++ ...|++|...|+|.+-.+.+. 
T Consensus       100 V~v~ql~~-~~p~~~~~--------------------~t~~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~s~~  157 (726)
T KOG3621|consen  100 VSVFQLNK-ELPRDLDY--------------------VTPCDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELDSRQ  157 (726)
T ss_pred             EEeehhhc-cCCCccee--------------------eccccccCCceEEEEEeccc-ccEEeecCCCceEEEEEechhh
Confidence            99998875 22111111                    11122248899999999999 569999999999999888772 


Q ss_pred             ---eeeEeeccCCCCeEEEEEcC
Q 010748          300 ---KCNLTLEHHTDKVQAVAWNH  319 (502)
Q Consensus       300 ---~~~~~~~~h~~~v~~l~~~~  319 (502)
                         -..+.+-...+.|-.+.+..
T Consensus       158 ~~~~~~q~il~~ds~IVQlD~~q  180 (726)
T KOG3621|consen  158 AFLSKSQEILSEDSEIVQLDYLQ  180 (726)
T ss_pred             hhccccceeeccCcceEEeeccc
Confidence               11222333456676676654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.17  E-value=0.00071  Score=66.14  Aligned_cols=269  Identities=16%  Similarity=0.211  Sum_probs=143.9

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeecc---cc------------CCCcceeeeecCCC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI---II------------PAFPLCMAWLDCPL  203 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~---~~------------~~~~~~~~~~~~~~  203 (502)
                      ...+....|+|+|+.||.....      .||+.+...+....|  -++.   +.            -.....+-|     
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~------nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~W-----  108 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDN------NLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWW-----  108 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETT------EEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-----
T ss_pred             ccccccceeecCCCeeEEEecC------ceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEE-----
Confidence            4578899999999999999754      788886544311111  1111   00            011233444     


Q ss_pred             CCCCCCCEEEEecCC-CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc--ccceeeEEeccCCCc
Q 010748          204 KDREKGNFMAVGSME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH--TDSVLGLAWNKEFRN  280 (502)
Q Consensus       204 ~~s~~~~~la~g~~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~  280 (502)
                        ||++++||....| ..|+.+.+.....                                .+  --.+..+.+-.-|..
T Consensus       109 --Spd~~~la~~~~d~~~v~~~~~~~~~~--------------------------------~~~~yp~~~~~~YPk~G~~  154 (353)
T PF00930_consen  109 --SPDSKYLAFLRFDEREVPEYPLPDYSP--------------------------------PDSQYPEVESIRYPKAGDP  154 (353)
T ss_dssp             ---TTSSEEEEEEEE-TTS-EEEEEEESS--------------------------------STESS-EEEEEE--BTTS-
T ss_pred             --CCCCCEEEEEEECCcCCceEEeeccCC--------------------------------ccccCCcccccccCCCCCc
Confidence              8999999987655 4555555421000                                00  012444444222221


Q ss_pred             EEEEEecCCcEEEEeCCCCeeeE-e-e---ccCCCCeEEEEEcCCCCcEEEEE--eCCC---cEEEEecCCCCCccceEe
Q 010748          281 ILASASADKQVKIWDVAAGKCNL-T-L---EHHTDKVQAVAWNHHSPQILLSG--SFDR---SVVMKDARISTHSGFKWA  350 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~-~-~---~~h~~~v~~l~~~~~~~~~l~s~--s~dg---~i~iwd~~~~~~~~~~~~  350 (502)
                      . .    .-.+.|+|+.+++... . .   ..-..-+..+.|.+++ ..|+..  ..+.   .+.++|..++........
T Consensus       155 n-p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e  228 (353)
T PF00930_consen  155 N-P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE  228 (353)
T ss_dssp             -------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred             C-C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence            1 1    1246778888876532 1 1   2234568899999998 523333  3332   466677776554432222


Q ss_pred             -ecCCe---eEEEeC-CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeE-EEEcCCCCCEEEEEe
Q 010748          351 -VAADV---ESLAWD-PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT-ISYNPLVPNLLATGS  424 (502)
Q Consensus       351 -~~~~v---~~v~~~-~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~t~s  424 (502)
                       ..+.|   ....|. +++..++.....+|.-++|-+...        ......+....-.|.. +.+++.+..+.+++.
T Consensus       229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~  300 (353)
T PF00930_consen  229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--------GGKPRQLTSGDWEVTSILGWDEDNNRIYFTAN  300 (353)
T ss_dssp             ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--------SSEEEESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred             cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc--------ccceeccccCceeecccceEcCCCCEEEEEec
Confidence             22222   245554 777777777778887666555443        2334455555566744 677888756666776


Q ss_pred             CCC----cEEEEECC-CCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748          425 TDK----MVKLWDLS-NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       425 ~dg----~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d  471 (502)
                      .++    .|..-++. .+.+.+   +....+.-..+.|||+++|++.+.+.-
T Consensus       301 ~~~p~~r~lY~v~~~~~~~~~~---LT~~~~~~~~~~~Spdg~y~v~~~s~~  349 (353)
T PF00930_consen  301 GDNPGERHLYRVSLDSGGEPKC---LTCEDGDHYSASFSPDGKYYVDTYSGP  349 (353)
T ss_dssp             SGGTTSBEEEEEETTETTEEEE---SSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred             CCCCCceEEEEEEeCCCCCeEe---ccCCCCCceEEEECCCCCEEEEEEcCC
Confidence            533    46666676 555333   333323227899999999877766543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.17  E-value=0.00013  Score=72.14  Aligned_cols=203  Identities=13%  Similarity=0.079  Sum_probs=121.3

Q ss_pred             cccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEE--EEec
Q 010748          265 HTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV--MKDA  339 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~--iwd~  339 (502)
                      -...+..-+|+|++..+.+..-..   ..+.++++.+++....+. ..+.-..-+|+|+|..++++...||...  ++|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            345667778999865544443222   359999999886544443 2333345679999988888888888654  5567


Q ss_pred             CCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      .+..... +....+.-..=.|+|+|..+++++...|.-.+|-....        ...+..+....+.-..-.|+|+| .+
T Consensus       270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--------g~~~~riT~~~~~~~~p~~SpdG-~~  339 (425)
T COG0823         270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE--------GSQVTRLTFSGGGNSNPVWSPDG-DK  339 (425)
T ss_pred             CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC--------CCceeEeeccCCCCcCccCCCCC-CE
Confidence            6665333 22233333466799999988888888887666654433        12334444444444477899999 55


Q ss_pred             EEEEeC-CCc--EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          420 LATGST-DKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       420 l~t~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      |+..+. .|.  |.+.++.++..   .....+......-.|.|++..++.+++.-+.=.++.+..
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~~~---~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~  401 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASGGK---IRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSL  401 (425)
T ss_pred             EEEEeccCCceeeEEeccCCCCc---EEEccccccCCCCCcCCCCceEEEeccCCCCceEEEeec
Confidence            554443 454  66666666542   112222233445678888886555555443444444433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.15  E-value=0.00032  Score=74.41  Aligned_cols=202  Identities=15%  Similarity=0.249  Sum_probs=131.2

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC----C
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR----I  341 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~----~  341 (502)
                      .+.|.++.|..+ .+-++.+...|.|.+-|..+.... ....-...|.+++|+|++ .+++..+..+++.+-.-.    .
T Consensus        68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             CcceEEEEEecc-cceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchh
Confidence            368999999998 667888899999999988776432 222346789999999999 888888888887764321    0


Q ss_pred             -----------CCCccceEe-----------------------------ecCCeeEEEeCCCCCCEEEEE-----eCCCc
Q 010748          342 -----------STHSGFKWA-----------------------------VAADVESLAWDPHAEHSFVVS-----LEDGT  376 (502)
Q Consensus       342 -----------~~~~~~~~~-----------------------------~~~~v~~v~~~~~~~~~~~~~-----~~dg~  376 (502)
                                 .+.+..-|+                             ....-++++|.-+|. +|+++     .....
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccCCcee
Confidence                       010110010                             112234589998876 56663     22368


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCe-eEEEEecCCCCcE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQP-SCIASRNPKAGAV  452 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~~-~~~~~~~~~~~~v  452 (502)
                      |++||-. +.         .-..-....+.-.+++|-|.| .++++..   .|+.|.+|.-+..+. ......+.....|
T Consensus       224 irV~drE-g~---------Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v  292 (1265)
T KOG1920|consen  224 IRVYDRE-GA---------LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV  292 (1265)
T ss_pred             EEEeccc-ch---------hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence            9999987 31         111111122334678999987 7777754   356799998655331 1233344444559


Q ss_pred             EEEEEcCCCCcEEEE---EeCCCcEEEEECCCCc
Q 010748          453 FSVAFSEDSPFVLAI---GGSKGKLEIWDTLSDA  483 (502)
Q Consensus       453 ~~~~~spd~~~ll~s---g~~dg~i~vwd~~~~~  483 (502)
                      ..++|+.++. +||+   ......|++|-+.+..
T Consensus       293 e~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  293 EELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             heeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence            9999999998 6776   4555569999887644

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.11  E-value=0.00069  Score=68.59  Aligned_cols=258  Identities=13%  Similarity=0.156  Sum_probs=135.7

Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchh------hhhhccccCCcccccccccCcccceeeEEec---cCCCcEE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN---KEFRNIL  282 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~~~~l  282 (502)
                      +.+|+..|.++|+-+.+++.+..+.++......      ..++.............-..|.-   .+++.   -+|+ +|
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp---~~s~t~g~ydGr-~~  144 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHP---HMSFTDGTYDGR-YL  144 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCC---cccccCCcccee-EE
Confidence            678899999999999999888777666543221      00000000000000000001111   11111   1333 44


Q ss_pred             EEEe-cCCcEEEEeCCCCeeeEeecc-CCCCeEEEE-------------------EcCCCCcEEEEEeCCCcEEEEecCC
Q 010748          283 ASAS-ADKQVKIWDVAAGKCNLTLEH-HTDKVQAVA-------------------WNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       283 ~sgs-~dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~-------------------~~~~~~~~l~s~s~dg~i~iwd~~~  341 (502)
                      +.-. ....|-.-++...++-..+.- ....+..++                   +.|+|..+..+.-..+.+.+.|..+
T Consensus       145 findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~et  224 (635)
T PRK02888        145 FINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAET  224 (635)
T ss_pred             EEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECcc
Confidence            4433 355566666655544332210 111222222                   2344422222333445667777765


Q ss_pred             CCCccceEeecCCeeEEEeCCCCCCEEEEEe---------------------------------------CCCcEEEEEC
Q 010748          342 STHSGFKWAVAADVESLAWDPHAEHSFVVSL---------------------------------------EDGTIKGFDI  382 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---------------------------------------~dg~v~i~d~  382 (502)
                      .+.. ......+....+.++|++...++++.                                       .++.|.++|.
T Consensus       225 meV~-~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~  303 (635)
T PRK02888        225 MEVA-WQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG  303 (635)
T ss_pred             ceEE-EEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence            4332 23334455566777777664444431                                       1234666666


Q ss_pred             CCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------eEEEEecCCCCcE
Q 010748          383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SCIASRNPKAGAV  452 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v  452 (502)
                      ++....    ....+..+. -......+.++|+|..+++++..+.+|.|.|+.+.+.          ..+.......+ .
T Consensus       304 ~t~~~~----~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-P  377 (635)
T PRK02888        304 RKAANA----GSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-P  377 (635)
T ss_pred             CccccC----CcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-c
Confidence            541000    012233333 3455688999999966666777799999999987542          11223332233 4


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ...+|.++|. .+.|---|..|..|++.+
T Consensus       378 LHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        378 LHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEECCCCC-EEEeEeecceeEEEehHH
Confidence            4678999987 688888899999999976

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.09  E-value=0.0049  Score=57.89  Aligned_cols=247  Identities=15%  Similarity=0.116  Sum_probs=136.9

Q ss_pred             CCCCCEEEEec----------CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec
Q 010748          206 REKGNFMAVGS----------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN  275 (502)
Q Consensus       206 s~~~~~la~g~----------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  275 (502)
                      +|+++.+++++          ..-.|.+||..+......+.+..+               ++..     .......++++
T Consensus        44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k---------------~R~~-----~~~~~~~~~ls  103 (342)
T PF06433_consen   44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK---------------PRAQ-----VVPYKNMFALS  103 (342)
T ss_dssp             -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS----------------B-------BS--GGGEEE-
T ss_pred             CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc---------------chhe-----ecccccceEEc
Confidence            78999888743          335799999987654443333221               0000     11123345777


Q ss_pred             cCCCcEEEEE--ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-ee-
Q 010748          276 KEFRNILASA--SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV-  351 (502)
Q Consensus       276 ~~~~~~l~sg--s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~-  351 (502)
                      .+++ +++..  +--.+|.|-|+..++.+..+.. . .+..  .-|.++.-|.+-+.||++....+.......... .. 
T Consensus       104 ~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-P-GC~~--iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F  178 (342)
T PF06433_consen  104 ADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDT-P-GCWL--IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF  178 (342)
T ss_dssp             TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEG-T-SEEE--EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred             cCCc-EEEEEccCCCCeEEEEECCCCceeeeecC-C-CEEE--EEecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence            7754 44444  3345799999999998887752 2 2222  234444568899999999999888544332111 10 


Q ss_pred             ---cCC-eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec----------cCCCeeEEEEcCCCC
Q 010748          352 ---AAD-VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVP  417 (502)
Q Consensus       352 ---~~~-v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~sp~~~  417 (502)
                         ..+ +..-++...+. .++--+-.|.|+-.|+.....       .....+..          -.+.-.-+++++.. 
T Consensus       179 ~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~-------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-  249 (342)
T PF06433_consen  179 DPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSA-------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-  249 (342)
T ss_dssp             STTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSE-------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-
T ss_pred             CCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcc-------cccCcccccCccccccCcCCcceeeeeecccc-
Confidence               111 12223333222 455567788898888876521       11122211          12344557777755 


Q ss_pred             CEEEEEe---CCC-------cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEE-EEeCCCcEEEEECCCCcccc
Q 010748          418 NLLATGS---TDK-------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLA-IGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       418 ~~l~t~s---~dg-------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~-sg~~dg~i~vwd~~~~~~~~  486 (502)
                      +.|++.-   .++       .|.+||+.+.+......+.   .++.+|+.+.+..-+|. ....++.|.|||..+++.++
T Consensus       250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            3333321   122       2778888888743333332   45779999987754554 44567899999999999887


Q ss_pred             ccc
Q 010748          487 NRF  489 (502)
Q Consensus       487 ~~~  489 (502)
                      +.-
T Consensus       327 ~~~  329 (342)
T PF06433_consen  327 SIE  329 (342)
T ss_dssp             EE-
T ss_pred             ehh
Confidence            643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.00  E-value=0.00048  Score=68.23  Aligned_cols=180  Identities=16%  Similarity=0.143  Sum_probs=112.0

Q ss_pred             cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      .+.+-|.. +.....+..-...+..-+|+|++..+....-..   ..+.++++.++.... .....+.-..-+|+|++..
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCCccCCccCCCCCCE
Confidence            34444433 444445544456677778999985544443333   348889998877654 3334555666789999998


Q ss_pred             EEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCeeEE
Q 010748          367 SFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCI  442 (502)
Q Consensus       367 ~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~--i~vwd~~~~~~~~~  442 (502)
                      ++++...+|.  |+++|+...          ....+....+.-+.-.|+|+|..++++.+..|.  |.++++...... .
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~----------~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-r  320 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGK----------NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-R  320 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCC----------cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-E
Confidence            8888888886  555666654          133344333444467899999666666666776  555566665532 2


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCcc
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAG  484 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~--i~vwd~~~~~~  484 (502)
                      .+...  +.-..-.|+|+|.+++......|.  |.+.++.++..
T Consensus       321 iT~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         321 LTFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             eeccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            22222  222277899999976655544454  77777766663

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.00  E-value=0.0014  Score=60.17  Aligned_cols=184  Identities=14%  Similarity=0.073  Sum_probs=111.0

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++.++++++.++.|..||..++..+..... .                           ..+...... . +..++.++.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~---------------------------~~~~~~~~~-~-~~~v~v~~~   84 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-P---------------------------GPISGAPVV-D-GGRVYVGTS   84 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-S---------------------------SCGGSGEEE-E-TTEEEEEET
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-c---------------------------ccccceeee-c-ccccccccc
Confidence            577788888999999999987654432211 0                           000000111 2 236677778


Q ss_pred             CCcEEEEeCCCCeeeEee-ccCC---CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCC---------
Q 010748          288 DKQVKIWDVAAGKCNLTL-EHHT---DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD---------  354 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~-~~h~---~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---------  354 (502)
                      ++.|..+|+.+|+.+..+ ....   .....+.....+ ..++++..++.|..+|+++++..-........         
T Consensus        85 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~  163 (238)
T PF13360_consen   85 DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS  163 (238)
T ss_dssp             TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred             eeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence            889999999999998884 3221   111122222224 67888888999999999988764322221111         


Q ss_pred             -e-eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          355 -V-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       355 -v-~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                       + ..+.+. . . .+++++.+|.+..+|+.++         ..++...  ...+..+ ....+ ..|+.++.++.|..|
T Consensus       164 ~~~~~~~~~-~-~-~v~~~~~~g~~~~~d~~tg---------~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  164 DINGSPVIS-D-G-RVYVSSGDGRVVAVDLATG---------EKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYAL  227 (238)
T ss_dssp             TEEEEEECC-T-T-EEEEECCTSSEEEEETTTT---------EEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEE
T ss_pred             ccccceEEE-C-C-EEEEEcCCCeEEEEECCCC---------CEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEE
Confidence             1 223333 2 3 6777777886444499987         4445433  2223331 23444 677777799999999


Q ss_pred             ECCCCC
Q 010748          433 DLSNNQ  438 (502)
Q Consensus       433 d~~~~~  438 (502)
                      |+.+++
T Consensus       228 d~~tG~  233 (238)
T PF13360_consen  228 DLKTGK  233 (238)
T ss_dssp             ETTTTE
T ss_pred             ECCCCC
Confidence            999987

...

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.98  E-value=7.1e-05  Score=74.82  Aligned_cols=138  Identities=15%  Similarity=0.205  Sum_probs=95.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +..+++++.|+.-|.+++|+-..+....                          ....+..+.+..+..++. ..++|.|
T Consensus        42 dst~~~l~~GsS~G~lyl~~R~~~~~~~--------------------------~~~~~~~~~~~~~~vs~~-e~lvAag   94 (726)
T KOG3621|consen   42 DATEEYLAMGSSAGSVYLYNRHTGEMRK--------------------------LKNEGATGITCVRSVSSV-EYLVAAG   94 (726)
T ss_pred             ecCCceEEEecccceEEEEecCchhhhc--------------------------ccccCccceEEEEEecch-hHhhhhh
Confidence            4579999999999999999976432211                          111124455666777887 6799999


Q ss_pred             ecCCcEEEEeCCCCee-----eEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC----CccceEeecCCe
Q 010748          286 SADKQVKIWDVAAGKC-----NLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFKWAVAADV  355 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~-----~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~v  355 (502)
                      +..|.|.++-++.+.+     +... +.|...|+|++|++++ ..+++|...|+|.+-.+.+..    .........+.|
T Consensus        95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I  173 (726)
T KOG3621|consen   95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI  173 (726)
T ss_pred             cCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence            9999999998876432     1112 3478899999999999 899999999999998887621    112233445667


Q ss_pred             eEEEeCCCCCCEEEEEeCC
Q 010748          356 ESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~d  374 (502)
                      ..+.+..  . ++++++.-
T Consensus       174 VQlD~~q--~-~LLVStl~  189 (726)
T KOG3621|consen  174 VQLDYLQ--S-YLLVSTLT  189 (726)
T ss_pred             EEeeccc--c-eehHhhhh
Confidence            7676654  3 44444433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.97  E-value=0.00076  Score=70.79  Aligned_cols=143  Identities=17%  Similarity=0.189  Sum_probs=98.4

Q ss_pred             CcEEEEE-ecCCcEEEEeCCCCeeeEeeccCCCC-eEEEEEcCC----CCcEEEEEeCCCcEEEEecCCCCCcc-----c
Q 010748          279 RNILASA-SADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHH----SPQILLSGSFDRSVVMKDARISTHSG-----F  347 (502)
Q Consensus       279 ~~~l~sg-s~dg~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~-----~  347 (502)
                      +++|+.- .....|+-.|++.|+.+..+..|... |..++-...    .+...+.|-.+..+..||.|......     .
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            4454443 45678999999999999999877654 555543221    12345678888999999999754211     1


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      .........|++-+.+|  .+++|+.+|.||+||-- +        ......+.+-..+|.+|..+.+| ++|++.+ +.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g--------~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~t  639 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-G--------KRAKTALPGLGDPIIGIDVTADG-KWILATC-KT  639 (794)
T ss_pred             ccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-c--------hhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cc
Confidence            12344567788777654  79999999999999943 2        24455566778999999999999 5554443 44


Q ss_pred             cEEEEEC
Q 010748          428 MVKLWDL  434 (502)
Q Consensus       428 ~i~vwd~  434 (502)
                      .|.|++.
T Consensus       640 yLlLi~t  646 (794)
T PF08553_consen  640 YLLLIDT  646 (794)
T ss_pred             eEEEEEE
Confidence            6777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.86  E-value=0.0043  Score=55.07  Aligned_cols=149  Identities=10%  Similarity=0.011  Sum_probs=96.3

Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      ..++...+++.||..+.+.--|..+|+....-. -...+.+-+.- -| .+++.|.+.|.+++.+.+++...........
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            334446789999999999999999998765432 12333332222 23 6799999999999999999865543332222


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      --......+++. ++++|+.|++.+..|.++.         .+++..+...+-..+-++.|-. ..|+.+...|.|.--.
T Consensus        95 vk~~a~~d~~~g-lIycgshd~~~yalD~~~~---------~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt  163 (354)
T KOG4649|consen   95 VKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY---------GCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVT  163 (354)
T ss_pred             hccceEEcCCCc-eEEEecCCCcEEEeccccc---------ceEEecccCCceeccceecCCC-ceEEEEeccceEEEEc
Confidence            222334455554 8999999999999999986         6677765544444444555522 4455555555554444


Q ss_pred             CCC
Q 010748          434 LSN  436 (502)
Q Consensus       434 ~~~  436 (502)
                      .+.
T Consensus       164 ~~~  166 (354)
T KOG4649|consen  164 KNP  166 (354)
T ss_pred             cCC
Confidence            433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.85  E-value=0.00047  Score=72.32  Aligned_cols=144  Identities=16%  Similarity=0.236  Sum_probs=99.0

Q ss_pred             cEEEEE-eCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC------CCEEEEEeCCCcEEEEECCCCCCCCCCCCCc
Q 010748          323 QILLSG-SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  395 (502)
Q Consensus       323 ~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~------~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~  395 (502)
                      ++|+.. .....|+-.|+..++.+. .|.....+.-..+.|+.      +...++|-.+..|..||.|-...       +
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~-eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-------k  565 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVE-EWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-------K  565 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEE-EeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-------c
Confidence            444443 356788889999888665 56555544444555531      23567788899999999997521       1


Q ss_pred             cceE---EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC
Q 010748          396 SSFT---LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       396 ~~~~---~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg  472 (502)
                      .+..   ........+|++-+.+  .+||.|+.+|.||+||--..+  ....+++-..+|.+|..+.||+|+|||+  +.
T Consensus       566 ~v~~~~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc--~t  639 (794)
T PF08553_consen  566 LVDSQSKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATC--KT  639 (794)
T ss_pred             eeeccccccccCCCceEEEecCC--ceEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEee--cc
Confidence            2211   1123445777777764  589999999999999954332  4455667789999999999999988765  45


Q ss_pred             cEEEEECC
Q 010748          473 KLEIWDTL  480 (502)
Q Consensus       473 ~i~vwd~~  480 (502)
                      .|.++++.
T Consensus       640 yLlLi~t~  647 (794)
T PF08553_consen  640 YLLLIDTL  647 (794)
T ss_pred             eEEEEEEe
Confidence            78888874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.0071  Score=59.68  Aligned_cols=212  Identities=13%  Similarity=0.110  Sum_probs=140.5

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHS  345 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~  345 (502)
                      .-..++.++.+...+++...++.|.+.|..+.+......-- .....+++.+++..+.++-.  .++++.+.|..+.+..
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            34577888886667777777799999998888777766432 26778999999954444444  3788999998887766


Q ss_pred             cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          346 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      .. .........++++|++...+++-..++.|.++|........ .   ....... -...-..+.++|++....++...
T Consensus       154 ~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         154 AT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVG-VGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             EE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccc-cCCCCceEEECCCCCEEEEEecc
Confidence            64 33332338899999988666666689999999976542100 0   0000111 12334678899998545555444


Q ss_pred             C--CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          426 D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       426 d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .  +.+...|..++............ ....+.++|+|.++.+.-+..+.+.+-|..+......
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            4  68999998887632221111222 4567899999997555445568899999888766554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.85  E-value=0.0075  Score=60.09  Aligned_cols=231  Identities=14%  Similarity=0.183  Sum_probs=111.0

Q ss_pred             cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748          189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      ...+|..+.+       +|+|+++++++ +|.-.|+......                                ....+.
T Consensus        31 ~~~~p~~ls~-------npngr~v~V~g-~geY~iyt~~~~r--------------------------------~k~~G~   70 (443)
T PF04053_consen   31 CEIYPQSLSH-------NPNGRFVLVCG-DGEYEIYTALAWR--------------------------------NKAFGS   70 (443)
T ss_dssp             -SS--SEEEE--------TTSSEEEEEE-TTEEEEEETTTTE--------------------------------EEEEEE
T ss_pred             CCcCCeeEEE-------CCCCCEEEEEc-CCEEEEEEccCCc--------------------------------ccccCc
Confidence            3444566655       79999999955 6777777732100                                012355


Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (502)
                      -..+.|.+.  +.+|+-...++|.|+.--.......++. ...+..|-.   | .+|+..+.+ .|.+||+.+++.+. .
T Consensus        71 g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~-~  141 (443)
T PF04053_consen   71 GLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIR-R  141 (443)
T ss_dssp             -SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEE-E
T ss_pred             eeEEEEecC--ccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHcceee-E
Confidence            667889884  4677777788999964223333334432 123444433   5 666666544 89999999887654 2


Q ss_pred             EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCC--CCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC
Q 010748          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK--SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      .... +|..+.|++++. +++..+ +..+.+++.....  ..........+..+......|.+..|..+   .++-.+..
T Consensus       142 i~v~-~vk~V~Ws~~g~-~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYtT~~  215 (443)
T PF04053_consen  142 IDVS-AVKYVIWSDDGE-LVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFIYTTSN  215 (443)
T ss_dssp             ESS--E-EEEEE-TTSS-EEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE-TT
T ss_pred             EecC-CCcEEEEECCCC-EEEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEEEEcCC
Confidence            2222 389999999876 555555 4456666543210  00000000133444443677888888853   34333333


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                       .++.  +..+....+..+.   .++.=+...|... .+.....++.|..+.+..
T Consensus       216 -~lkY--l~~Ge~~~i~~ld---~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  216 -HLKY--LVNGETGIIAHLD---KPLYLLGYLPKEN-RLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -EEEE--EETTEEEEEEE-S---S--EEEEEETTTT-EEEEE-TT--EEEEE--H
T ss_pred             -eEEE--EEcCCcceEEEcC---CceEEEEEEccCC-EEEEEECCCCEEEEEECH
Confidence             6666  4445433333332   4566677777555 466677888888877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.83  E-value=0.027  Score=56.44  Aligned_cols=254  Identities=14%  Similarity=0.198  Sum_probs=131.7

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC-
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP-  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg-  219 (502)
                      .+..+.++|++++||.+-..++.-...+++++...+   .+.. .....+.+ ..+.|       .++++.|+....+. 
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~-d~i~~~~~-~~~~W-------~~d~~~~~y~~~~~~  192 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLP-DGIENPKF-SSVSW-------SDDGKGFFYTRFDED  192 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEE-EEEEEEES-EEEEE-------CTTSSEEEEEECSTT
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcC-Cccccccc-ceEEE-------eCCCCEEEEEEeCcc
Confidence            345788999999999886665444567777776664   3322 11111111 22677       57777766554333 


Q ss_pred             ----------cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCC
Q 010748          220 ----------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  289 (502)
Q Consensus       220 ----------~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg  289 (502)
                                .|+.|.+.+..... ..++.                      ...+......+..+++++.+++......
T Consensus       193 ~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe----------------------~~~~~~~~~~~~~s~d~~~l~i~~~~~~  249 (414)
T PF02897_consen  193 QRTSDSGYPRQVYRHKLGTPQSED-ELVFE----------------------EPDEPFWFVSVSRSKDGRYLFISSSSGT  249 (414)
T ss_dssp             TSS-CCGCCEEEEEEETTS-GGG--EEEEC-----------------------TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred             cccccCCCCcEEEEEECCCChHhC-eeEEe----------------------ecCCCcEEEEEEecCcccEEEEEEEccc
Confidence                      36677765422110 01111                      1111122567888999665555444433


Q ss_pred             ---cEEEEeCCCC----eeeEeeccCCCCe-EEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCc---cceEeecCC-
Q 010748          290 ---QVKIWDVAAG----KCNLTLEHHTDKV-QAVAWNHHSPQILLSGS---FDRSVVMKDARISTHS---GFKWAVAAD-  354 (502)
Q Consensus       290 ---~v~vwd~~~~----~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~---~~~~~~~~~-  354 (502)
                         .|.+.++..+    .....+......+ ..+... .+ .+++...   ..+.|...++......   .....+... 
T Consensus       250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~  327 (414)
T PF02897_consen  250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV  327 (414)
T ss_dssp             SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred             cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence               4778888764    2333333333334 334443 33 4444443   2467777788776641   123334443 


Q ss_pred             -eeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeC---CC
Q 010748          355 -VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       355 -v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                       +..+..  .+..+++....++  .|+++++...         .....+... .+.|..+...+..+.+.++.+.   -+
T Consensus       328 ~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~---------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~  396 (414)
T PF02897_consen  328 SLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG---------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPP  396 (414)
T ss_dssp             EEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T---------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEE
T ss_pred             eEEEEEE--ECCEEEEEEEECCccEEEEEECCCC---------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCC
Confidence             444444  3455666666666  4788888822         233333332 3445666666666555555443   35


Q ss_pred             cEEEEECCCCCeeEE
Q 010748          428 MVKLWDLSNNQPSCI  442 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~  442 (502)
                      ++..||+.+++...+
T Consensus       397 ~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  397 TVYRYDLATGELTLL  411 (414)
T ss_dssp             EEEEEETTTTCEEEE
T ss_pred             EEEEEECCCCCEEEE
Confidence            688889998875443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.81  E-value=0.0031  Score=61.91  Aligned_cols=213  Identities=15%  Similarity=0.138  Sum_probs=117.9

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe-------------------------------------------eeEe
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGK-------------------------------------------CNLT  304 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-------------------------------------------~~~~  304 (502)
                      .|+.++|.+. ..-|+.|...|.|.||.....+                                           +...
T Consensus         3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            4888999998 4589999999999998653211                                           1111


Q ss_pred             eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE--------eecCCeeEEEeCC---C----CCCEEE
Q 010748          305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDP---H----AEHSFV  369 (502)
Q Consensus       305 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~v~~~~---~----~~~~~~  369 (502)
                      +....++|++++.+.-|  +++.|..+|.+.|.|+|.+..+....        .....++++.|..   .    ..-+++
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            22346899999998777  89999999999999999876543211        1223577777752   1    123788


Q ss_pred             EEeCCCcEEEEECCC-CCCCCCCCCCccceEEeccCCCeeEEE-EcCC--------------------CCCEEEEEeCCC
Q 010748          370 VSLEDGTIKGFDIRT-AKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPL--------------------VPNLLATGSTDK  427 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~-~sp~--------------------~~~~l~t~s~dg  427 (502)
                      +|+..|.+.+|.+.. ......   .........+.++|..+. |+.+                    .+.++++++ +.
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~---v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~  235 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFS---VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ES  235 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EE---EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SS
T ss_pred             EEeCCCCEEEEEEecCCCCceE---EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-cc
Confidence            999999999998852 110000   011111124555655554 3211                    113444444 66


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFS----EDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s----pd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .+|++...+.+...  ......-....+.+-    ..+.+.|++-..+|.|++|.+-.-+.+.+.-
T Consensus       236 ~irv~~~~~~k~~~--K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  236 DIRVFKPPKSKGAH--KSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             EEEEE-TT---EEE--EE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             ceEEEeCCCCcccc--eeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            79999998877422  222221223344453    1233468888999999999998877765543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.79  E-value=0.019  Score=58.71  Aligned_cols=233  Identities=13%  Similarity=0.124  Sum_probs=126.7

Q ss_pred             CEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccce-eeEEeccCCCcEEEEEe--
Q 010748          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV-LGLAWNKEFRNILASAS--  286 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~~l~sgs--  286 (502)
                      ..+++++.++.|.-+|..+++.+........               .       .....+ .+..+..  + +++.++  
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~---------------~-------~~~~~i~ssP~v~~--~-~v~vg~~~  165 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQ---------------V-------PPGYTMTGAPTIVK--K-LVIIGSSG  165 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCC---------------c-------CcceEecCCCEEEC--C-EEEEeccc
Confidence            6888888999999999988765443211000               0       000001 0111111  2 444443  


Q ss_pred             -------cCCcEEEEeCCCCeeeEeeccCCCC--------------------e-EEEEEcCCCCcEEEEEeCCC------
Q 010748          287 -------ADKQVKIWDVAAGKCNLTLEHHTDK--------------------V-QAVAWNHHSPQILLSGSFDR------  332 (502)
Q Consensus       287 -------~dg~v~vwd~~~~~~~~~~~~h~~~--------------------v-~~l~~~~~~~~~l~s~s~dg------  332 (502)
                             .++.|..+|..+|+.+..+......                    | .+..+.+.+ .+++.++.++      
T Consensus       166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~  244 (488)
T cd00216         166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWG  244 (488)
T ss_pred             cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccC
Confidence                   4678999999999988777532110                    1 122333334 5677776555      


Q ss_pred             ------------cEEEEecCCCCCccceEeecCCee------EEEeC----CCC--CCEEEEEeCCCcEEEEECCCCCCC
Q 010748          333 ------------SVVMKDARISTHSGFKWAVAADVE------SLAWD----PHA--EHSFVVSLEDGTIKGFDIRTAKSD  388 (502)
Q Consensus       333 ------------~i~iwd~~~~~~~~~~~~~~~~v~------~v~~~----~~~--~~~~~~~~~dg~v~i~d~~~~~~~  388 (502)
                                  .|..+|..+++..-..........      ...+.    -++  ...+++++.+|.+..+|.+++   
T Consensus       245 ~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG---  321 (488)
T cd00216         245 GRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG---  321 (488)
T ss_pred             CccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC---
Confidence                        688888887765421111111000      00110    111  125788889999999999998   


Q ss_pred             CCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE------------------eCCCcEEEEECCCCCeeEEEEecCC--
Q 010748          389 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG------------------STDKMVKLWDLSNNQPSCIASRNPK--  448 (502)
Q Consensus       389 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~------------------s~dg~i~vwd~~~~~~~~~~~~~~~--  448 (502)
                            ..++.....   ...++.+|   ..++.+                  ..+|.|.-.|+.+++.  +......  
T Consensus       322 ------~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~--~W~~~~~~~  387 (488)
T cd00216         322 ------KLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV--VWEKREGTI  387 (488)
T ss_pred             ------cEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE--eeEeeCCcc
Confidence                  555554321   11223333   222221                  2357788888888873  3333221  


Q ss_pred             C------CcEE--EEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          449 A------GAVF--SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       449 ~------~~v~--~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .      .+..  .+..  .+. +|.+++.+|.|+.+|..+++.+-+.
T Consensus       388 ~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~~  432 (488)
T cd00216         388 RDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWKF  432 (488)
T ss_pred             ccccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeEE
Confidence            0      1111  1222  334 4777889999999999999988553

The alignment model contains an 8-bladed beta-propeller.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.79  E-value=0.0026  Score=62.44  Aligned_cols=252  Identities=12%  Similarity=0.063  Sum_probs=125.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcc----------hh-----hhhhcccc-CCcccccccccCcccce
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID----------EE-----KKKKKSKK-GKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~----------~~-----~~~~~~~~-~~~~~~~~~~~~h~~~V  269 (502)
                      .+...-||+|...|.|-||.+...+............          ..     ...+.... +....+...+....++|
T Consensus        10 a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~v   89 (395)
T PF08596_consen   10 APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPV   89 (395)
T ss_dssp             ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SE
T ss_pred             cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCCcE
Confidence            4667789999999999999875433221000000000          00     00000000 01122333445568999


Q ss_pred             eeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee--cc------CCCCeEEEEEcC---CC----CcEEEEEeCCCcE
Q 010748          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EH------HTDKVQAVAWNH---HS----PQILLSGSFDRSV  334 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~--~~------h~~~v~~l~~~~---~~----~~~l~s~s~dg~i  334 (502)
                      ++++.+.- + ++|.|..+|.+.|.|++....+..-  ..      ....|+++.|.-   .+    .-.|++|+..|.+
T Consensus        90 tal~~S~i-G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v  167 (395)
T PF08596_consen   90 TALKNSDI-G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNV  167 (395)
T ss_dssp             EEEEE-BT-S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEE
T ss_pred             eEEecCCC-c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCE
Confidence            99999866 4 9999999999999999887766542  22      345788888861   11    1578899999999


Q ss_pred             EEEecCCC--C-CccceE----eecCCeeEEE-eCCCCC-------------------CEEEEEeCCCcEEEEECCCCCC
Q 010748          335 VMKDARIS--T-HSGFKW----AVAADVESLA-WDPHAE-------------------HSFVVSLEDGTIKGFDIRTAKS  387 (502)
Q Consensus       335 ~iwd~~~~--~-~~~~~~----~~~~~v~~v~-~~~~~~-------------------~~~~~~~~dg~v~i~d~~~~~~  387 (502)
                      .+|.+--.  . ......    .+.+.+..+. ++.+..                   .-+++......++++...+.  
T Consensus       168 ~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~--  245 (395)
T PF08596_consen  168 LTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS--  245 (395)
T ss_dssp             EEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----
T ss_pred             EEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC--
Confidence            99987521  1 111111    2234444443 322110                   12444455778999988765  


Q ss_pred             CCCCCCCccceEEeccCCCeeEEEEcC----CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC--CCCcEEEEEEcCCC
Q 010748          388 DPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDS  461 (502)
Q Consensus       388 ~~~~~~~~~~~~~~~h~~~v~~l~~sp----~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~spd~  461 (502)
                             +.............++.+-+    .+...|++-..+|.|++|.+...+......+..  ....+....++++|
T Consensus       246 -------k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  246 -------KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             --------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             -------cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence                   33332222222233344421    123788888999999999999887544444321  12234466778898


Q ss_pred             CcEEEEEe
Q 010748          462 PFVLAIGG  469 (502)
Q Consensus       462 ~~ll~sg~  469 (502)
                      .. ++-.|
T Consensus       319 di-~~~~g  325 (395)
T PF08596_consen  319 DI-FYWTG  325 (395)
T ss_dssp             -E-EEE-S
T ss_pred             CE-EEEeC
Confidence            84 54433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.78  E-value=0.012  Score=55.26  Aligned_cols=239  Identities=17%  Similarity=0.162  Sum_probs=129.4

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ..++.|++|+.+| |.++++.....  +                     ..     ..+...|..|...+..+ .|++- 
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~--~---------------------~~-----i~~~~~I~ql~vl~~~~-~llvL-   53 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSK--P---------------------TR-----ILKLSSITQLSVLPELN-LLLVL-   53 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcc--c---------------------ee-----EeecceEEEEEEecccC-EEEEE-
Confidence            3589999999988 88998821110  0                     00     01233399999999844 44443 


Q ss_pred             cCCcEEEEeCCCCeeeEee--------------ccCCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEecCCCC----Ccc
Q 010748          287 ADKQVKIWDVAAGKCNLTL--------------EHHTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARIST----HSG  346 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~--------------~~h~~~v~~l~--~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~  346 (502)
                      .|+.|.++++..-......              ......+...+  -...+ ...++....+.|.+|......    ...
T Consensus        54 sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~  132 (275)
T PF00780_consen   54 SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLL  132 (275)
T ss_pred             cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCccccccee
Confidence            3599999998755433311              11233444444  12333 344445555689998887642    222


Q ss_pred             ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCcc---ceEEeccCCCeeEEEEcCCCCCEEEEE
Q 010748          347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ........+.+++|.+   +.+++|..++ ..+.|+.++....-......   .........++..+.... + .+|++.
T Consensus       133 ke~~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-e~Ll~~  206 (275)
T PF00780_consen  133 KEISLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N-EFLLCY  206 (275)
T ss_pred             EEEEcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c-eEEEEe
Confidence            3456678899999984   3577776544 77888886532110000000   000111223444444443 3 455542


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                        +..-.+.|... ++.....+.- ...+.++++.  .+|+++. +. +.|.||++.+++.++..-.+
T Consensus       207 --~~~g~fv~~~G-~~~r~~~i~W-~~~p~~~~~~--~pyli~~-~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  207 --DNIGVFVNKNG-EPSRKSTIQW-SSAPQSVAYS--SPYLIAF-SS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             --cceEEEEcCCC-CcCcccEEEc-CCchhEEEEE--CCEEEEE-CC-CEEEEEECcCCcEEEEEECC
Confidence              33344445433 3222112221 2345566663  4565553 33 56999999999888766544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.78  E-value=0.00099  Score=51.54  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=72.0

Q ss_pred             eeeEEe---ccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748          269 VLGLAW---NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       269 V~~l~~---~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      |++|++   ..++.+.|+.||.|..|++|+-  ...+..+. ..+.|++|+-...+  .|+.+..+|+|-+|+-...   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~R---   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQR---   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcce---
Confidence            445554   4566789999999999999983  45667776 46788888877764  7999999999999976321   


Q ss_pred             cceEeecCCeeEEEeC---CCCCCEEEEEeCCCcEE
Q 010748          346 GFKWAVAADVESLAWD---PHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~---~~~~~~~~~~~~dg~v~  378 (502)
                      .........+.++.+.   .++..-+++|-.+|.|-
T Consensus        74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            1222334456666543   34445799999999874

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.75  E-value=0.034  Score=52.37  Aligned_cols=252  Identities=15%  Similarity=0.153  Sum_probs=129.8

Q ss_pred             cccccccCCCceEEEEEecC--Cc---ceeEEEEEecCCCCCCCeeeeeccccCCCcceee-eecCCCCCCCCCCEEEEe
Q 010748          142 LEDMTINPNDAVIVCARNED--DV---SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMA-WLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~--~~---~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~la~g  215 (502)
                      .-.+.++|+++.+.++.+--  ..   .+=-|-+|+..     .|....++.+|..|-... -.....+.+.+++++++.
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-----TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~  112 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-----TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ  112 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-----TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-----cCcccceEecCCcchheecccccceEEccCCcEEEEE
Confidence            34567899999988764210  00   00022334433     555666677776422111 011112335667766665


Q ss_pred             cCC--CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          216 SME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       216 ~~d--g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      ...  .+|.|-|+...+-+...                               ..--|.-..|.+..-+.+-|.||++.-
T Consensus       113 N~TPa~SVtVVDl~~~kvv~ei-------------------------------~~PGC~~iyP~~~~~F~~lC~DGsl~~  161 (342)
T PF06433_consen  113 NFTPATSVTVVDLAAKKVVGEI-------------------------------DTPGCWLIYPSGNRGFSMLCGDGSLLT  161 (342)
T ss_dssp             EESSSEEEEEEETTTTEEEEEE-------------------------------EGTSEEEEEEEETTEEEEEETTSCEEE
T ss_pred             ccCCCCeEEEEECCCCceeeee-------------------------------cCCCEEEEEecCCCceEEEecCCceEE
Confidence            444  35666666532111110                               111122223444446888899999999


Q ss_pred             EeCC-CCeeeEee----ccCCCCeE-EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEee-----------cCCe
Q 010748          294 WDVA-AGKCNLTL----EHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAV-----------AADV  355 (502)
Q Consensus       294 wd~~-~~~~~~~~----~~h~~~v~-~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~-----------~~~v  355 (502)
                      ..+. .|+...+.    .....++. .-.+...+ ..++-.+..|.|+-.|+....... ..+..           ++.-
T Consensus       162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~  240 (342)
T PF06433_consen  162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW  240 (342)
T ss_dssp             EEETSTSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred             EEECCCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence            8887 55544222    11122222 22333444 345557899999999888765321 11111           2334


Q ss_pred             eEEEeCCCCCCEEEEEe-------CCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE-eC
Q 010748          356 ESLAWDPHAEHSFVVSL-------EDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-ST  425 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~-------~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~-s~  425 (502)
                      .-+++++..+.+++.-.       .++  .|-+||+.+.         +.+.++.. ..++.+|..+.+..-+|++. ..
T Consensus       241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~  310 (342)
T PF06433_consen  241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAG  310 (342)
T ss_dssp             S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEEETT
T ss_pred             eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEEcCC
Confidence            55777765443333221       112  3667777775         66666653 24578999998765566554 45


Q ss_pred             CCcEEEEECCCCCee
Q 010748          426 DKMVKLWDLSNNQPS  440 (502)
Q Consensus       426 dg~i~vwd~~~~~~~  440 (502)
                      ++.+.+||..+++..
T Consensus       311 ~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  311 DGTLDVYDAATGKLV  325 (342)
T ss_dssp             TTEEEEEETTT--EE
T ss_pred             CCeEEEEeCcCCcEE
Confidence            789999999999843

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.74  E-value=0.013  Score=57.35  Aligned_cols=90  Identities=16%  Similarity=0.121  Sum_probs=57.9

Q ss_pred             ceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC----cEEEEEEc--------------
Q 010748          397 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG----AVFSVAFS--------------  458 (502)
Q Consensus       397 ~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~v~~~~~s--------------  458 (502)
                      .+.+......+.+++.+|.+ .+.|+...=|.|.++|+..+...  ...++...    .+....-.              
T Consensus       300 r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv--rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~  376 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV--RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS  376 (415)
T ss_pred             EEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh--hhhccCccceEEEEEeecccccccccccccCCCC
Confidence            34455556778999999997 88888777799999999887532  22222111    11110000              


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          459 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       459 pd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ....+|++-+-..|.|.||.++++..+...-
T Consensus       377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             cceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence            0123455667788999999999999886543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.73  E-value=0.019  Score=57.11  Aligned_cols=174  Identities=11%  Similarity=0.144  Sum_probs=88.4

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee-------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe-
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-  338 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd-  338 (502)
                      +.|.++.|+.+ . .|+.-..||+++++|+. |+....+       .-....+....+...| -.++  ..++.+.+.. 
T Consensus        81 ~~iv~~~wt~~-e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvL--t~~~~~~~v~n  154 (410)
T PF04841_consen   81 GRIVGMGWTDD-E-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG-IVVL--TGNNRFYVVNN  154 (410)
T ss_pred             CCEEEEEECCC-C-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC-EEEE--CCCCeEEEEeC
Confidence            78999999886 4 56677899999999986 3331111       1111222222333345 2333  3344444432 


Q ss_pred             cCCCCCccceEeecCCee---------E-EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCee
Q 010748          339 ARISTHSGFKWAVAADVE---------S-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  408 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~---------~-v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~  408 (502)
                      ...+..............         . ..++.+.. ..+....++.+.+.+-...            ..+ ...+++.
T Consensus       155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~------------~~i-~~~~~i~  220 (410)
T PF04841_consen  155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSF------------KQI-DSDGPII  220 (410)
T ss_pred             ccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccc------------ccc-cCCCCeE
Confidence            221111110001111011         0 12222222 3333334445554333211            011 1246899


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC
Q 010748          409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                      .+++||++ ++||.-..+|.+.+.+..-.+..+..... .......|.|+-+..
T Consensus       221 ~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  221 KIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDA  272 (410)
T ss_pred             EEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCc
Confidence            99999998 89999999999999876555533333322 234556677766543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.71  E-value=5.9e-05  Score=65.47  Aligned_cols=147  Identities=15%  Similarity=0.122  Sum_probs=84.4

Q ss_pred             cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec
Q 010748          323 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       323 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                      ..+..-+.+|.|+-++++..+........   +.+..-.+.....+++|+.+|.|++|......        ...-....
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~---~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g--------~~~d~~~s   99 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKESCRSERF---IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEG--------AHSDRVCS   99 (238)
T ss_pred             hhhccccCCcccccchhhhhhhhhhhhhh---hhcceeecccCceEEeecccceEEEecCCccc--------hHHHhhhc
Confidence            34566677899998888865443222111   11111112223369999999999999887331        11111112


Q ss_pred             cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC-CcEEEEEEcCCCCcEEEEE--eCCCcEEEEEC
Q 010748          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIG--GSKGKLEIWDT  479 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~ll~sg--~~dg~i~vwd~  479 (502)
                      ....|.++.-.-....+.++++.+|.|+.|++.-.+.  +-....|. .++..+..+..+.+ |+.+  |.+..++.|++
T Consensus       100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~~-i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDEF-LKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ccccceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCce-EEeeccccchhhhhcch
Confidence            2233333322222225899999999999999988773  33344444 44544555555553 6656  67777777777


Q ss_pred             CCCc
Q 010748          480 LSDA  483 (502)
Q Consensus       480 ~~~~  483 (502)
                      ....
T Consensus       177 e~~~  180 (238)
T KOG2444|consen  177 EKIK  180 (238)
T ss_pred             hhhh
Confidence            5543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.70  E-value=0.012  Score=58.58  Aligned_cols=180  Identities=12%  Similarity=0.091  Sum_probs=93.6

Q ss_pred             cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---ecCCe-----eEEEeC
Q 010748          290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADV-----ESLAWD  361 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v-----~~v~~~  361 (502)
                      .|+||+. .|+.+.++.--.+.+.++.|+.+.  .|++...||.+++||+....  .....   ....|     ....+.
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccC
Confidence            4999985 577777775445899999998865  57778899999999997443  11111   11112     112222


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCC-CCC-CCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSD-PDS-TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~-~~~-~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      . ++  +++-+.++.+.+..--..... ... ...........+........++.+. ...+....++.+.+.+-...+ 
T Consensus       137 ~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~-  211 (410)
T PF04841_consen  137 K-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFK-  211 (410)
T ss_pred             C-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccccc-
Confidence            2 22  444445555554432221100 000 0000000011111110012233333 344444444555544332211 


Q ss_pred             eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                          ... ..+++..|++||++++ ||.-..+|.+.|....-.+.+
T Consensus       212 ----~i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  212 ----QID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             ----ccc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECccccee
Confidence                111 2468999999999995 888888999988876444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.70  E-value=0.013  Score=56.44  Aligned_cols=182  Identities=11%  Similarity=0.070  Sum_probs=107.1

Q ss_pred             CcEEEEEec----------CCcEEEEeCCCC----eeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          279 RNILASASA----------DKQVKIWDVAAG----KCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       279 ~~~l~sgs~----------dg~v~vwd~~~~----~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      ..+|+.|..          .|.|.++++...    ..+..+  ....++|++++-. .+ . |+++. .+.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCc
Confidence            457777754          288999999884    122211  2357889999876 33 4 44333 589999999988


Q ss_pred             CCccceE--eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE--eccCCCeeEEEEcCCCCC
Q 010748          343 THSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       343 ~~~~~~~--~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~  418 (502)
                      +......  .....+.++....   +++++|..-..+.++..+..        ...+..+  ......++++.|-+++ .
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~--------~~~l~~va~d~~~~~v~~~~~l~d~-~  185 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEE--------NNKLILVARDYQPRWVTAAEFLVDE-D  185 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEEEEEEETT--------TE-EEEEEEESS-BEEEEEEEE-SS-S
T ss_pred             ccchhhheecceEEEEEEeccc---cEEEEEEcccCEEEEEEEcc--------CCEEEEEEecCCCccEEEEEEecCC-c
Confidence            7222222  2334566666653   38999988888888755542        1222222  2345668888898776 6


Q ss_pred             EEEEEeCCCcEEEEECCCC---------CeeEEEEecCCCCcEEEE---EEcCC--CCc-----EEEEEeCCCcEEEE
Q 010748          419 LLATGSTDKMVKLWDLSNN---------QPSCIASRNPKAGAVFSV---AFSED--SPF-----VLAIGGSKGKLEIW  477 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~---------~~~~~~~~~~~~~~v~~~---~~spd--~~~-----ll~sg~~dg~i~vw  477 (502)
                      .++.+..+|.+.++.....         +......+. ....|+++   ++.|.  +..     .++.++.+|.|.+.
T Consensus       186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            9999999999999987631         222223332 23557777   55552  221     36677889988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.0026  Score=62.02  Aligned_cols=145  Identities=18%  Similarity=0.258  Sum_probs=101.0

Q ss_pred             cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC------EEEEEeCCCcEEEEECCCCCCCCCCCCCcc
Q 010748          323 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQS  396 (502)
Q Consensus       323 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~------~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~  396 (502)
                      -+|.++..-..|+-.|+..++.+. .|.....|+-+.+.|+...      .-++|-.+..|.-||.|-...       ..
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVe-EWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~k  418 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVE-EWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NK  418 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeee-EeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------ce
Confidence            345556666778888888887665 6777777888888886431      345677889999999995421       12


Q ss_pred             ceEEeccC----CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC
Q 010748          397 SFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       397 ~~~~~~h~----~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg  472 (502)
                      +....+|.    ....|++-..  ..++|+||.+|.||+||--..+  ....+++...+|..+..+.+|.++|+|+  +.
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc--~t  492 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRR--AKTALPGLGDAIKHVDVTADGKWILATC--KT  492 (644)
T ss_pred             eeeeeccccccccccceeeecC--CceEEEeecCCcEEeehhhhhh--hhhcccccCCceeeEEeeccCcEEEEec--cc
Confidence            22223332    2345555444  4699999999999999974333  3455677788999999999999877654  55


Q ss_pred             cEEEEECCC
Q 010748          473 KLEIWDTLS  481 (502)
Q Consensus       473 ~i~vwd~~~  481 (502)
                      .+.+-++.-
T Consensus       493 yLlLi~t~~  501 (644)
T KOG2395|consen  493 YLLLIDTLI  501 (644)
T ss_pred             EEEEEEEec
Confidence            777777643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.65  E-value=0.011  Score=59.05  Aligned_cols=216  Identities=18%  Similarity=0.218  Sum_probs=106.8

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      ...+.++|+|+++++++ ++     +..+|.....     ....    .+......|       .+ .+.+|+-...+.|
T Consensus        35 p~~ls~npngr~v~V~g-~g-----eY~iyt~~~~-----r~k~----~G~g~~~vw-------~~-~n~yAv~~~~~~I   91 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCG-DG-----EYEIYTALAW-----RNKA----FGSGLSFVW-------SS-RNRYAVLESSSTI   91 (443)
T ss_dssp             -SEEEE-TTSSEEEEEE-TT-----EEEEEETTTT-----EEEE----EEE-SEEEE--------T-SSEEEEE-TTS-E
T ss_pred             CeeEEECCCCCEEEEEc-CC-----EEEEEEccCC-----cccc----cCceeEEEE-------ec-CccEEEEECCCeE
Confidence            57899999999999943 44     4444442221     1111    111245566       34 4446666668899


Q ss_pred             EEe-eCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748          222 EIW-DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       222 ~iw-dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~  300 (502)
                      .|+ ++.... .                       +  ....   ...+..|-.    +.+|+..+. +.|.+||+.+++
T Consensus        92 ~I~kn~~~~~-~-----------------------k--~i~~---~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~  137 (443)
T PF04053_consen   92 KIYKNFKNEV-V-----------------------K--SIKL---PFSVEKIFG----GNLLGVKSS-DFICFYDWETGK  137 (443)
T ss_dssp             EEEETTEE-T-T---------------------------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--
T ss_pred             EEEEcCcccc-c-----------------------e--EEcC---CcccceEEc----CcEEEEECC-CCEEEEEhhHcc
Confidence            996 332100 0                       0  0011   112333322    346655554 489999999999


Q ss_pred             eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-----------CCccceEeecCCeeEEEeCCCCCCEEE
Q 010748          301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-----------THSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       301 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-----------~~~~~~~~~~~~v~~v~~~~~~~~~~~  369 (502)
                      .++.+...  +|..+.|++++ .+++..+. ..+.+++....           ............|.+.+|..+   .|+
T Consensus       138 ~i~~i~v~--~vk~V~Ws~~g-~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fi  210 (443)
T PF04053_consen  138 LIRRIDVS--AVKYVIWSDDG-ELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFI  210 (443)
T ss_dssp             EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEE
T ss_pred             eeeEEecC--CCcEEEEECCC-CEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEE
Confidence            99999733  48999999998 66666654 46666664432           011222233678999999864   455


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      -.+.. .|+.  +..+          ....+..-..++.=+.+.|.. +.++....++.|..+.+.
T Consensus       211 YtT~~-~lkY--l~~G----------e~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  211 YTTSN-HLKY--LVNG----------ETGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EE-TT-EEEE--EETT----------EEEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--
T ss_pred             EEcCC-eEEE--EEcC----------CcceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEEC
Confidence            44444 6666  3333          223333334566666777754 677777778777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.65  E-value=0.035  Score=55.65  Aligned_cols=241  Identities=14%  Similarity=0.159  Sum_probs=126.9

Q ss_pred             CCCCCEEEEe-cCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748          206 REKGNFMAVG-SME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       206 s~~~~~la~g-~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      ||+|++||.+ +..    ..|+|+|+.++..+...                          +  ....-..+.|.+++..
T Consensus       132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--------------------------i--~~~~~~~~~W~~d~~~  183 (414)
T PF02897_consen  132 SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--------------------------I--ENPKFSSVSWSDDGKG  183 (414)
T ss_dssp             TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--------------------------E--EEEESEEEEECTTSSE
T ss_pred             CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--------------------------c--cccccceEEEeCCCCE
Confidence            8999999875 233    35999999875322110                          0  0111223899999665


Q ss_pred             EEEEEecC----------CcEEEEeCCCCee--eEeeccCCCC--eEEEEEcCCCCcEEEEEeCCC---cEEEEecCCC-
Q 010748          281 ILASASAD----------KQVKIWDVAAGKC--NLTLEHHTDK--VQAVAWNHHSPQILLSGSFDR---SVVMKDARIS-  342 (502)
Q Consensus       281 ~l~sgs~d----------g~v~vwd~~~~~~--~~~~~~h~~~--v~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~-  342 (502)
                      ++++....          ..|+.|.+.+...  ...+......  ...+..++++..+++......   .+.+.++... 
T Consensus       184 ~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  184 FFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG  263 (414)
T ss_dssp             EEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred             EEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence            66665333          2378888877643  2344333322  567889999844444444433   4777777764 


Q ss_pred             --C-CccceEeecCCeeE-EEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccceEEeccCC--CeeEEEEc
Q 010748          343 --T-HSGFKWAVAADVES-LAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYN  413 (502)
Q Consensus       343 --~-~~~~~~~~~~~v~~-v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s  413 (502)
                        . ...........+.. +...  +..+++...   ..+.|...++.....      ......+..|..  .+..+...
T Consensus       264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~------~~~~~~l~~~~~~~~l~~~~~~  335 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP------AEWWTVLIPEDEDVSLEDVSLF  335 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG------GGEEEEEE--SSSEEEEEEEEE
T ss_pred             CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc------ccceeEEcCCCCceeEEEEEEE
Confidence              1 22222222333333 3333  333444332   345677777776521      011224555555  35555544


Q ss_pred             CCCCCEEEEEeCCCc--EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCccc
Q 010748          414 PLVPNLLATGSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDAGI  485 (502)
Q Consensus       414 p~~~~~l~t~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d---g~i~vwd~~~~~~~  485 (502)
                        +..+++....++.  |+++++..+......... ..+.|..+...+++..++++.++-   +++..||+.+++..
T Consensus       336 --~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  336 --KDYLVLSYRENGSSRLRVYDLDDGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             --TTEEEEEEEETTEEEEEEEETT-TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             --CCEEEEEEEECCccEEEEEECCCCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence              3356666665554  888999833322233333 346677777777766555544432   57888999888753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.64  E-value=0.016  Score=52.95  Aligned_cols=202  Identities=15%  Similarity=0.273  Sum_probs=106.3

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCC--cceeeeecCCCCCCCCCCEEEEecC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ++++.++|.|+.+.|++...+..    .|+.++...    .+...  +.+..+  +=.+++       -.++.++++--.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~----~i~els~~G----~vlr~--i~l~g~~D~EgI~y-------~g~~~~vl~~Er   84 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPG----EIYELSLDG----KVLRR--IPLDGFGDYEGITY-------LGNGRYVLSEER   84 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTT----EEEEEETT------EEEE--EE-SS-SSEEEEEE--------STTEEEEEETT
T ss_pred             CCccccEEcCCCCeEEEEECCCC----EEEEEcCCC----CEEEE--EeCCCCCCceeEEE-------ECCCEEEEEEcC
Confidence            45999999999887777765542    677777653    22221  112221  123444       245666666666


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccc-cccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKY-KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      ++.+.++.+..........                 ....... ....+...+-.|+|.+.+. .|+.+-...-..||.+
T Consensus        85 ~~~L~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~  146 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRA-----------------DVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEV  146 (248)
T ss_dssp             TTEEEEEEE----TT--EE-----------------EEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEE
T ss_pred             CCcEEEEEEeccccccchh-----------------hceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEE
Confidence            8999999885322111100                 0001111 1124566799999999844 5556666666667766


Q ss_pred             CC---CeeeE--e------eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec----------CCe
Q 010748          297 AA---GKCNL--T------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA----------ADV  355 (502)
Q Consensus       297 ~~---~~~~~--~------~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~~v  355 (502)
                      ..   ...+.  .      .......+.++.++|..+++++.+..+..|..+|.. ++... .....          .+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~-~~~L~~g~~gl~~~~~Qp  224 (248)
T PF06977_consen  147 NGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVS-SLSLDRGFHGLSKDIPQP  224 (248)
T ss_dssp             ESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEE-EEE-STTGGG-SS---SE
T ss_pred             ccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEE-EEEeCCcccCcccccCCc
Confidence            53   11111  1      112345688999999988889999999999999943 33322 22211          358


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEE
Q 010748          356 ESLAWDPHAEHSFVVSLEDGTIKGF  380 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~v~i~  380 (502)
                      ..|+|.++|.  +++.++-+..++|
T Consensus       225 EGIa~d~~G~--LYIvsEpNlfy~f  247 (248)
T PF06977_consen  225 EGIAFDPDGN--LYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEE-TT----EEEEETTTEEEEE
T ss_pred             cEEEECCCCC--EEEEcCCceEEEe
Confidence            8999999763  6666676665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00027  Score=69.98  Aligned_cols=94  Identities=16%  Similarity=0.320  Sum_probs=80.5

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeE-EEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      ...|.-+.|+|. ..++|.+..+|.|.+..++ .+.+.++.-|...++ +++|.|+| ++|++|-.||+|++.|+.++..
T Consensus        20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCc
Confidence            356888999999 7799999999999999988 777888887787887 99999998 9999999999999999998876


Q ss_pred             ccc-eEeecCCeeEEEeCC
Q 010748          345 SGF-KWAVAADVESLAWDP  362 (502)
Q Consensus       345 ~~~-~~~~~~~v~~v~~~~  362 (502)
                      ... .......|.++-|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            542 345667788888875

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.62  E-value=0.075  Score=56.09  Aligned_cols=300  Identities=14%  Similarity=0.161  Sum_probs=159.9

Q ss_pred             CCccccccccccCCC---c---eEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010748          137 EDSEDLEDMTINPND---A---VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~---~---~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  210 (502)
                      +-+.+|.|+.|+|.|   +   ++++|...+.   ..+-.+ ....   .+..|.....+.+|-.+-...+    -.+..
T Consensus       528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~---~~~l~~-~pd~---~~~~~~~l~~~~iPRSIl~~~~----e~d~~  596 (1096)
T KOG1897|consen  528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDI---SMILTF-LPDL---ILITHEQLSGEIIPRSILLTTF----EGDIH  596 (1096)
T ss_pred             eecceeEEEecccCCCCCCcceEEEEEeecce---EEEEEE-CCCc---ceeeeeccCCCccchheeeEEe----eccce
Confidence            346789999999863   2   7888888762   122222 2222   5556666777777766544322    34588


Q ss_pred             EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~  290 (502)
                      +|.++..||.+.-|.++........                     ..+..  -.+.++.--.|+...++.++++| |.-
T Consensus       597 yLlvalgdG~l~~fv~d~~tg~lsd---------------------~Kk~~--lGt~P~~Lr~f~sk~~t~vfa~s-drP  652 (1096)
T KOG1897|consen  597 YLLVALGDGALLYFVLDINTGQLSD---------------------RKKVT--LGTQPISLRTFSSKSRTAVFALS-DRP  652 (1096)
T ss_pred             EEEEEcCCceEEEEEEEcccceEcc---------------------ccccc--cCCCCcEEEEEeeCCceEEEEeC-CCC
Confidence            9999999999998887654332210                     00001  12345555566665555555544 445


Q ss_pred             EEEEeCCCCeeeEe-eccCCCCeEE-EEEcC-CCCcEEEEEeCCCcEEEEecCCCCC-ccceEeecCCeeEEEeCCCCCC
Q 010748          291 VKIWDVAAGKCNLT-LEHHTDKVQA-VAWNH-HSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       291 v~vwd~~~~~~~~~-~~~h~~~v~~-l~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      ..+|.- +++.+.+ +..  ..+.. +.|+. ..+..|+++ ..+.+++.-+..-+. .............+++.+.. .
T Consensus       653 ~viY~~-n~kLv~spls~--kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s-l  727 (1096)
T KOG1897|consen  653 TVIYSS-NGKLVYSPLSL--KEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS-L  727 (1096)
T ss_pred             EEEEec-CCcEEEeccch--HHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccc-e
Confidence            555553 3333222 110  11111 12322 222334444 345666665543222 12234455667777887732 2


Q ss_pred             EEEEEeCC-----------C---cEEEEECCCCCCCCCCCCCccceEEeccC-------CCeeEEEEcCCCCCEEEEEeC
Q 010748          367 SFVVSLED-----------G---TIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       367 ~~~~~~~d-----------g---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ++.+.+.-           .   .++++|-.+.            ..+..|.       -.|.++.|..+...+++.|+.
T Consensus       728 ~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf------------~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~  795 (1096)
T KOG1897|consen  728 TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF------------EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG  795 (1096)
T ss_pred             EEEEEecccccchhhcCCcceEEEEEEecCCce------------eEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence            34433321           1   2445554432            2333332       235556687774477777753


Q ss_pred             ----------CCcEEEEECCC-CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748          426 ----------DKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       426 ----------dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                                .|.|.||.+.. ++...+... .-.+.+.++..- +|+ +||  +-+..|++|+..+.+.++....++.
T Consensus       796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~f-ngk-llA--~In~~vrLye~t~~~eLr~e~~~~~  869 (1096)
T KOG1897|consen  796 LVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVEF-NGK-LLA--GINQSVRLYEWTTERELRIECNISN  869 (1096)
T ss_pred             eeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhhh-CCe-EEE--ecCcEEEEEEccccceehhhhcccC
Confidence                      47788888777 333333332 234566666543 344 455  4556899999999877765555443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.62  E-value=0.071  Score=51.27  Aligned_cols=178  Identities=17%  Similarity=0.178  Sum_probs=89.7

Q ss_pred             cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC---CC-cEEEEecCCCCCccceE-ee--cCCeeEEEeCC
Q 010748          290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DR-SVVMKDARISTHSGFKW-AV--AADVESLAWDP  362 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg-~i~iwd~~~~~~~~~~~-~~--~~~v~~v~~~~  362 (502)
                      .|.--|+.+|+....+. -+..+..+.|+|..+.+|+-|-.   +. .-+||-+++........ .+  ...+..=-|.|
T Consensus       169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~  247 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP  247 (386)
T ss_dssp             EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred             eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence            45566777776544444 46678889999999776666533   23 24677666433221111 11  12234446899


Q ss_pred             CCCCEEEEEeC----CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC-----------
Q 010748          363 HAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-----------  427 (502)
Q Consensus       363 ~~~~~~~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg-----------  427 (502)
                      +|..+++.+..    +..|.-+|+.+..         ... +. .......+-.++++ .+++-=+.|.           
T Consensus       248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~---------~~~-~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~  315 (386)
T PF14583_consen  248 DGSTIWYDSYTPGGQDFWIAGYDPDTGE---------RRR-LM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYK  315 (386)
T ss_dssp             TSS-EEEEEEETTT--EEEEEE-TTT-----------EEE-EE-EE-SEEEEEE-TTS-SEEEEEE--------------
T ss_pred             CCCEEEEEeecCCCCceEEEeeCCCCCC---------ceE-EE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccce
Confidence            99877776542    2346677777652         111 11 11234455566776 6665544432           


Q ss_pred             -----cEEEEECCCCCeeEEEEe-------cCCCC-cEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          428 -----MVKLWDLSNNQPSCIASR-------NPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       428 -----~i~vwd~~~~~~~~~~~~-------~~~~~-~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                           .|+++++..++...+...       .++.. .=....|+||++++|.++...|...||=+.
T Consensus       316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence                 466788877664333222       11111 124678999999999999999988887553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.021  Score=56.37  Aligned_cols=208  Identities=18%  Similarity=0.168  Sum_probs=135.0

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      ....+...+.+....++-.....+...+............-...-..+..++.+.+.+++...++.|.+.|..+.+... 
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~-  110 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG-  110 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-
Confidence            4556677777544444444444566666552222222221114456788888886677777778999999977665544 


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ..........++++|++..+.++-.  .++.+.+.|..+.         ........-..+ ..++++|++...+++-..
T Consensus       111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~  180 (381)
T COG3391         111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSD  180 (381)
T ss_pred             EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---------eEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence            3334447788999998875555555  3688999888876         444444443344 899999999556666668


Q ss_pred             CCcEEEEECCCCCeeEEEE---ecCCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCccccc
Q 010748          426 DKMVKLWDLSNNQPSCIAS---RNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAGISN  487 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~spd~~~ll~sg~~d--g~i~vwd~~~~~~~~~  487 (502)
                      ++.|.+.|........ ..   .......-..+.++|++.++.++-..+  +.+.+.|..++.....
T Consensus       181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            8999999977765221 11   111223346789999999766655554  6899999988777655

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.61  E-value=0.025  Score=55.33  Aligned_cols=200  Identities=17%  Similarity=0.227  Sum_probs=105.4

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee-cc-------C---------CCCeEEEEEcCCCCcEEEEE
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EH-------H---------TDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~-------h---------~~~v~~l~~~~~~~~~l~s~  328 (502)
                      ...+....|+|+ ++.+|-.. ++.|.++++.++...+.- .+       -         -+.-..+.|+|++ +.|+..
T Consensus        42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEE
T ss_pred             ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEE
Confidence            567889999999 45666554 578999998877543321 12       0         1223578899999 555544


Q ss_pred             eC-CCc-----------------------------------EEEEecCCCCCccceEe-----ecCCeeEEEeCCCCCCE
Q 010748          329 SF-DRS-----------------------------------VVMKDARISTHSGFKWA-----VAADVESLAWDPHAEHS  367 (502)
Q Consensus       329 s~-dg~-----------------------------------i~iwd~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~~  367 (502)
                      .. +..                                   +.++++.+++.......     ...-+..+.|.+++..+
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred             EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence            33 322                                   23344444332211111     12236788898876523


Q ss_pred             EEE-EeCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCe---eEEEEc-CCCCCEEEEEeCCCcEE--EEECCCC
Q 010748          368 FVV-SLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYN-PLVPNLLATGSTDKMVK--LWDLSNN  437 (502)
Q Consensus       368 ~~~-~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~s-p~~~~~l~t~s~dg~i~--vwd~~~~  437 (502)
                      ++. ...+.   .+.++|..++..       ..+. .....+.|   ..+.|. +++..+|.....+|.-+  +++...+
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~tg~~-------~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~  270 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDASTGET-------RVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG  270 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEECTTTC-------EEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred             EEEEcccCCCEEEEEEEECCCCce-------eEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence            332 23332   366667766521       2222 22233333   345554 66667777777887644  4555555


Q ss_pred             CeeEEEEecCCCCcEEE-EEEcCCCCcEEEEEeCCC--cEEEEEC
Q 010748          438 QPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKG--KLEIWDT  479 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~-~~~spd~~~ll~sg~~dg--~i~vwd~  479 (502)
                      .   ...+....-.|.. +.|++++..++.++..++  .-.||.+
T Consensus       271 ~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  271 K---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             E---EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             c---eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence            4   3344444555744 778898887777776633  3444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.60  E-value=0.012  Score=56.68  Aligned_cols=161  Identities=11%  Similarity=0.054  Sum_probs=90.4

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe-eeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~  341 (502)
                      ...++|++|+-..  + .|+.|. .+.|.+|++...+ ....-. .....++++...  + +++++|..-..+.++..+.
T Consensus        86 ~~~g~V~ai~~~~--~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   86 EVKGPVTAICSFN--G-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EESS-EEEEEEET--T-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEET
T ss_pred             eecCcceEhhhhC--C-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEc
Confidence            3568899998763  3 344443 3789999998777 333222 123366777665  3 6899999999999886654


Q ss_pred             CCC-ccceEe--ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-cCCCeeEE---EEcC
Q 010748          342 STH-SGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTI---SYNP  414 (502)
Q Consensus       342 ~~~-~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l---~~sp  414 (502)
                      ... ......  ....++++.+-+++. .++++..+|.+.++...................... ....|+++   ++.|
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP  237 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence            222 111111  244578888886664 899999999999998864211111100011112222 23557777   5555


Q ss_pred             --CCCC-----EEEEEeCCCcEEEE
Q 010748          415 --LVPN-----LLATGSTDKMVKLW  432 (502)
Q Consensus       415 --~~~~-----~l~t~s~dg~i~vw  432 (502)
                        .+..     .++.++.+|.|.+.
T Consensus       238 ~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  238 RSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCCcccccceEEEEecCCEEEEE
Confidence              2212     47778888888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.60  E-value=0.0045  Score=62.88  Aligned_cols=159  Identities=10%  Similarity=0.034  Sum_probs=97.9

Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe------------------------
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------------------------  329 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s------------------------  329 (502)
                      +.|+|..+..+.-..+.+.+.|..+.+...++.- .+....+.++|++ .++++.+                        
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            3445332222333345667777777666655542 2233455666666 3443333                        


Q ss_pred             ----------------CCCcEEEEecCC----CCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 010748          330 ----------------FDRSVVMKDARI----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  389 (502)
Q Consensus       330 ----------------~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~  389 (502)
                                      .++.|.+.|.++    ................+.++|++..+++++..+..|.++|+.+.....
T Consensus       278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence                            134588888877    333444566778889999999999888888889999999998863210


Q ss_pred             CC--CC-CccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          390 DS--TS-QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       390 ~~--~~-~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      ..  .. ...+...... ..-...+|.++| +...|...|..|..|++..
T Consensus       358 ~~~~~~~~~vvaevevG-lGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPELG-LGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeeccC-CCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence            00  00 0112222222 233456788887 7888888899999999876

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.11  Score=49.31  Aligned_cols=227  Identities=10%  Similarity=0.019  Sum_probs=122.4

Q ss_pred             CCCCC-EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      .++.+ ++.+--..+.|.-|+..++...                            .+ .+...+.++.....++ .|++
T Consensus        33 ~~~~~~L~w~DI~~~~i~r~~~~~g~~~----------------------------~~-~~p~~~~~~~~~d~~g-~Lv~   82 (307)
T COG3386          33 DPDRGALLWVDILGGRIHRLDPETGKKR----------------------------VF-PSPGGFSSGALIDAGG-RLIA   82 (307)
T ss_pred             cCCCCEEEEEeCCCCeEEEecCCcCceE----------------------------EE-ECCCCcccceeecCCC-eEEE
Confidence            45544 5566666788888887632110                            00 1233345555444434 4544


Q ss_pred             EecCCcEEEEeCCCCeeeEeec----c-CCCCeEEEEEcCCCCcEEEEEeC------C---CcEEEEecC-CCCCccceE
Q 010748          285 ASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNHHSPQILLSGSF------D---RSVVMKDAR-ISTHSGFKW  349 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~----~-h~~~v~~l~~~~~~~~~l~s~s~------d---g~i~iwd~~-~~~~~~~~~  349 (502)
                      +..  -+.++++.++..+..+.    + -....+.+...|+| .+.++...      .   ..-.+|-+. .+.......
T Consensus        83 ~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~  159 (307)
T COG3386          83 CEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD  159 (307)
T ss_pred             Ecc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec
Confidence            433  36777776665533321    1 11345567788888 44333222      0   111344443 223222222


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC-c
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-M  428 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg-~  428 (502)
                      .+-...+.++|+|++..++++=+..+.|+-|++.........  ......+....+..-.++...+| ++-+++...| .
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~--~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~  236 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG--RRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGR  236 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC--cceEEEccCCCCCCCceEEeCCC-CEEEecccCCce
Confidence            334456789999998866666666788988888631110000  11122233345666777788777 5554444444 8


Q ss_pred             EEEEECCCCCeeEEEEecCCCCcEEEEEEc-CCCCcEEEEEeCC
Q 010748          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK  471 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~ll~sg~~d  471 (502)
                      |.+|+.. +++  +.........+++++|- |+.+.|++|+...
T Consensus       237 v~~~~pd-G~l--~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         237 VVRFNPD-GKL--LGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EEEECCC-CcE--EEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            9999988 664  33333344667888884 5566567766655

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.42  E-value=0.00032  Score=61.06  Aligned_cols=107  Identities=12%  Similarity=0.091  Sum_probs=71.0

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      -+.-|++|+.+|.|.+|+.+....+...                          ...-...|.++--+-+.+.+.++++.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--------------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~  122 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--------------------------VCSGEESIDLGIPNGRDSSLGCVGAQ  122 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHh--------------------------hhcccccceeccccccccceeEEecc
Confidence            3778999999999999998732221111                          11122334443333333458999999


Q ss_pred             CCcEEEEeCCCCeeeEeeccCC-CCeEEEEEcCCCCcEEEEE--eCCCcEEEEecCC
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSG--SFDRSVVMKDARI  341 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~--s~dg~i~iwd~~~  341 (502)
                      ||.|+.|++.-++.+.....|+ .++..+.....+ .++..+  |.+..++.|++..
T Consensus       123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence            9999999999999888887787 555555555544 556666  6677777777654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0048  Score=65.10  Aligned_cols=102  Identities=18%  Similarity=0.253  Sum_probs=74.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+-++++|+..|.+-..|+...  +.+                        .+.-..-..+|++++|+.+ +.+++.|-.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~------------------------~~~ne~v~~~Vtsvafn~d-g~~l~~G~~  150 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGP------------------------LHQNERVQGPVTSVAFNQD-GSLLLAGLG  150 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cch------------------------hhcCCccCCcceeeEecCC-CceeccccC
Confidence            3667899999999988887532  111                        0111134579999999999 569999999


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEE---EEcCCCCcEEEEEeCCCcEEEEec
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAV---AWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l---~~~~~~~~~l~s~s~dg~i~iwd~  339 (502)
                      +|.|.+||+.+++..+.+..|..+++++   .|..++ ..++++...|.  +|.+
T Consensus       151 ~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  151 DGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence            9999999999999998887776665554   444555 57888887776  5554

>smart00320 WD40 WD40 repeats

Probab=97.36  E-value=0.00064  Score=41.31  Aligned_cols=39  Identities=33%  Similarity=0.382  Sum_probs=34.4

Q ss_pred             CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd  338 (502)
                      +++...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            45667777889999999999988 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.0069  Score=59.16  Aligned_cols=141  Identities=17%  Similarity=0.175  Sum_probs=97.6

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCC------cEEEEEeCCCcEEEEecCCCCCccceE-----
Q 010748          281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGFKW-----  349 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~------~~l~s~s~dg~i~iwd~~~~~~~~~~~-----  349 (502)
                      +|.++..-..|+-.|++.|+.+.....|.. |.-+.+.|+..      ..-+.|-.+..|.-||.|-...-...+     
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            455566667789999999999999987766 77777777641      123456778899999999654421111     


Q ss_pred             -eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          350 -AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       350 -~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                       .......|.+-..+  .++++|+.+|.|++||-- +        ......+++-..+|..|..+.+| .+|++.+ +..
T Consensus       427 y~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdri-~--------~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~ty  493 (644)
T KOG2395|consen  427 YSTKNNFSCFATTES--GYIVVGSLKGDIRLYDRI-G--------RRAKTALPGLGDAIKHVDVTADG-KWILATC-KTY  493 (644)
T ss_pred             cccccccceeeecCC--ceEEEeecCCcEEeehhh-h--------hhhhhcccccCCceeeEEeeccC-cEEEEec-ccE
Confidence             22334556555543  479999999999999973 3        24556677888999999999998 4444333 456


Q ss_pred             EEEEECC
Q 010748          429 VKLWDLS  435 (502)
Q Consensus       429 i~vwd~~  435 (502)
                      +.+-++.
T Consensus       494 LlLi~t~  500 (644)
T KOG2395|consen  494 LLLIDTL  500 (644)
T ss_pred             EEEEEEe
Confidence            6666653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.25  E-value=0.024  Score=58.78  Aligned_cols=194  Identities=16%  Similarity=0.224  Sum_probs=102.0

Q ss_pred             eeeEEeccCCCcEEEEEecC------CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCCc-----EE
Q 010748          269 VLGLAWNKEFRNILASASAD------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----VV  335 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~d------g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~-----i~  335 (502)
                      -.+++...+  .+.++|+.+      .++..||..+.+-..  .+.......   ....-++.+.++|+.||.     +-
T Consensus       325 ~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~---~v~~l~g~iYavGG~dg~~~l~svE  399 (571)
T KOG4441|consen  325 RVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF---GVAVLDGKLYAVGGFDGEKSLNSVE  399 (571)
T ss_pred             cccEEEECC--EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc---eeEEECCEEEEEeccccccccccEE
Confidence            444555543  588889888      357788887765322  222111111   111122378889998874     56


Q ss_pred             EEecCCCCCccc--eEeecCCeeEEEeCCCCCCEEEEEeCCC------cEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748          336 MKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       336 iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~~~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      .||.++.+-...  ..........+.+   ++.+.++|+.++      ++..||..+..       ...+..+.......
T Consensus       400 ~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~  469 (571)
T KOG4441|consen  400 CYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGF  469 (571)
T ss_pred             EecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccc
Confidence            677665432110  1111111222222   344677776444      47788887652       12222222222222


Q ss_pred             eEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-----cEEEE
Q 010748          408 CTISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIW  477 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg-----~i~vw  477 (502)
                      ....++   ..+.+.||.|+.     |..||..+.+...+.........+..+.+  ++. +.++||.+|     +|..|
T Consensus       470 g~a~~~---~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~y  543 (571)
T KOG4441|consen  470 GVAVLN---GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECY  543 (571)
T ss_pred             eEEEEC---CEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEc
Confidence            222222   377888887763     77899998886555433333333332332  233 788899886     46777


Q ss_pred             ECCCCc
Q 010748          478 DTLSDA  483 (502)
Q Consensus       478 d~~~~~  483 (502)
                      |..+++
T Consensus       544 dp~~d~  549 (571)
T KOG4441|consen  544 DPETDT  549 (571)
T ss_pred             CCCCCc
Confidence            766543

>PHA02713 hypothetical protein; Provisional

Probab=97.16  E-value=0.026  Score=58.66  Aligned_cols=186  Identities=5%  Similarity=0.034  Sum_probs=92.7

Q ss_pred             CcEEEEEecC------CcEEEEeCCCCeee--EeeccCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEecCCCCCc
Q 010748          279 RNILASASAD------KQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHS  345 (502)
Q Consensus       279 ~~~l~sgs~d------g~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~  345 (502)
                      +.+++.|+.+      ..+..||+.+..-.  ..+.........+..  ++ .+.+.|+.++     ++..||..+..-.
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DD-TIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CC-EEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            4577777753      34778888776432  122111111222222  34 6777787764     4778887754211


Q ss_pred             c--ceEeecCCeeEEEeCCCCCCEEEEEeCCC-----------------------cEEEEECCCCCCCCCCCCCccceEE
Q 010748          346 G--FKWAVAADVESLAWDPHAEHSFVVSLEDG-----------------------TIKGFDIRTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       346 ~--~~~~~~~~v~~v~~~~~~~~~~~~~~~dg-----------------------~v~i~d~~~~~~~~~~~~~~~~~~~  400 (502)
                      .  ...........+..   ++.++++|+.++                       .+..||..+..       ...+..+
T Consensus       381 ~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m  450 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNF  450 (557)
T ss_pred             ECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-------EeecCCC
Confidence            0  00000111112222   234666666542                       46777776541       1111111


Q ss_pred             eccCCCeeEEEEcCCCCCEEEEEeCC------CcEEEEECCC-CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-
Q 010748          401 HAHDKAVCTISYNPLVPNLLATGSTD------KMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-  472 (502)
Q Consensus       401 ~~h~~~v~~l~~sp~~~~~l~t~s~d------g~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg-  472 (502)
                      .........+.+.  + .+.+.|+.+      ..+..||..+ .+...+............+.+  ++. +.++||.+| 
T Consensus       451 ~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~  524 (557)
T PHA02713        451 WTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-IMMLHCYESY  524 (557)
T ss_pred             CcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-EEEEeeecce
Confidence            1111111122222  3 666667654      2467899988 665555444433333333333  444 789999888 


Q ss_pred             -cEEEEECCCCc
Q 010748          473 -KLEIWDTLSDA  483 (502)
Q Consensus       473 -~i~vwd~~~~~  483 (502)
                       .+..||..+++
T Consensus       525 ~~~e~yd~~~~~  536 (557)
T PHA02713        525 MLQDTFNVYTYE  536 (557)
T ss_pred             eehhhcCccccc
Confidence             77888887654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.08  E-value=0.21  Score=45.80  Aligned_cols=165  Identities=19%  Similarity=0.218  Sum_probs=108.7

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      +-...|.+|.|+|+ .+.|++......-.||=...|+.++++.- .-...-.+.|...+ ++.++--.++.+.++.+...
T Consensus        83 g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          83 GETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCC
Confidence            44455999999999 45666666667777776678998888742 12334567787777 77777777888888877654


Q ss_pred             CCccc----eE-----ee-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-------CC
Q 010748          343 THSGF----KW-----AV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DK  405 (502)
Q Consensus       343 ~~~~~----~~-----~~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-------~~  405 (502)
                      .....    ..     .. ......++|.|... .|++.-+-.-+.||.+......      ..+.....+       -.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~------l~~~~~~~~~~~~~~f~~  233 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSS------LSVHASLDPTADRDLFVL  233 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcc------cccccccCcccccceEee
Confidence            32110    11     11 45688999999766 5666767777777776643210      011111111       23


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      .|+++.|++..+.+|+-+..++.+.-.|....
T Consensus       234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            57889999877678888888888888887654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0032  Score=62.66  Aligned_cols=80  Identities=20%  Similarity=0.269  Sum_probs=67.9

Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE-EEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       404 ~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      ...+..+.|+|.- .++|++..+|.|-+..+. .+  .+.+++-+.-.++ +++|.|||. +||.|-.||+|++-|+.++
T Consensus        20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~q--Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQ--RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             ccceEEEEEcCcc-chhheeccCCcEEEEEec-cc--eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCC
Confidence            4567889999987 899999999999999888 33  4777775666666 999999999 7999999999999999999


Q ss_pred             cccccc
Q 010748          483 AGISNR  488 (502)
Q Consensus       483 ~~~~~~  488 (502)
                      ..+...
T Consensus        95 ~~l~~~  100 (665)
T KOG4640|consen   95 GRLVSF  100 (665)
T ss_pred             Cceecc
Confidence            888663

>smart00320 WD40 WD40 repeats

Probab=97.04  E-value=0.0016  Score=39.41  Aligned_cols=38  Identities=34%  Similarity=0.575  Sum_probs=33.3

Q ss_pred             ccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            4556677889999999999987 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.04  E-value=0.043  Score=42.59  Aligned_cols=103  Identities=24%  Similarity=0.278  Sum_probs=68.6

Q ss_pred             eeEEE---eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748          355 VESLA---WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       355 v~~v~---~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      |++++   |..++.+.|++|+.|..|++|+-.           ..+..+.. ...|++++-...  ..++.+..+|+|-+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----------e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGv   67 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----------EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGV   67 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----------cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEE
Confidence            44454   445666889999999999999865           34555553 455777766653  67999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEEEc---CCCCcEEEEEeCCCcEEE
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~ll~sg~~dg~i~v  476 (502)
                      |+-...    +...... ..++++.+.   .+|..-|++|-++|.|-+
T Consensus        68 Y~~~~R----lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   68 YDRSQR----LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EeCcce----eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            986432    3333322 235555543   344435888989998753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.97  E-value=0.11  Score=53.23  Aligned_cols=191  Identities=15%  Similarity=0.201  Sum_probs=109.3

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEeeccCCC------CeE--EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748          281 ILASASADKQVKIWDVAAGKCNLTLEHHTD------KVQ--AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~------~v~--~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      .++.++.++.|.-.|..+|+.+.++.....      .+.  .+... ++ ..++.++.++.|..+|.++++..-. ....
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~-~~~~  139 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWK-FGNN  139 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeee-ecCC
Confidence            677788889999999999988877653322      010  11111 21 4677888999999999998765321 1111


Q ss_pred             CC------ee-EEEeCCCCCCEEEEEe---------CCCcEEEEECCCCCCCCCCCCCccceEEeccCC-----------
Q 010748          353 AD------VE-SLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-----------  405 (502)
Q Consensus       353 ~~------v~-~v~~~~~~~~~~~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-----------  405 (502)
                      ..      +. +..+.  + .++++++         .+|.|..+|..++         +.++.......           
T Consensus       140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG---------~~~W~~~~~~~~~~~~~~~~~~  207 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETG---------KLLWRFYTTEPDPNAFPTWGPD  207 (488)
T ss_pred             CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCC---------ceeeEeeccCCCcCCCCCCCCC
Confidence            11      11 11111  1 2455554         3678999999887         44444432110           


Q ss_pred             ---------Ce-eEEEEcCCCCCEEEEEeCCC------------------cEEEEECCCCCeeEEEEecCCCCc----EE
Q 010748          406 ---------AV-CTISYNPLVPNLLATGSTDK------------------MVKLWDLSNNQPSCIASRNPKAGA----VF  453 (502)
Q Consensus       406 ---------~v-~~l~~sp~~~~~l~t~s~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~----v~  453 (502)
                               .+ .+.++.+.+ .+++.++.++                  .|.-+|+.+++..=.+....+...    ..
T Consensus       208 ~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s  286 (488)
T cd00216         208 RQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPN  286 (488)
T ss_pred             cceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCC
Confidence                     01 123444444 6677776665                  688899999884322222222110    00


Q ss_pred             EEEEc----CCC--CcEEEEEeCCCcEEEEECCCCccccc
Q 010748          454 SVAFS----EDS--PFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       454 ~~~~s----pd~--~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ...+.    -++  ..++++++.+|.+...|..+++.+-+
T Consensus       287 ~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         287 QPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             CCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            00111    122  12477788899999999999998754

The alignment model contains an 8-bladed beta-propeller.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.91  E-value=0.14  Score=49.75  Aligned_cols=185  Identities=14%  Similarity=0.084  Sum_probs=84.1

Q ss_pred             cCCCcEEEEEec------CCcEEEEeCCCCeeeEeeccC---CCCeEEEEEcCCCCcEEEEEeC----------------
Q 010748          276 KEFRNILASASA------DKQVKIWDVAAGKCNLTLEHH---TDKVQAVAWNHHSPQILLSGSF----------------  330 (502)
Q Consensus       276 ~~~~~~l~sgs~------dg~v~vwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~s~----------------  330 (502)
                      |+ +.+++|+-.      -|-+.+.|-++..........   ...-..+.|.|.. ++++|+..                
T Consensus       139 p~-G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  139 PD-GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHH
T ss_pred             CC-ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhh
Confidence            45 447776522      246888888877777666432   2344667788877 77877754                


Q ss_pred             ----CCcEEEEecCCCCCccceEeec---CCeeEEEe--CCCCCCEEEEEeCCCcEEEEEC-CCCCCCCCCCCCccceEE
Q 010748          331 ----DRSVVMKDARISTHSGFKWAVA---ADVESLAW--DPHAEHSFVVSLEDGTIKGFDI-RTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       331 ----dg~i~iwd~~~~~~~~~~~~~~---~~v~~v~~--~~~~~~~~~~~~~dg~v~i~d~-~~~~~~~~~~~~~~~~~~  400 (502)
                          ..++.+||+.+.+..+. ....   .-+..+.|  .|....-|+.+.-.++|..|-- ..+.  ..   .+.+..+
T Consensus       217 ~~~yG~~l~vWD~~~r~~~Q~-idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~---a~kVi~i  290 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKLLQT-IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WA---AEKVIDI  290 (461)
T ss_dssp             HH-S--EEEEEETTTTEEEEE-EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EE---EEEEEEE
T ss_pred             cccccCeEEEEECCCCcEeeE-EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--ee---eeEEEEC
Confidence                35799999998876653 3222   22445555  4544444555445555555433 2221  00   0112222


Q ss_pred             ec-----------------cCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEECCCC-CeeEEEEec--C------------
Q 010748          401 HA-----------------HDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSNN-QPSCIASRN--P------------  447 (502)
Q Consensus       401 ~~-----------------h~~~v~~l~~sp~~~~~l~t-~s~dg~i~vwd~~~~-~~~~~~~~~--~------------  447 (502)
                      ..                 -..-|+.|.+|.+. ++|.. +=..|.|+.||+... +|.++.+..  +            
T Consensus       291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g  369 (461)
T PF05694_consen  291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG  369 (461)
T ss_dssp             --EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS--
T ss_pred             CCcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc
Confidence            11                 13558999999998 55554 445999999999874 333333221  1            


Q ss_pred             --CCCcEEEEEEcCCCCcEEEEEe
Q 010748          448 --KAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       448 --~~~~v~~~~~spd~~~ll~sg~  469 (502)
                        -.+...-+..|-||+.+.+|.|
T Consensus       370 ~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  370 KRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ----S----EEE-TTSSEEEEE--
T ss_pred             cccCCCCCeEEEccCCeEEEEEee
Confidence              1123466888999986666654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.79  E-value=0.81  Score=47.26  Aligned_cols=25  Identities=12%  Similarity=0.226  Sum_probs=21.1

Q ss_pred             EEEEEeCCCcEEEEECCCCcccccc
Q 010748          464 VLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       464 ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +++.++.+|.++.+|..+++.+-+.
T Consensus       474 lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       474 LVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             EEEEECCCCeEEEEECCCCCEeEEE
Confidence            5667888999999999999988654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.79  E-value=0.12  Score=49.71  Aligned_cols=200  Identities=13%  Similarity=0.132  Sum_probs=97.2

Q ss_pred             EeccCCCcEEEEEecCCc--EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe
Q 010748          273 AWNKEFRNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  350 (502)
                      +|.++|..+|+++..+|.  +.+.|+.+++..+.-.+-........++|++ +.++-......|+..|+++.+.......
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            678887777777776665  6666888887655443322223356677887 5665555667899999998775543333


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEeC-----------------------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748          351 VAADVESLAWDPHAEHSFVVSLE-----------------------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~~-----------------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      ....+-...|..+.....++|..                       ...|...|+.++          ....+..-...+
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG----------~~~~v~~~~~wl  190 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG----------ERKVVFEDTDWL  190 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------------EEEEEEESS-E
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC----------ceeEEEecCccc
Confidence            44444456664332223344321                       123444455543          233334455678


Q ss_pred             eEEEEcCCCCCEEEEEeC---CCc-EEEEECC--CCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC----CCcEEEE
Q 010748          408 CTISYNPLVPNLLATGST---DKM-VKLWDLS--NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS----KGKLEIW  477 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~---dg~-i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~----dg~i~vw  477 (502)
                      ..+.|+|..+.+|+-|-.   +.. -|||-++  .....++.... ....+..=-|.|||..+...+..    +..|.-+
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~  269 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY  269 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence            889999988788877764   221 3556444  33322222221 23345566789999865554332    2346667


Q ss_pred             ECCCCcc
Q 010748          478 DTLSDAG  484 (502)
Q Consensus       478 d~~~~~~  484 (502)
                      |+.+++.
T Consensus       270 d~~t~~~  276 (386)
T PF14583_consen  270 DPDTGER  276 (386)
T ss_dssp             -TTT--E
T ss_pred             CCCCCCc
Confidence            7776643

>PHA02713 hypothetical protein; Provisional

Probab=96.79  E-value=0.1  Score=54.24  Aligned_cols=147  Identities=11%  Similarity=0.098  Sum_probs=74.8

Q ss_pred             CcEEEEEecCC-----cEEEEeCCCCeee--EeeccCCCCeEEEEEcCCCCcEEEEEeCCC-------------------
Q 010748          279 RNILASASADK-----QVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------------------  332 (502)
Q Consensus       279 ~~~l~sgs~dg-----~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-------------------  332 (502)
                      +.+.+.|+.++     +|..||..+.+-.  ..+.........+..  ++ .+.+.|+.++                   
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccc
Confidence            45777777654     4888998766422  222211111222222  34 6777777653                   


Q ss_pred             ----cEEEEecCCCCCc--cceEeecCCeeEEEeCCCCCCEEEEEeCC------CcEEEEECCC-CCCCCCCCCCccceE
Q 010748          333 ----SVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRT-AKSDPDSTSQQSSFT  399 (502)
Q Consensus       333 ----~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~~~~~~d------g~v~i~d~~~-~~~~~~~~~~~~~~~  399 (502)
                          .+..||..+.+=.  ............+.+.   +.++++|+.+      ..+..||..+ ..       ...+..
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~---~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~  498 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK---DDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITT  498 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEEC---CEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccc
Confidence                4667777654311  1010111111122222   3466666643      2467788876 31       233333


Q ss_pred             EeccCCCeeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCeeE
Q 010748          400 LHAHDKAVCTISYNPLVPNLLATGSTDK--MVKLWDLSNNQPSC  441 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg--~i~vwd~~~~~~~~  441 (502)
                      +.........+.+.   +.+.++|+.++  .+-.||..+.+...
T Consensus       499 m~~~r~~~~~~~~~---~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        499 TESRLSALHTILHD---NTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             cCcccccceeEEEC---CEEEEEeeecceeehhhcCcccccccc
Confidence            33333333333332   38888999888  67788888876533

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.77  E-value=0.42  Score=44.79  Aligned_cols=150  Identities=15%  Similarity=0.147  Sum_probs=90.0

Q ss_pred             CcEEEEEecCCcEEEEeCCCC-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc----------
Q 010748          279 RNILASASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----------  347 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------  347 (502)
                      ++.|+.|..+| |.++++... +......  ...|..+...+.- +.|++-+ |+.+.++++..-.....          
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            45888998888 999998333 3333322  3349999999877 4554443 59999999876443321          


Q ss_pred             ----eEeecCCeeEEE-eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC-ccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748          348 ----KWAVAADVESLA-WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ-QSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       348 ----~~~~~~~v~~v~-~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                          .......+..++ -........++......|.+|........     . .....+. -...+.+++|.+   ..|+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~-----f~~~~ke~~-lp~~~~~i~~~~---~~i~  152 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS-----FSKLLKEIS-LPDPPSSIAFLG---NKIC  152 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc-----ccceeEEEE-cCCCcEEEEEeC---CEEE
Confidence                112223344444 11222234444445558888888764110     1 2233333 457789999984   6677


Q ss_pred             EEeCCCcEEEEECCCCCeeEEE
Q 010748          422 TGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      .|..++ ..+.|+.++....+.
T Consensus       153 v~~~~~-f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  153 VGTSKG-FYLIDLNTGSPSELL  173 (275)
T ss_pred             EEeCCc-eEEEecCCCCceEEe
Confidence            776554 889999977654444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.77  E-value=0.3  Score=47.55  Aligned_cols=117  Identities=13%  Similarity=0.145  Sum_probs=61.3

Q ss_pred             ceeeEEeccCCCcEEEEEec--------------------CCcEEEEeCCCCeeeEeeccCC--CCeEEEEEcC--CCCc
Q 010748          268 SVLGLAWNKEFRNILASASA--------------------DKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWNH--HSPQ  323 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~--------------------dg~v~vwd~~~~~~~~~~~~h~--~~v~~l~~~~--~~~~  323 (502)
                      --..+-|.|. .++++|...                    ..++.+||+.+.+.++++.--.  ..+..|.|..  ....
T Consensus       182 ~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~  260 (461)
T PF05694_consen  182 FGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY  260 (461)
T ss_dssp             ----EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred             CCCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc
Confidence            3456667776 556666532                    3679999999999999986433  2355677754  4434


Q ss_pred             EEEEEeCCCcEEEEec-CCCCCcc---------------------ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEE
Q 010748          324 ILLSGSFDRSVVMKDA-RISTHSG---------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       324 ~l~s~s~dg~i~iwd~-~~~~~~~---------------------~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d  381 (502)
                      -++.+...++|..|-- ..+.-..                     .......-|+.+..+.+...+.+++-..|.|+.||
T Consensus       261 gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD  340 (461)
T PF05694_consen  261 GFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD  340 (461)
T ss_dssp             EEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred             eEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence            4555555556655543 2211000                     00111345788899999887677777899999999


Q ss_pred             CCCC
Q 010748          382 IRTA  385 (502)
Q Consensus       382 ~~~~  385 (502)
                      +...
T Consensus       341 ISDP  344 (461)
T PF05694_consen  341 ISDP  344 (461)
T ss_dssp             -SST
T ss_pred             cCCC
Confidence            9886

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.018  Score=61.33  Aligned_cols=98  Identities=17%  Similarity=0.143  Sum_probs=70.4

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee-eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      ..-+.++.|+|.-....+.+..|+.|++..+..... +.++. ....++|++|+|.| ..++.|-..|++.-|-..-...
T Consensus       155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik  232 (1405)
T KOG3630|consen  155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIK  232 (1405)
T ss_pred             ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeeccccee
Confidence            345778999998777788899999999988764432 23333 56778999999999 8899999999998887543311


Q ss_pred             cc---ceEeecCCeeEEEeCCCCC
Q 010748          345 SG---FKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       345 ~~---~~~~~~~~v~~v~~~~~~~  365 (502)
                      ..   .-......|.+|+|-....
T Consensus       233 ~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  233 SEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             ecccCCCcCCCcceeEEEEeccee
Confidence            11   0111257799999986443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.71  E-value=0.00039  Score=66.95  Aligned_cols=210  Identities=18%  Similarity=0.222  Sum_probs=140.4

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      |-.......|-+.+.+ ++.++.+..|..|| +.++....+. .++....++|.-+++..++.+-..+.+.+||+.+...
T Consensus        33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             hccccceeeEecCCCc-eehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence            3344556678888665 77888888999999 4455444443 4567778999998877888888899999999987655


Q ss_pred             ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ...-.+....-.-+.|++..+ .++.+...|.+.+++.++.         +.......|...++++++.+.+  +.+.++
T Consensus       110 qqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~d  177 (615)
T KOG2247|consen  110 QQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCD  177 (615)
T ss_pred             HHHhccCcchHHHHhhccCCc-cccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecC
Confidence            443333333333377888655 6888888999999998875         3344444488899999998854  444444


Q ss_pred             CCCc----------EEEEECCCC----------------------------------------CeeEEEEecCCCCcEEE
Q 010748          425 TDKM----------VKLWDLSNN----------------------------------------QPSCIASRNPKAGAVFS  454 (502)
Q Consensus       425 ~dg~----------i~vwd~~~~----------------------------------------~~~~~~~~~~~~~~v~~  454 (502)
                      .|..          +.++.....                                        .+..+ .+....+-+.|
T Consensus       178 cd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~~~gni~c  256 (615)
T KOG2247|consen  178 CDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQEKYGNIHC  256 (615)
T ss_pred             cHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-EeeecCCceeE
Confidence            4432          333332210                                        11112 33334567889


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       455 ~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ..|--||+  |.-+-.-|.|.+-.+.+++.....|...
T Consensus       257 yrwylDg~--i~igf~ag~iV~iS~h~aeLgaeffqkl  292 (615)
T KOG2247|consen  257 YRWYLDGY--ILIGFDAGYIVSISAHNAELGAEFFQKL  292 (615)
T ss_pred             EEEecccc--ccccccceeEEEEeccchHHHHHHHHHh
Confidence            99999986  4456667778777888888877766544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.67  E-value=0.32  Score=51.64  Aligned_cols=79  Identities=19%  Similarity=0.204  Sum_probs=53.3

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCC----------Cee---eEee--------ccCCCCeEEEEEcCCC--C
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAA----------GKC---NLTL--------EHHTDKVQAVAWNHHS--P  322 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~----------~~~---~~~~--------~~h~~~v~~l~~~~~~--~  322 (502)
                      .-.|..|.+||+| .+||..|..| |.|-.+..          |+.   .+++        ..+...|..+.|||.+  .
T Consensus        84 ~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            3579999999995 4666666655 44433321          111   1111        2345689999999985  3


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCcc
Q 010748          323 QILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       323 ~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      ..|++-+.|+++++||+.....+.
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHPW  185 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCCe
Confidence            788889999999999998655544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.027  Score=60.03  Aligned_cols=147  Identities=15%  Similarity=0.123  Sum_probs=92.3

Q ss_pred             CeEEEEEcCCCCcEEEE--EeCCCcEEEEecCCCCCcc-----------ceEeecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748          311 KVQAVAWNHHSPQILLS--GSFDRSVVMKDARISTHSG-----------FKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~~-----------~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v  377 (502)
                      ++..+...++. ...++  .+.+-.|..||++......           ..........++.|+|.-+..+++...|+.|
T Consensus       102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            34445555564 33332  3334478899988643221           0111233467889999877678888899999


Q ss_pred             EEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-CCcEEEEE
Q 010748          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFSVA  456 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~  456 (502)
                      ++.-+....        ..+.. ..-....++++|+|.| ..++.|-..|++.-|-..-.....+...... ...|.+++
T Consensus       181 ~V~~~~~~~--------~~v~s-~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~  250 (1405)
T KOG3630|consen  181 RVKSTKQLA--------QNVTS-FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT  250 (1405)
T ss_pred             hhhhhhhhh--------hhhcc-cCcccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence            998776541        22222 2245678999999998 8899999999999887643321111111111 47899999


Q ss_pred             EcCCCCcEEEEE
Q 010748          457 FSEDSPFVLAIG  468 (502)
Q Consensus       457 ~spd~~~ll~sg  468 (502)
                      |.....|+++-+
T Consensus       251 Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  251 WLSTQEFLVVYG  262 (1405)
T ss_pred             EecceeEEEEec
Confidence            998887655444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.0088  Score=63.24  Aligned_cols=102  Identities=17%  Similarity=0.270  Sum_probs=73.7

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      .+++|++.|.+..+|++..        ..+...-..-.++|++++|+.+| .+++.|-.+|.|.+||+..+++.......
T Consensus       101 ~ivi~Ts~ghvl~~d~~~n--------L~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGN--------LGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcc--------cchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeec
Confidence            6888999999999998864        13333333456899999999998 89999999999999999998765544443


Q ss_pred             CC-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          447 PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       447 ~~-~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      ++ ...|..+.+..++. ++.++...|.  +|.+.
T Consensus       172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence            33 22344555556666 5777777775  66653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.62  E-value=0.15  Score=50.96  Aligned_cols=155  Identities=14%  Similarity=0.190  Sum_probs=96.2

Q ss_pred             ccceeeEEeccCCCcEEEEEe--cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEecC
Q 010748          266 TDSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs--~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~s~dg~i~iwd~~  340 (502)
                      -.+|..++|... ...+++.-  ..|.+++=|   .+.+..|    ..|..+.|.|-+   ...|++......|.+|.+.
T Consensus        19 iHPvhGlaWTDG-kqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWTDG-KQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEecCC-CEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            357899999753 55666653  344444333   2344444    458899999863   2356777888999999986


Q ss_pred             CCCC--ccceE----eecC----CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE
Q 010748          341 ISTH--SGFKW----AVAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       341 ~~~~--~~~~~----~~~~----~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  410 (502)
                      ....  .....    ....    -...+.|+|... ++++-+....-.+++++..        ...+..-....+.|.|.
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d--------~srVkaDi~~~G~IhCA  161 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCD--------SSRVKADIKTSGLIHCA  161 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeC--------CceEEEeccCCceEEEE
Confidence            3221  11111    1111    134578999765 5555554444456777765        23444434567889999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          411 SYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      +|.++|.+++++.+..=.-++||-...
T Consensus       162 CWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  162 CWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EecCcCCEEEEEeCCeEEEEEecCchh
Confidence            999999777777776666789986543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.55  E-value=0.3  Score=50.76  Aligned_cols=147  Identities=18%  Similarity=0.132  Sum_probs=75.3

Q ss_pred             CcEEEEEecCCc-----EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC------cEEEEecCCCCCcc-
Q 010748          279 RNILASASADKQ-----VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMKDARISTHSG-  346 (502)
Q Consensus       279 ~~~l~sgs~dg~-----v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg------~i~iwd~~~~~~~~-  346 (502)
                      +.+.|+|+.||.     |-.||..+.+-...-. ......+.....-++.+.++|+.++      ++..||..+..-.. 
T Consensus       381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             CEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            568889988864     7778877654321111 1112222222222237788888654      45677776643211 


Q ss_pred             -ceEeecCCeeEEEeCCCCCCEEEEEeCCCc-----EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748          347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGT-----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       347 -~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                       .............+   +..++++|+.++.     |..||..+..       ...+..+......+..+.+   +..+.
T Consensus       460 ~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~-------W~~v~~m~~~rs~~g~~~~---~~~ly  526 (571)
T KOG4441|consen  460 APMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ-------WTMVAPMTSPRSAVGVVVL---GGKLY  526 (571)
T ss_pred             CCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCc-------eeEcccCccccccccEEEE---CCEEE
Confidence             11111111222222   2447778877763     7778887652       1222222222233333333   24778


Q ss_pred             EEEeCCCc-----EEEEECCCCCe
Q 010748          421 ATGSTDKM-----VKLWDLSNNQP  439 (502)
Q Consensus       421 ~t~s~dg~-----i~vwd~~~~~~  439 (502)
                      ++|+.||.     |..||..+.+.
T Consensus       527 ~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  527 AVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             EEecccCccccceeEEcCCCCCce
Confidence            88887764     66677666653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.54  E-value=0.74  Score=43.67  Aligned_cols=200  Identities=11%  Similarity=0.077  Sum_probs=112.5

Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--  350 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--  350 (502)
                      .|.+..+.++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+ ..|+++.  ..+.+++............  
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~-g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAG-GRLIACE--HGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCC-CeEEEEc--cccEEEeccCCceeEEecccc
Confidence            57777555777777788999999886643 2232 23334444444444 3455443  3355566544333111111  


Q ss_pred             ---ecCCeeEEEeCCCCCCEEEEEeCC------------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          351 ---VAADVESLAWDPHAEHSFVVSLED------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       351 ---~~~~v~~v~~~~~~~~~~~~~~~d------------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                         .....+.+...|+|.  ++.++..            |.|+.++.. +         .....+..+-..-++|+|||+
T Consensus       106 ~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g---------~~~~l~~~~~~~~NGla~SpD  173 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPD-G---------GVVRLLDDDLTIPNGLAFSPD  173 (307)
T ss_pred             CCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCC-C---------CEEEeecCcEEecCceEECCC
Confidence               123456677788765  4444333            223333321 1         233333344455688999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCC--C---CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-cEEEEECCCCccccccc
Q 010748          416 VPNLLATGSTDKMVKLWDLSN--N---QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLSDAGISNRF  489 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~--~---~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg-~i~vwd~~~~~~~~~~~  489 (502)
                      +..++++=+..+.|.-|++..  +   ............+..-.++...+|.+ .+++...| .|.+|+.. ++++..+.
T Consensus       174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-w~~a~~~g~~v~~~~pd-G~l~~~i~  251 (307)
T COG3386         174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-WVAAVWGGGRVVRFNPD-GKLLGEIK  251 (307)
T ss_pred             CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-EEecccCCceEEEECCC-CcEEEEEE
Confidence            955555556668888887752  1   11122233334566677888888874 43444444 89999988 77776654


Q ss_pred             cC
Q 010748          490 SK  491 (502)
Q Consensus       490 ~~  491 (502)
                      ..
T Consensus       252 lP  253 (307)
T COG3386         252 LP  253 (307)
T ss_pred             CC
Confidence            44

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.35  E-value=0.21  Score=45.73  Aligned_cols=175  Identities=10%  Similarity=0.130  Sum_probs=101.5

Q ss_pred             eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECC
Q 010748          305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  383 (502)
Q Consensus       305 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~  383 (502)
                      +.+....+.++.|+|+. +.|++......-.++=...++..... ...-+....+.|...+ .++++--.++.+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEc
Confidence            34555669999999999 66666666666656544444443311 1223456677777643 345555567788888776


Q ss_pred             CCCCCCCCCC-CccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC-eeEEEEecCC-------CCcEEE
Q 010748          384 TAKSDPDSTS-QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-PSCIASRNPK-------AGAVFS  454 (502)
Q Consensus       384 ~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-~~~~~~~~~~-------~~~v~~  454 (502)
                      .......... .-++......+...-.++|.|.. ..|..+-.-.-+.||.+.... ...+.....+       ...|.+
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            5421111100 01111111125677899999987 666666666667777665332 1111111111       234678


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          455 VAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       455 ~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      +.|.+....+|+-+..++.+.-.|....
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecCCC
Confidence            8888776667888888888877777544

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.32  E-value=0.34  Score=50.44  Aligned_cols=191  Identities=10%  Similarity=0.167  Sum_probs=98.4

Q ss_pred             cceeeEEeccCCCcEEEEEe-----cCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 010748          267 DSVLGLAWNKEFRNILASAS-----ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--------  331 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs-----~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--------  331 (502)
                      ..+...+++|++....++..     .|+  .|.+++.. +.. ..+.. ....+.-.|+|+| ..|.+....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG-~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDA-DAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCC-CceEEEecCcceEEEec
Confidence            46788899999665544442     243  45555542 222 32321 2237788999997 444444322        


Q ss_pred             ----CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-ccCCC
Q 010748          332 ----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKA  406 (502)
Q Consensus       332 ----g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~  406 (502)
                          +.+.+.++..+....   .....|..+.|+|+|..++++.  +|.|++--+....... .. ......+. .-...
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~-l~~~~~l~~~l~~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YA-LTNPREVGPGLGDT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-ee-ecccEEeecccCCc
Confidence                233333443332221   3456799999999998655555  4777763322211000 00 01112222 22334


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEE--ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcE
Q 010748          407 VCTISYNPLVPNLLATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL  474 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i  474 (502)
                      +.++.|..++ .+ +++..++...+|  ++...... .........++.+++-++. .  |+....+|.+
T Consensus       499 ~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~-~--iyv~~~~g~~  562 (591)
T PRK13616        499 AVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS-T--VYVTDARAVL  562 (591)
T ss_pred             cccceEecCC-EE-EEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc-e--EEEEcCCceE
Confidence            6889999977 44 455554444444  44433311 1122223567888888774 3  3344566633

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.29  E-value=1.7  Score=44.94  Aligned_cols=56  Identities=9%  Similarity=0.070  Sum_probs=38.5

Q ss_pred             cEEEEeCCCCeeeEeeccCCCC---------eEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCc
Q 010748          290 QVKIWDVAAGKCNLTLEHHTDK---------VQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      +|.-.|+++|+....++.....         ..-+....++.  ..++.+..+|.+.+.|.++++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            6777899999988877642211         11222323452  47889999999999999987753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.20  E-value=0.36  Score=50.32  Aligned_cols=174  Identities=11%  Similarity=0.032  Sum_probs=90.3

Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-----CCC--cEEEEecCCCCCccceEeecCCeeEEEe
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDR--SVVMKDARISTHSGFKWAVAADVESLAW  360 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-----~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~  360 (502)
                      +|.+.-.+-..-.++.-..+....+.+.+.+|++....++..     .+.  .|.+++...  ... .........+-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~-~lt~g~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAV-QVLEGHSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cce-eeecCCCCCCceE
Confidence            666655443222233222233346788999999954444442     243  455555422  222 1222334788899


Q ss_pred             CCCCCCEEEEEeC-----------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          361 DPHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       361 ~~~~~~~~~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      +|++..+.++...           .+.+.+.++..+         ....   ...+.|..+.|||+| ..|+... ++.|
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g---------e~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v  470 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS---------AVAS---RVPGPISELQLSRDG-VRAAMII-GGKV  470 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCc---------hhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEE
Confidence            9987644333221           123333333322         1111   235679999999999 5444443 4677


Q ss_pred             EE---EECCCCCeeE--EEEec-CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          430 KL---WDLSNNQPSC--IASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       430 ~v---wd~~~~~~~~--~~~~~-~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      .+   -....+...+  ...+. .-...+.++.|.+++. |+ ++..++...+|.+.
T Consensus       471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             EEEEEEeCCCCceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEe
Confidence            77   4434443111  11122 2233468899999998 34 45555555566553

>PHA03098 kelch-like protein; Provisional

Probab=96.20  E-value=0.16  Score=52.86  Aligned_cols=187  Identities=16%  Similarity=0.162  Sum_probs=87.5

Q ss_pred             CcEEEEEecCC------cEEEEeCCCCeeeEe--eccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCc
Q 010748          279 RNILASASADK------QVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHS  345 (502)
Q Consensus       279 ~~~l~sgs~dg------~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~  345 (502)
                      +.+++.|+.++      .+..||+.+.+....  +.........+.+  ++ .+++.|+.+     ..+..||..+.+-.
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            34666666542      577888877654221  1111112222222  34 677778765     34667777654311


Q ss_pred             cce-EeecCCeeEEEeCCCCCCEEEEEeCC------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          346 GFK-WAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       346 ~~~-~~~~~~v~~v~~~~~~~~~~~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      ... ......-.+++..  ++.+++.|+..      ..+..||..+..       ...+..+.........+..  ++ .
T Consensus       372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-------W~~~~~~p~~r~~~~~~~~--~~-~  439 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK-------WSKGSPLPISHYGGCAIYH--DG-K  439 (534)
T ss_pred             eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe-------eeecCCCCccccCceEEEE--CC-E
Confidence            100 0011111112221  23466666532      357888887642       1111111111111122222  23 5


Q ss_pred             EEEEEeCC--------CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010748          419 LLATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       419 ~l~t~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-----g~i~vwd~~~~~  483 (502)
                      +++.|+..        ..+.+||..+.+...+............+.+  ++. +++.||.+     ..|.+||..++.
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCCE
Confidence            66666643        2388899988765433222211111122222  454 67777764     468889887653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.18  E-value=0.023  Score=36.80  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       449 ~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      ...|.+++|+|... +||.|..+|.|.||.+ +++.+
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcCc
Confidence            45699999999998 7999999999999999 55543

>PRK10115 protease 2; Provisional

Probab=95.99  E-value=2.7  Score=44.99  Aligned_cols=199  Identities=8%  Similarity=0.029  Sum_probs=97.3

Q ss_pred             cceeeEEeccCCCcEEEEEecCC----cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEE
Q 010748          267 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMK  337 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg----~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iw  337 (502)
                      -.+..+.|+|+++.++++...+|    .|++.|+.++..+...-....  ..++|.+++..++++...+     ..|..+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            45778899999664444444444    588999988864322211111  5699999985555554432     356777


Q ss_pred             ecCCCC--CccceEeecCCeeEEEeCC-CCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe-eEEE
Q 010748          338 DARIST--HSGFKWAVAADVESLAWDP-HAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-CTIS  411 (502)
Q Consensus       338 d~~~~~--~~~~~~~~~~~v~~v~~~~-~~~~~~~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~  411 (502)
                      ++.++.  .............-..+.+ ++..+++.+.  .++.+.+++.....       ..+ ..+..+...+ ..+.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~-------~~~-~~~~~~~~~~~~~~~  276 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD-------AEP-FVFLPRRKDHEYSLD  276 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC-------CCc-eEEEECCCCCEEEEE
Confidence            777763  2222222222233223333 5554443332  33568888854321       121 2222222222 2222


Q ss_pred             EcCCCCCEEEEEeC-CCc--EEEEECCC-CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          412 YNPLVPNLLATGST-DKM--VKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       412 ~sp~~~~~l~t~s~-dg~--i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                       +..+ .+++.... ...  |...++.. .+...+... .....|..+.+..+  +++++...+|.-+++-+.
T Consensus       277 -~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        277 -HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLFTD--WLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             -eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEc
Confidence             2222 33333222 122  43344442 222122211 11236778888733  577777778765555443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.98  E-value=0.45  Score=42.09  Aligned_cols=154  Identities=18%  Similarity=0.226  Sum_probs=87.9

Q ss_pred             ccccccccccCCCceEEEEEecCCcc-----eeEEEEEecCCCCCCCeeeeecccc---CCCcceeeeecCCCCCCCC-C
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVS-----HLEVYILEESDGGDPNLYVHHHIII---PAFPLCMAWLDCPLKDREK-G  209 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~-----~l~v~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~s~~-~  209 (502)
                      ....++-..+|+|++. .|...+...     ...+|.|..         .||-..+   -.++..++|       +.+ .
T Consensus       108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~---------~h~v~~i~~~v~IsNgl~W-------d~d~K  170 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA---------GHQVELIWNCVGISNGLAW-------DSDAK  170 (310)
T ss_pred             hcccccCccCCCCcee-eeeeccccccccccccEEEEecc---------CCCceeeehhccCCccccc-------cccCc
Confidence            4567888999999994 444333111     112222221         2221111   123455666       444 5


Q ss_pred             CEEEEecCCCcEEEeeC--CCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          210 NFMAVGSMEPAIEIWDL--DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+-.+-+.+-+|.-||.  .+++...+..++.          .++.   +..    .| -.--.++.... +++.+++-.
T Consensus       171 ~fY~iDsln~~V~a~dyd~~tG~~snr~~i~d----------lrk~---~~~----e~-~~PDGm~ID~e-G~L~Va~~n  231 (310)
T KOG4499|consen  171 KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFD----------LRKS---QPF----ES-LEPDGMTIDTE-GNLYVATFN  231 (310)
T ss_pred             EEEEEccCceEEeeeecCCCcccccCcceeEE----------eccC---CCc----CC-CCCCcceEccC-CcEEEEEec
Confidence            56667777788878884  5554443332221          0110   100    11 11112233344 567777788


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEE
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  328 (502)
                      .++|...|..+|+.+..++-.+..|+|++|--.+-.+|++.
T Consensus       232 g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  232 GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            89999999999999999988899999999976543444443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.94  E-value=0.37  Score=48.42  Aligned_cols=160  Identities=13%  Similarity=0.241  Sum_probs=95.1

Q ss_pred             CCCeEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCccceEeecCCeeEEEeCCC----CCCEEEEEeCCCcEEEEEC
Q 010748          309 TDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~----~~~~~~~~~~dg~v~i~d~  382 (502)
                      -.++..++|.... +.+++.-  .+|.+++=|.+       ..+.-..|..++|.|-    .+ .+++.-....|.+|-+
T Consensus        19 iHPvhGlaWTDGk-qVvLT~L~l~~gE~kfGds~-------viGqFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWTDGK-QVVLTDLQLHNGEPKFGDSK-------VIGQFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQL   89 (671)
T ss_pred             hccccceEecCCC-EEEEEeeeeeCCccccCCcc-------EeeccceeeeeeecCcccCCCC-ceEEEeccceEEEEEe
Confidence            3478889997544 6666653  33444332221       2333456888999885    23 4555667788999998


Q ss_pred             CCCCCCCCCCCCccceEEeccC---C--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEE
Q 010748          383 RTAKSDPDSTSQQSSFTLHAHD---K--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF  457 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~h~---~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~  457 (502)
                      .......    .+.+.....+-   -  --.++.|+|.. ..|+.-.....-.+++++.........+ ...|.|.|.+|
T Consensus        90 ~~s~~e~----~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACW  163 (671)
T PF15390_consen   90 CPSTTER----NKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACW  163 (671)
T ss_pred             ccCcccc----ccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEe
Confidence            6432111    12222221111   1  12457799976 5666555544445667665543333444 45688999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          458 SEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       458 spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .+||+.++++.|+.=.-+|||-....
T Consensus       164 T~DG~RLVVAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  164 TKDGQRLVVAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             cCcCCEEEEEeCCeEEEEEecCchhh
Confidence            99998776666666667899865543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.92  E-value=2  Score=42.54  Aligned_cols=152  Identities=14%  Similarity=0.186  Sum_probs=83.2

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEecc---CCCcEEEE
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRNILAS  284 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~l~s  284 (502)
                      +...|++|+..|.++||+...........+|                       ...-..+|..|..-+   ......++
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lll-----------------------E~~l~~PILqv~~G~F~s~~~~~~La   92 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLL-----------------------ETQLKDPILQVECGKFVSGSEDLQLA   92 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEE-----------------------EEecCCcEEEEEeccccCCCCcceEE
Confidence            5679999999999999998432211111111                       112335676665432   11222223


Q ss_pred             EecCCcEEEEeCCC--Ce-------eeEeeccCC--CCeEEEEEcCCC----CcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748          285 ASADKQVKIWDVAA--GK-------CNLTLEHHT--DKVQAVAWNHHS----PQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       285 gs~dg~v~vwd~~~--~~-------~~~~~~~h~--~~v~~l~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (502)
                      .-.-..+.||.+..  |.       .+..+..|.  .....+++-|-|    ..++.+-+.||.+.+|+-+...... ..
T Consensus        93 VLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~-~l  171 (418)
T PF14727_consen   93 VLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR-FL  171 (418)
T ss_pred             EecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE-Ec
Confidence            34556677777621  11       112222222  233344443322    3678889999999999976543211 11


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCC
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  384 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~  384 (502)
                      ...--...++|.+... .|++++.+..|..|....
T Consensus       172 p~~llPgPl~Y~~~tD-sfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  172 PDFLLPGPLCYCPRTD-SFVTASSSWTLECYKYQD  205 (418)
T ss_pred             CCCCCCcCeEEeecCC-EEEEecCceeEEEecHHH
Confidence            1111123456666544 788888888998887643

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.89  E-value=3.2  Score=44.55  Aligned_cols=174  Identities=9%  Similarity=0.062  Sum_probs=109.2

Q ss_pred             cEEEEeCCCCeeeEeecc-CC---CCeEEEEEcCCCCcEEEEEeC----------CCcEEEEecCCCCCccce--EeecC
Q 010748          290 QVKIWDVAAGKCNLTLEH-HT---DKVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFK--WAVAA  353 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~-h~---~~v~~l~~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~--~~~~~  353 (502)
                      .++++|-++-+.++..+- ..   ..|.++.|..+...++++|+.          .|.|.+|.+.........  ....+
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            467777666655443321 11   245556688885577887763          578888887763322211  23345


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+.++.--  +. .+++ +-+..|++|+..+.         +.++.-..|..++..+...-.+ ..++.|..-+++.+.-
T Consensus       831 av~aL~~f--ng-kllA-~In~~vrLye~t~~---------~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~  896 (1096)
T KOG1897|consen  831 AVYALVEF--NG-KLLA-GINQSVRLYEWTTE---------RELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQ  896 (1096)
T ss_pred             ceeehhhh--CC-eEEE-ecCcEEEEEEcccc---------ceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEE
Confidence            55555432  23 2333 34678999999875         4556666778888888888877 8899998888877765


Q ss_pred             CCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          434 LSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       434 ~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      .+..+. ........+..+++++.+-.+..|  +.+...|.+.+-..
T Consensus       897 y~~~eg~f~evArD~~p~Wmtaveil~~d~y--lgae~~gNlf~v~~  941 (1096)
T KOG1897|consen  897 YKGDEGNFEEVARDYNPNWMTAVEILDDDTY--LGAENSGNLFTVRK  941 (1096)
T ss_pred             EeccCCceEEeehhhCccceeeEEEecCceE--EeecccccEEEEEe
Confidence            554431 123344566778888888887764  33456677766544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.87  E-value=0.7  Score=45.57  Aligned_cols=52  Identities=12%  Similarity=0.113  Sum_probs=38.7

Q ss_pred             cceeeEEeccC----------CCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcC
Q 010748          267 DSVLGLAWNKE----------FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH  319 (502)
Q Consensus       267 ~~V~~l~~~~~----------~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~  319 (502)
                      ..|+++.|-|-          +...++.|..+|.|++|.. +|..+..-.-|..+|..+....
T Consensus        57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            45666665442          1468999999999999984 6776666566899999998854

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.81  E-value=0.028  Score=36.37  Aligned_cols=35  Identities=14%  Similarity=0.307  Sum_probs=29.6

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC  301 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~  301 (502)
                      ....|.+++|+|. ..+||.|+.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence            3456999999999 669999999999999998 4543

>PHA03098 kelch-like protein; Provisional

Probab=95.72  E-value=0.48  Score=49.29  Aligned_cols=159  Identities=11%  Similarity=0.080  Sum_probs=74.1

Q ss_pred             CcEEEEEecC-----CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEecCCCCCc
Q 010748          279 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHS  345 (502)
Q Consensus       279 ~~~l~sgs~d-----g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~  345 (502)
                      +.+++.|+.+     ..+..||..+++-..  .+....... +++. -++ .+++.|+..      ..+..||..+.+-.
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            4577777765     357788887654321  111111111 1222 233 677777642      35788887754311


Q ss_pred             cce-Ee-ecCCeeEEEeCCCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          346 GFK-WA-VAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       346 ~~~-~~-~~~~v~~v~~~~~~~~~~~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      ... .. ......++..   ++.+++.|+.+        ..+.+||..+..       ...+..+.........+.+  +
T Consensus       420 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-------W~~~~~~~~~r~~~~~~~~--~  487 (534)
T PHA03098        420 KGSPLPISHYGGCAIYH---DGKIYVIGGISYIDNIKVYNIVESYNPVTNK-------WTELSSLNFPRINASLCIF--N  487 (534)
T ss_pred             ecCCCCccccCceEEEE---CCEEEEECCccCCCCCcccceEEEecCCCCc-------eeeCCCCCcccccceEEEE--C
Confidence            100 00 0011112222   23466666542        237888887642       1111111111111122222  3


Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748          416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      + .+++.|+.+     +.|.+||..+.+...+..++...+.|.
T Consensus       488 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~  529 (534)
T PHA03098        488 N-KIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSLE  529 (534)
T ss_pred             C-EEEEEcCCcCCcccceeEEEeCCCCEEEecCCCccccccee
Confidence            3 677777654     468889988876544444444444443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.65  E-value=2.3  Score=41.12  Aligned_cols=79  Identities=18%  Similarity=0.139  Sum_probs=44.6

Q ss_pred             ccceEEeccCCCeeEEEEcCCC------CCEEEEEeCCCcEEEEECCCCCe-eEEEEe-cCCCCcEEEEEEcCCCCcEEE
Q 010748          395 QSSFTLHAHDKAVCTISYNPLV------PNLLATGSTDKMVKLWDLSNNQP-SCIASR-NPKAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l~~sp~~------~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~-~~~~~~v~~~~~spd~~~ll~  466 (502)
                      .++..+..| ..++.+.|....      +.++++.-..+.|....+..... .....+ ......+..+++.|||. |++
T Consensus       244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv  321 (331)
T PF07995_consen  244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-LYV  321 (331)
T ss_dssp             --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-EEE
T ss_pred             ccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-EEE
Confidence            355555555 556777776421      14566655567788877764432 222222 33444899999999998 566


Q ss_pred             EEeCCCcEE
Q 010748          467 IGGSKGKLE  475 (502)
Q Consensus       467 sg~~dg~i~  475 (502)
                      +...+|.|.
T Consensus       322 ~~d~~G~iy  330 (331)
T PF07995_consen  322 SDDSDGKIY  330 (331)
T ss_dssp             EE-TTTTEE
T ss_pred             EECCCCeEe
Confidence            666778764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.64  E-value=1.6  Score=40.01  Aligned_cols=207  Identities=15%  Similarity=0.130  Sum_probs=108.6

Q ss_pred             eeeEEeccCCCcEEEEEecCCc-EEEEeCCCCeeeEeeccCCCC--eEEEEEcCCCCcEEEEEeCC-----CcEEEEecC
Q 010748          269 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDK--VQAVAWNHHSPQILLSGSFD-----RSVVMKDAR  340 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~-v~vwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~  340 (502)
                      ...|+|+|..+.-++.+-.-|+ ..++|....+...++...++.  --.=.|+|+| .+|++.-.|     |.|-+||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEecc
Confidence            3457788876666777766665 567888877665554321111  1123589999 777665443     789999998


Q ss_pred             CCC-CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEE--------------------ECCCCCCCCCCCCCccceE
Q 010748          341 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--------------------DIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       341 ~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~--------------------d~~~~~~~~~~~~~~~~~~  399 (502)
                      ..- .+.....+.-....+.|.++|.. +++.  +|-|...                    |..++..       ....+
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrt-lvva--nGGIethpdfgR~~lNldsMePSlvlld~atG~l-------iekh~  218 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRT-LVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL-------IEKHT  218 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcE-EEEe--CCceecccccCccccchhhcCccEEEEeccccch-------hhhcc
Confidence            432 22223345556778889998874 4433  2333333                    2222110       00111


Q ss_pred             Ee--ccCCCeeEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCeeEEEEec-----CCCCcEEEEEEcCCCCcEEEE
Q 010748          400 LH--AHDKAVCTISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       400 ~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~-----i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~spd~~~ll~s  467 (502)
                      +.  .+.-.|..++..+++ ...+.+-..|.     -.|=-...+++.......     .....|-+++.+.+...+.+|
T Consensus       219 Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lT  297 (366)
T COG3490         219 LPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALT  297 (366)
T ss_pred             CchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEe
Confidence            11  233456666666655 33333322221     001111112211111110     012346677887766655566


Q ss_pred             EeCCCcEEEEECCCCccccc
Q 010748          468 GGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       468 g~~dg~i~vwd~~~~~~~~~  487 (502)
                      +-..+...+||..++..+..
T Consensus       298 SP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         298 SPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             cCCCCeEEEEEcCCCcEEec
Confidence            55566788999999987654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.59  E-value=4.2  Score=43.85  Aligned_cols=195  Identities=15%  Similarity=0.196  Sum_probs=108.3

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEeeccCCCC--------eEEEEEcCC---------------CCcEEEEEeCCCcEEEE
Q 010748          281 ILASASADKQVKIWDVAAGKCNLTLEHHTDK--------VQAVAWNHH---------------SPQILLSGSFDRSVVMK  337 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~--------v~~l~~~~~---------------~~~~l~s~s~dg~i~iw  337 (502)
                      .|+.++.++.|.-.|..+|+.+.++......        ...+.+...               ....++.++.|+.|.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            6778888899999999999988887532211        122333211               11478888899999999


Q ss_pred             ecCCCCCccceEeecCCee-------------EEEeCCC-CCCEEEEEeC----------CCcEEEEECCCCCCCCCCCC
Q 010748          338 DARISTHSGFKWAVAADVE-------------SLAWDPH-AEHSFVVSLE----------DGTIKGFDIRTAKSDPDSTS  393 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~-------------~v~~~~~-~~~~~~~~~~----------dg~v~i~d~~~~~~~~~~~~  393 (502)
                      |.++++..-. +...+.+.             .+.-.|- ....+++|+.          +|.|+-||+++++       
T Consensus       276 DA~TGk~~W~-fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk-------  347 (764)
T TIGR03074       276 DADTGKLCED-FGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA-------  347 (764)
T ss_pred             ECCCCCEEEE-ecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc-------
Confidence            9988875531 11111110             0111110 0125666643          6889999999984       


Q ss_pred             CccceEEecc----------------C-CCe-eEEEEcCCCCCEEEEEe------------------CCCcEEEEECCCC
Q 010748          394 QQSSFTLHAH----------------D-KAV-CTISYNPLVPNLLATGS------------------TDKMVKLWDLSNN  437 (502)
Q Consensus       394 ~~~~~~~~~h----------------~-~~v-~~l~~sp~~~~~l~t~s------------------~dg~i~vwd~~~~  437 (502)
                        .++.+..-                . ..+ ..+++.+.. .+++.+.                  ..++|.-.|+.++
T Consensus       348 --l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG  424 (764)
T TIGR03074       348 --LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG  424 (764)
T ss_pred             --EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCC
Confidence              33333210                0 111 233444443 3333322                  1244666677777


Q ss_pred             CeeEEEEecCCC--------CcEEEEEEcC-CCC--cEEEEEeCCCcEEEEECCCCccccc
Q 010748          438 QPSCIASRNPKA--------GAVFSVAFSE-DSP--FVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       438 ~~~~~~~~~~~~--------~~v~~~~~sp-d~~--~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +..=.+....|.        .++ -+.+.. +|.  -+++.++.+|.+.+.|..+++.+..
T Consensus       425 k~~W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       425 KERWVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             ceEEEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            743222222221        122 112222 441  2588899999999999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=95.57  E-value=0.0049  Score=58.94  Aligned_cols=18  Identities=6%  Similarity=0.291  Sum_probs=12.2

Q ss_pred             eeccCCCCCcCCcccCCCCHH
Q 010748            6 SWVPKGASKAVPEEAEPPSKE   26 (502)
Q Consensus         6 ~~~~~g~~~~~~~~~~~~~~~   26 (502)
                      -||.+-  ..+..|..| ++=
T Consensus        14 dWi~~~--~~~~~KlTi-~Dt   31 (458)
T PF10446_consen   14 DWIRQD--TDYKRKLTI-NDT   31 (458)
T ss_pred             hhhhcc--ccccccccH-HHH
Confidence            388874  677778777 543

>PHA02790 Kelch-like protein; Provisional

Probab=95.53  E-value=0.45  Score=48.61  Aligned_cols=183  Identities=10%  Similarity=0.044  Sum_probs=86.1

Q ss_pred             CcEEEEEecCC-----cEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEecCCCCCcc--c
Q 010748          279 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARISTHSG--F  347 (502)
Q Consensus       279 ~~~l~sgs~dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~--~  347 (502)
                      ..+++.|+.++     ++..||..+++...  .+.........+.  -++ .+.+.|+.+  ..+..||..+.+-..  .
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANN-KLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECC-EEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            34667777543     57778887765322  2221111122222  234 677777754  357778765432110  0


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ..........+..   ++.+.++|+.++   .+..||.++..       ...+..+.........+.+  ++ .+.+.| 
T Consensus       349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~-------W~~~~~m~~~r~~~~~~~~--~~-~IYv~G-  414 (480)
T PHA02790        349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQ-------WQFGPSTYYPHYKSCALVF--GR-RLFLVG-  414 (480)
T ss_pred             CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCE-------EEeCCCCCCccccceEEEE--CC-EEEEEC-
Confidence            0000111122222   234666666543   46778876541       1111111111111122222  22 555555 


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010748          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-----g~i~vwd~~~~~  483 (502)
                        |.+.+||..+.+...+.......... +++. -++. ++++||.+     ..+..||..+++
T Consensus       415 --G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~-IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        415 --RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNK-LLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             --CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCE-EEEECCcCCCcccceEEEEECCCCe
Confidence              35788999887755443332222222 2222 2444 78888864     357788876643

>PRK10115 protease 2; Provisional

Probab=95.42  E-value=4.7  Score=43.25  Aligned_cols=250  Identities=12%  Similarity=0.091  Sum_probs=119.1

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d-  218 (502)
                      -.+..+.++|++++|+.+...+..-...+++.+...+   ...   ...++.....++|       +++++.|+....+ 
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg---~~l---~~~i~~~~~~~~w-------~~D~~~~~y~~~~~  193 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG---NWY---PELLDNVEPSFVW-------ANDSWTFYYVRKHP  193 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC---CCC---CccccCcceEEEE-------eeCCCEEEEEEecC
Confidence            3467789999999999987666555667777776543   110   0111222234666       6788777666543 


Q ss_pred             -----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccccee-eEEeccCCCcEEEEEec--CCc
Q 010748          219 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL-GLAWNKEFRNILASASA--DKQ  290 (502)
Q Consensus       219 -----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~~l~sgs~--dg~  290 (502)
                           ..|+.+++.+......                         ..+........ .+..+.++..+++.++.  ++.
T Consensus       194 ~~~~~~~v~~h~lgt~~~~d~-------------------------lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~  248 (686)
T PRK10115        194 VTLLPYQVWRHTIGTPASQDE-------------------------LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSE  248 (686)
T ss_pred             CCCCCCEEEEEECCCChhHCe-------------------------EEEeeCCCCEEEEEEEcCCCCEEEEEEECCcccc
Confidence                 2456666654311110                         01111111122 22333354434433322  356


Q ss_pred             EEEEeCC--CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCccceEee-c-CCeeEEEeCCC
Q 010748          291 VKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAV-A-ADVESLAWDPH  363 (502)
Q Consensus       291 v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~-~-~~v~~v~~~~~  363 (502)
                      +.+|+..  .+.....+..-......+. +..+ .+++....+   ..|...++...........+ . ..+..+.+.. 
T Consensus       249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-  325 (686)
T PRK10115        249 VLLLDAELADAEPFVFLPRRKDHEYSLD-HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-  325 (686)
T ss_pred             EEEEECcCCCCCceEEEECCCCCEEEEE-eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-
Confidence            8888842  3332222221122222222 3333 343333322   23444455422222223333 2 3577777763 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-ccCCCeeEEEEc--CCCCCEEEEEeC---CCcEEEEECCCC
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYN--PLVPNLLATGST---DKMVKLWDLSNN  437 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~~l~t~s~---dg~i~vwd~~~~  437 (502)
                       ..++++...+|.-+++-+...        ...+..+. .....+..+.++  +++..++++.+.   -+.+..+|+.++
T Consensus       326 -~~l~~~~~~~g~~~l~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        326 -DWLVVEERQRGLTSLRQINRK--------TREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             -CEEEEEEEeCCEEEEEEEcCC--------CCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence             457777777887665544321        11223322 222223333344  333345555443   456888888876


Q ss_pred             Ce
Q 010748          438 QP  439 (502)
Q Consensus       438 ~~  439 (502)
                      +.
T Consensus       397 ~~  398 (686)
T PRK10115        397 ER  398 (686)
T ss_pred             cE
Confidence            53

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.29  E-value=0.032  Score=58.10  Aligned_cols=169  Identities=14%  Similarity=0.150  Sum_probs=100.2

Q ss_pred             ccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCC-CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          139 SEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       139 ~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .+.|-+++|-.... .++     .+++.+-||..+.-.+ ..+.|.+|-..+....|--+.|.++.    ++.-++..+-
T Consensus       132 ~G~v~dl~fah~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~----~~~~~ic~~~  202 (1283)
T KOG1916|consen  132 PGGVGDLQFAHTKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA----VNKVYICYGL  202 (1283)
T ss_pred             CCCcccccccccCChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccc----cccceeeecc
Confidence            35566666643321 111     2334567777775444 23466777777888888888898773    4568899999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE-----------eccCCCcEEEEE
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA-----------WNKEFRNILASA  285 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~~l~sg  285 (502)
                      .+|.|++.+.++..                            ...+.+|...+..++           .+|+ +..||.+
T Consensus       203 ~~~~i~lL~~~ra~----------------------------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpD-Gtv~a~a  253 (1283)
T KOG1916|consen  203 KGGEIRLLNINRAL----------------------------RSLFRSHSQRVTDMAFFAEGVLKLASLSPD-GTVFAWA  253 (1283)
T ss_pred             CCCceeEeeechHH----------------------------HHHHHhcCCCcccHHHHhhchhhheeeCCC-CcEEEEe
Confidence            99999998876321                            122334655555544           4677 5588888


Q ss_pred             ecCCcEEEEeCC-----CCeeeEeeccCC-CCeEEEEEcCCCC--------cEEEEE-eCCCcEEEEecCCCCCc
Q 010748          286 SADKQVKIWDVA-----AGKCNLTLEHHT-DKVQAVAWNHHSP--------QILLSG-SFDRSVVMKDARISTHS  345 (502)
Q Consensus       286 s~dg~v~vwd~~-----~~~~~~~~~~h~-~~v~~l~~~~~~~--------~~l~s~-s~dg~i~iwd~~~~~~~  345 (502)
                      +.||.++.|.+.     ..+|++..+.|. .+-.|.-++.+..        .+++++ ..+..+++|.....++.
T Consensus       254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            888888877653     234566666676 3333333433220        123333 34566777776654443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.20  E-value=1.4  Score=40.26  Aligned_cols=142  Identities=10%  Similarity=0.051  Sum_probs=87.3

Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCccceEeecCC--eeEEEeCCCCCCEEEEE-----eCCCcEEEEEC
Q 010748          311 KVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVS-----LEDGTIKGFDI  382 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~v~~~~~~~~~~~~~-----~~dg~v~i~d~  382 (502)
                      ....|.++|..+.-++.+-.-|+ ..++|....+.+.......+.  .-.-+|+|+|. ++++.     ..-|.|-+||.
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEec
Confidence            33457788877666776666665 467888876665533322221  22346899887 44443     23478999999


Q ss_pred             CCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-------CC-----------cEEEEECCCCCeeEEEE
Q 010748          383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-------DK-----------MVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-------dg-----------~i~vwd~~~~~~~~~~~  444 (502)
                      +..        ...+-.+..|.-.-..+.+.++| +.|+.+..       -|           ++.+.|..++..+...+
T Consensus       148 r~~--------fqrvgE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~  218 (366)
T COG3490         148 REG--------FQRVGEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT  218 (366)
T ss_pred             ccc--------cceecccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence            976        46777888888888889999998 66555432       11           12233333333222223


Q ss_pred             ec--CCCCcEEEEEEcCCCC
Q 010748          445 RN--PKAGAVFSVAFSEDSP  462 (502)
Q Consensus       445 ~~--~~~~~v~~~~~spd~~  462 (502)
                      +.  .+.-.|..++..++|.
T Consensus       219 Lp~~l~~lSiRHld~g~dgt  238 (366)
T COG3490         219 LPASLRQLSIRHLDIGRDGT  238 (366)
T ss_pred             CchhhhhcceeeeeeCCCCc
Confidence            33  3455688888888887

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.18  E-value=2.6  Score=38.86  Aligned_cols=167  Identities=14%  Similarity=0.125  Sum_probs=103.0

Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC--CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA--DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  386 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~  386 (502)
                      .+-+..+.++.   .+...+..+.-++++|+.++..+........  -..++..+  | ++.+++.-+.-+.++|+.+..
T Consensus        86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCC
Confidence            45566677765   5677788888999999999887664443333  23333333  3 467777756667789998873


Q ss_pred             CCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEE
Q 010748          387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVL  465 (502)
Q Consensus       387 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll  465 (502)
                      .      ....-+.......-..++.|  | ++...+..|+-+.+-|+..... .++-... ....+.++..+++.-| +
T Consensus       160 s------P~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y-~  228 (370)
T COG5276         160 S------PQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAY-L  228 (370)
T ss_pred             C------ceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeE-E
Confidence            2      12223333334444667777  3 6777777889999999987653 3333332 2337888988888764 4


Q ss_pred             EEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748          466 AIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       466 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      +. ... .+.+-|..+.+. .++|+.+...
T Consensus       229 vv-y~e-gvlivd~s~~ss-p~~~gsyet~  255 (370)
T COG5276         229 VV-YDE-GVLIVDVSGPSS-PTVFGSYETS  255 (370)
T ss_pred             EE-ccc-ceEEEecCCCCC-ceEeeccccC
Confidence            43 333 467777755442 3455554443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.14  E-value=2.7  Score=38.84  Aligned_cols=161  Identities=11%  Similarity=0.046  Sum_probs=89.6

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe-cCCCCCcc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARISTHSG  346 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~  346 (502)
                      .+.+.++++++..+.+....++.-.||-...+.....+. ....+..-.|.+++ .+.+....+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCccee
Confidence            688999999965444444233333444333333333321 22367788999997 6666666666666664 33333222


Q ss_pred             ceE--eec-CCeeEEEeCCCCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748          347 FKW--AVA-ADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       347 ~~~--~~~-~~v~~v~~~~~~~~~~~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      ...  ... ..|..+.++|+|..+.++..  ..+.|.+--+.............+..........++.+.|.+.+ .+++
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V  181 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV  181 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence            111  111 28999999999987666653  35677776554332110000012222223345688999999987 5555


Q ss_pred             EEeC-CCcEEE
Q 010748          422 TGST-DKMVKL  431 (502)
Q Consensus       422 t~s~-dg~i~v  431 (502)
                      .+.. ++.+..
T Consensus       182 ~~~~~~~~~~~  192 (253)
T PF10647_consen  182 LGRSAGGPVVR  192 (253)
T ss_pred             EeCCCCCceeE
Confidence            5544 343433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.07  E-value=1  Score=44.47  Aligned_cols=140  Identities=19%  Similarity=0.126  Sum_probs=90.0

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCC------CcEEEEEeCCCcEEEEecCCCCCccceEee---
Q 010748          281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS------PQILLSGSFDRSVVMKDARISTHSGFKWAV---  351 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---  351 (502)
                      ++..|..-..++-.|+..|+.+.....|..-  -+.|.|..      +..-++|-.+..|.-.|.|...........   
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence            4455666778888899999999999877665  46777753      112345556666776777654422111111   


Q ss_pred             --cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          352 --AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       352 --~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                        .....|..-..  ..++++++..|-|++||--..         .....+++-...|..+..+.+|..+|+||  ...+
T Consensus       560 ~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yl  626 (776)
T COG5167         560 KTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTANGKHILATC--KNYL  626 (776)
T ss_pred             ccccccccccccc--CceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeecCCcEEEEee--cceE
Confidence              22233333222  348999999999999996543         34445566777889999999985555554  3457


Q ss_pred             EEEECC
Q 010748          430 KLWDLS  435 (502)
Q Consensus       430 ~vwd~~  435 (502)
                      .+-|++
T Consensus       627 lL~d~~  632 (776)
T COG5167         627 LLTDVP  632 (776)
T ss_pred             EEEecc
Confidence            777764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.85  E-value=0.12  Score=32.34  Aligned_cols=35  Identities=34%  Similarity=0.368  Sum_probs=28.0

Q ss_pred             CcEEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCcc
Q 010748          450 GAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       450 ~~v~~~~~spd~~--~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      |.|.++.|+|...  -+|+.+-..|.|.|+|++++-.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~   37 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM   37 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence            5689999997543  4788888889999999986433

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.73  E-value=7.2  Score=41.76  Aligned_cols=36  Identities=11%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             CcccceeeEEeccCC--CcEEEEEecCCcEEEEeCCCC
Q 010748          264 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~--~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .+...|..+.|+|.+  +..|+.=..|+++++||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            456789999999974  357777888999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.65  E-value=3.6  Score=37.97  Aligned_cols=156  Identities=13%  Similarity=0.107  Sum_probs=84.3

Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEE-CCCCCCCC
Q 010748          311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDP  389 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d-~~~~~~~~  389 (502)
                      .+.+.++++++..+.++...++.-.+|-.+......... ....+..-.|++++. +.++...+...+++. ...+.   
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~---   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT---   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCc---
Confidence            688999999994444444334444444444333222111 334778889999854 566656566666663 23221   


Q ss_pred             CCCCCccceEEecc--CCCeeEEEEcCCCCCEEEEEe--CCCcEEEEECCC---CCeeE----EEEecCCCCcEEEEEEc
Q 010748          390 DSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSN---NQPSC----IASRNPKAGAVFSVAFS  458 (502)
Q Consensus       390 ~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~---~~~~~----~~~~~~~~~~v~~~~~s  458 (502)
                           .........  ...|+.+.+||+|.++.+...  .++.|.+--+..   +.+..    ..........+..+.|.
T Consensus       100 -----~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 -----GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             -----ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence                 111122211  128999999999955444442  246666654421   21111    11122334678999999


Q ss_pred             CCCCcEEEEEeCCCcEEE
Q 010748          459 EDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       459 pd~~~ll~sg~~dg~i~v  476 (502)
                      +++..++++...++.+..
T Consensus       175 ~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  175 DDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             CCCEEEEEeCCCCCceeE
Confidence            999844444334443333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.63  E-value=0.87  Score=44.92  Aligned_cols=142  Identities=16%  Similarity=0.206  Sum_probs=90.4

Q ss_pred             EEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC------CEEEEEeCCCcEEEEECCCCCCCCCCCCCccc
Q 010748          324 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       324 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~------~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  397 (502)
                      ++..|+.-..++-.|+..++.+. .|.....+ -+.|.|...      ..-++|-++..|.-.|.|-..        ..+
T Consensus       482 i~~dg~~~~kLykmDIErGkvve-eW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--------NKi  551 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVE-EWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--------NKI  551 (776)
T ss_pred             EEecCCCcccceeeecccceeee-EeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccC--------Cce
Confidence            34455556677777777776554 67666666 677777431      235567677777777777542        111


Q ss_pred             eEEec----cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc
Q 010748          398 FTLHA----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK  473 (502)
Q Consensus       398 ~~~~~----h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~  473 (502)
                      .....    .....+|..-..  ..++|++|..|-|++||--..+  ....+++....|-.+..+.+|.++||||  ...
T Consensus       552 ~v~esKdY~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~ilaTC--k~y  625 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHILATC--KNY  625 (776)
T ss_pred             eeeeehhcccccccccccccc--CceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEEEee--cce
Confidence            11111    112223332222  3699999999999999975544  3344566677899999999999888876  347


Q ss_pred             EEEEECCC
Q 010748          474 LEIWDTLS  481 (502)
Q Consensus       474 i~vwd~~~  481 (502)
                      +.+-|+.-
T Consensus       626 llL~d~~i  633 (776)
T COG5167         626 LLLTDVPI  633 (776)
T ss_pred             EEEEeccc
Confidence            88877743

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.39  E-value=2.6  Score=43.85  Aligned_cols=161  Identities=13%  Similarity=0.214  Sum_probs=80.3

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEe--e--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE-ecCCC
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--L--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK-DARIS  342 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~--~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iw-d~~~~  342 (502)
                      .+..+.|+.+  ..|++...+|++.+|++-.. .+..  +  ......|..+.+...|   +++-..+|.+.+- +...+
T Consensus        85 ~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~~~  158 (829)
T KOG2280|consen   85 ELIGMGWSDD--EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVEEP  158 (829)
T ss_pred             CeeeecccCC--ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc---eEEEecCCcEEEEcCCCcc
Confidence            7889999988  36888899999999997532 2222  1  1122345445554555   3333444555443 33332


Q ss_pred             CCccceEeecCCeeEEEeC---CCC-CCEEEEEe-CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          343 THSGFKWAVAADVESLAWD---PHA-EHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~---~~~-~~~~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      ......-.......+-+|.   |+. ...++--. ..| ..++-....        ......+....+.+..+..||+. 
T Consensus       159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~--------~~q~~~~~~~~~~~~ki~VS~n~-  228 (829)
T KOG2280|consen  159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES--------RVQLHALSWPNSSVVKISVSPNR-  228 (829)
T ss_pred             hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc--------cccccccCCCCceEEEEEEcCCc-
Confidence            2111000011111112222   211 11111111 111 112222221        11222222234567888999987 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          418 NLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      ++|+--...|.|.+-++...+..+-+.
T Consensus       229 ~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  229 RFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ceEEEEecCCcEEEEecchhhhhhccC
Confidence            889998999999998887666434333

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.38  E-value=4.1  Score=37.39  Aligned_cols=184  Identities=11%  Similarity=0.101  Sum_probs=104.9

Q ss_pred             cceeeEEeccCCCcEEEEEecCC--cEEEEeCCCCeeeEeeccC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          267 DSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      .-...|.|..+ +.++-|.+.-|  .|+.+|+.+++......-. .----.++...+  .+..-.-.++...+||..+.+
T Consensus        45 aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   45 AFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             -EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE
T ss_pred             ccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccce
Confidence            34567888665 45777777666  6999999999877655321 122233444332  455556678899999998766


Q ss_pred             CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec--cC---CCeeEEEEcCCCCC
Q 010748          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPN  418 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~sp~~~~  418 (502)
                      ... .+...+.-..++..  +. .++.+.....|+++|..+.         ....++..  ..   ..++-+.|.. | .
T Consensus       122 ~~~-~~~y~~EGWGLt~d--g~-~Li~SDGS~~L~~~dP~~f---------~~~~~i~V~~~g~pv~~LNELE~i~-G-~  186 (264)
T PF05096_consen  122 KIG-TFPYPGEGWGLTSD--GK-RLIMSDGSSRLYFLDPETF---------KEVRTIQVTDNGRPVSNLNELEYIN-G-K  186 (264)
T ss_dssp             EEE-EEE-SSS--EEEEC--SS-CEEEE-SSSEEEEE-TTT----------SEEEEEE-EETTEE---EEEEEEET-T-E
T ss_pred             EEE-EEecCCcceEEEcC--CC-EEEEECCccceEEECCccc---------ceEEEEEEEECCEECCCcEeEEEEc-C-E
Confidence            554 44555666666643  44 5777766788999998775         33333322  22   2345566652 3 3


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEec-------------CCCCcEEEEEEcCCCCcEEEEE
Q 010748          419 LLATGSTDKMVKLWDLSNNQPSCIASRN-------------PKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~v~~~~~spd~~~ll~sg  468 (502)
                      +.|=.=....|...|..+++......+.             ....-.+.+++.|....+++||
T Consensus       187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            4444444556777788887743332221             1134578999999887677776

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.34  E-value=6.1  Score=39.23  Aligned_cols=296  Identities=9%  Similarity=0.081  Sum_probs=144.9

Q ss_pred             CceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCC
Q 010748          151 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID  230 (502)
Q Consensus       151 ~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~  230 (502)
                      ...|++|+..|   .|+||.-.........+....+  +....++++.-.|..  ....+.||+ -.-..+.||.+....
T Consensus        37 ~d~IivGS~~G---~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s--~~~~~~LaV-LhP~kl~vY~v~~~~  108 (418)
T PF14727_consen   37 SDKIIVGSYSG---ILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVS--GSEDLQLAV-LHPRKLSVYSVSLVD  108 (418)
T ss_pred             ccEEEEecccc---EEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccC--CCCcceEEE-ecCCEEEEEEEEecC
Confidence            35888898887   4555544332221123333332  344556776644311  224556666 445788899883222


Q ss_pred             CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEecc-CCCcEEEEEecCCcEEEEeCCCCeeeEeeccCC
Q 010748          231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLEHHT  309 (502)
Q Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~  309 (502)
                      ....   .+.          .-.-.....+.+....-...+-.|-. .++.+|+.-|.||.+.+++-+.-...+.+.. .
T Consensus       109 g~~~---~g~----------~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~  174 (418)
T PF14727_consen  109 GTVE---HGN----------QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F  174 (418)
T ss_pred             CCcc---cCc----------EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence            1100   000          00000011111111111222222222 2256899999999999999665443444433 2


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC--------------------CCCccceE--eecCCeeEE---EeCCCC
Q 010748          310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--------------------STHSGFKW--AVAADVESL---AWDPHA  364 (502)
Q Consensus       310 ~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~--------------------~~~~~~~~--~~~~~v~~v---~~~~~~  364 (502)
                      --...+.|.+.. ..|++++.+..+.-|....                    ++.....|  .....+..+   .++...
T Consensus       175 llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~  253 (418)
T PF14727_consen  175 LLPGPLCYCPRT-DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE  253 (418)
T ss_pred             CCCcCeEEeecC-CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence            233456787777 7788898888888886431                    11111222  223333333   333322


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE-EE------cCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-SY------NPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~------sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      ..+++.|  ...+.+.+...          ...+...- .....|+ .|      .|.....++.++.++++.||.=.+ 
T Consensus       254 ~~IvvLg--er~Lf~l~~~G----------~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-  319 (418)
T PF14727_consen  254 SDIVVLG--ERSLFCLKDNG----------SLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-  319 (418)
T ss_pred             ceEEEEe--cceEEEEcCCC----------eEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-
Confidence            2233332  33444444421          12222211 2211221 11      222223588889999999986332 


Q ss_pred             CeeEEEEecCCCCcEEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          438 QPSCIASRNPKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~--spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                         ++........+| ++..  .++-+.+|++-+.+|.+.+-=+.|...+..
T Consensus       320 ---L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~  367 (418)
T PF14727_consen  320 ---LVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQ  367 (418)
T ss_pred             ---EEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCcccc
Confidence               333333333333 2322  233344788899999999988888765443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.26  E-value=0.0036  Score=64.70  Aligned_cols=70  Identities=11%  Similarity=0.111  Sum_probs=47.1

Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEE-----------EcCCCCcEEEEEeCCCcEEEE
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVA-----------WNHHSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~-----------~~~~~~~~l~s~s~dg~i~iw  337 (502)
                      |..+-|-+. .-++..+-.+++|++..+.+... ..+.+|+..+..++           .+|+| ..|++++.||.+++|
T Consensus       186 V~wcp~~~~-~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  186 VSWCPIAVN-KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFY  262 (1283)
T ss_pred             eeecccccc-cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCcccee
Confidence            333333444 45777777888998877664432 34455776665554           47888 889999999999888


Q ss_pred             ecCC
Q 010748          338 DARI  341 (502)
Q Consensus       338 d~~~  341 (502)
                      .+.-
T Consensus       263 Qiyi  266 (1283)
T KOG1916|consen  263 QIYI  266 (1283)
T ss_pred             eeee
Confidence            7653

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.23  E-value=3.8  Score=36.48  Aligned_cols=139  Identities=13%  Similarity=0.177  Sum_probs=82.6

Q ss_pred             CeEEEEEcCCCCcEEEEEeC----------CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEE
Q 010748          311 KVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF  380 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~  380 (502)
                      ....-..+|+| ++ +.|..          .|.++.|-..  ..+...+..-.--+.++|+.+...+.++-+.+-.|.-|
T Consensus       110 R~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  110 RLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             ccccCccCCCC-ce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            44555667888 55 33332          1334444332  22223344444456789998877777777888888778


Q ss_pred             E--CCCCCCCCCCCCCccceEEec----cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE
Q 010748          381 D--IRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       381 d--~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      |  ..++....    .+.++.+..    ....--.+++...| ++.+++-.-++|..+|..+++.  +..+......|+|
T Consensus       186 dyd~~tG~~sn----r~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~--L~eiklPt~qits  258 (310)
T KOG4499|consen  186 DYDCPTGDLSN----RKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKI--LLEIKLPTPQITS  258 (310)
T ss_pred             ecCCCcccccC----cceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcE--EEEEEcCCCceEE
Confidence            7  55543211    122333322    11112344555556 7778888889999999999994  4444445778999


Q ss_pred             EEEcCC
Q 010748          455 VAFSED  460 (502)
Q Consensus       455 ~~~spd  460 (502)
                      ++|--.
T Consensus       259 ccFgGk  264 (310)
T KOG4499|consen  259 CCFGGK  264 (310)
T ss_pred             EEecCC
Confidence            999644

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.97  E-value=3.3  Score=43.60  Aligned_cols=163  Identities=12%  Similarity=0.084  Sum_probs=93.8

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCc---ceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEE
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQP---HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILAS  284 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s  284 (502)
                      .++|+++. .+.|.||+++.......   ...+-.....      ..............|  .|+.|....- +..+|+.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~------~~~~D~~~s~~p~PH--tIN~i~v~~lg~~EVLl~  119 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEF------TSTPDRLISTWPFPH--TINFIKVGDLGGEEVLLL  119 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccc------cccccccccCCCCCc--eeeEEEecccCCeeEEEE
Confidence            66777765 68999999876444221   1111000000      000000000011223  3555544332 2458999


Q ss_pred             EecCCcEEEEeCCC-------C-------------eeeEeeccCCCCeEEEEEc--CCCCcEEEEEeCCCcEEEEecCCC
Q 010748          285 ASADKQVKIWDVAA-------G-------------KCNLTLEHHTDKVQAVAWN--HHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       285 gs~dg~v~vwd~~~-------~-------------~~~~~~~~h~~~v~~l~~~--~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      |..||.|.+|.+.+       .             ++...+. ....+++++++  ... +++|+++....|.||-....
T Consensus       120 c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTVFaf~l~  197 (717)
T PF08728_consen  120 CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLIAVSSNSQEVTVFAFALV  197 (717)
T ss_pred             EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEEEEecCCceEEEEEEecc
Confidence            99999999997531       0             0112222 34578999998  555 78888888888888765442


Q ss_pred             --CC-ccceEeecCCeeEEEeCCCC--CC---EEEEEeCCCcEEEEEC
Q 010748          343 --TH-SGFKWAVAADVESLAWDPHA--EH---SFVVSLEDGTIKGFDI  382 (502)
Q Consensus       343 --~~-~~~~~~~~~~v~~v~~~~~~--~~---~~~~~~~dg~v~i~d~  382 (502)
                        +. ......+...|.+|+|.++.  +.   .+++++-.|.+.+|++
T Consensus       198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence              11 11122466779999997754  22   6777889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.75  E-value=7.5  Score=42.36  Aligned_cols=135  Identities=13%  Similarity=0.189  Sum_probs=78.8

Q ss_pred             eecCCeeEEEeC---CC--CCCEEEEEeCCCcEEEEECCCC------CCCCCCCCCccceEEecc---CCCeeEEEEcCC
Q 010748          350 AVAADVESLAWD---PH--AEHSFVVSLEDGTIKGFDIRTA------KSDPDSTSQQSSFTLHAH---DKAVCTISYNPL  415 (502)
Q Consensus       350 ~~~~~v~~v~~~---~~--~~~~~~~~~~dg~v~i~d~~~~------~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~  415 (502)
                      ....+|..|+|.   ..  ....++..-....+.|+...-.      ..........++..+..+   ..+...++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            356788888887   21  1112444445566777762211      111111112445555433   346788999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCC--e-eEEEEecCCCCc----------EEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          416 VPNLLATGSTDKMVKLWDLSNNQ--P-SCIASRNPKAGA----------VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~--~-~~~~~~~~~~~~----------v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      ....||.....|...||++....  . ........+.|.          -..+.|.++...+|+ + ....+.++|+.+.
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~-~r~~l~~~d~~~~  234 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-C-NRSKLMLIDFESN  234 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-E-cCCceEEEECCCC
Confidence            77899999999999999992111  0 011111111222          347889888775454 3 4557999999887


Q ss_pred             cccc
Q 010748          483 AGIS  486 (502)
Q Consensus       483 ~~~~  486 (502)
                      ....
T Consensus       235 ~~~~  238 (765)
T PF10214_consen  235 WQTE  238 (765)
T ss_pred             Cccc
Confidence            6643

These proteins are found in fungi.

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=93.66  E-value=0.025  Score=54.28  Aligned_cols=12  Identities=8%  Similarity=0.326  Sum_probs=7.4

Q ss_pred             CCCCEEEEecCC
Q 010748          207 EKGNFMAVGSME  218 (502)
Q Consensus       207 ~~~~~la~g~~d  218 (502)
                      |+..=|++|+.|
T Consensus       190 PDSTDFVCGTLD  201 (458)
T PF10446_consen  190 PDSTDFVCGTLD  201 (458)
T ss_pred             CCcccccCCCcC
Confidence            566666666654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.55  E-value=0.46  Score=46.09  Aligned_cols=169  Identities=13%  Similarity=0.059  Sum_probs=96.8

Q ss_pred             eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee--cC----Cee-EEEeCCCCCCEEEEEeCC
Q 010748          302 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--AA----DVE-SLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       302 ~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~----~v~-~v~~~~~~~~~~~~~~~d  374 (502)
                      +..+..-...|..+-..|++ +.|+.-+. ..+.++++.+..........  ++    .|+ ++..- .|..-++++..|
T Consensus       213 i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~d  289 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHED  289 (733)
T ss_pred             hhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCC
Confidence            33344455678888899999 66666554 78888888765433221111  11    122 11111 244568888888


Q ss_pred             CcEEEE-ECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748          375 GTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       375 g~v~i~-d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      |.|.-| |++......    ...++.+.-...++.-+.--.+ .+-+++-+..|++.++.....++.....   -...+.
T Consensus       290 G~vsQWFdvr~~~~p~----l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~  361 (733)
T COG4590         290 GLVSQWFDVRRDGQPH----LNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQ  361 (733)
T ss_pred             CceeeeeeeecCCCCc----ceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcceehhh---hhcCcc
Confidence            887665 776652100    1111222222233433332222 3667888889999888766655322222   123566


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       454 ~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      -+++||.+.+++.  -..|.++++.+.+..
T Consensus       362 ~~~~Sp~~~~Ll~--e~~gki~~~~l~Nr~  389 (733)
T COG4590         362 LVAMSPNQAYLLS--EDQGKIRLAQLENRN  389 (733)
T ss_pred             eeeeCcccchhee--ecCCceEEEEecCCC
Confidence            7899999997443  456789999987654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.43  E-value=4  Score=38.60  Aligned_cols=151  Identities=10%  Similarity=0.077  Sum_probs=73.4

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-ST  343 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~  343 (502)
                      -...+..+.-+++ +.++++++.-....-|+.-...-...-+..+..|++|.|.|++ .+.+ ....|.|++=+... ..
T Consensus       143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGE  219 (302)
T ss_dssp             ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEE
T ss_pred             CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-CEEE-EeCCcEEEEccCCCCcc
Confidence            3467888888888 4577777765566678754322222223346899999999997 5544 44888888877211 11


Q ss_pred             C----ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe---ccCCCeeEEEEcCCC
Q 010748          344 H----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLV  416 (502)
Q Consensus       344 ~----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~  416 (502)
                      .    ........-.+..++|.+.+.  +.+++..|.+. .....+         +.-....   .-...+..|.|.+. 
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~--~wa~gg~G~l~-~S~DgG---------ktW~~~~~~~~~~~n~~~i~f~~~-  286 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNE--IWAVGGSGTLL-VSTDGG---------KTWQKDRVGENVPSNLYRIVFVNP-  286 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS---EEEEESTT-EE-EESSTT---------SS-EE-GGGTTSSS---EEEEEET-
T ss_pred             ccccccCCcccCceeeEEEEecCCCC--EEEEeCCccEE-EeCCCC---------ccceECccccCCCCceEEEEEcCC-
Confidence            0    000111223478899998643  44455566543 334433         2222222   22445778888764 


Q ss_pred             CCEEEEEeCCCcEEEE
Q 010748          417 PNLLATGSTDKMVKLW  432 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vw  432 (502)
                       ..-...+.+|.|--|
T Consensus       287 -~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  287 -DKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -TEEEEE-STTEEEEE
T ss_pred             -CceEEECCCcEEEEe
Confidence             344455667876544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.32  E-value=0.31  Score=30.61  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCC--cEEEEEeCCCcEEEEecCC
Q 010748          310 DKVQAVAWNHHSP--QILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       310 ~~v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~  341 (502)
                      +.|.++.|+|...  .+|+.+-.-|.|.++|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998764  6899888999999999995

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.14  E-value=3.5  Score=42.90  Aligned_cols=120  Identities=12%  Similarity=0.103  Sum_probs=68.8

Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeC--CCCCCEEEEEeCCCcEEEEECCCCCC
Q 010748          311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAKS  387 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~--~~~~~~~~~~~~dg~v~i~d~~~~~~  387 (502)
                      .++-+.-+..+ ...++-+....+.|||.+...... ..+.....|..+.|.  |++. .+++.+-...|.+|--.....
T Consensus        31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhh
Confidence            44444445544 455555556689999998766322 122347789999985  5555 455555567777775432211


Q ss_pred             CCCCCCCccceEE--eccC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          388 DPDSTSQQSSFTL--HAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       388 ~~~~~~~~~~~~~--~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      ....+...++..+  ..|+ .+|....|.++| .++ +|+ .+.+.|++-.
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~Lv-V~s-GNqlfv~dk~  156 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLV-VGS-GNQLFVFDKW  156 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCC-eEE-EEe-CCEEEEECCC
Confidence            1111112334333  3444 689999999987 444 433 3468888643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.85  E-value=0.015  Score=56.41  Aligned_cols=135  Identities=17%  Similarity=0.189  Sum_probs=92.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .+.+.-+++++.+..+..||-...-.                             ....-++....++|..++...++.+
T Consensus        43 ~~e~~nlavaca~tiv~~YD~agq~~-----------------------------le~n~tg~aldm~wDkegdvlavlA   93 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDKAGQVI-----------------------------LELNPTGKALDMAWDKEGDVLAVLA   93 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhhhccee-----------------------------cccCCchhHhhhhhccccchhhhhh
Confidence            45555588888888888888532110                             0112345677888888777677777


Q ss_pred             ecCCcEEEEeCCCCeeeEe-e-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748          286 SADKQVKIWDVAAGKCNLT-L-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~-~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  363 (502)
                      -..+.+.+||+.+...... + ..|+...  +.|++.. ..++.+...|.+.+++.++.+.......|...+++++|.+.
T Consensus        94 ek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE  170 (615)
T KOG2247|consen   94 EKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE  170 (615)
T ss_pred             hcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence            8889999999976532111 1 1122222  6788887 77888889999999999988777656668889999999985


Q ss_pred             CCCEEEEEeCC
Q 010748          364 AEHSFVVSLED  374 (502)
Q Consensus       364 ~~~~~~~~~~d  374 (502)
                      +  +.+.++.+
T Consensus       171 d--~vil~dcd  179 (615)
T KOG2247|consen  171 D--YVILCDCD  179 (615)
T ss_pred             c--eeeecCcH
Confidence            4  34444433

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.70  E-value=8.7  Score=35.93  Aligned_cols=96  Identities=15%  Similarity=0.253  Sum_probs=61.8

Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe------CCCcEEEEecCCCCCccceE----eecCCeeEE
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKW----AVAADVESL  358 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~v  358 (502)
                      ..|++||..+.+-..--.+-.+.|++|.|..+. .++++|.      ....+..||+.+..-.....    ..++++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            359999988776655555667899999998655 6777764      35578889988765322222    235778888


Q ss_pred             EeCCC-CCCEEEEEe-CCC--cEEEEECCCC
Q 010748          359 AWDPH-AEHSFVVSL-EDG--TIKGFDIRTA  385 (502)
Q Consensus       359 ~~~~~-~~~~~~~~~-~dg--~v~i~d~~~~  385 (502)
                      .+... ...+++.|. .+|  .|..||=.+.
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W  125 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSW  125 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCce
Confidence            77443 334555554 333  4666765543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.64  E-value=9.3  Score=36.15  Aligned_cols=160  Identities=11%  Similarity=0.162  Sum_probs=76.6

Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          306 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       306 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~  385 (502)
                      ..-.+.+..+.-++++ .++++++.-..+.-|+--...-..........|.++.|.|++. +.+ ....|.|++=+....
T Consensus       141 ~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  141 SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDD  217 (302)
T ss_dssp             -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTE
T ss_pred             cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCC
Confidence            3445778888889998 7777776655566777543322232334567899999999854 434 458888888772221


Q ss_pred             CCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCCCCcEEEEEEcCCCCcE
Q 010748          386 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFV  464 (502)
Q Consensus       386 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~l  464 (502)
                      ....    .++...+....-.+..++|.+.+ .+.++|+ .|.+ +.....++.-.... ...-.+.++.+.|.+..+ -
T Consensus       218 ~~~w----~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-g  289 (302)
T PF14870_consen  218 GETW----SEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-G  289 (302)
T ss_dssp             EEEE-------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-E
T ss_pred             cccc----ccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-e
Confidence            0000    00111111223347889999865 5555544 5544 44555555211111 123345688888876654 2


Q ss_pred             EEEEeCCCcEEEE
Q 010748          465 LAIGGSKGKLEIW  477 (502)
Q Consensus       465 l~sg~~dg~i~vw  477 (502)
                      ++ -|.+|.|.-|
T Consensus       290 f~-lG~~G~ll~~  301 (302)
T PF14870_consen  290 FV-LGQDGVLLRY  301 (302)
T ss_dssp             EE-E-STTEEEEE
T ss_pred             EE-ECCCcEEEEe
Confidence            44 4678877655

>PHA02790 Kelch-like protein; Provisional

Probab=92.51  E-value=9.5  Score=39.02  Aligned_cols=58  Identities=10%  Similarity=0.063  Sum_probs=29.6

Q ss_pred             CcEEEEEecCC---cEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          279 RNILASASADK---QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       279 ~~~l~sgs~dg---~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      +.+.+.|+.++   ++..||..+.+-..  .+.........+.+  ++ .+.+.|   |.+.+||.++.
T Consensus       363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~-~IYv~G---G~~e~ydp~~~  425 (480)
T PHA02790        363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GR-RLFLVG---RNAEFYCESSN  425 (480)
T ss_pred             CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CC-EEEEEC---CceEEecCCCC
Confidence            45677777553   47788887654322  12111111122222  33 555655   35778887654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.41  E-value=4.6  Score=42.10  Aligned_cols=100  Identities=14%  Similarity=0.203  Sum_probs=62.4

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-ccCCCeeEEEEc--CCCCCEEEEEeCCCcEEEEECC-----CCC
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYN--PLVPNLLATGSTDKMVKLWDLS-----NNQ  438 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~~l~t~s~dg~i~vwd~~-----~~~  438 (502)
                      ..++......+.|||.+..         ...+... .....|..+.|.  |++ +.+++.|..+.|.+|--.     ...
T Consensus        43 ~a~V~~~~~~LtIWD~~~~---------~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSG---------VLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             EEEEECCCCEEEEEEcCCc---------EEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCC
Confidence            4445555567999999976         2222111 446789999886  466 777888888889888542     211


Q ss_pred             ----eeEEEEecCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          439 ----PSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       439 ----~~~~~~~~~~~-~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                          +........+. .+|....|.++|.. ++ |+ .+.+.|++-
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L-vV-~s-GNqlfv~dk  155 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTL-VV-GS-GNQLFVFDK  155 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeE-EE-Ee-CCEEEEECC
Confidence                11222223333 57899999999973 33 33 346888864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.38  E-value=4.4  Score=40.43  Aligned_cols=82  Identities=10%  Similarity=0.063  Sum_probs=52.6

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEE---------CCCCCeeE----------EEEecCCCCcEEEEEEcCCC--Cc
Q 010748          405 KAVCTISYNPLVPNLLATGSTDKMVKLWD---------LSNNQPSC----------IASRNPKAGAVFSVAFSEDS--PF  463 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd---------~~~~~~~~----------~~~~~~~~~~v~~~~~spd~--~~  463 (502)
                      -.|..+..++.| ..++-.|.+|.+.++=         +..+++..          +++... .-.+..++|+|+.  .-
T Consensus       104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~-~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST-SLTLKQAAWHPSSILDP  181 (741)
T ss_pred             EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC-ceeeeeccccCCccCCc
Confidence            357788889988 7777778888655543         12233211          111121 2346788999986  22


Q ss_pred             EEEEEeCCCcEEEEECCCCcccccc
Q 010748          464 VLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       464 ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .|..-++|..|+||++.....+...
T Consensus       182 hL~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             eEEEEecCcEEEEEecCCcchhhcc
Confidence            3666688999999999887777443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.37  E-value=6.9  Score=41.32  Aligned_cols=105  Identities=16%  Similarity=0.148  Sum_probs=69.4

Q ss_pred             cEEEEEeCCCcEEEEecCC-------C----C--------CccceEeecCCeeEEEeC--CCCCCEEEEEeCCCcEEEEE
Q 010748          323 QILLSGSFDRSVVMKDARI-------S----T--------HSGFKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       323 ~~l~s~s~dg~i~iwd~~~-------~----~--------~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~~dg~v~i~d  381 (502)
                      .+|+.+..||.|.+|.+..       .    .        .+.........++.++++  .. .+++++++....|.+|-
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-SRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-ceEEEEecCCceEEEEE
Confidence            6889999999999997631       0    0        012334556778889987  53 45788888777787776


Q ss_pred             CCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC--CC---EEEEEeCCCcEEEEEC
Q 010748          382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PN---LLATGSTDKMVKLWDL  434 (502)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~~---~l~t~s~dg~i~vwd~  434 (502)
                      ......      ......-..|...|-+|+|.++.  +.   .|++++-.|.+.+|++
T Consensus       194 f~l~~~------r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDE------RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             Eecccc------ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            554211      01111122366778899998753  22   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.10  E-value=10  Score=35.39  Aligned_cols=219  Identities=12%  Similarity=0.136  Sum_probs=117.1

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCC------CC-eeeEeecc-----CCCCeEEEEEcCCC-----------CcE
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVA------AG-KCNLTLEH-----HTDKVQAVAWNHHS-----------PQI  324 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~------~~-~~~~~~~~-----h~~~v~~l~~~~~~-----------~~~  324 (502)
                      .-+.|+++|. +.+.++....+...+||..      .. ..+.++..     .....+.+.|+...           ...
T Consensus        24 N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            3578999998 4577777777899999986      12 22334331     23467888887543           134


Q ss_pred             EEEEeCCCcEEEEecCCCCC---cc-ceEe--ecCCe-eEEEeCC--CCCCEEEEEeCCCcEEEEECCCCCCCCC-----
Q 010748          325 LLSGSFDRSVVMKDARISTH---SG-FKWA--VAADV-ESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPD-----  390 (502)
Q Consensus       325 l~s~s~dg~i~iwd~~~~~~---~~-~~~~--~~~~v-~~v~~~~--~~~~~~~~~~~dg~v~i~d~~~~~~~~~-----  390 (502)
                      ++.++.+|+|.-|...-...   .. ....  ..+.| ..+++..  .+..+.++--..++|.+||-.-......     
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            67889999999998543222   11 1111  11222 2344432  2344445556788999998653311000     


Q ss_pred             --CCCCccceEEecc--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcC------C
Q 010748          391 --STSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE------D  460 (502)
Q Consensus       391 --~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp------d  460 (502)
                        ....-..+.+..-  .-.|+-..-.+.. +.=+.|..-|.|-+||+...- .......+.-..-+.|+..|      .
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l-~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQL-LRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcE-EEEeccCCcccCCceeeeChhhhCCCC
Confidence              0000000000000  0011111222222 223334445789999987542 22222333444566777755      3


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748          461 SPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       461 ~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      +. +|+---.||+|.+||..++..+..+..
T Consensus       261 g~-lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       261 GA-LLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CC-eEEeecCCceeEEecCCCCceeeeecC
Confidence            45 566555699999999998887655544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.06  E-value=9.7  Score=34.99  Aligned_cols=185  Identities=14%  Similarity=0.132  Sum_probs=96.8

Q ss_pred             CCCcceeeeecCCCCCCCCCCEEEEecCCC--cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc
Q 010748          190 PAFPLCMAWLDCPLKDREKGNFMAVGSMEP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD  267 (502)
Q Consensus       190 ~~~~~~~~~~~~~~~~s~~~~~la~g~~dg--~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  267 (502)
                      .+|.-.+.+.       .+|.++-+.+.-|  .|+.+|+.++.......+-                     ..  ..  
T Consensus        44 ~aFTQGL~~~-------~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~---------------------~~--~F--   91 (264)
T PF05096_consen   44 TAFTQGLEFL-------DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP---------------------PR--YF--   91 (264)
T ss_dssp             T-EEEEEEEE-------ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T---------------------TT------
T ss_pred             cccCccEEec-------CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC---------------------cc--cc--
Confidence            4455566653       4677777776665  7999999876543221110                     00  01  


Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                       --.++...+  .+..-.-.++...+||..+.+.+.++.. .+.=..|+  .++ ..|+.+.....|.++|..+.+....
T Consensus        92 -gEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~  164 (264)
T PF05096_consen   92 -GEGITILGD--KLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRT  164 (264)
T ss_dssp             -EEEEEEETT--EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEE
T ss_pred             -ceeEEEECC--EEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCC-CEEEEECCccceEEECCcccceEEE
Confidence             112233332  3444455678899999999999988863 45566776  344 4577777788899999876654332


Q ss_pred             eEee-----cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE---------------eccCCCe
Q 010748          348 KWAV-----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---------------HAHDKAV  407 (502)
Q Consensus       348 ~~~~-----~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~---------------~~h~~~v  407 (502)
                      ..-.     -..++-+.|..  +.+.+=.-....|...|..++.         ....+               .....-.
T Consensus       165 i~V~~~g~pv~~LNELE~i~--G~IyANVW~td~I~~Idp~tG~---------V~~~iDls~L~~~~~~~~~~~~~~dVL  233 (264)
T PF05096_consen  165 IQVTDNGRPVSNLNELEYIN--GKIYANVWQTDRIVRIDPETGK---------VVGWIDLSGLRPEVGRDKSRQPDDDVL  233 (264)
T ss_dssp             EE-EETTEE---EEEEEEET--TEEEEEETTSSEEEEEETTT-B---------EEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred             EEEEECCEECCCcEeEEEEc--CEEEEEeCCCCeEEEEeCCCCe---------EEEEEEhhHhhhcccccccccccCCee
Confidence            2111     12244455542  2222223334445555555541         11111               0113568


Q ss_pred             eEEEEcCCCCCEEEEEe
Q 010748          408 CTISYNPLVPNLLATGS  424 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s  424 (502)
                      +.|++.|....+++||=
T Consensus       234 NGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  234 NGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             EeEeEeCCCCEEEEEeC
Confidence            99999998867777763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.99  E-value=13  Score=36.29  Aligned_cols=198  Identities=13%  Similarity=0.144  Sum_probs=109.9

Q ss_pred             CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcC----CCCcE-EEEEe-CC---CcEEEEecCCCCCccceE
Q 010748          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH----HSPQI-LLSGS-FD---RSVVMKDARISTHSGFKW  349 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~-l~s~s-~d---g~i~iwd~~~~~~~~~~~  349 (502)
                      ..+++.....+-+.+||+. |+.+..+.  .+.+..+....    .+... |++++ .+   .+|++|-+..........
T Consensus        68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            4578888888899999986 56666664  23444443321    22121 33333 32   469999876322111111


Q ss_pred             --------eecCCeeEEEe--CC-CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          350 --------AVAADVESLAW--DP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       350 --------~~~~~v~~v~~--~~-~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                              .....+..+|+  ++ .+..++++...+|.+..|-+.......  .....++.+.. .+.+-.+...... .
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~--v~~~lVR~f~~-~sQ~EGCVVDDe~-g  220 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK--VSATLVREFKV-GSQPEGCVVDDET-G  220 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS--EEEEEEEEEE--SS-EEEEEEETTT-T
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc--EeeEEEEEecC-CCcceEEEEeccc-C
Confidence                    11123555655  44 345577778899999888886321100  00245666654 3467888888766 7


Q ss_pred             EEEEEeCCCcEEEEECCCC---CeeEEEEecC--CCCcEEEEEEc--CCC-CcEEEEEeCCCcEEEEECCCCc
Q 010748          419 LLATGSTDKMVKLWDLSNN---QPSCIASRNP--KAGAVFSVAFS--EDS-PFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~---~~~~~~~~~~--~~~~v~~~~~s--pd~-~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .|+.+-.+.-|.-|+....   ....+....+  ....|-.|++-  +++ .|||++.-.+++..||+.....
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~  293 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN  293 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred             CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence            8999988887888887632   2223333322  34567777764  343 5788887778899999987643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN02153 epithiospecifier protein

Probab=91.96  E-value=7.3  Score=37.79  Aligned_cols=54  Identities=11%  Similarity=0.135  Sum_probs=28.8

Q ss_pred             CcEEEEECCCCCeeEEEEe---cCCCCcEEEEEEcCCCCcEEEEEeCC--------------CcEEEEECCCCc
Q 010748          427 KMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIWDTLSDA  483 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~spd~~~ll~sg~~d--------------g~i~vwd~~~~~  483 (502)
                      ..|.+||+.+.+...+...   ........++.+  ++. +++.||..              ..|..+|+.+..
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--GKY-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeeeEEE--CCE-EEEECcccCCccccccccccccccEEEEEcCccE
Confidence            4588999988775444321   111111122222  343 78888852              257788876543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.93  E-value=7.8  Score=40.50  Aligned_cols=181  Identities=12%  Similarity=0.113  Sum_probs=92.9

Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE---eecCC-eeEEEeC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAAD-VESLAWD  361 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~-v~~v~~~  361 (502)
                      +.--.|+|+++ +|+.+.++.-....+-.+.|+.+.  -|++...+|++++|++-.........   ..... +.|-.|+
T Consensus        61 ~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~  137 (829)
T KOG2280|consen   61 SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH  137 (829)
T ss_pred             ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec
Confidence            33456888885 577766665444588899999876  68888999999999987544322111   11222 3444444


Q ss_pred             CCCCCEEEEEeCCCcEEEE-ECCCCCCCCCCCCCccceEEec---cCCCeeEEEEcCCC--CCEEEEEe-CCCcEEEEEC
Q 010748          362 PHAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLV--PNLLATGS-TDKMVKLWDL  434 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~-d~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~sp~~--~~~l~t~s-~dg~i~vwd~  434 (502)
                       + +  +++-..+|.+.+- +....          ..+++..   ..-+-+|-...+.+  ...++-.. ..+ ..++-.
T Consensus       138 -~-G--Vavlt~~g~v~~i~~~~~~----------~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~  202 (829)
T KOG2280|consen  138 -N-G--VAVLTVSGQVILINGVEEP----------KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQV  202 (829)
T ss_pred             -C-c--eEEEecCCcEEEEcCCCcc----------hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccce
Confidence             2 3  4444455555443 33221          1111111   01111121111111  01111111 111 112222


Q ss_pred             CCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          435 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       435 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      ..... ....+....+.+..+..||++++ ||--...|.|.+-++...+.+.
T Consensus       203 ~~~~~-q~~~~~~~~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~~~lc  252 (829)
T KOG2280|consen  203 EESRV-QLHALSWPNSSVVKISVSPNRRF-LALYTETGKIWVVSIDLSQILC  252 (829)
T ss_pred             ecccc-cccccCCCCceEEEEEEcCCcce-EEEEecCCcEEEEecchhhhhh
Confidence            22111 12222222466888999999996 8888889999888876655543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.80  E-value=12  Score=35.36  Aligned_cols=176  Identities=9%  Similarity=0.068  Sum_probs=93.3

Q ss_pred             cEEEEeCCCCeeeEeecc------CCCCeEEEEEcCCCC-----cEEEEEeCCCcEEEEecCCCCCccc-----------
Q 010748          290 QVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSP-----QILLSGSFDRSVVMKDARISTHSGF-----------  347 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~-----------  347 (502)
                      .|.+||+.+++.++++.-      ..+.+..+.+.....     ...++=+..+.|.++|+.+++....           
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            688999999998887742      235677777766331     2334444456899999987653221           


Q ss_pred             --------eEeecCCeeEEEeCC---CCCCEEEEEeCCC-cEEEEECCCCCCCCCCCC---CccceEEeccCCCeeEEEE
Q 010748          348 --------KWAVAADVESLAWDP---HAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTS---QQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       348 --------~~~~~~~v~~v~~~~---~~~~~~~~~~~dg-~v~i~d~~~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~  412 (502)
                              .+.....+..++.+|   ++ ..++-+.-.+ .++--.............   ...+..+.........+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                    112233456666655   33 2444443322 232222211110000000   0112222222246778889


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCC----CCeeEEEEecCCCCcEEEEEEcC--CCCcEEEEE
Q 010748          413 NPLVPNLLATGSTDKMVKLWDLSN----NQPSCIASRNPKAGAVFSVAFSE--DSPFVLAIG  468 (502)
Q Consensus       413 sp~~~~~l~t~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~v~~~~~sp--d~~~ll~sg  468 (502)
                      ++.| .++++--..+.|..|+...    .....+..-......+..+.+.+  ++. |.+.+
T Consensus       194 D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s  253 (287)
T PF03022_consen  194 DPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS  253 (287)
T ss_dssp             ETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred             CCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEE
Confidence            9977 8888888899999999987    22223333332256789999999  776 44443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.72  E-value=15  Score=36.42  Aligned_cols=153  Identities=10%  Similarity=0.102  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 010748          312 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS  391 (502)
Q Consensus       312 v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~  391 (502)
                      ...+..++++ .+++.+..-..++-||--...=..........+..+.|.+++. +++ .+..|.+.. ....+....  
T Consensus       241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l-~g~~G~l~~-S~d~G~~~~--  314 (398)
T PLN00033        241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWL-LTRGGGLYV-SKGTGLTEE--  314 (398)
T ss_pred             eeeEEEcCCC-CEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEE-EeCCceEEE-ecCCCCccc--
Confidence            3444556665 4444444333233333221100111223355688899988765 444 445666543 222221000  


Q ss_pred             CCCccceEEec--cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEE
Q 010748          392 TSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       392 ~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg  468 (502)
                        .........  ....+..+.|.+++ . ++.++..|.+.... ..++. ........-...++.+.|.+++. .++ .
T Consensus       315 --~~~f~~~~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~-~  387 (398)
T PLN00033        315 --DFDFEEADIKSRGFGILDVGYRSKK-E-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFV-L  387 (398)
T ss_pred             --ccceeecccCCCCcceEEEEEcCCC-c-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEE-E
Confidence              001111111  22358889898765 4 55566678666654 33332 12211233346788999988776 354 5


Q ss_pred             eCCCcEEEE
Q 010748          469 GSKGKLEIW  477 (502)
Q Consensus       469 ~~dg~i~vw  477 (502)
                      |.+|.|.-|
T Consensus       388 G~~G~il~~  396 (398)
T PLN00033        388 GNDGVLLRY  396 (398)
T ss_pred             eCCcEEEEe
Confidence            678877655

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.60  E-value=11  Score=34.84  Aligned_cols=153  Identities=13%  Similarity=0.123  Sum_probs=96.4

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc-CC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-h~-~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      .+-+..+.++.+   +...+..+.-++|.|+.+...-..+.. .. +--.++..  .| +++.++..+.-+.+.|+..++
T Consensus        86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sG-n~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SG-NYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cC-CEEEEeeccCcEEEEECCCCC
Confidence            456777888765   677777778899999987643332211 12 33344444  44 788888878888899998877


Q ss_pred             CccceEee---cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC-CeeEEEEcCCCCCE
Q 010748          344 HSGFKWAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNL  419 (502)
Q Consensus       344 ~~~~~~~~---~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~~~~  419 (502)
                      .+...-..   ......++.+-   ++.+++..++-+.+.|+...        ..+++.-.-..+ .+.++..+++. .+
T Consensus       160 sP~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp--------~sPvli~~~n~g~g~~sv~vsdnr-~y  227 (370)
T COG5276         160 SPQLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNP--------HSPVLIGSYNTGPGTYSVSVSDNR-AY  227 (370)
T ss_pred             CceeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCC--------CCCeEEEEEecCCceEEEEecCCe-eE
Confidence            65533222   22335666653   36777888999999999987        345544443344 78888888753 33


Q ss_pred             EEEEeCCCcEEEEECCCCC
Q 010748          420 LATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~  438 (502)
                      ++. ...| +.+-|..+.+
T Consensus       228 ~vv-y~eg-vlivd~s~~s  244 (370)
T COG5276         228 LVV-YDEG-VLIVDVSGPS  244 (370)
T ss_pred             EEE-cccc-eEEEecCCCC
Confidence            333 3333 5566665543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.14  E-value=15  Score=35.31  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=15.7

Q ss_pred             CEEEEEeCCCc----EEEEECCCCCee
Q 010748          418 NLLATGSTDKM----VKLWDLSNNQPS  440 (502)
Q Consensus       418 ~~l~t~s~dg~----i~vwd~~~~~~~  440 (502)
                      .+.+.|+.++.    +.+||+.+.+..
T Consensus       173 ~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       173 ELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             EEEEEcCCCCccccceEEEecCCCeeE
Confidence            67777776543    568898887643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.06  E-value=11  Score=36.90  Aligned_cols=149  Identities=7%  Similarity=0.029  Sum_probs=73.0

Q ss_pred             CCeEEEEEcCCCCcEEEEEe-----------CCC-cEEEEecCCCCCc----cceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          310 DKVQAVAWNHHSPQILLSGS-----------FDR-SVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       310 ~~v~~l~~~~~~~~~l~s~s-----------~dg-~i~iwd~~~~~~~----~~~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      .....|+|.++| +++++-.           ..+ .|.+++-....-.    ......-...+.+++.+++   ++++..
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVATP   89 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEeCC
Confidence            455678888888 6555532           123 6666654332211    1111223345788888754   444444


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceE-Eec----cCCCeeEEEEcCCCCCEEEEEeCC-------------------CcE
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFT-LHA----HDKAVCTISYNPLVPNLLATGSTD-------------------KMV  429 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~----h~~~v~~l~~sp~~~~~l~t~s~d-------------------g~i  429 (502)
                      ....++.|........ . ....+.. +..    +......+.|.|+| .+.++-+..                   |.|
T Consensus        90 ~~i~~~~d~~gdg~ad-~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        90 PDILFLRDKDGDDKAD-G-EREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             CeEEEEeCCCCCCCCC-C-ccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceE
Confidence            4333333443221000 0 0111211 222    23457889999998 555544411                   345


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~  469 (502)
                      .-++...++.. +. ..++ .....++|+|+|. ++++-.
T Consensus       167 ~r~~pdg~~~e-~~-a~G~-rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       167 FRYNPDGGKLR-VV-AHGF-QNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             EEEecCCCeEE-EE-ecCc-CCCccceECCCCC-EEEEcc
Confidence            55555554421 11 1222 3356899999998 465433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.71  E-value=3.6  Score=37.01  Aligned_cols=86  Identities=9%  Similarity=0.020  Sum_probs=55.0

Q ss_pred             EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-----eccCCCeeEEEEcCCCCCEEEEE
Q 010748          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .....++..+...  + .++++-+.+|.+++||+.+.+......+..++...     ......|..+.++.+| .-|++-
T Consensus         9 i~Lgs~~~~l~~~--~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l   84 (219)
T PF07569_consen    9 IVLGSPVSFLECN--G-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTL   84 (219)
T ss_pred             EecCCceEEEEeC--C-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEE
Confidence            3444555555543  3 37888999999999999987543222111111111     0356778999999877 666665


Q ss_pred             eCCCcEEEEECCCCCe
Q 010748          424 STDKMVKLWDLSNNQP  439 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~  439 (502)
                      + +|..+.|+..-+..
T Consensus        85 s-ng~~y~y~~~L~~W   99 (219)
T PF07569_consen   85 S-NGDSYSYSPDLGCW   99 (219)
T ss_pred             e-CCCEEEecccccee
Confidence            5 57889998876654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN02153 epithiospecifier protein

Probab=90.65  E-value=17  Score=35.20  Aligned_cols=22  Identities=9%  Similarity=0.185  Sum_probs=14.4

Q ss_pred             CcEEEEEecC-----CcEEEEeCCCCe
Q 010748          279 RNILASASAD-----KQVKIWDVAAGK  300 (502)
Q Consensus       279 ~~~l~sgs~d-----g~v~vwd~~~~~  300 (502)
                      ..+++.|+.+     ..+.+||+.+.+
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCE
Confidence            4466677653     357889987754

>PLN02193 nitrile-specifier protein

Probab=90.28  E-value=9.7  Score=38.83  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=35.3

Q ss_pred             CEEEEEeCC----CcEEEEECCCCCeeEEEEec--CCCCcEEEEEEcCCCCcEEEEEeCC--------------CcEEEE
Q 010748          418 NLLATGSTD----KMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIW  477 (502)
Q Consensus       418 ~~l~t~s~d----g~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~ll~sg~~d--------------g~i~vw  477 (502)
                      .+++.++.+    ..+.+||+.+.+...+....  .......+++. -++. +++.||..              ..+.+|
T Consensus       330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~~  407 (470)
T PLN02193        330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKH-IVIFGGEIAMDPLAHVGPGQLTDGTFAL  407 (470)
T ss_pred             cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCE-EEEECCccCCccccccCccceeccEEEE
Confidence            666666655    45899999887754443221  11111122222 2344 77788853              247888


Q ss_pred             ECCCCc
Q 010748          478 DTLSDA  483 (502)
Q Consensus       478 d~~~~~  483 (502)
                      |+.+..
T Consensus       408 D~~t~~  413 (470)
T PLN02193        408 DTETLQ  413 (470)
T ss_pred             EcCcCE
Confidence            887653

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.25  E-value=8.6  Score=31.15  Aligned_cols=110  Identities=18%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCCCCe--------eeEeeccCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEec
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVAAGK--------CNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~--------~~~~~~~h~~~v~~l~~~~~----~~~~l~s~s~dg~i~iwd~  339 (502)
                      -.|....+ .|++++.-|.|.|++.....        .++.+. ....|++|+-.+-    +...|+.|+ ...|..||+
T Consensus         4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            34555533 67788888999999876432        334443 4667888765442    235566655 567999999


Q ss_pred             CCCCCccceEeecCCeeEEEeCCCC--CCEEEEEeCCCcEEEEECCCC
Q 010748          340 RISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~~dg~v~i~d~~~~  385 (502)
                      ....-.. ....+..+.++.+-.-+  ..-++..+.+..|.-||....
T Consensus        81 ~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   81 ENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             ccCchhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            8766443 34455677777662211  123444444667777776543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=90.25  E-value=20  Score=35.32  Aligned_cols=50  Identities=18%  Similarity=0.169  Sum_probs=24.3

Q ss_pred             EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC------cEEEEECCC
Q 010748          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLS  481 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg------~i~vwd~~~  481 (502)
                      +.+||+.+.+...+..+.......  .+..-++. ++++||...      .|.++....
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~--~av~~~~~-iyv~GG~~~~~~~~~~v~~~~~~~  369 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYG--VSVSWNNG-VLLIGGETAGGKAVSDVTLLSWDG  369 (376)
T ss_pred             hheEEecCCcccccCcCCCCccce--EEEEeCCE-EEEEcCCCCCCcEeeeEEEEEEcC
Confidence            457888876643332222111112  22333444 677787642      455555444

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=90.06  E-value=19  Score=34.88  Aligned_cols=41  Identities=24%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d  471 (502)
                      .+.+||..+.+...+..+...  .-...+..-++. +++.||.+
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~~--~~~~~~~~~~~~-iyv~GG~~  331 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQG--LAYGVSVSWNNG-VLLIGGEN  331 (346)
T ss_pred             EeeEEEecCCcccccCCCCCC--ceeeEEEEcCCE-EEEEeccC
Confidence            467888877654333322211  112223333454 67778765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.54  E-value=13  Score=41.52  Aligned_cols=154  Identities=12%  Similarity=0.141  Sum_probs=86.9

Q ss_pred             EeCCCcEEEEecCCCCCccceEeecCCeeEEEe--------CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE
Q 010748          328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAW--------DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~--------~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                      .+.|+.+.+|+..+.......-.....|..|..        .|.=.+++++++ --.|.++-+.-.............++
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccccccee
Confidence            345889999999986555444455555555543        232233444443 33455554432211111111122244


Q ss_pred             EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE--ECCCC-------C------------eeEEEEec-CCCCcEEEEEE
Q 010748          400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW--DLSNN-------Q------------PSCIASRN-PKAGAVFSVAF  457 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw--d~~~~-------~------------~~~~~~~~-~~~~~v~~~~~  457 (502)
                      +......|+++....+| +.+++ |.||.|+=.  ....+       +            |. +..+. .+..+|..+..
T Consensus       174 i~~dg~~V~~I~~t~nG-RIF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~I  250 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENG-RIFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITI  250 (1311)
T ss_pred             eecCCceEEEEEeccCC-cEEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEe
Confidence            44556678899876666 55555 456644321  11111       0            11 22223 56679999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          458 SEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       458 spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      ..... +|.+-+..|+|.+|++.......
T Consensus       251 D~SR~-IlY~lsek~~v~~Y~i~~~G~~~  278 (1311)
T KOG1900|consen  251 DNSRN-ILYVLSEKGTVSAYDIGGNGLGG  278 (1311)
T ss_pred             ccccc-eeeeeccCceEEEEEccCCCccc
Confidence            88776 79999999999999998844433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.38  E-value=2  Score=44.89  Aligned_cols=96  Identities=16%  Similarity=0.180  Sum_probs=46.5

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCC---CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEecc---CCCc
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVID---EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRN  280 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~  280 (502)
                      ++...|+++..||.+.........   ........+........    .+-..........-...+..++++.   ++..
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSL----SGLFPWSYRGDNSSSSVAASLAVSSSEINDDT  231 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCC----TTTS-TT---SSSS---EEEEEE-----ETTT
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhh----hCcCCcccccCCCCCCccceEEEecceeCCCC
Confidence            367788888999999888876522   11111111100000000    0000000000111234455555555   2367


Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEeec
Q 010748          281 ILASASADKQVKIWDVAAGKCNLTLE  306 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~~~~  306 (502)
                      +|++.+.|+++|+||+.+++++.++.
T Consensus       232 ~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  232 FLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCeEEEEec
Confidence            99999999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.96  E-value=2.5  Score=37.97  Aligned_cols=78  Identities=14%  Similarity=0.181  Sum_probs=47.9

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ..+++|++-+.+|.+++||+.....+.+...+...-.            ... ..-......|..+.++.+|. -|++-+
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~------------~~~-~~~~~~~~~i~~~~lt~~G~-PiV~ls   85 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLN------------SSP-VSDKSSSPNITSCSLTSNGV-PIVTLS   85 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhc------------ccc-cccCCCCCcEEEEEEcCCCC-EEEEEe
Confidence            3688999999999999999987665544311110000            000 00004567788899987743 454444


Q ss_pred             cCCcEEEEeCCCC
Q 010748          287 ADKQVKIWDVAAG  299 (502)
Q Consensus       287 ~dg~v~vwd~~~~  299 (502)
                       +|..+.|+..-+
T Consensus        86 -ng~~y~y~~~L~   97 (219)
T PF07569_consen   86 -NGDSYSYSPDLG   97 (219)
T ss_pred             -CCCEEEeccccc
Confidence             578899986543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.94  E-value=11  Score=30.55  Aligned_cols=120  Identities=12%  Similarity=0.157  Sum_probs=69.6

Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC----CCCEEEEEeCCCcEEEE
Q 010748          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL----VPNLLATGSTDKMVKLW  432 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~t~s~dg~i~vw  432 (502)
                      .-.|....+ .|++++.-|.|.+++.......... ....+..+ .-...|++++-.+-    ....|+.|+. ..+..|
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaY   78 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY   78 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence            345666555 6888888999999987654321110 01223333 34566777765542    3356777665 569999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEc---C-CCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFS---E-DSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~s---p-d~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      |+..+.-  ++....+ ..|.++.+-   . ..+ +++ .|.+..|.-||....+..
T Consensus        79 DV~~N~d--~Fyke~~-DGvn~i~~g~~~~~~~~-l~i-vGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   79 DVENNSD--LFYKEVP-DGVNAIVIGKLGDIPSP-LVI-VGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             EcccCch--hhhhhCc-cceeEEEEEecCCCCCc-EEE-ECceEEEEEeCCCCcEEE
Confidence            9988763  3333322 446666652   2 234 344 455667877776655543

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.86  E-value=25  Score=38.31  Aligned_cols=69  Identities=16%  Similarity=0.021  Sum_probs=48.2

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee----c-----------c----CCCCeEEEEEcCCCCcEE
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL----E-----------H----HTDKVQAVAWNHHSPQIL  325 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~----~-----------~----h~~~v~~l~~~~~~~~~l  325 (502)
                      ....|.++....- +.+++.+-.||+|.++|-.+.+.+...    .           |    +-..+..++|+|.+ ..+
T Consensus       258 ~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~  335 (753)
T PF11635_consen  258 LNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSL  335 (753)
T ss_pred             cCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceE
Confidence            3466888887766 558999999999999998766443322    0           0    11234457899998 777


Q ss_pred             EEEeCCCcEE
Q 010748          326 LSGSFDRSVV  335 (502)
Q Consensus       326 ~s~s~dg~i~  335 (502)
                      +.-..+|.+.
T Consensus       336 v~~~~~~~~~  345 (753)
T PF11635_consen  336 VQIDEDGKTK  345 (753)
T ss_pred             EEEecCCCce
Confidence            7888888765

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.86  E-value=13  Score=35.59  Aligned_cols=104  Identities=7%  Similarity=0.055  Sum_probs=47.0

Q ss_pred             CcEEEEEecC-----CcEEEEeCCCCee---eEeeccCCCCe--EEEEEcCCCCcEEEEEeC-----CCcEEEEecCCCC
Q 010748          279 RNILASASAD-----KQVKIWDVAAGKC---NLTLEHHTDKV--QAVAWNHHSPQILLSGSF-----DRSVVMKDARIST  343 (502)
Q Consensus       279 ~~~l~sgs~d-----g~v~vwd~~~~~~---~~~~~~h~~~v--~~l~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~  343 (502)
                      ..+++.|+.+     ..+..+|+.+.+.   ...+..-..+.  .+++.. ++ .+.+.|+.     ...+..||+.+.+
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCC
Confidence            3466667654     3566777766543   12221111111  122222 23 56666664     2357788877643


Q ss_pred             Cccce-EeecCCeeEEEeCCCCCCEEEEEeCCC----cEEEEECCCC
Q 010748          344 HSGFK-WAVAADVESLAWDPHAEHSFVVSLEDG----TIKGFDIRTA  385 (502)
Q Consensus       344 ~~~~~-~~~~~~v~~v~~~~~~~~~~~~~~~dg----~v~i~d~~~~  385 (502)
                      =.... ..........+... +..+++.|+.++    .+.+||..+.
T Consensus       151 W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             eeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCC
Confidence            21110 01001111111111 234677776554    2567887764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.85  E-value=12  Score=36.71  Aligned_cols=145  Identities=6%  Similarity=0.058  Sum_probs=86.3

Q ss_pred             EeCCCcEEEEecCCCCC---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC
Q 010748          328 GSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  404 (502)
Q Consensus       328 ~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~  404 (502)
                      +...|.+.-|-+..+..   +..-....++|.++.|++++. .+++-..+..|.+++.......     .......+..+
T Consensus        39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~-----l~~~~~ck~k~  112 (657)
T KOG2377|consen   39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ-----LEYTQECKTKN  112 (657)
T ss_pred             EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh-----hHHHHHhccCc
Confidence            33445555555544332   222223467899999999865 8899999999999998543110     11222233345


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCC
Q 010748          405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSD  482 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~-~dg~i~vwd~~~~  482 (502)
                      ..|.++.|+.+.  -+|..+..| +-+|-+...+. .+.....|...|.-..|+++.+.+|.+.+ ..+++.=+-++++
T Consensus       113 ~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~pekr-slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  113 ANILGFCWTSST--EIAFITDQG-IEFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             ceeEEEEEecCe--eEEEEecCC-eEEEEEchhhh-hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            568899998753  455555444 77776654331 23344556667888889998875555544 3344444444443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.42  E-value=3.7  Score=35.35  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=26.8

Q ss_pred             cceeeEEeccCC-----CcEEEEEecCCcEEEEeCCC
Q 010748          267 DSVLGLAWNKEF-----RNILASASADKQVKIWDVAA  298 (502)
Q Consensus       267 ~~V~~l~~~~~~-----~~~l~sgs~dg~v~vwd~~~  298 (502)
                      ..|..++|||.|     +.+||+.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            379999999953     56899999999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.23  E-value=43  Score=36.41  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=42.0

Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeE-------------EEEEcC--CCCcEEEEEeC----------CCcE
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-------------AVAWNH--HSPQILLSGSF----------DRSV  334 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~--~~~~~l~s~s~----------dg~i  334 (502)
                      ..++.++.|+.|.-.|..+|+.+..+.. .+.|.             .+.-.|  .+ ..+++|+.          +|.|
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEE
Confidence            3788889999999999999998877642 22221             011111  12 35666643          6889


Q ss_pred             EEEecCCCCCc
Q 010748          335 VMKDARISTHS  345 (502)
Q Consensus       335 ~iwd~~~~~~~  345 (502)
                      +-+|.++++..
T Consensus       339 ~A~Da~TGkl~  349 (764)
T TIGR03074       339 RAFDVNTGALV  349 (764)
T ss_pred             EEEECCCCcEe
Confidence            99999987753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.16  E-value=2.6  Score=25.72  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=22.9

Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEE
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIW  477 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~~d--g~i~vw  477 (502)
                      ...+.-....|+|||++++.++...  |...||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445678899999999888887777  777776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PLN02193 nitrile-specifier protein

Probab=87.69  E-value=35  Score=34.82  Aligned_cols=102  Identities=9%  Similarity=0.093  Sum_probs=48.0

Q ss_pred             CcEEEEEecC-----CcEEEEeCCCCeeeE--eec--cCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEecCCCCC
Q 010748          279 RNILASASAD-----KQVKIWDVAAGKCNL--TLE--HHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTH  344 (502)
Q Consensus       279 ~~~l~sgs~d-----g~v~vwd~~~~~~~~--~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~  344 (502)
                      ..+++.|+.+     ..+.+||+.+.+-..  .+.  .....-.++.. -.+ .+++.|+.++     .+..||+.+.+-
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCEE
Confidence            3466666654     358889988764322  111  01111112222 233 6777777653     356677665321


Q ss_pred             ccce-----EeecCCeeEEEeCCCCCCEEEEEeCC----CcEEEEECCCC
Q 010748          345 SGFK-----WAVAADVESLAWDPHAEHSFVVSLED----GTIKGFDIRTA  385 (502)
Q Consensus       345 ~~~~-----~~~~~~v~~v~~~~~~~~~~~~~~~d----g~v~i~d~~~~  385 (502)
                      ....     .........+.+  . ..+++.++.+    ..+.+||+.+.
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~~--~-gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEVV--Q-GKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEEE--C-CcEEEEECCCCCccCceEEEECCCC
Confidence            1100     000111122222  2 3366666544    45888998764

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=87.60  E-value=26  Score=33.28  Aligned_cols=242  Identities=15%  Similarity=0.068  Sum_probs=113.8

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +++|+.|+.+|...+. +.... ..+                          ....+...|+++...+...-+++.++..
T Consensus        13 ~~~lL~GTe~Gly~~~-~~~~~-~~~--------------------------~kl~~~~~v~q~~v~~~~~lLi~Lsgk~   64 (302)
T smart00036       13 GKWLLVGTEEGLYVLN-ISDQP-GTL--------------------------EKLIGRRSVTQIWVLEENNVLLMISGKK   64 (302)
T ss_pred             CcEEEEEeCCceEEEE-cccCC-CCe--------------------------EEecCcCceEEEEEEhhhCEEEEEeCCc
Confidence            4799999999866554 54210 001                          1113567899999998844334444444


Q ss_pred             CcEEEEeCCCCee---------------eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC--CCccce---
Q 010748          289 KQVKIWDVAAGKC---------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFK---  348 (502)
Q Consensus       289 g~v~vwd~~~~~~---------------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~---  348 (502)
                      ..++++++..-..               ....-.|................++++....+|.++....+  +.....   
T Consensus        65 ~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~  144 (302)
T smart00036       65 PQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKF  144 (302)
T ss_pred             ceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccc
Confidence            4599999843221               01122344434444444333245566666777777654332  111110   


Q ss_pred             ---EeecCCeeEEEeCCC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEE
Q 010748          349 ---WAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       349 ---~~~~~~v~~v~~~~~-~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~  423 (502)
                         .....++..+..+++ ....+.+|+..+...++++.........  ....+...... .++..+.+.. + .+|++ 
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d--~sl~~~~~~~~~~p~~i~~l~~-~-e~Llc-  219 (302)
T smart00036      145 LFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED--LSLPFLSEETSLKPISVVQVPR-D-EFLLC-  219 (302)
T ss_pred             cccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc--ccccccccccccCceEEEEECC-C-eEEEE-
Confidence               011223333322332 1235666766433444444321000000  00001111111 4555555543 3 44443 


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      - +....+-|....+......+. -.+...++++..  +|+++. + +..|.|+++.++..++.+-
T Consensus       220 ~-~~~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~~--pyll~~-~-~~~ievr~l~~~~l~q~i~  279 (302)
T smart00036      220 Y-DEFGVFVNLYGKRRSRNPILH-WEFMPESFAYHS--PYLLAF-H-DNGIEIRSIKTGELLQELA  279 (302)
T ss_pred             E-CcEEEEEeCCCCccccceEEE-cCCcccEEEEEC--CEEEEE-c-CCcEEEEECCCCceEEEEe
Confidence            3 333555565541211111221 234456777764  566664 3 4569999999998765543

Unpublished observations.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.54  E-value=48  Score=36.24  Aligned_cols=122  Identities=16%  Similarity=0.154  Sum_probs=75.0

Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC----------CCeeEEEEcCCCCCEEE
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD----------KAVCTISYNPLVPNLLA  421 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~l~~sp~~~~~l~  421 (502)
                      ..+...++|+|.....|++....|...||++.......    ...+.....+.          ..-..+.|.++. ..|+
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~----~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lL  219 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRK----SSNLRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLL  219 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccC----CcceeeccCCCccccCCCcccCcceeeEecCCC-CEEE
Confidence            34577899999888899999999999999992221100    00111111111          233478898876 5555


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEECCC
Q 010748          422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~ll~sg~~dg~i~vwd~~~  481 (502)
                      .++. ..+.++|+.+...............|..+.-+|..+ ++|+.  ....|...++..
T Consensus       220 v~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~  277 (765)
T PF10214_consen  220 VCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS  277 (765)
T ss_pred             EEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence            5554 458999998876423222333456788888888722 23332  224688888877

These proteins are found in fungi.

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar

Probab=87.49  E-value=0.29  Score=53.26  Aligned_cols=15  Identities=0%  Similarity=0.091  Sum_probs=9.2

Q ss_pred             CCCCHHHHHHHHhccc
Q 010748           21 EPPSKEEIEEIINSGA   36 (502)
Q Consensus        21 ~~~~~~~~~~~~~~~~   36 (502)
                      .+ +++.|+.|+.-..
T Consensus       619 ~~-t~~~l~~ll~vl~  633 (784)
T PF04931_consen  619 HL-TESGLQLLLDVLD  633 (784)
T ss_pred             hc-CHHHHHHHHHHhc
Confidence            35 6777777665543

The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=87.18  E-value=43  Score=35.27  Aligned_cols=168  Identities=14%  Similarity=0.093  Sum_probs=86.3

Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc---ceEeecCCeeEEEeCC-----CCCCEEEEEeC-C---C
Q 010748          308 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDP-----HAEHSFVVSLE-D---G  375 (502)
Q Consensus       308 h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~v~~v~~~~-----~~~~~~~~~~~-d---g  375 (502)
                      -.++|-.+.+.+++ ..+++...+|.|.+||........   ....+...+.--+|-+     ++..++++-+. .   -
T Consensus       128 l~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  128 LDDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             cccceEEEEEecCC-CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence            36788999999888 889999999999999993222111   0111111111112222     12334444333 2   2


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEe---ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC---
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA---  449 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~---  449 (502)
                      +.+++.+...        ...+..+.   .+........|+-+. +.|+.- .++.|.+|++...+......+..-.   
T Consensus       207 ~ykL~~l~~~--------~~~~~El~s~~~e~~~~~~s~f~Y~~-G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~  276 (670)
T PF10395_consen  207 SYKLISLSNE--------SSSIFELSSTILENFGLEDSKFCYQF-GKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKE  276 (670)
T ss_pred             EEEEEEeccC--------CcceEEeehheeccCCcccceEEEeC-CEEEEE-eCCEEEEEEcCCceEEEEEEechhhccc
Confidence            4677777222        13333332   222222222222222 333333 6778999999887644444443111   


Q ss_pred             -CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          450 -GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       450 -~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                       ..+.++.--...+ +|.  +.++.|++.|+.-...+.++-
T Consensus       277 ~~~~vSl~~~s~nR-vLL--s~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  277 SDDLVSLKPPSPNR-VLL--SVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             cccceEeecCCCCe-EEE--EcCCEEEEEeehhhhhhhhhh
Confidence             1233333322233 455  356689999997766665444

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.81  E-value=34  Score=33.82  Aligned_cols=115  Identities=10%  Similarity=0.177  Sum_probs=70.4

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeE----eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      ..++|.++.|+++ ...||.--.+++|.+.+....+...    +-+..+..|....|....  -++..+.. -+-+|-+-
T Consensus        65 d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~-G~e~y~v~  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQ-GIEFYQVL  140 (657)
T ss_pred             CCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecC-CeEEEEEc
Confidence            4569999999999 6699999999999999974333222    223345568888998764  34444433 35556544


Q ss_pred             CCCC-ccceEeecCCeeEEEeCCCCCCEEEEEe-CCCcEEEEECC
Q 010748          341 ISTH-SGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIR  383 (502)
Q Consensus       341 ~~~~-~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~dg~v~i~d~~  383 (502)
                      .... ......+...|.-..|++...-.+++.+ ..+.+.=+-++
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~  185 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR  185 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence            3322 2223356667888888887654444444 33333334333

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=86.12  E-value=37  Score=37.80  Aligned_cols=115  Identities=12%  Similarity=0.082  Sum_probs=63.4

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      ..+++|..++=-.  + +|++|.. ..|.||++....-+.-+.--.-++.-....--. ++|+.|..-..|.+.-.....
T Consensus      1095 E~KGtVsavceV~--G-~l~~~~G-qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vk-nlIl~gDV~ksisfl~fqeep 1169 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEVR--G-HLLSSQG-QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVK-NLILAGDVMKSISFLGFQEEP 1169 (1366)
T ss_pred             hcccceEEEEEec--c-EEEEccC-cEEEEEEeccCCcceeeEEeccceeEEehhhhh-hheehhhhhhceEEEEEccCc
Confidence            4567777776443  3 5655543 579999994432211111111222222222223 577777777777776665443


Q ss_pred             CccceEee---cCCeeEEEeCCCCCC-EEEEEeCCCcEEEEECC
Q 010748          344 HSGFKWAV---AADVESLAWDPHAEH-SFVVSLEDGTIKGFDIR  383 (502)
Q Consensus       344 ~~~~~~~~---~~~v~~v~~~~~~~~-~~~~~~~dg~v~i~d~~  383 (502)
                      ........   .-.+.++.|--+|.+ .|+++..+++|++|-..
T Consensus      1170 ~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1170 YRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             eEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence            32222221   234677777666554 47778889998887654

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=85.69  E-value=47  Score=34.26  Aligned_cols=108  Identities=18%  Similarity=0.227  Sum_probs=58.3

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      .....++.+..+|.++...+.....       .......+. ....+++.+..+++.+|+.||.-|.=.++.+.......
T Consensus       220 ~~~~~~lL~~e~G~l~~l~l~~~~~-------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~  292 (504)
T PF10433_consen  220 KDGDRILLQDEDGDLYLLTLDNDGG-------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEV  292 (504)
T ss_dssp             TTSSEEEEEETTSEEEEEEEEEEEE-------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEEEECCC-------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEE
Confidence            3455899999999999888775410       111222222 45567777776433488888875554444444444445


Q ss_pred             EEEecCCCCcEEEEEEcCC----CC------cEEEEEe--CCCcEEEEE
Q 010748          442 IASRNPKAGAVFSVAFSED----SP------FVLAIGG--SKGKLEIWD  478 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd----~~------~ll~sg~--~dg~i~vwd  478 (502)
                      +..+. .-+||..+++.+.    ..      .+++++|  .+|.+++..
T Consensus       293 ~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr  340 (504)
T PF10433_consen  293 LDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR  340 (504)
T ss_dssp             EEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred             EEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence            55554 5688998888532    11      3555554  356777763

...

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.64  E-value=25  Score=31.15  Aligned_cols=102  Identities=13%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             cEEEEEecCCcEEEEeCC--CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC------cEEEE-ecCCC----CCcc
Q 010748          280 NILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMK-DARIS----THSG  346 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg------~i~iw-d~~~~----~~~~  346 (502)
                      ..|+.+...+.|.+|++.  ..+...+|.. -+.|..+.++..| .+|+|--.+.      .+|+| +.+..    ....
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            355555666789999998  3456667764 3789999999999 8888764322      45664 22211    1111


Q ss_pred             ----------------------ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          347 ----------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       347 ----------------------~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~  385 (502)
                                            .......++.+++..|..++ +++|+ ++.+.+|.+...
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEE
Confidence                                  01122446788888887665 55554 567888887654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=85.47  E-value=39  Score=33.16  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCC-------Ceee-Eeecc----CCCCeEEEEEcCCCCcEEEEEe
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA-------GKCN-LTLEH----HTDKVQAVAWNHHSPQILLSGS  329 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-------~~~~-~~~~~----h~~~v~~l~~~~~~~~~l~s~s  329 (502)
                      ...+.|++.++ + +++ ++.....++.+...       .+.+ ..+..    +......+.|.|+| .+.++-+
T Consensus        72 ~~p~Gi~~~~~-G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G  142 (367)
T TIGR02604        72 SMVTGLAVAVG-G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG  142 (367)
T ss_pred             CCccceeEecC-C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence            34678888887 4 444 44444333445431       1112 22322    13447789999998 5544433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.38  E-value=18  Score=40.46  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          413 NPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       413 sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ++.+ ..++++..||.+.+||...++
T Consensus       243 ~~~~-~~~v~~h~Dgs~~fWd~s~g~  267 (993)
T KOG1983|consen  243 SRDG-SHFVSYHTDGSYAFWDVSSGK  267 (993)
T ss_pred             ccCC-ceEEEEEecCCEEeeecCCCc
Confidence            6666 899999999999999998864

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.34  E-value=22  Score=37.34  Aligned_cols=35  Identities=11%  Similarity=0.203  Sum_probs=27.9

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD  175 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~  175 (502)
                      .++.+.+++-+|.+..++.|+.++   ++.+|.|....
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~---si~lfn~~~r~   47 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDG---SIILFNFIPRR   47 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCC---cEEEEeecccc
Confidence            356788999999999999999987   56777775443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.13  E-value=18  Score=40.52  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=24.9

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      .....++|.|. .+++|.|+..|.|+++-..
T Consensus        36 ~~~~~~afD~~-q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPT-QGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccc-cceEEEEEecccEEEeccc
Confidence            35567788888 6799999999999999754

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=85.07  E-value=31  Score=31.76  Aligned_cols=198  Identities=11%  Similarity=0.064  Sum_probs=112.8

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      ..-..++-.|+ +..-+++...+.|--.|..+|+....--+....-..|..-|++. .-++-+.. .|.-.|-++.....
T Consensus        62 ~ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt~  138 (353)
T COG4257          62 SAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVTR  138 (353)
T ss_pred             CCccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCcccceEE
Confidence            34556777888 45788888888888889999987665555566667788888884 33333222 45555554443322


Q ss_pred             ceE---eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEE
Q 010748          347 FKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       347 ~~~---~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t  422 (502)
                      ...   ......+...|.+.|. +.+++. .|.---.|..+          ..+..+... ...-..|+..|+| .+-++
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa~----------~~i~vfpaPqG~gpyGi~atpdG-svwya  205 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPAR----------NVISVFPAPQGGGPYGICATPDG-SVWYA  205 (353)
T ss_pred             eecccccCCCcccceeeCCCcc-EEEeec-cccceecCccc----------CceeeeccCCCCCCcceEECCCC-cEEEE
Confidence            211   2245678889999865 666654 22211111111          222223222 2345678888988 56666


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      .-.++.|-..|..++....+-...........+--+|.++ +-++-...+.+..+|-..
T Consensus       206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~  263 (353)
T COG4257         206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             eccccceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccc
Confidence            5566667777776654323322223223344555566666 455555556666666544

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.47  E-value=25  Score=39.44  Aligned_cols=148  Identities=16%  Similarity=0.199  Sum_probs=84.2

Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEc-CCCC------cEEEEEeCCCcEEEEecCC----CCCcc----ceEe
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSP------QILLSGSFDRSVVMKDARI----STHSG----FKWA  350 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~------~~l~s~s~dg~i~iwd~~~----~~~~~----~~~~  350 (502)
                      +.|+.+.+|+.+++.....+.+.+..|..+..- |.-+      ++++..+.--.|.++-+.-    .....    ....
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            557889999999987777777766667666542 2210      2333333344555554332    11111    1111


Q ss_pred             e-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC-------------CCCccceEEe-ccCCCeeEEEEcCC
Q 010748          351 V-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-------------TSQQSSFTLH-AHDKAVCTISYNPL  415 (502)
Q Consensus       351 ~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~-------------~~~~~~~~~~-~h~~~v~~l~~sp~  415 (502)
                      . +..|.|+....+|. +|+ ++.||.|+-+-..........             .....+..+. .+..+|..+.+...
T Consensus       176 ~dg~~V~~I~~t~nGR-IF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGR-IFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             cCCceEEEEEeccCCc-EEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            2 44688888666553 454 445664443222211110000             0001123333 56779999999886


Q ss_pred             CCCEEEEEeCCCcEEEEECCC
Q 010748          416 VPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      . +++.+-+..|+|.+|++..
T Consensus       254 R-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  254 R-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             c-ceeeeeccCceEEEEEccC
Confidence            5 8999999999999999987

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.20  E-value=44  Score=32.72  Aligned_cols=197  Identities=14%  Similarity=0.127  Sum_probs=105.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc---ccceeeEEeccCCCcE-
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH---TDSVLGLAWNKEFRNI-  281 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~-  281 (502)
                      .|...+++.....+-+.+||++... ++.                          ...+.   -+-...+.+.  ++.+ 
T Consensus        65 dp~kSlIigTdK~~GL~VYdL~Gk~-lq~--------------------------~~~Gr~NNVDvrygf~l~--g~~vD  115 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGGLYVYDLDGKE-LQS--------------------------LPVGRPNNVDVRYGFPLN--GKTVD  115 (381)
T ss_dssp             -GGG-EEEEEETTTEEEEEETTS-E-EEE--------------------------E-SS-EEEEEEEEEEEET--TEEEE
T ss_pred             CcccceEEEEeCCCCEEEEcCCCcE-EEe--------------------------ecCCCcceeeeecceecC--CceEE
Confidence            3556777777888899999997421 111                          00011   1222333332  2222 


Q ss_pred             EEEEec-C---CcEEEEeCC--CCeeeEeecc-------CCCCeEEEEE--cC-CCCcEEEEEeCCCcEEEEecCCCCC-
Q 010748          282 LASASA-D---KQVKIWDVA--AGKCNLTLEH-------HTDKVQAVAW--NH-HSPQILLSGSFDRSVVMKDARISTH-  344 (502)
Q Consensus       282 l~sgs~-d---g~v~vwd~~--~~~~~~~~~~-------h~~~v~~l~~--~~-~~~~~l~s~s~dg~i~iwd~~~~~~-  344 (502)
                      ||.++. +   .+|++|-+.  ++. +..+..       .-..+..+|+  ++ ++..+++....+|.+..|-+..... 
T Consensus       116 lavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g  194 (381)
T PF02333_consen  116 LAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG  194 (381)
T ss_dssp             EEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred             EEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence            444443 2   469999775  343 333321       1123566665  44 3445778888999998888763211 


Q ss_pred             -----ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEEEcC--C
Q 010748          345 -----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNP--L  415 (502)
Q Consensus       345 -----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp--~  415 (502)
                           ....+...+.+..|....... .++++-++.-|.-|+........    ...+....+  ....|-.|++-.  +
T Consensus       195 ~v~~~lVR~f~~~sQ~EGCVVDDe~g-~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~  269 (381)
T PF02333_consen  195 KVSATLVREFKVGSQPEGCVVDDETG-RLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSD  269 (381)
T ss_dssp             SEEEEEEEEEE-SS-EEEEEEETTTT-EEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CC
T ss_pred             cEeeEEEEEecCCCcceEEEEecccC-CEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCC
Confidence                 233456677899999987654 89999999888888876432100    112222222  345677777643  3


Q ss_pred             CCCEEEEEe-CCCcEEEEECCCC
Q 010748          416 VPNLLATGS-TDKMVKLWDLSNN  437 (502)
Q Consensus       416 ~~~~l~t~s-~dg~i~vwd~~~~  437 (502)
                      +..+|+.++ .+++..||+....
T Consensus       270 g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  270 GKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             C-EEEEEEEGGGTEEEEEESSTT
T ss_pred             CCeEEEEEcCCCCeEEEEecCCC
Confidence            434555555 4788999998763

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.17  E-value=4.8  Score=24.78  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=23.9

Q ss_pred             cCCCcEEEEEecCCcEEEEeCCCCeeeEeecc
Q 010748          276 KEFRNILASASADKQVKIWDVAAGKCNLTLEH  307 (502)
Q Consensus       276 ~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~  307 (502)
                      |+++.++++...+++|.++|+.+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            44454566666788999999999888877764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.09  E-value=8.7  Score=33.07  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=25.9

Q ss_pred             CCeeEEEeCCCC-----CCEEEEEeCCCcEEEEECCC
Q 010748          353 ADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRT  384 (502)
Q Consensus       353 ~~v~~v~~~~~~-----~~~~~~~~~dg~v~i~d~~~  384 (502)
                      ..+.+++|+|.|     ..+|++.+.+|.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999943     45788889999999997664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=83.18  E-value=20  Score=37.52  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=48.1

Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEEC
Q 010748          309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~  382 (502)
                      ...++++.-+|.+ +.++.+..||.|++|+....+... .+....+-..+.|..+|   +++.++|..+.-|.-
T Consensus        14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qsk-i~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSK-ICEEAKPKENLVFTNHG---LVTATSDRRALAWKE   82 (1636)
T ss_pred             cceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhh-hhhhcCCccceeeeccc---eEEEeccchhheeec
Confidence            4567888889998 889999999999999986544322 33344455566666543   666666777666654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=82.85  E-value=47  Score=32.05  Aligned_cols=71  Identities=13%  Similarity=0.136  Sum_probs=37.2

Q ss_pred             CCeeEEEeCCCC------CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          353 ADVESLAWDPHA------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       353 ~~v~~v~~~~~~------~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ..+..+.|....      ..+|++....+.|....+.....      ......+ ......+..+++.|+| .++++...
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~  325 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS------VTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDS  325 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE------EEEEEEECTTSSS-EEEEEEETTS-EEEEEE-T
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC------ccceEEccccCCCCceEEEEcCCC-eEEEEECC
Confidence            345555554321      22455555566777777754310      0111111 2334478999999998 77777667


Q ss_pred             CCcEE
Q 010748          426 DKMVK  430 (502)
Q Consensus       426 dg~i~  430 (502)
                      +|.|.
T Consensus       326 ~G~iy  330 (331)
T PF07995_consen  326 DGKIY  330 (331)
T ss_dssp             TTTEE
T ss_pred             CCeEe
Confidence            77764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=82.56  E-value=43  Score=31.44  Aligned_cols=225  Identities=12%  Similarity=0.132  Sum_probs=116.3

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCC---cCccee-cCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC
Q 010748          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDE---VQPHVI-LGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  278 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~---~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  278 (502)
                      ++++|.+.+-++....+...+||.+....   ..++.+ +...                   .-..-....+.+.|+...
T Consensus        28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~-------------------~~~~~~~~PTGiVfN~~~   88 (336)
T TIGR03118        28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP-------------------PPLAAEGTPTGQVFNGSD   88 (336)
T ss_pred             eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC-------------------CCCCCCCCccEEEEeCCC
Confidence            34478888888888889999999862110   011110 0000                   000122346666666431


Q ss_pred             -----------CcEEEEEecCCcEEEEeCCCCee-----eEeec-cCCCCe-EEEEEc--CCCCcEEEEEeCCCcEEEEe
Q 010748          279 -----------RNILASASADKQVKIWDVAAGKC-----NLTLE-HHTDKV-QAVAWN--HHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       279 -----------~~~l~sgs~dg~v~vwd~~~~~~-----~~~~~-~h~~~v-~~l~~~--~~~~~~l~s~s~dg~i~iwd  338 (502)
                                 ...++.++.||+|.-|...-+..     ...+. .....| ..+++.  ..+..+.++=-..++|.+||
T Consensus        89 ~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd  168 (336)
T TIGR03118        89 TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK  168 (336)
T ss_pred             ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence                       12467889999999998532221     12222 112333 234443  33434444455689999998


Q ss_pred             cCCCCCccc-eE--------------eecCCeeEEEe---CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE
Q 010748          339 ARISTHSGF-KW--------------AVAADVESLAW---DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       339 ~~~~~~~~~-~~--------------~~~~~v~~v~~---~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  400 (502)
                      -.-...... .+              ..-+.-.-|.|   .+.. +.=+.|..-|.|-+||+.-          ..++++
T Consensus       169 ~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G----------~l~~r~  237 (336)
T TIGR03118       169 GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNG----------QLLRRV  237 (336)
T ss_pred             CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCC----------cEEEEe
Confidence            654322110 00              00001111111   2221 1234445567899999874          445544


Q ss_pred             e--ccCCCeeEEEEcCC-----CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC------CCcEEEEEEcC
Q 010748          401 H--AHDKAVCTISYNPL-----VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK------AGAVFSVAFSE  459 (502)
Q Consensus       401 ~--~h~~~v~~l~~sp~-----~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~------~~~v~~~~~sp  459 (502)
                      .  +.-..-+.|+..|.     ...+|+---.||+|..||..+++.  +-.+...      ...++.+.|-.
T Consensus       238 as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~--~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       238 ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ--LGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             ccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce--eeeecCCCCCeEEecCeEEeeeCC
Confidence            2  22234466666552     225666666699999999988763  2222221      12467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.16  E-value=45  Score=36.43  Aligned_cols=76  Identities=11%  Similarity=0.128  Sum_probs=43.1

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      -|+.|.+|+.+|.+.+|.+..............              .......  -+..+|+-|...+. ..++ -...
T Consensus        25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~--------------~~~~~~~--~~kk~i~~l~~~~~-~~~l-l~l~   86 (877)
T KOG2063|consen   25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTE--------------TVKFEKE--FSKKPINKLLVCAS-LELL-LILS   86 (877)
T ss_pred             hCCEEEEEcCCCcEEEEeccccccccchhhhcc--------------hhHHhhh--hccchhHHHhhcch-hcch-heec
Confidence            489999999999999999864322111100000              0000111  12567777777665 2233 3344


Q ss_pred             CCcEEEEeCCCCee
Q 010748          288 DKQVKIWDVAAGKC  301 (502)
Q Consensus       288 dg~v~vwd~~~~~~  301 (502)
                      |+.|.++++.+-+.
T Consensus        87 dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   87 DSQIAVHKLPELEP  100 (877)
T ss_pred             CCcceeeecCcccc
Confidence            67788888776554

>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.15  E-value=5.9  Score=42.28  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=44.6

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcC--------------CCCcEEEEEeCC
Q 010748          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE--------------DSPFVLAIGGSK  471 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp--------------d~~~ll~sg~~d  471 (502)
                      .-..++.+|.| .+.|....=|.|.+.|+......  ....+...  .++.|-+              -..++.+-+-..
T Consensus       323 ~ge~lslSP~g-tlAAVTD~lgRVlLlDta~~ivv--r~wKGYRD--Asc~fv~vkek~~~s~~~~sRvAlFLvIyAPRr  397 (1244)
T KOG2727|consen  323 KGEKLSLSPSG-TLAAVTDSLGRVLLLDTAALIVV--RLWKGYRD--ASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRR  397 (1244)
T ss_pred             ccceeeeCCCc-cEEEEecccCcEEEEehhhhhHH--HHhccccc--ceeEEEEcccccCCCccCcCceeEEEEEecccc
Confidence            34567889987 77777777788989888664321  11111111  0111211              012344455667


Q ss_pred             CcEEEEECCCCccccc
Q 010748          472 GKLEIWDTLSDAGISN  487 (502)
Q Consensus       472 g~i~vwd~~~~~~~~~  487 (502)
                      |.+-||.+.+|..+..
T Consensus       398 giLEVW~~q~gpRV~A  413 (1244)
T KOG2727|consen  398 GILEVWQMQTGPRVLA  413 (1244)
T ss_pred             cHHHHHHhccCCeEEE
Confidence            8888888888877644

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=81.94  E-value=55  Score=32.17  Aligned_cols=182  Identities=15%  Similarity=0.116  Sum_probs=100.9

Q ss_pred             EEEEeCCCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE-
Q 010748          291 VKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS-  367 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-  367 (502)
                      |.+.| +.+..+..+++  ....|.++.|..+- -+++|--.-.-+.+.|+..++.+.......-+-.+--.+|-|.+. 
T Consensus       408 vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~  485 (603)
T COG4880         408 VYILD-ENLNVVGKLTGLAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL  485 (603)
T ss_pred             eEEEc-CCCcEEEEEeccCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence            44444 34455666654  35689999998776 667776666778899999888776555444444444566766554 


Q ss_pred             EEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCC----eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748          368 FVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKA----VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       368 ~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      +-+|..+|.  |.+||+........    .....+..-=++    -.++.|.|...-+++-+...|.  ++-+..+.  .
T Consensus       486 lGvG~~~g~vKiSLFdiSdl~~PkE----v~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~--k  557 (603)
T COG4880         486 LGVGAYQGGVKISLFDISDLAAPKE----VSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGS--K  557 (603)
T ss_pred             EEeecccCCceEEEEeccCCCCchh----hhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCc--e
Confidence            446666775  56788876532111    001111100000    1234455554344455555555  44444442  3


Q ss_pred             EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      +.....|...+...-|..|-  +...|++  .+.++|-.+.+.+.
T Consensus       558 l~k~~e~k~na~RA~fi~dy--lY~vg~~--ev~~ldenswe~Vg  598 (603)
T COG4880         558 LRKRAERKLNADRAFFIKDY--LYLVGGN--EVWKLDENSWEVVG  598 (603)
T ss_pred             eeehhhhcccceeeEEecce--EEEeccc--eeEEeccchHhhhh
Confidence            44444566667677777664  3444443  46666665555544

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=81.62  E-value=43  Score=30.75  Aligned_cols=73  Identities=7%  Similarity=0.027  Sum_probs=44.9

Q ss_pred             CCCeeEEEEcC------CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE-EEEcCCCCcEEEEEeCCCcEEE
Q 010748          404 DKAVCTISYNP------LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       404 ~~~v~~l~~sp------~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-~~~spd~~~ll~sg~~dg~i~v  476 (502)
                      ...|+|++--.      +....|+.|+..|.|.|.|...........+..-...|.+ -.|. ...|.|++++.||.|++
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~d-evdyRI~Va~Rdg~iy~  254 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYD-EVDYRIVVACRDGKIYT  254 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeee-ccceEEEEEeCCCEEEE
Confidence            34577775432      3457899999999999999887764333333322221211 1222 14456888899998876


Q ss_pred             E
Q 010748          477 W  477 (502)
Q Consensus       477 w  477 (502)
                      .
T Consensus       255 i  255 (257)
T PF14779_consen  255 I  255 (257)
T ss_pred             E
Confidence            4

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=80.15  E-value=33  Score=33.79  Aligned_cols=17  Identities=24%  Similarity=0.136  Sum_probs=9.9

Q ss_pred             EEEEecCCcEEEEeCCC
Q 010748          282 LASASADKQVKIWDVAA  298 (502)
Q Consensus       282 l~sgs~dg~v~vwd~~~  298 (502)
                      ++.|.....+.++|+..
T Consensus        43 v~gG~~~~~~~~~d~~~   59 (376)
T PRK14131         43 VGLGSAGTSWYKLDLNA   59 (376)
T ss_pred             EEeCCCCCeEEEEECCC
Confidence            33444455677888753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	502
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-12
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-12
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-12
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-12
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		4e-12
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-11
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-09
2h9l_A	329	Wdr5delta23 Length = 329		3e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-07
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-04
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-05
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		1e-05
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-05
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		6e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		8e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-05
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		9e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		1e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		3e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-04

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 280 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 329
           +I+A+ +    V ++D          +G+CN  L L  H  +   ++WN +    LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 330 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382
            D +V +       K+ +I          +A VE +AW    E  F    +D  +  +D 
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT 259
Query: 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442
           R+      +T+ + S  + AH   V  +S+NP    +LATGS DK V LWDL N +    
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
              + K   +F V +S  +  +LA  G+  +L +WD
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD 348

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 280 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 329
           +I+A+ +    V ++D          +G+CN  L L  H  +   ++WN +    LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 330 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382
            D +V +       K+ +I          +A VE +AW    E  F    +D  +  +D 
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 259
Query: 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442
           R+      +T+ + S  + AH   V  +S+NP    +LATGS DK V LWDL N +    
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484
              + K   +F V +S  +  +LA  G+  +L +WD LS  G
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD-LSKIG 353

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 298 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 348
           +G+C  +L L  H  +   ++WN +    LLS S D ++ +       K+ R+       
Sbjct: 172 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 231
Query: 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
               A VE +AW    E  F    +D  +  +D R      ++ + + S T+ AH   V 
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 285
Query: 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
            +S+NP    +LATGS DK V LWDL N +   + S       +F V +S  +  +LA  
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 344
Query: 469 GSKGKLEIWD 478
           G+  +L +WD
Sbjct: 345 GTDRRLHVWD 354

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 298 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 348
           +G+C  +L L  H  +   ++WN +    LLS S D ++ +       K+ R+       
Sbjct: 170 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 229
Query: 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
               A VE +AW    E  F    +D  +  +D R      ++ + + S T+ AH   V 
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 283
Query: 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
            +S+NP    +LATGS DK V LWDL N +   + S       +F V +S  +  +LA  
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 342
Query: 469 GSKGKLEIWD 478
           G+  +L +WD
Sbjct: 343 GTDRRLHVWD 352

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 298 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 348
           +G+C  +L L  H  +   ++WN +    LLS S D ++ +       K+ R+       
Sbjct: 168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227
Query: 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
               A VE +AW    E  F    +D  +  +D R      ++ + + S T+ AH   V 
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 281
Query: 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
            +S+NP    +LATGS DK V LWDL N +   + S       +F V +S  +  +LA  
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 340
Query: 469 GSKGKLEIWDTLSDAG 484
           G+  +L +WD LS  G
Sbjct: 341 GTDRRLHVWD-LSKIG 355

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 281 ILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS- 329
           I+A+ +    V ++D          +G+CN  L L  H  +   ++WN +    LLS S 
Sbjct: 139 IIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD 198
Query: 330 ------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
                 +D S V K+ ++           A VE ++W    E  F    +D  +  +D R
Sbjct: 199 DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTR 258
Query: 384 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
           +      + + + S ++ AH   V  +S+NP    +LATGS DK V LWDL N +   + 
Sbjct: 259 S------NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LH 311
Query: 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           S       +F V +S  +  +LA  G+  +L +WD
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HT SVL L +++    ++ + S+D  V++WDV  G+   TL HH + V  + +N+    +
Sbjct: 172 HTGSVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GM 225
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
           +++ S DRS+ + D    T    +  +     ++      +   V +  D TIK ++  T
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
                     +   TL+ H + +  + Y      L+ +GS+D  ++LWD+     +C+  
Sbjct: 286 C---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG--ACLRV 331
Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
                  V  + F  D+  +++ G   GK+++WD ++
Sbjct: 332 LEGHEELVRCIRF--DNKRIVS-GAYDGKIKVWDLVA 365

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 63  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 120
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 121 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 175
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 176 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 228
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 70  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 81  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 138
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 139 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 193
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 194 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 246
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 60  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 117
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 118 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 172
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 173 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 225
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 70  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 69  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 126
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 127 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 181
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 182 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 234
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 64  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 70  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 65  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 122
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 123 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 177
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 178 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 230
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 64  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 86  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 143
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 144 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 198
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 199 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 251
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 88  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 145
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 146 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 200
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 201 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 253
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNDLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 57/256 (22%)
Query: 271 GLAWNKEFR-NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 329
           G  W+ + R NI+ S S D+ +K+W+   G+C  TL  HT  V+ +   H   + ++SGS
Sbjct: 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM---HLHEKRVVSGS 216
Query: 330 FDRSVVMKD----------------ARISTHSGFKWAVAA-DVESLAWDPHAE---HSF- 368
            D ++ + D                 R   + G +    A D     WDP  E   H+  
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Query: 369 -----VVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412
                V SL+           D +I+ +D+ T       T  QS              S 
Sbjct: 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS------------LTSG 324
Query: 413 NPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
             L  N+L +G+ D  VK+WD+   Q    +   N    AV  + F+++  FV+      
Sbjct: 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVIT-SSDD 381
Query: 472 GKLEIWDTLSDAGISN 487
           G +++WD  +   I N
Sbjct: 382 GTVKLWDLKTGEFIRN 397

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 61/250 (24%)
Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 268
           GN +A  S + ++ +W++D  DE +   +L                          HT  
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNS------------------------HTQD 152
Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHSPQILL 326
           V  + W+   + +LASAS D  VK++        C  TLE H   V ++A++  S Q L 
Sbjct: 153 VKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLA 210
Query: 327 SGSFDRSVVMKDAR-------------------ISTHSGFKWAVAADVESLAWDPHAEHS 367
           S S DR+V +                       I T SGF    +  +  +AW      +
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH---SRTIYDIAW-CQLTGA 266
Query: 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLAT 422
              +  D  I+ F     + DP+S  QQ +F+L      AH + V  +++NP  P LLA+
Sbjct: 267 LATACGDDAIRVF-----QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 423 GSTDKMVKLW 432
            S D  V  W
Sbjct: 322 CSDDGEVAFW 331

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 28/205 (13%)
Query: 265 HTDS-VLGLAWNKEFRNILASASADKQVKIWDVAAGK--CNLTL-EHHTDKVQAVAWNHH 320
           H DS    LAWN     +LAS   D++++IW        C   L E H   V+ VAW   
Sbjct: 14  HPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW--- 69
Query: 321 SP--QILLSGSFDRSVVMKDAR------ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 372
           SP    L S SFD +  +          ++T  G +     +V+S+AW P   +      
Sbjct: 70  SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE----NEVKSVAWAPSG-NLLATCS 124
Query: 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432
            D ++  +++       +    +    L++H + V  + ++P    LLA+ S D  VKL+
Sbjct: 125 RDKSVWVWEV------DEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY 177
Query: 433 DLSNNQPSCIASRNPKAGAVFSVAF 457
               +   C A+       V+S+AF
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAF 202

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 60/290 (20%)
Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 268
           G F+A G+ +  I IWD   I+  +  +IL G                        H   
Sbjct: 135 GKFLATGAEDRLIRIWD---IENRKIVMILQG------------------------HEQD 167
Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
           +  L +     + L S S D+ V+IWD+  G+C+LTL    D V  VA +    + + +G
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAG 225
Query: 329 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF-VVSLEDG----------TI 377
           S DR+V + D+     +GF      D E+ +   H +  + VV   DG          ++
Sbjct: 226 SLDRAVRVWDS----ETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 378 KGFDIRTAKSDPDSTSQQSS---FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
           K ++++ A +  DS +  S     T   H   V +++       +L+ GS D+ V  WD 
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS-GSKDRGVLFWDK 339
Query: 435 SNNQPSCI--ASRNPKAGAVFSVAFSEDSPF-----VLAIGGSKGKLEIW 477
            +  P  +    RN    +V SVA +  S       V A G    K  IW
Sbjct: 340 KSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIW 385

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
           +AW KE  N LA  ++  +V++WDV   K    +  H+ +V +++WN +   IL SGS  
Sbjct: 73  VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 128
Query: 332 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
             +   D R++ H     SG     + +V  L W P   H     L  G      +    
Sbjct: 129 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 178
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 444
           S P         T   H  AV  +++ P   N+LAT  G++D+ +++W++ +   +C+++
Sbjct: 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 236
Query: 445 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 477
            +  +  V S+ +S      +   G ++ +L IW
Sbjct: 237 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 269

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 65/255 (25%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           +++ SAS D  +K+WD   G    TL+ HTD VQ ++++H S ++L S S D ++ + D 
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDF 179
Query: 340 R----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA---------- 385
           +    I T  G       +V S++  P+ +H  V +  D TIK ++++T           
Sbjct: 180 QGFECIRTMHGHD----HNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 386 ------KSDPDST-----------------SQQSSFTLHAHDKAVCTISYNPLVPN---- 418
                 + + D T                 +++    L  H   V  IS+ P        
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Query: 419 ---------------LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 463
                           L +GS DK +K+WD+S     C+ +       V  V F     F
Sbjct: 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF 352
Query: 464 VLAIGGSKGKLEIWD 478
           +L+    K  L +WD
Sbjct: 353 ILSCADDK-TLRVWD 366

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
           +AW KE  N LA  ++  +V++WDV   K    +  H+ +V +++WN +   IL SGS  
Sbjct: 164 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 219
Query: 332 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
             +   D R++ H     SG     + +V  L W P   H     L  G      +    
Sbjct: 220 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 269
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 444
           S P         T   H  AV  +++ P   N+LAT  G++D+ +++W++ +   +C+++
Sbjct: 270 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 327
Query: 445 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 477
            +  +  V S+ +S      +   G ++ +L IW
Sbjct: 328 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 360

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
           +AW KE  N LA  ++  +V++WDV   K    +  H+ +V +++WN +   IL SGS  
Sbjct: 153 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 208
Query: 332 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
             +   D R++ H     SG     + +V  L W P   H     L  G      +    
Sbjct: 209 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 258
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 444
           S P         T   H  AV  +++ P   N+LAT  G++D+ +++W++ +   +C+++
Sbjct: 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 316
Query: 445 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 477
            +  +  V S+ +S      +   G ++ +L IW
Sbjct: 317 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 349

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 274 WNKEF-RNILASASADKQVKIWDVAAGKCNLTL------EHHTDKVQAVAWNHHSPQILL 326
           W+ +F + ILA+ S D+++K+  V+    + TL        H   +++VAW  H+  +L 
Sbjct: 18  WSFDFSQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLA 74
Query: 327 SGSFDRSVVMKDARISTHSGFKWAVAA-------DVESLAWDPHAEHSFVVSLEDGTIKG 379
           +GSFD +V +     S    F+  + A       +V+ +AW     +    S +      
Sbjct: 75  AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS---- 130
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439
             +   ++D      +    L  H + V  + ++P    LLA+ S D  V++W   ++  
Sbjct: 131 --VWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW 187
Query: 440 SCIASRNPKAGAVFSVAFSE-DSPFVLAIGGSKGKLEIWDTLSD 482
            C+A  N   G V+S  F + +  F L  G     + +W  + D
Sbjct: 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 317
           HT  VL +AW     N++AS S D  V +W++  G   L       TLE HT +V  VAW
Sbjct: 80  HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 370
           +  +  +LLS   D  +++ D              A V +L  D H +  + V       
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 371 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422
               S  D  ++  + R     A+ D      +    +   +  + T  ++ +       
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 423 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
             +++ V LWD  +  +P  +   +  +G +    F  D+  V   G     +  ++  S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 482 DAGISNRFSKYS 493
           +A   +  S +S
Sbjct: 300 EAPFLHYLSMFS 311

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 317
           HT  VL +AW     N++AS S D  V +W++  G   L       TLE HT +V  VAW
Sbjct: 80  HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 370
           +  +  +LLS   D  +++ D              A V +L  D H +  + V       
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 371 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422
               S  D  ++  + R     A+ D      +    +   +  + T  ++ +       
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 423 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
             +++ V LWD  +  +P  +   +  +G +    F  D+  V   G     +  ++  S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 482 DAGISNRFSKYS 493
           +A   +  S +S
Sbjct: 300 EAPFLHYLSMFS 311

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 37/243 (15%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H+ SV G+A++ + + I ASAS DK VK+W+   G+   TL  H+  V  VA+     Q 
Sbjct: 220 HSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF-RPDGQT 276
Query: 325 LLSGSFDRSVVMKDAR------ISTHSGFKWAVA--ADVESLA----------WDPHAEH 366
           + S S D++V + +        ++ HS   W VA   D +++A          W+ + +H
Sbjct: 277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Query: 367 SFVVSLEDGTIKGF----DIRTAKSDPD-------STSQQSSFTLHAHDKAVCTISYNPL 415
              ++    ++ G     D +T  S  D       + + Q   TL  H  +V  ++++P 
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP- 395
Query: 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475
               +A+ S DK VKLW   N     + +    + +V+ VAFS D   + +    K  ++
Sbjct: 396 DGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK-TVK 451
Query: 476 IWD 478
           +W+
Sbjct: 452 LWN 454

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 25/179 (13%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H+  V GLAW  +    LAS   D  V+IWD  +     T  +H   V+AVAW      +
Sbjct: 216 HSSEVCGLAWRSDGLQ-LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 325 LLS--GSFDRSV----VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
           L +  G+ D+ +        AR++T         + V SL W PH++       E  +  
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSK-------EIMSTH 322
Query: 379 GF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWDL 434
           GF D   +     S+       + AHD  V    Y+ L P+  +L+T ++D+ +K W +
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL---YSALSPDGRILSTAASDENLKFWRV 378

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 37/230 (16%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIW-----DVAAGKCNLTLEHHTDKVQAVAWNH 319
           HTD V  +A   +  +I+ SAS DK + +W     D A G     L  H+  V+ V  + 
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
              Q  LSGS+D  + +            W +AA V +  +  H +    V+    ++  
Sbjct: 441 DG-QFALSGSWDGELRL------------WDLAAGVSTRRFVGHTKDVLSVAF---SLDN 484
Query: 380 FDIRTAKSDPD----STSQQSSFTL----HAHDKAVCTISYNP--LVPNLLATGSTDKMV 429
             I +A  D      +T  +  +T+      H   V  + ++P  L P ++ + S DK V
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV-SASWDKTV 543
Query: 430 KLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           K+W+LSN +  S +A      G V +VA S D     A GG  G + +WD
Sbjct: 544 KVWNLSNCKLRSTLAGHT---GYVSTVAVSPDGSLC-ASGGKDGVVLLWD 589

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H D VL  A++ +  + +A+ SADK+VKIWD A GK   T + H+++V    + + S  +
Sbjct: 663 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 721
Query: 325 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
           LL +GS D  + + D          +     V    + P  E     S  DGT++ +D+R
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 780
Query: 384 TA 385
           +A
Sbjct: 781 SA 782

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HTD+V    ++++ + I AS  ADK ++++    G+  L ++ H D+V   A++      
Sbjct: 621 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 674
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
                        D+ I+T S       AD +   WD                       
Sbjct: 675 ------------DDSYIATCS-------ADKKVKIWD----------------------- 692
Query: 385 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
                 S + +   T   H + V C    N     LLATGS D  +KLWDL  NQ  C  
Sbjct: 693 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 742
Query: 444 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 481
            RN   G   SV     SP   +LA   + G L +WD  S
Sbjct: 743 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H D VL  A++ +  + +A+ SADK+VKIWD A GK   T + H+++V    + + S  +
Sbjct: 656 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714
Query: 325 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
           LL +GS D  + + D          +     V    + P  E     S  DGT++ +D+R
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 773
Query: 384 TA 385
           +A
Sbjct: 774 SA 775

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HTD+V    ++++ + I AS  ADK ++++    G+  L ++ H D+V   A++      
Sbjct: 614 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 667
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
                        D+ I+T S       AD +   WD                       
Sbjct: 668 ------------DDSYIATCS-------ADKKVKIWD----------------------- 685
Query: 385 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
                 S + +   T   H + V C    N     LLATGS D  +KLWDL  NQ  C  
Sbjct: 686 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 735
Query: 444 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 481
            RN   G   SV     SP   +LA   + G L +WD  S
Sbjct: 736 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 440
           I+  K D D+++ + S +  AHD ++  I + +P    ++A+ S DK VKLW+   +Q  
Sbjct: 35  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 441 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 480
           C   R       N   G+++SV F+       LA  G+ G L ++D L
Sbjct: 95  CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 440
           I+  K D D+++ + S +  AHD ++  I + +P    ++A+ S DK VKLW+   +Q  
Sbjct: 33  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 92
Query: 441 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 480
           C   R       N   G+++SV F+       LA  G+ G L ++D L
Sbjct: 93  CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 140

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 440
           I+  K D D+++ + S +  AHD ++  I + +P    ++A+ S DK VKLW+   +Q  
Sbjct: 35  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 441 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 480
           C   R       N   G+++SV F+       LA  G+ G L ++D L
Sbjct: 95  CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 27/225 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SP- 322
           H  SV  + W      +  S+S DK +K+WD      N          +   ++HH SP 
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT-----NTLQTADVFNFEETVYSHHMSPV 152
Query: 323 ----QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
                ++  G+    V + D +  + S        ++ +++W P  ++    +  D  +K
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 379 GFDIRTAK---------SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429
            +D+R A          +   S + +S+ T  AH+  V  + +     +LL  G TD  +
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANT--AHNGKVNGLCFTSDGLHLLTVG-TDNRM 269
Query: 430 KLWDLSNNQPSCI----ASRNPKAGAVFSVAFSEDSPFVLAIGGS 470
           +LW+ SN + + +       N K G  F+V+    S FV    GS
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 27/227 (11%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H+  V  L W  E +N + SAS D ++ +W+    +    ++ H   V   A+  +   +
Sbjct: 65  HSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123
Query: 325 L------------LSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVS 371
                        LS   DR   M  +R+ T H G+         S  + P  E   +  
Sbjct: 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-------ASSCQYVPDQETRLITG 176
Query: 372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431
             D T   +D+ T +      S+  S     H   V ++S N L  N+  +GS D  V+L
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPS----GHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           WDL     + + + +   G + SV F  D       G   G   ++D
Sbjct: 233 WDLRITSRA-VRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFD 277

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 31/190 (16%)
Query: 311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAV-AADVES----------- 357
           +    AW+H    +L+SG+   +V   DA  ST S  + W++ AAD E            
Sbjct: 14  RTATFAWSHDKIPLLVSGTVSGTV---DANFSTDSSLELWSLLAADSEKPIASLQVDSKF 70
Query: 358 --LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415
             L W  H       +L++G+++ +    A +  +S ++ S+     H  +V T+ +N  
Sbjct: 71  NDLDWS-HNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-----HSSSVKTVKFNAK 124
Query: 416 VPNLLATGSTDKMVKLWDL-------SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
             N+LA+G  +  + +WD+       SN  P            V S+A+++    V A  
Sbjct: 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184
Query: 469 GSKGKLEIWD 478
           GS     IWD
Sbjct: 185 GSSNFASIWD 194

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ + +A+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           NI+ S S D  + +WDVA  KC   L  HTD++ +  ++H   +  +S S D ++ + D 
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC-ISASMDTTIRIWDL 339
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
               +    + +      +     ++   V +  DG+I+G+         D+      F+
Sbjct: 340 E---NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKM 428
            H  + +  T  Y  +  N+L +GS ++ 
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ + LA+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           NI+ S S D  + +WDVA  KC   L  HTD++ +  ++H   +  +S S D ++ + D 
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC-ISASXDTTIRIWDL 339
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
               +    + +      +     ++   V +  DG+I+G+         D+      F+
Sbjct: 340 E---NGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKM 428
            H  + +  T  Y  +  N+L +GS ++ 
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343
           S S D  +K+WD+A      +   H  +V  VA + H   + LS S D  +++ D R   
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
Query: 344 HSGFKWAVAADV--ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401
            +      A      SLAW P     FV   E+GT+   D +         S     +  
Sbjct: 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK---------STSCVLSSA 254
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
            H + V  + ++P     LA+ S D  + + D S ++
Sbjct: 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 67  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 186
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ + LA+ S D+   +W   N Q    
Sbjct: 187 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 246
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 319
           H   V  +A   +F +++ SAS DK + +W +   + N       L  H+  V  V  + 
Sbjct: 37  HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
              Q  LSGS+D ++ + D    T +        DV S+A+        V    D TIK 
Sbjct: 97  DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 154
Query: 380 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 436
           ++          T     +T+   +H + V  + ++P   N ++ +   DK+VK+W+L+N
Sbjct: 155 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 437 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
               C    N     G + +V  S D     A GG  G+  +WD
Sbjct: 205 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 243

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ +  A+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 319
           H   V  +A   +F +++ SAS DK + +W +   + N       L  H+  V  V  + 
Sbjct: 14  HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 73
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
              Q  LSGS+D ++ + D    T +        DV S+A+        V    D TIK 
Sbjct: 74  DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 131
Query: 380 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 436
           ++          T     +T+   +H + V  + ++P   N ++ +   DK+VK+W+L+N
Sbjct: 132 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 437 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
               C    N     G + +V  S D     A GG  G+  +WD
Sbjct: 182 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 220

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           N   SAS D  +++W++  G+C      HT  V +VA++  + QI+  G  +   V    
Sbjct: 80  NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSF 398
               H+  + A    V  + + P  +   +VS   D  +K +D+ T +   D        
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD-------- 191
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
            L  H   V +++ +P   +L A+   D + +LWDL+  +
Sbjct: 192 -LKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGE 229

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ + LA+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	502
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.63
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.53
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.5
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.49
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.49
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.43
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.34
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.24
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.23
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.21
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.07
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.05
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.0
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.98
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.98
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.97
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.97
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.93
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.9
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.89
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.88
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.88
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.86
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.85
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.83
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.83
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.81
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.8
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.76
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.73
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.69
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.65
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.61
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.58
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.58
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.57
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.55
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.55
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.54
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.53
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.5
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.48
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.47
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.44
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.41
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.4
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.4
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.36
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.31
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.31
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.27
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.26
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.24
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.22
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.22
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.21
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.19
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.18
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.12
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.12
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.08
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.07
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.05
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.98
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.95
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.94
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.92
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.89
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.85
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.78
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.76
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.73
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.66
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.66
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.63
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.6
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.57
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.5
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.49
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.36
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.33
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.26
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.23
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.19
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.18
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.17
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.12
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.04
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.97
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.76
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.62
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.6
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.38
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.29
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.19
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.08
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.99
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.97
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.87
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.71
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.59
3ott_A	758	Two-component system sensor histidine kinase; beta	95.5
3ott_A	758	Two-component system sensor histidine kinase; beta	95.42
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.15
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.73
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.24
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.95
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.88
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.87
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.86
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.75
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.67
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.66
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.23
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.84
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.38
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.31
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.02
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.69
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	89.65
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	89.39
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.04
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.34
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	86.17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	84.87
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.59
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	84.53
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	82.4
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	81.99
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.07

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-44  Score=349.62  Aligned_cols=301  Identities=20%  Similarity=0.243  Sum_probs=239.0

Q ss_pred             CccccccccccCCCceEEEEEecCCcc--eeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVS--HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~--~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      +...|.++.|+|+|++|++++ ++...  ...++.|.........-.............+++|       +|+ +.|++|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d-~~l~~~   99 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW-------VGE-RGILVA   99 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE-------ETT-TEEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE-------eCC-CeEEEE
Confidence            566799999999999999887 33221  1244455432221101000011111223467777       566 478899


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.||.|+|||+.+++....                       ....+.+|...|++|+|+|+ +.+|++|+.|++|++||
T Consensus       100 s~dg~v~lWd~~~~~~~~~-----------------------~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~iwd  155 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIV-----------------------SKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIKVWD  155 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEE-----------------------EEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred             ECCCEEEEEeccCCCceeE-----------------------eeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEE
Confidence            9999999999986543321                       12234589999999999999 56999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce--EeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      +.+++++.++.+|...|++++|+|++..+|++++.|++|++||+++++.....  ..+...+.+++|+|.+..++++|+.
T Consensus       156 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence            99999999999999999999999998778999999999999999988765533  2345578999999988889999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      ||.|++||+++.         .++..+.+|...|++++|+|++..+|++|+.|++|+|||+.+++   +..+.+|.+.|+
T Consensus       236 dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V~  303 (344)
T 4gqb_B          236 NGTVSLVDTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFVR  303 (344)
T ss_dssp             TSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCEE
T ss_pred             CCcEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---EEEEcCCCCCEE
Confidence            999999999986         77889999999999999999986789999999999999999876   445688999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       454 ~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +++|+|+++++|++||.||+|++|++.+..
T Consensus       304 ~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          304 DATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999999998889999999999999997754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.2e-43  Score=342.16  Aligned_cols=304  Identities=20%  Similarity=0.244  Sum_probs=234.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCc-ceeEEEEEecCCCCCCC----eeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDV-SHLEVYILEESDGGDPN----LYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~-~~l~v~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      .|+..|.+++|+|+|++||+|+.+... --..|++|+........    ....|.    ....+++|       +|++.+
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~----~~V~~~~~-------s~d~~~  108 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE----AGVTDVAW-------VSEKGI  108 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS----SCEEEEEE-------ETTTEE
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCC----CCEEEEEE-------cCCCCE
Confidence            488999999999999999999864310 01256777654431111    112222    22367877       577755


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                       ++++.||.|+|||+.+.+...                       .......+|...|++|+|+|+ +.+|++|+.|++|
T Consensus       109 -l~~s~dg~v~lWd~~~~~~~~-----------------------~~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v  163 (357)
T 4g56_B          109 -LVASDSGAVELWEILEKESLL-----------------------VNKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSV  163 (357)
T ss_dssp             -EEEETTSCEEEC--------C-----------------------CCCEEECCCSSCEEEEEECSS-SSEEEEEETTSCE
T ss_pred             -EEEECCCEEEEeeccccceeE-----------------------EEeeccCCCCCCEEEEEECCC-CCEEEEEeCCCeE
Confidence             556789999999997644322                       112233479999999999999 5699999999999


Q ss_pred             EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE--eecCCeeEEEeCCCCCCEEE
Q 010748          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~  369 (502)
                      ++||+.+++++..+.+|...|++++|++++..++++++.||+|++||+++++......  .+...+.+++|+|++..+++
T Consensus       164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence            9999999999999999999999999999987789999999999999999887654332  35667999999999888999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  449 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~  449 (502)
                      +|+.|+.|++||++++         .++..+.+|...|++++|+|++..+|++|+.|++|+|||+.+++   +....+|.
T Consensus       244 ~g~~d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~---~~~~~~H~  311 (357)
T 4g56_B          244 CGDETGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE---VFRDLSHR  311 (357)
T ss_dssp             EEESSSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE---EEEECCCS
T ss_pred             EeecccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc---EeEECCCC
Confidence            9999999999999986         77889999999999999999987899999999999999999886   23445799


Q ss_pred             CcEEEEEEcC-CCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          450 GAVFSVAFSE-DSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       450 ~~v~~~~~sp-d~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +.|++++|+| ++. +|++|+.||+|++|++.+.......+
T Consensus       312 ~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~~~~~~~i  351 (357)
T 4g56_B          312 DFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLPSEGRTENLI  351 (357)
T ss_dssp             SCEEEEEECSSSTT-EEEEEETTSCEEEEECC---------
T ss_pred             CCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccccc
Confidence            9999999999 566 69999999999999997765554443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-42  Score=344.59  Aligned_cols=287  Identities=22%  Similarity=0.365  Sum_probs=247.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++.|+|++++|++|+.++   .++||.+.....  ...+..|..    ...+++|       +|++++|++|
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg---~i~vwd~~~~~~--~~~l~~h~~----~V~~v~~-------~~~~~~l~sg  168 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDA---TIKVWDYETGDF--ERTLKGHTD----SVQDISF-------DHSGKLLASC  168 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSS---CEEEEETTTCCC--CEEECCCSS----CEEEEEE-------CTTSSEEEEE
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcE--EEEEeccCC----cEEEEEE-------cCCCCEEEEE
Confidence            35889999999999999999999887   567776654432  122222322    2367777       7899999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|++|+|||+.+...                           ...+.+|...|.+++|+|+ +.+|++|+.|++|++||
T Consensus       169 s~D~~i~iwd~~~~~~---------------------------~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd  220 (410)
T 1vyh_C          169 SADMTIKLWDFQGFEC---------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWE  220 (410)
T ss_dssp             ETTSCCCEEETTSSCE---------------------------EECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEE
T ss_pred             eCCCeEEEEeCCCCce---------------------------eEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEE
Confidence            9999999999975332                           2245589999999999999 56999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC-----------
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-----------  364 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-----------  364 (502)
                      +.+++++.++.+|...|.++.|+|++ .+|++|+.|++|++||+++.........|...|.+++|+|++           
T Consensus       221 ~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  299 (410)
T 1vyh_C          221 VQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS  299 (410)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             CCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence            99999999999999999999999999 899999999999999999988777667888999999999963           


Q ss_pred             --------CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          365 --------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       365 --------~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                              ..++++|+.||.|++||++++         .++..+.+|...|++++|+|++ .+|++|+.||.|++||+.+
T Consensus       300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCC---------ceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC
Confidence                    348999999999999999986         7788899999999999999998 8999999999999999988


Q ss_pred             CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      ++  ++..+.+|...|++++|+|++++ |++|+.||+|+||+++
T Consensus       370 ~~--~~~~~~~h~~~v~~l~~~~~~~~-l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          370 KR--CMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SC--CCEEEECCSSCEEEEEECSSSSC-EEEEETTSEEEEEC--
T ss_pred             Cc--eEEEEcCCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Confidence            77  56677889999999999999995 9999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-41  Score=324.50  Aligned_cols=287  Identities=20%  Similarity=0.317  Sum_probs=243.3

Q ss_pred             CCCccccccccccCC----CceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          136 DEDSEDLEDMTINPN----DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~----~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      ..|.+.|.+++|+|+    +.+|++|+.++   .++||.+.............|...    ..++.|       ++++.+
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~---~v~vW~~~~~~~~~~~~l~gh~~~----v~~~~~-------~~~~~~   94 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDD---LVKVWKWRDERLDLQWSLEGHQLG----VVSVDI-------SHTLPI   94 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTS---CEEEEEEETTEEEEEEEECCCSSC----EEEEEE-------CSSSSE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCC---CEEEEECCCCCeeeeeeeccCCCC----EEEEEE-------CCCCCE
Confidence            458999999999985    56899999887   679998875432000011223222    256666       788999


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      +++|+.|+.|++||+.++..+                           ..+..|...+.+++|+|+ +.+|++|+.+|.|
T Consensus        95 l~s~s~D~~i~lWd~~~~~~~---------------------------~~~~~~~~~~~~~~~spd-g~~l~~g~~dg~v  146 (321)
T 3ow8_A           95 AASSSLDAHIRLWDLENGKQI---------------------------KSIDAGPVDAWTLAFSPD-SQYLATGTHVGKV  146 (321)
T ss_dssp             EEEEETTSEEEEEETTTTEEE---------------------------EEEECCTTCCCCEEECTT-SSEEEEECTTSEE
T ss_pred             EEEEeCCCcEEEEECCCCCEE---------------------------EEEeCCCccEEEEEECCC-CCEEEEEcCCCcE
Confidence            999999999999999754322                           233467788999999999 5699999999999


Q ss_pred             EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEE
Q 010748          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~  371 (502)
                      ++|++.+++....+..|...|.+++|+|++ ++|++|+.||.|++||+++++.......+...|.+++|+|++. ++++|
T Consensus       147 ~i~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~  224 (321)
T 3ow8_A          147 NIFGVESGKKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTA  224 (321)
T ss_dssp             EEEETTTCSEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEE
T ss_pred             EEEEcCCCceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEE
Confidence            999999999999999999999999999999 8999999999999999998877666667888999999999865 89999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       372 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      +.||.|++||+++.         .....+.+|...|.+++|+|++ .+|++++.|++|++||+.+++  ++..+..|.+.
T Consensus       225 s~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~--~~~~~~~h~~~  292 (321)
T 3ow8_A          225 SDDGYIKIYDVQHA---------NLAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRT--CVHTFFDHQDQ  292 (321)
T ss_dssp             CTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSC
T ss_pred             cCCCeEEEEECCCc---------ceeEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCE--EEEEEcCCCCc
Confidence            99999999999976         6778889999999999999998 899999999999999999887  67788899999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       452 v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      |.+++|+|++. .|++++.||.|+|||+
T Consensus       293 v~~v~~s~~g~-~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          293 VWGVKYNGNGS-KIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEEEECTTSS-EEEEEETTCCEEEEEC
T ss_pred             EEEEEECCCCC-EEEEEeCCCeEEEEeC
Confidence            99999999999 5899999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-40  Score=323.79  Aligned_cols=286  Identities=18%  Similarity=0.315  Sum_probs=237.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.|+|++++|++|+.++   .++||.......  ......|    .....+++|       +|++++||+|+
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg---~v~iWd~~~~~~--~~~~~~~----~~~v~~~~~-------s~~~~~l~s~~  116 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDG---KLIIWDSYTTNK--VHAIPLR----SSWVMTCAY-------APSGNYVACGG  116 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTT---EEEEEETTTCCE--EEEEECS----SSCEEEEEE-------CTTSSEEEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCC---cEEEEECCCCCc--ceEeecC----CccEEEEEE-------CCCCCEEEEEe
Confidence            5888999999999999999999887   445554332221  1111122    223456666       79999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .|+.|++|++.+....                       ......+.+|...|.++.|+++ + .|++|+.|++|++||+
T Consensus       117 ~d~~v~iw~~~~~~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~  171 (340)
T 1got_B          117 LDNICSIYNLKTREGN-----------------------VRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDI  171 (340)
T ss_dssp             TTCEEEEEETTTCSBS-----------------------CEEEEEEECCSSCEEEEEEEET-T-EEEEEETTSCEEEEET
T ss_pred             CCCeEEEEECccCCCc-----------------------ceeEEEecCCCccEEEEEECCC-C-cEEEEECCCcEEEEEC
Confidence            9999999999753211                       1222345689999999999987 3 5899999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      .+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||+++.........|...|.+++|+|++. ++++|+.||.
T Consensus       172 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~  249 (340)
T 1got_B          172 ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDAT  249 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCCcEEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCc
Confidence            9999999999999999999999998 8999999999999999999887766667889999999999865 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEe--ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      |++||+++.         ..+..+.  .+...|++++|+|++ .+|++|+.|+.|++||+.+.+  .+..+.+|.++|.+
T Consensus       250 v~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~  317 (340)
T 1got_B          250 CRLFDLRAD---------QELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSC  317 (340)
T ss_dssp             EEEEETTTT---------EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEE
T ss_pred             EEEEECCCC---------cEEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCc--EeeEeecCCCcEEE
Confidence            999999976         4444443  234579999999998 999999999999999999887  56677899999999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          455 VAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       455 ~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      ++|+|++.+ |++|+.||.|+|||
T Consensus       318 ~~~s~dg~~-l~s~s~D~~i~iWd  340 (340)
T 1got_B          318 LGVTDDGMA-VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECTTSSC-EEEEETTSCEEEEC
T ss_pred             EEEcCCCCE-EEEEcCCccEEecC
Confidence            999999995 99999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.2e-41  Score=330.99  Aligned_cols=299  Identities=21%  Similarity=0.319  Sum_probs=240.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++|+.++   .++||.......  ...+..|.    ....+++|       +|++++||+|
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~---~v~iWd~~~~~~--~~~~~~h~----~~v~~~~~-------s~~g~~las~  126 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDG---RLIVWNALTSQK--THAIKLHC----PWVMECAF-------APNGQSVACG  126 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTS---EEEEEETTTTEE--EEEEECCC----TTCCCCEE-------CTTSSEEEEC
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcc--ceEEecCC----CCEEEEEE-------CCCCCEEEEe
Confidence            46899999999999999999999887   456665433321  11112222    22345555       8999999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|+.|+||++.......                    ........+.+|...|.++.|+|++...|++|+.|++|++||
T Consensus       127 ~~d~~v~iw~~~~~~~~~--------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd  186 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRD--------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWD  186 (380)
T ss_dssp             CSSSCCEEEECCCCSSCC--------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEEC
T ss_pred             eCCCcEEEEECCCCcccc--------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEE
Confidence            999999999997532111                    112233456789999999999998777899999999999999


Q ss_pred             CCCCeeeEee-----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-CCccceEeecCCeeEEEeCCCCCCEEE
Q 010748          296 VAAGKCNLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       296 ~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~~  369 (502)
                      +.+++++..+     .+|...|.++.|++.++.+|++|+.|++|++||++.. ........|...|.+++|+|++. +|+
T Consensus       187 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~  265 (380)
T 3iz6_a          187 VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFG  265 (380)
T ss_dssp             TTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEE
T ss_pred             cCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEE
Confidence            9999988877     6799999999999855589999999999999999854 44555567899999999999865 899


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      +|+.||.|++||++++         ..+..+..+.       ..|++++|+|++ .+|++|+.||.|++||+..++.  +
T Consensus       266 s~s~D~~i~lwd~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~--~  333 (380)
T 3iz6_a          266 TGSDDGTCRLFDMRTG---------HQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEM--V  333 (380)
T ss_dssp             EECSSSCEEEEETTTT---------EEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCE--E
T ss_pred             EEcCCCeEEEEECCCC---------cEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCce--E
Confidence            9999999999999986         4455544332       358999999998 9999999999999999988873  3


Q ss_pred             EEe----cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          443 ASR----NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       443 ~~~----~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      ..+    .+|.+.|++++|+|++. .|++|+.||+|+||++.....
T Consensus       334 ~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          334 LNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEECCSSSS
T ss_pred             EEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEecCCCcc
Confidence            333    67999999999999999 599999999999999976543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=318.59  Aligned_cols=290  Identities=17%  Similarity=0.256  Sum_probs=237.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++|++|+.++   .++||..  ...   .. .+.-........+++|       +|+|++||+|+
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg---~v~vWd~--~~~---~~-~~~~~~~~~~v~~~~~-------sp~g~~lasg~  125 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDG---KVIVWDS--FTT---NK-EHAVTMPCTWVMACAY-------APSGCAIACGG  125 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTS---EEEEEET--TTC---CE-EEEEECSSSCCCEEEE-------CTTSSEEEEES
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCC---eEEEEEC--CCC---Cc-ceEEecCCCCEEEEEE-------CCCCCEEEEee
Confidence            5889999999999999999999887   4555543  332   11 1111111233456666       89999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .|+.|++|++.......                     .......+.+|...|.+++|+|+ +..|++|+.|++|++||+
T Consensus       126 ~d~~i~v~~~~~~~~~~---------------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~  183 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNEN---------------------MAAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCALWDV  183 (354)
T ss_dssp             TTSEEEEEECCCCTTCC---------------------SGGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred             CCCCEEEEEEecccccc---------------------ccccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeC
Confidence            99999999986432111                     01222344579999999999999 568999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      .+++++..+.+|...|.+++|+|.. +.+|++|+.||+|++||+++++.......|...|.+++|+|++. ++++++.|+
T Consensus       184 ~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~  262 (354)
T 2pbi_B          184 ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSDDA  262 (354)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCC
Confidence            9999999999999999999999853 27999999999999999999887766667889999999999865 899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      .|++||++..         ..+..+..  +...+++++|+|++ .+|++|+.|+.|++||+.+++  .+..+.+|.+.|+
T Consensus       263 ~v~lwd~~~~---------~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~--~~~~l~~h~~~v~  330 (354)
T 2pbi_B          263 TCRLYDLRAD---------REVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGS--RVSILFGHENRVS  330 (354)
T ss_dssp             CEEEEETTTT---------EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS--EEEEECCCSSCEE
T ss_pred             eEEEEECCCC---------cEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCc--eEEEEECCCCcEE
Confidence            9999999976         33444433  34578999999998 999999999999999998887  5667889999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          454 SVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       454 ~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      +++|+|++.+ |++|+.||+|+||+
T Consensus       331 ~l~~spdg~~-l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGTA-FCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSC-EEEEETTSEEEEEC
T ss_pred             EEEECCCCCE-EEEEcCCCCEEecC
Confidence            9999999995 99999999999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-40  Score=315.11  Aligned_cols=289  Identities=20%  Similarity=0.261  Sum_probs=234.9

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+.|.+++|+|++++|++|+.++   .++||.+.....  ...+..|..    ...++.|       +|++++|++|+
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg---~v~lWd~~~~~~--~~~~~~~~~----~v~~~~~-------~~~~~~l~s~s   74 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSG---RVELWNYETQVE--VRSIQVTET----PVRAGKF-------IARKNWIIVGS   74 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTS---EEEEEETTTTEE--EEEEECCSS----CEEEEEE-------EGGGTEEEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCC---cEEEEECCCCce--eEEeeccCC----cEEEEEE-------eCCCCEEEEEC
Confidence            4778999999999999999999887   556665543321  111122222    2245665       68899999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .|+.|++||+.++..                           ...+.+|...|++++|+|+ +.+|++|+.|++|++||+
T Consensus        75 ~d~~i~vwd~~~~~~---------------------------~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEK---------------------------VVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             TTSEEEEEETTTCCE---------------------------EEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEG
T ss_pred             CCCEEEEEECCCCcE---------------------------EEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEEC
Confidence            999999999976432                           2245589999999999999 569999999999999999


Q ss_pred             CCC-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCC-CCCEEEEEeC
Q 010748          297 AAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH-AEHSFVVSLE  373 (502)
Q Consensus       297 ~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~-~~~~~~~~~~  373 (502)
                      .++ .+...+.+|...|.+++|+|.++.+|++|+.|++|++||++......... .+...+..+.|+|. ...++++|+.
T Consensus       127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence            887 56677899999999999999655899999999999999998776554333 34577999999874 2358999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      ||.|++||+++.         .++..+.+|...|++++|+|++ .+|++|+.||+|++||+.+.+  +...+..|...++
T Consensus       207 D~~i~iWd~~~~---------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~~~~~~~  274 (304)
T 2ynn_A          207 DLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSW  274 (304)
T ss_dssp             TSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC--EEEEECCSSSSEE
T ss_pred             CCeEEEEeCCCC---------ccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--eeeeccCCCccEE
Confidence            999999999986         7888999999999999999998 899999999999999999987  6777888889999


Q ss_pred             EEEEcCCCCcE-EEEEeCCCcEEEEECCCC
Q 010748          454 SVAFSEDSPFV-LAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       454 ~~~~spd~~~l-l~sg~~dg~i~vwd~~~~  482 (502)
                      +++|+|++... +++|+. ..+.+|++...
T Consensus       275 ~~~~~~~~~~~~~asg~~-~g~~~~~~~~~  303 (304)
T 2ynn_A          275 CIATHPTGRKNYIASGFD-NGFTVLSLGND  303 (304)
T ss_dssp             EEEECTTCGGGCEEEEET-TEEEEEECC--
T ss_pred             EEEECCCCCceEEEEecC-CceEEEEeccC
Confidence            99999988533 666654 55888887653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=316.76  Aligned_cols=308  Identities=22%  Similarity=0.354  Sum_probs=235.7

Q ss_pred             CCcc-ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC-CeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          137 EDSE-DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       137 ~~~~-~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      .|.. .|.+++|+|++++||+|+.++   .++||.......... .+...|.    ....+++|       +|++++||+
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~---~i~iw~~~~~~~~~~~~~~~~h~----~~v~~~~~-------sp~g~~l~s   78 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDR---RIRIWGTEGDSWICKSVLSEGHQ----RTVRKVAW-------SPCGNYLAS   78 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTS---CEEEEEEETTEEEEEEEECSSCS----SCEEEEEE-------CTTSSEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCC---eEEEEEcCCCcceeeeeeccccC----CcEEEEEE-------CCCCCEEEE
Confidence            3555 899999999999999999887   678887765421000 0111222    22367777       799999999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      |+.|+.|+||++....                         ......+.+|...|.+++|+|+ +++|++|+.|++|++|
T Consensus        79 ~s~D~~v~iw~~~~~~-------------------------~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iw  132 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDD-------------------------FECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVW  132 (345)
T ss_dssp             EETTSCEEEEEECCC--------------------------EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEE
T ss_pred             EECCCcEEEEEccCCC-------------------------eEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEE
Confidence            9999999999986421                         1123345689999999999999 6699999999999999


Q ss_pred             eCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc--cceEeecCCeeEEEeCCCCCCEEE
Q 010748          295 DVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       295 d~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~~  369 (502)
                      |+.++   .++..+.+|...|.+++|+|++ .+|++|+.|++|++|+++.....  .....|...|.+++|+|++. +|+
T Consensus       133 d~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~  210 (345)
T 3fm0_A          133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLA  210 (345)
T ss_dssp             EECTTSCEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred             ECCCCCCeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEE
Confidence            99876   4567788999999999999999 89999999999999999876532  33456788999999999865 899


Q ss_pred             EEeCCCcEEEEECCCCCCCCCC------CCCccceEEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC----
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDS------TSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ----  438 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~------~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~----  438 (502)
                      +++.||.|++|+..........      ....++..+.+ |...|.+++|+|.+ .+|++++.|+.|++|+.....    
T Consensus       211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~  289 (345)
T 3fm0_A          211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQ  289 (345)
T ss_dssp             EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTS
T ss_pred             EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcce
Confidence            9999999999997543221100      00122334444 88999999999998 889999999999999987542    


Q ss_pred             e---eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          439 P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       439 ~---~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +   .......+|...|++++|+|+++.+||+|+.||+|++|++.+++.+..
T Consensus       290 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          290 PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             CCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             eeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            1   112234689999999999999866799999999999999988776543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-38  Score=303.42  Aligned_cols=250  Identities=19%  Similarity=0.305  Sum_probs=216.3

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|++++||+|+.||.|+|||+.+...                           ...+..|..+|.+++
T Consensus        17 ~~~~f-------sp~~~~l~s~~~dg~v~lWd~~~~~~---------------------------~~~~~~~~~~v~~~~   62 (304)
T 2ynn_A           17 KGIDF-------HPTEPWVLTTLYSGRVELWNYETQVE---------------------------VRSIQVTETPVRAGK   62 (304)
T ss_dssp             EEEEE-------CSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEcCCCcEEEEECCCCce---------------------------eEEeeccCCcEEEEE
Confidence            57766       89999999999999999999975322                           223457889999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc-cceEeec
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVA  352 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~  352 (502)
                      |+|+ +++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||+++.... .....|.
T Consensus        63 ~~~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~  140 (304)
T 2ynn_A           63 FIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (304)
T ss_dssp             EEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred             EeCC-CCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence            9999 5699999999999999999999999999999999999999999 89999999999999999876443 3345688


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCC-CCCEEEEEeCCCcEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPL-VPNLLATGSTDKMVK  430 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~-~~~~l~t~s~dg~i~  430 (502)
                      ..|.+++|+|.+..++++|+.||.|++||++..         .+...+ ..|...+..+.|+|. ...+|++|+.|++|+
T Consensus       141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~  211 (304)
T 2ynn_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK  211 (304)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEETTCS---------SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC---------CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence            899999999976679999999999999999876         334444 456788999999873 237999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +||+++++  ++..+.+|...|.+++|+|+++ +|++|+.||.|+|||+.+++.+.....+
T Consensus       212 iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          212 IWDYQTKS--CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             EEETTTTE--EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             EEeCCCCc--cceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            99999887  6778889999999999999999 6999999999999999998887665443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-38  Score=311.44  Aligned_cols=299  Identities=22%  Similarity=0.334  Sum_probs=231.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccc--------------cCCCcceeeeecCC
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII--------------IPAFPLCMAWLDCP  202 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~  202 (502)
                      .|...|.+++|+|+|++||+|+. +   .++||.......  ......|...              ...+..+++|    
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~-~---~v~i~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~----  131 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCN-K---TTQVYRVSDGSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF----  131 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECB-S---CEEEEETTTCCE--EEEECC-----------------CCCCBEEEEEE----
T ss_pred             CCCCEEEEEEECCCCCEEEEEcC-C---cEEEEEecCCCE--EEEecCccccccccccccccccCCCceeEEEEEE----
Confidence            47889999999999999999863 3   456665543321  0111111100              0011345555    


Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                         +|+|++||+|+.|+.|+|||+.+..                           ....+.+|...|.+++|+|+ +.+|
T Consensus       132 ---s~dg~~l~s~~~d~~i~iwd~~~~~---------------------------~~~~~~~h~~~v~~~~~~p~-~~~l  180 (393)
T 1erj_A          132 ---SPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHEQDIYSLDYFPS-GDKL  180 (393)
T ss_dssp             ---CTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCSSCEEEEEECTT-SSEE
T ss_pred             ---CCCCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEccCCCCEEEEEEcCC-CCEE
Confidence               8999999999999999999997532                           22345689999999999999 5699


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-------EeecCCe
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-------WAVAADV  355 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~v  355 (502)
                      ++|+.|++|++||+.++++...+. +...+.+++|+|..+.+|++|+.||.|++||++++......       ..|...|
T Consensus       181 ~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          181 VSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV  259 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             EEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence            999999999999999999888876 56789999999944489999999999999999987654332       3577889


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC---CCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .+++|+|++. ++++|+.||.|++||+++......   .....+...+.+|...|.+++|+|++ .+|++|+.|+.|++|
T Consensus       260 ~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iw  337 (393)
T 1erj_A          260 YSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFW  337 (393)
T ss_dssp             EEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEE
T ss_pred             EEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEE
Confidence            9999999875 899999999999999987532110   00123456778999999999999998 899999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEcC------CCCcEEEEEeCCCcEEEEECCCC
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFSE------DSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~sp------d~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      |+.+++  .+..+.+|.+.|.+++|++      ++. +|++|+.||+|+||++...
T Consensus       338 d~~~~~--~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          338 DKKSGN--PLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             ETTTCC--EEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEEC
T ss_pred             ECCCCe--EEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECccccc
Confidence            999988  5667789999999999987      566 6999999999999998653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.3e-38  Score=299.88  Aligned_cols=287  Identities=20%  Similarity=0.349  Sum_probs=234.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++|+.++   .++||......  ....+..|..    ...+++|       +|++++|++|
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~--~~~~~~~h~~----~v~~~~~-------~~~~~~l~s~   83 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADK---LIKIWGAYDGK--FEKTISGHKL----GISDVAW-------SSDSNLLVSA   83 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCC--EEEEECCCSS----CEEEEEE-------CTTSSEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCC---eEEEEeCCCcc--cchhhccCCC----ceEEEEE-------cCCCCEEEEE
Confidence            45889999999999999999999887   45666543322  1111222322    2357777       7899999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|+.|++||+.+...                           ...+.+|...|.+++|+|+ +.+|++|+.|++|++||
T Consensus        84 ~~d~~i~vwd~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           84 SDDKTLKIWDVSSGKC---------------------------LKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             ETTSEEEEEETTTCCE---------------------------EEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEECCCCcE---------------------------EEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEE
Confidence            9999999999975332                           2234579999999999999 56999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCCCEEEEEeCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~d  374 (502)
                      +.+++++..+..|...|.+++|+|++ .+|++++.||.|++||+++.+...... .+...+.+++|+|++. ++++++.|
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d  213 (312)
T 4ery_A          136 VKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLD  213 (312)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETT
T ss_pred             CCCCEEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCC
Confidence            99999999999999999999999998 899999999999999999876554332 3456799999999875 89999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeE--EEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcE
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT--ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~--l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      |.|++||+++.         ..+..+.+|...+.+  ..+++.++.+|++|+.||.|++||+.+++  .+..+.+|...|
T Consensus       214 ~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v  282 (312)
T 4ery_A          214 NTLKLWDYSKG---------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVV  282 (312)
T ss_dssp             TEEEEEETTTT---------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC--EEEEECCCSSCE
T ss_pred             CeEEEEECCCC---------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch--hhhhhhccCCcE
Confidence            99999999986         677778888765433  34554444899999999999999999887  577888999999


Q ss_pred             EEEEEcCCCCcEEEEEe--CCCcEEEEECC
Q 010748          453 FSVAFSEDSPFVLAIGG--SKGKLEIWDTL  480 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~--~dg~i~vwd~~  480 (502)
                      .+++|+|+++ +|++++  .|+.|++|+..
T Consensus       283 ~~~~~~p~~~-~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          283 ISTACHPTEN-IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred             EEEeecCcCC-ceEEEEccCCccEEEecCC
Confidence            9999999999 577776  69999999863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-37  Score=299.84  Aligned_cols=288  Identities=17%  Similarity=0.294  Sum_probs=231.6

Q ss_pred             CCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCC---CCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          136 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGD---PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      ..|...|.+++|+|++ ++|++|+.++   .+++|.+.......   ...+..|..    ...++.|       +|++++
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~---~v~~W~~~~~~~~~~~~~~~~~~h~~----~v~~~~~-------s~dg~~   79 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDK---TLISWKLTGDDQKFGVPVRSFKGHSH----IVQDCTL-------TADGAY   79 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTS---EEEEEEEEEETTEEEEEEEEEECCSS----CEEEEEE-------CTTSSE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCc---cEEEecCCCCCccccccceEEeCCcc----cEEEEEE-------CCCCCE
Confidence            4589999999999975 8999999887   67888776433200   011222322    2256666       799999


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      |++|+.|++|+|||+.++..                           ...+.+|...|.+++|+|+ +.+|++|+.|++|
T Consensus        80 l~s~s~D~~v~~wd~~~~~~---------------------------~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i  131 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGET---------------------------YQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI  131 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEE---------------------------EEEEECCSSCEEEEEECTT-SCEEEEEETTSCE
T ss_pred             EEEEeCCCEEEEEECCCCCe---------------------------eEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeE
Confidence            99999999999999976432                           2245589999999999999 5699999999999


Q ss_pred             EEEeCCCCeeeEeeccCCCCeEEEEEcCCC-----CcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHS-----PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      ++||+. ++++..+.+|...|.++.|+|..     ..+|++++.|+.|++||+++.........|...|.+++|+|++. 
T Consensus       132 ~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-  209 (319)
T 3frx_A          132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-  209 (319)
T ss_dssp             EEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-
T ss_pred             EEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-
Confidence            999986 56778889999999999999864     24899999999999999998776666667899999999999865 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      +|++++.||.|++||+++.         ..+..+.. ...|.+++|+|++ .+|++++.+ .+++|++.....  +..+.
T Consensus       210 ~l~s~~~dg~i~iwd~~~~---------~~~~~~~~-~~~v~~~~~sp~~-~~la~~~~~-~i~v~~~~~~~~--~~~~~  275 (319)
T 3frx_A          210 LIASAGKDGEIMLWNLAAK---------KAMYTLSA-QDEVFSLAFSPNR-YWLAAATAT-GIKVFSLDPQYL--VDDLR  275 (319)
T ss_dssp             EEEEEETTCEEEEEETTTT---------EEEEEEEC-CSCEEEEEECSSS-SEEEEEETT-EEEEEEETTEEE--EEEEC
T ss_pred             EEEEEeCCCeEEEEECCCC---------cEEEEecC-CCcEEEEEEcCCC-CEEEEEcCC-CcEEEEeCcCee--eeccC
Confidence            8999999999999999986         56666664 4689999999998 888887755 599999987652  33322


Q ss_pred             --------CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          447 --------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       447 --------~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                              .|...+.+++|+|+|++ |++|+.||.|+|||+.++
T Consensus       276 ~~~~~~~~~~~~~v~~~~~spdg~~-l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          276 PEFAGYSKAAEPHAVSLAWSADGQT-LFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCCTTCCGGGCCCEEEEEECTTSSE-EEEEETTSCEEEEEEEEC
T ss_pred             ccccccccCcCcceeEEEECCCCCE-EEEeecCceEEEEEEeec
Confidence                    23567999999999994 899999999999999764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.6e-38  Score=312.46  Aligned_cols=250  Identities=22%  Similarity=0.331  Sum_probs=224.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|+.|       +|++++|++|+.||.|+|||+.++..                           ...+.+|...|++++
T Consensus       112 ~~~~~-------~p~~~~l~s~s~Dg~i~vwd~~~~~~---------------------------~~~l~~h~~~V~~v~  157 (410)
T 1vyh_C          112 TRVIF-------HPVFSVMVSASEDATIKVWDYETGDF---------------------------ERTLKGHTDSVQDIS  157 (410)
T ss_dssp             EEEEE-------CSSSSEEEEEESSSCEEEEETTTCCC---------------------------CEEECCCSSCEEEEE
T ss_pred             EEEEE-------cCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEeccCCcEEEEE
Confidence            67777       78999999999999999999976432                           234568999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      |+|+ +.+|++|+.|++|++||+.+++++.++.+|...|.+++|+|++ .+|++|+.|++|++||++++........|..
T Consensus       158 ~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~  235 (410)
T 1vyh_C          158 FDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE  235 (410)
T ss_dssp             ECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCc
Confidence            9998 5699999999999999999999999999999999999999998 8999999999999999999887776778889


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC-----------------
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-----------------  416 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-----------------  416 (502)
                      .|.++.|+|++. ++++|+.||.|++||+++.         .....+..|...|.+++|+|++                 
T Consensus       236 ~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (410)
T 1vyh_C          236 WVRMVRPNQDGT-LIASCSNDQTVRVWVVATK---------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  305 (410)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             cEEEEEECCCCC-EEEEEcCCCeEEEEECCCC---------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence            999999999865 8999999999999999886         6778889999999999999962                 


Q ss_pred             --CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          417 --PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       417 --~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                        +.+|++|+.|+.|++||++++.  ++..+.+|.+.|++++|+|++.+ |++|+.||.|++||+.+++++....+|.
T Consensus       306 ~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~~~~~~~~~~h~  380 (410)
T 1vyh_C          306 KPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHE  380 (410)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence              2689999999999999999887  67778889999999999999996 8899999999999999988877665543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-37  Score=301.90  Aligned_cols=305  Identities=18%  Similarity=0.298  Sum_probs=220.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.|+|+  +|++|+.++   .+++|.+......  .+.............+++|       +|++++||+|+
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~---~i~lw~~~~~~~~--~~~~~~~~~h~~~v~~v~~-------sp~~~~las~s   77 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDR---KIKLVSVKYDDFT--LIDVLDETAHKKAIRSVAW-------RPHTSLLAAGS   77 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSS---CEEEEECSSSCCE--EEEEECTTCCCSCEEEEEE-------CTTSSEEEEEE
T ss_pred             cCCCceeeeccCCC--EEEEEcCCC---EEEEEEecCCCeE--EEEEEecCCccCCEEEEEE-------CCCCCEEEEEe
Confidence            47889999999998  889998886   5677766543210  1111100001223367777       79999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .|+.|+||++......                    .........+.+|...|++++|+|+ +.+|++|+.|++|++||+
T Consensus        78 ~D~~v~iw~~~~~~~~--------------------~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           78 FDSTVSIWAKEESADR--------------------TFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             TTSCEEEEEC---------------------------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEEEC
T ss_pred             CCCcEEEEEcccCcCc--------------------cccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEec
Confidence            9999999998532100                    0011233456689999999999999 569999999999999999


Q ss_pred             CC----CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC--CCccceEeecCCeeEEEeCCCC-CCEEE
Q 010748          297 AA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWAVAADVESLAWDPHA-EHSFV  369 (502)
Q Consensus       297 ~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~~-~~~~~  369 (502)
                      ..    .+++..+.+|...|.+++|+|++ .+|++|+.|++|++||++..  ........|...|.+++|+|++ ...++
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence            43    25778889999999999999998 89999999999999998865  3344455788899999999974 34789


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNP  447 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~  447 (502)
                      +|+.|+.|++|+++........ .......+.. |...|.+++|++.  .+|++++.||.|+||+..++....... ...
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  292 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQ-EWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKVFAKRALC  292 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCE-EEEEEEECCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred             EEeCCCeEEEEEecCCCccccc-eeEEeeecccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence            9999999999999764210000 0022333444 8999999999974  589999999999999998765323333 356


Q ss_pred             CCC-cEEEEEEcC--CCCcEEEEEeCCCcEEEEECCC
Q 010748          448 KAG-AVFSVAFSE--DSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       448 ~~~-~v~~~~~sp--d~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      |.. .|.+++|+|  ++. +|++|+.||.|+||++.+
T Consensus       293 h~~~~v~~v~~~~~~~~~-~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTSCEEEEEEC-----C-CEEEEETTSEEEEEEC--
T ss_pred             cccceEEEEEEecCCCce-EEEEecCCCcEEEEEecc
Confidence            776 899999999  577 599999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-37  Score=324.45  Aligned_cols=293  Identities=18%  Similarity=0.267  Sum_probs=234.1

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+.++.|+|+|++|++++ .+   .+.+|...  .......+..|...    ..|++|       +|+|++||+|+.
T Consensus        17 ~~g~~~~~~~spdg~~l~~~~-~~---~v~l~~~~--~~~~~~~~~~h~~~----v~~~~~-------spdg~~lasg~~   79 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDKIQYCN-GT---SVYTVPVG--SLTDTEIYTEHSHQ----TTVAKT-------SPSGYYCASGDV   79 (611)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TT---EEEEEETT--CSSCCEEECCCSSC----EEEEEE-------CTTSSEEEEEET
T ss_pred             ccCceeEEeeCCCCCEEEeCC-CC---EEEEecCC--CcccCeEecCCCCc----eEEEEE-------CCCCcEEEEEeC
Confidence            356788999999999999987 33   44555443  33222344444332    256666       899999999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC----CcEEE
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD----KQVKI  293 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d----g~v~v  293 (502)
                      ||+|+|||+.....                         .....+.+|...|.+++|+|++ .+|++++.+    ++|++
T Consensus        80 d~~v~lWd~~~~~~-------------------------~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           80 HGNVRIWDTTQTTH-------------------------ILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             TSEEEEEESSSTTC-------------------------CEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEE
T ss_pred             CCCEEEeECCCCcc-------------------------eeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEE
Confidence            99999999864321                         1122345799999999999994 578777765    46888


Q ss_pred             EeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      ||  ++++...+.+|...|++++|+|+++..|++|+.|++|++||.+..+....+..|...|.+++|+|++. ++++++.
T Consensus       134 wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s~  210 (611)
T 1nr0_A          134 FD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGG  210 (611)
T ss_dssp             TT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             ee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC-EEEEEEC
Confidence            87  56677889999999999999999856799999999999999987766655667889999999999865 8999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEe-------ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE-----
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-----  441 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~-----  441 (502)
                      |+.|++||+.++         .....+.       +|...|.+++|+|++ .+|++++.|++|++||+.+++...     
T Consensus       211 D~~i~lwd~~~g---------~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          211 DGTIVLYNGVDG---------TKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             TSCEEEEETTTC---------CEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCcEEEEECCCC---------cEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence            999999999876         4444552       799999999999998 999999999999999998765321     


Q ss_pred             ------------------------------------EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          442 ------------------------------------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       442 ------------------------------------~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                                                          ...+.+|...|++++|+|+++ .|++++.|+.|++||+.++...
T Consensus       281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEE
T ss_pred             CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCcee
Confidence                                                234467899999999999999 5999999999999999988765


Q ss_pred             cc
Q 010748          486 SN  487 (502)
Q Consensus       486 ~~  487 (502)
                      ..
T Consensus       360 ~~  361 (611)
T 1nr0_A          360 RV  361 (611)
T ss_dssp             EC
T ss_pred             ee
Confidence            43

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-37  Score=297.54  Aligned_cols=256  Identities=21%  Similarity=0.343  Sum_probs=222.1

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..+++|.+.   ..+++.+|++|+.|++|+||++....                         ......+.+|...|.++
T Consensus        35 V~~v~~~~~---~~~~~~~l~tgs~D~~v~vW~~~~~~-------------------------~~~~~~l~gh~~~v~~~   86 (321)
T 3ow8_A           35 IWSVAWGTN---KKENSETVVTGSLDDLVKVWKWRDER-------------------------LDLQWSLEGHQLGVVSV   86 (321)
T ss_dssp             EEEEEEC----------CEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCSSCEEEE
T ss_pred             EEEEEEecC---CCCCCCEEEEEcCCCCEEEEECCCCC-------------------------eeeeeeeccCCCCEEEE
Confidence            378888421   11357899999999999999986421                         11223456899999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      +|+++ ..++++|+.|++|++||+.+++++..+..|...+.+++|+|++ .+|++|+.+|.|++|++++.........+.
T Consensus        87 ~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~  164 (321)
T 3ow8_A           87 DISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRG  164 (321)
T ss_dssp             EECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred             EECCC-CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence            99999 5699999999999999999999999999999999999999999 899999999999999999887766566677


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      ..+.+++|+|++. ++++|+.||.|++||++++         ..+..+.+|..+|++++|+|++ .+|++|+.|+.|++|
T Consensus       165 ~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iw  233 (321)
T 3ow8_A          165 KFILSIAYSPDGK-YLASGAIDGIINIFDIATG---------KLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIY  233 (321)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEETTTT---------EEEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEE
T ss_pred             ceEEEEEECCCCC-EEEEEcCCCeEEEEECCCC---------cEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEE
Confidence            8899999999875 8999999999999999986         7788899999999999999998 899999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      |+++..  ....+.+|...|.+++|+|++. .|++|+.|++|+|||+.+++++.....+.
T Consensus       234 d~~~~~--~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~  290 (321)
T 3ow8_A          234 DVQHAN--LAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQ  290 (321)
T ss_dssp             ETTTCC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ECCCcc--eeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence            999887  5677889999999999999999 59999999999999999999888776654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.3e-37  Score=297.14  Aligned_cols=290  Identities=18%  Similarity=0.282  Sum_probs=224.3

Q ss_pred             CCccccccccc-----cC-CCceEEEEEecCCcceeEEEEEecCCCCCC-----CeeeeeccccCCCcceeeeecCCCCC
Q 010748          137 EDSEDLEDMTI-----NP-NDAVIVCARNEDDVSHLEVYILEESDGGDP-----NLYVHHHIIIPAFPLCMAWLDCPLKD  205 (502)
Q Consensus       137 ~~~~~v~~~~~-----~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~  205 (502)
                      .|...|.++.|     +| ++++|++|+.++   .++||.+........     ..+..|.    ....+++|       
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~---~v~iWd~~~~~~~~~~~~~~~~l~~h~----~~V~~~~~-------   84 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDK---TVMIWKLYEEEQNGYFGIPHKALTGHN----HFVSDLAL-------   84 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTS---CEEEEEECSSCCSSBSEEEEEEECCCS----SCEEEEEE-------
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCC---EEEEEECCcCCcccccccccchhccCC----CceEEEEE-------
Confidence            48889999999     76 899999999887   678888765432100     0111222    22356666       


Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|++.+|++|+.|++|+|||+.++..                           ...+.+|...|++++|+|+ +.+|++|
T Consensus        85 ~~~~~~l~s~s~D~~v~lwd~~~~~~---------------------------~~~~~~h~~~v~~v~~sp~-~~~l~s~  136 (343)
T 2xzm_R           85 SQENCFAISSSWDKTLRLWDLRTGTT---------------------------YKRFVGHQSEVYSVAFSPD-NRQILSA  136 (343)
T ss_dssp             CSSTTEEEEEETTSEEEEEETTSSCE---------------------------EEEEECCCSCEEEEEECSS-TTEEEEE
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcE---------------------------EEEEcCCCCcEEEEEECCC-CCEEEEE
Confidence            78999999999999999999976432                           2234589999999999999 5699999


Q ss_pred             ecCCcEEEEeCCCCeeeEee---ccCCCCeEEEEEcCCCC---------cEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          286 SADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSP---------QILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~---------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      +.|++|++||+... ....+   ..|...|.+++|+|.+.         .+|++++.||+|++||.+ .........|..
T Consensus       137 ~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~  214 (343)
T 2xzm_R          137 GAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHES  214 (343)
T ss_dssp             ETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSS
T ss_pred             cCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccc
Confidence            99999999999844 33333   37899999999999862         589999999999999954 333334557888


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .|.+++|+|++. +|++|+.||.|++||++..        ..+...+ .+...|.+++|+|++ .++++ +.|+.|++|+
T Consensus       215 ~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~--------~~~~~~~-~~~~~v~~v~~sp~~-~~la~-~~d~~v~iw~  282 (343)
T 2xzm_R          215 NVNHLSISPNGK-YIATGGKDKKLLIWDILNL--------TYPQREF-DAGSTINQIAFNPKL-QWVAV-GTDQGVKIFN  282 (343)
T ss_dssp             CEEEEEECTTSS-EEEEEETTCEEEEEESSCC--------SSCSEEE-ECSSCEEEEEECSSS-CEEEE-EESSCEEEEE
T ss_pred             cceEEEECCCCC-EEEEEcCCCeEEEEECCCC--------cccceee-cCCCcEEEEEECCCC-CEEEE-ECCCCEEEEE
Confidence            999999999875 8999999999999999654        1333333 355679999999987 66654 4588899999


Q ss_pred             CCCCCeeEEEEec-----------CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          434 LSNNQPSCIASRN-----------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       434 ~~~~~~~~~~~~~-----------~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +.+.+...+..+.           +|...|.+++|+|++++ |++|+.||.|++|++.++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          283 LMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             SSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC-EEEEETTSEEEEEEEEEEE
T ss_pred             eCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe-EEEecCCceEEEEEEEccC
Confidence            9877644333333           67788999999999995 8999999999999987653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-38  Score=311.98  Aligned_cols=301  Identities=17%  Similarity=0.281  Sum_probs=242.8

Q ss_pred             CccccccccccCCCc-eEEEE----------EecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCC
Q 010748          138 DSEDLEDMTINPNDA-VIVCA----------RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR  206 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~-~l~~~----------~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s  206 (502)
                      +...|.+++|+|+++ +|++|          +.++   .++||.+.............|    .....|++|       +
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~---~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~-------s   76 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDS---SLELWSLLAADSEKPIASLQV----DSKFNDLDW-------S   76 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCC---CCEEEESSSGGGCSCSCCCCC----SSCEEEEEE-------C
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCC---eEEEEEccCCCCCcEEEEEec----CCceEEEEE-------C
Confidence            346799999999987 88888          4444   567777765432111111122    233467877       7


Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      |++++|++|+.||.|+||++......                       ......+.+|...|++++|+|+++.+|++|+
T Consensus        77 ~~~~~l~~~~~dg~v~vw~~~~~~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  133 (416)
T 2pm9_A           77 HNNKIIAGALDNGSLELYSTNEANNA-----------------------INSMARFSNHSSSVKTVKFNAKQDNVLASGG  133 (416)
T ss_dssp             SSSSCEEEEESSSCEEEECCSSTTSC-----------------------CCEEEECCCSSSCCCEEEECSSSTTBEEEEC
T ss_pred             CCCCeEEEEccCCeEEEeeccccccc-----------------------ccchhhccCCccceEEEEEcCCCCCEEEEEc
Confidence            89999999999999999999752110                       1133345689999999999998667999999


Q ss_pred             cCCcEEEEeCCCCe------eeEe---eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee------
Q 010748          287 ADKQVKIWDVAAGK------CNLT---LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV------  351 (502)
Q Consensus       287 ~dg~v~vwd~~~~~------~~~~---~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------  351 (502)
                      .||.|++||+.+++      ....   +..|...|.+++|+|++..+|++++.||.|++||+++.+.......+      
T Consensus       134 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  213 (416)
T 2pm9_A          134 NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI  213 (416)
T ss_dssp             SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCC
T ss_pred             CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccccc
Confidence            99999999999886      3333   36799999999999996589999999999999999987765544333      


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCC---cEEEEECCCCCCCCCCCCCccceEEe-ccCCCeeEEEEcC-CCCCEEEEEeCC
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNP-LVPNLLATGSTD  426 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp-~~~~~l~t~s~d  426 (502)
                      ...+.+++|+|++..++++++.++   .|++||+++.        ..++..+. +|...|++++|+| ++ .+|++++.|
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~d  284 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA--------NTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRD  284 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST--------TSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESS
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC--------CCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCC
Confidence            678999999999877999999998   9999999986        25566677 8999999999999 55 999999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      |.|++||+.+++  .+..+..|.+.|++++|+|+++.+|++++.||.|+||++.+.....
T Consensus       285 g~v~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          285 NTVLLWNPESAE--QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             SEEEEECSSSCC--EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred             CCEEEeeCCCCc--cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence            999999999887  5677778999999999999994479999999999999998876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-36  Score=300.24  Aligned_cols=300  Identities=21%  Similarity=0.298  Sum_probs=232.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .+...+....+.+++..+++++.++     .|++|+...+   ...............+++|       +|++++|++|+
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~-----~v~lw~~~~~---~~~~~~~~~~~~~v~~v~~-------s~~~~~l~~~~  153 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALER-----NVYVWNADSG---SVSALAETDESTYVASVKW-------SHDGSFLSVGL  153 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETT-----EEEEEETTTC---CEEEEEECCTTCCEEEEEE-------CTTSSEEEEEE
T ss_pred             CCcCCceEEEEeecCCCEEEEECCC-----eEEEeeCCCC---cEeEeeecCCCCCEEEEEE-------CCCCCEEEEEC
Confidence            4555555555555556677888777     5555555444   2221111112344578888       78999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .+|.|+||++.+...                           ...+.+|...|.+++|++   ++|++|+.||.|++||+
T Consensus       154 ~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~  203 (401)
T 4aez_A          154 GNGLVDIYDVESQTK---------------------------LRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDV  203 (401)
T ss_dssp             TTSCEEEEETTTCCE---------------------------EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEET
T ss_pred             CCCeEEEEECcCCeE---------------------------EEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEec
Confidence            999999999975322                           223457999999999954   49999999999999999


Q ss_pred             C-CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe--C
Q 010748          297 A-AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL--E  373 (502)
Q Consensus       297 ~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~  373 (502)
                      . .+..+..+.+|...|.+++|+|++ .+|++|+.||.|++||+++.........+...|.+++|+|++..++++++  .
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          204 RIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred             ccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence            8 567788889999999999999988 89999999999999999987776656678899999999999888888876  7


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE--eCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG--STDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      ||.|++||++++         .++..+. |...|++++|+|++ .+|+++  +.||.|++|++.++.......+.+|.+.
T Consensus       283 d~~i~i~d~~~~---------~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~  351 (401)
T 4aez_A          283 DKQIHFWNAATG---------ARVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR  351 (401)
T ss_dssp             TCEEEEEETTTC---------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred             CCEEEEEECCCC---------CEEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence            999999999986         5555554 67789999999998 777774  4899999999998876667778899999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       452 v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      |.+++|+|++. +|++++.||.|++|++.+++.+.+.......
T Consensus       352 v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  393 (401)
T 4aez_A          352 VLYSALSPDGR-ILSTAASDENLKFWRVYDGDHVKRPIPITKT  393 (401)
T ss_dssp             CCEEEECTTSS-EEEEECTTSEEEEEECCC-------------
T ss_pred             EEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccccccccCC
Confidence            99999999999 5999999999999999999988776654443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2e-36  Score=317.40  Aligned_cols=299  Identities=15%  Similarity=0.156  Sum_probs=236.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|+|++||+|+.++   .++||............+..|    .....+++|       +|++++||++
T Consensus        56 ~~h~~~v~~~~~spdg~~lasg~~d~---~v~lWd~~~~~~~~~~~~~~~----~~~v~~v~f-------s~dg~~l~~~  121 (611)
T 1nr0_A           56 TEHSHQTTVAKTSPSGYYCASGDVHG---NVRIWDTTQTTHILKTTIPVF----SGPVKDISW-------DSESKRIAAV  121 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---EEEEEESSSTTCCEEEEEECS----SSCEEEEEE-------CTTSCEEEEE
T ss_pred             cCCCCceEEEEECCCCcEEEEEeCCC---CEEEeECCCCcceeeEeeccc----CCceEEEEE-------CCCCCEEEEE
Confidence            45888999999999999999999887   566666543322000011122    223367777       8999999998


Q ss_pred             cCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          216 SME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       216 ~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      +.+    +.|++||...  .                           ...+.+|...|++++|+|++..+|++|+.|++|
T Consensus       122 ~~~~~~~~~v~~wd~~~--~---------------------------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v  172 (611)
T 1nr0_A          122 GEGRERFGHVFLFDTGT--S---------------------------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  172 (611)
T ss_dssp             ECCSSCSEEEEETTTCC--B---------------------------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             ECCCCceeEEEEeeCCC--C---------------------------cceecCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence            865    4788887431  1                           123458999999999999966679999999999


Q ss_pred             EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-------eecCCeeEEEeCCCC
Q 010748          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHA  364 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~  364 (502)
                      ++||..++++..++.+|...|.+++|+|++ .+|++|+.|++|++||++++.......       .|...|.+++|+|++
T Consensus       173 ~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg  251 (611)
T 1nr0_A          173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  251 (611)
T ss_dssp             EEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             EEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence            999999999999999999999999999999 899999999999999998876544331       688899999999987


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCC----------------------------------CCCccceEEeccCCCeeEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDS----------------------------------TSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~----------------------------------~~~~~~~~~~~h~~~v~~l  410 (502)
                      . ++++++.|++|++||++++......                                  ....+...+.+|...|+++
T Consensus       252 ~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l  330 (611)
T 1nr0_A          252 T-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL  330 (611)
T ss_dssp             S-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             C-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE
Confidence            5 8999999999999999875321000                                  0011234556899999999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      +|+|++ .+|++++.|++|++||+.++..  ...+ ..|...|.+++|++++.  |++++.|+.+++|++.++..
T Consensus       331 ~~spdg-~~l~s~s~D~~v~~Wd~~~~~~--~~~~~~~h~~~v~~~~~s~~~~--l~s~s~d~~v~~w~~~~~~~  400 (611)
T 1nr0_A          331 SSSADG-KTLFSADAEGHINSWDISTGIS--NRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVVPAGGSGV  400 (611)
T ss_dssp             EECTTS-SEEEEEETTSCEEEEETTTCCE--EECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEECSSSSSS
T ss_pred             EEeCCC-CEEEEEeCCCcEEEEECCCCce--eeecccCCcceEEEEEECCCCc--EEEEEcCCceEEeecCCccc
Confidence            999998 9999999999999999998873  3333 57889999999998874  78899999999999877543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=296.98  Aligned_cols=296  Identities=17%  Similarity=0.225  Sum_probs=228.8

Q ss_pred             CCccccccccccCCCceEE-EEEecCCcceeEEEEEecCCCCCCCee-eeeccccCCCcceeeeecCCCCCCCC---CCE
Q 010748          137 EDSEDLEDMTINPNDAVIV-CARNEDDVSHLEVYILEESDGGDPNLY-VHHHIIIPAFPLCMAWLDCPLKDREK---GNF  211 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~-~~~~~~~~~~l~v~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~  211 (502)
                      .|...|.+++|+|++..++ +|+.+.....+.||.+.....  ..+. ..|    .....|++|       +|+   +++
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~--~~~~~~~~----~~~v~~~~~-------~~~~~~~~~   82 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL--KLLREIEK----AKPIKCGTF-------GATSLQQRY   82 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE--EEEEEEEE----SSCEEEEEC-------TTCCTTTCC
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc--cceeeecc----cCcEEEEEE-------cCCCCCCce
Confidence            4888999999999996555 554411123677777765432  0111 123    333467777       565   799


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEe------ccCCCcEEEEE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW------NKEFRNILASA  285 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------~~~~~~~l~sg  285 (502)
                      |++|+.||.|++|++....                          .....+.+|...|.+++|      +|+ +.+|++|
T Consensus        83 l~~~~~dg~i~iwd~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~  135 (357)
T 3i2n_A           83 LATGDFGGNLHIWNLEAPE--------------------------MPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTG  135 (357)
T ss_dssp             EEEEETTSCEEEECTTSCS--------------------------SCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEE
T ss_pred             EEEecCCCeEEEEeCCCCC--------------------------ccEEEEEecccceEEEeeccccccCCC-ccEEEEE
Confidence            9999999999999997543                          122344579999999955      667 5699999


Q ss_pred             ecCCcEEEEeCCCCe-eeEeeccCCC----CeEEEE----EcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCee
Q 010748          286 SADKQVKIWDVAAGK-CNLTLEHHTD----KVQAVA----WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       286 s~dg~v~vwd~~~~~-~~~~~~~h~~----~v~~l~----~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  356 (502)
                      +.||.|++||+.+++ ++..+..|.+    .|.++.    |+|++ .+|++++.+|.|++||+++..... ...+...|.
T Consensus       136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~  213 (357)
T 3i2n_A          136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVC  213 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEE-EEECSSCEE
T ss_pred             eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceee-ecCCCCceE
Confidence            999999999999887 6777766554    899998    67888 899999999999999999877643 567788999


Q ss_pred             EEEeCC---CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce-----EEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          357 SLAWDP---HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-----TLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       357 ~v~~~~---~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      +++|+|   ++. ++++++.+|.|++||+++.         .+..     .+..|...|++++|+|++..+|++++.||.
T Consensus       214 ~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          214 SLEFDRKDISMN-KLVATSLEGKFHVFDMRTQ---------HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             EEEESCSSSSCC-EEEEEESTTEEEEEEEEEE---------ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             EEEcCCCCCCCC-EEEEECCCCeEEEEeCcCC---------CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence            999999   554 8999999999999999876         3333     334899999999999998448999999999


Q ss_pred             EEEEECCCCCe-----------------eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          429 VKLWDLSNNQP-----------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       429 i~vwd~~~~~~-----------------~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      |++||++....                 ..+..+..|.+.|++++|+|++++++++++.||.|+||++.+...
T Consensus       284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            99999986432                 357778889999999999999997444899999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.4e-37  Score=299.05  Aligned_cols=306  Identities=15%  Similarity=0.191  Sum_probs=236.0

Q ss_pred             CCCccccccccccCC----CceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          136 DEDSEDLEDMTINPN----DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~----~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      +.|...|.+++|+|+    ..++++++.++   .+.||.+..... ...+..|..........+++|.+.   ..+++++
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~---~v~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~   87 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSN---RVTLYECHSQGE-IRLLQSYVDADADENFYTCAWTYD---SNTSHPL   87 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETT---EEEEEEECGGGC-EEEEEEEECSCTTCCEEEEEEEEC---TTTCCEE
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCC---EEEEEEcCCCcE-EEeeeeccccCCCCcEEEEEeccC---CCCCCCE
Confidence            358899999999994    55666666665   567777764432 112223332223345578888421   0122789


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      |++|+.||.|+|||+.+...                           ...+.+|...|.+++|+|..+.+|++|+.||.|
T Consensus        88 l~~~~~dg~i~v~d~~~~~~---------------------------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i  140 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQC---------------------------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL  140 (366)
T ss_dssp             EEEEETTCEEEEECTTTCCE---------------------------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             EEEecCCCEEEEEEchhceE---------------------------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            99999999999999975332                           223457999999999999437799999999999


Q ss_pred             EEEeCCCCeeeEee---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-------------------
Q 010748          292 KIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------------------  349 (502)
Q Consensus       292 ~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------------  349 (502)
                      ++||+.+++.+..+   ..|...|.+++|+|++ .+|++++.||.|++||+++........                   
T Consensus       141 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            99999999999888   7899999999999998 899999999999999998754332111                   


Q ss_pred             ---------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC-----CCCCCccceEEeccCCCeeEEEEcCC
Q 010748          350 ---------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       350 ---------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                               .+...|.+++|+   +.++++++.+|.|++||+++.....     .......+..+..|...|++++|+|+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD  296 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC
T ss_pred             ccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC
Confidence                     177889999998   2489999999999999998763210     00011346777889999999999998


Q ss_pred             --CCCEEEEEeCCCcEEEEECCCCCee--EEEEecCC--CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          416 --VPNLLATGSTDKMVKLWDLSNNQPS--CIASRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       416 --~~~~l~t~s~dg~i~vwd~~~~~~~--~~~~~~~~--~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                        + .+|++|+.||.|++||+.++++.  ....+..|  ...|++++|+|+++ +|++++.||.|++||+.+
T Consensus       297 ~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          297 FWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             CCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence              7 99999999999999999987642  34455666  79999999999999 599999999999999853

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.8e-36  Score=292.06  Aligned_cols=250  Identities=21%  Similarity=0.298  Sum_probs=215.8

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .++.|       +|++++|++|+.||.|+|||+.+...                           ...+..|...|.+++
T Consensus        59 ~~~~~-------s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------------~~~~~~~~~~v~~~~  104 (340)
T 1got_B           59 YAMHW-------GTDSRLLLSASQDGKLIIWDSYTTNK---------------------------VHAIPLRSSWVMTCA  104 (340)
T ss_dssp             EEEEE-------CTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECSSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEeCCCcEEEEECCCCCc---------------------------ceEeecCCccEEEEE
Confidence            57777       79999999999999999999875332                           223346889999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (502)
                      |+|+ +.+|++|+.|+.|++|++.++    +....+.+|...|.++.|++++  .+++++.|++|++||++++.......
T Consensus       105 ~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~  181 (340)
T 1got_B          105 YAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEc
Confidence            9999 569999999999999999875    4567788999999999999887  58999999999999999888776666


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      .|...|.+++|+|++. ++++|+.||.|++||+++.         .+...+.+|...|++++|+|++ .+|++|+.||+|
T Consensus       182 ~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v  250 (340)
T 1got_B          182 GHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-NAFATGSDDATC  250 (340)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             CCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCC---------eeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcE
Confidence            7889999999999765 8999999999999999986         6788899999999999999998 999999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ++||+++.+.........+...|.+++|+|+++ +|++|+.||.|++||+.++..+....+|.
T Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~  312 (340)
T 1got_B          251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             EEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEECCCCcEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCC
Confidence            999999887544444444556899999999999 59999999999999999988776655543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.5e-35  Score=284.73  Aligned_cols=288  Identities=16%  Similarity=0.293  Sum_probs=236.1

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.|+|++++|++++ ++   .+.+|.+....... .+.............++.|       +|++++|++|+
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg---~i~iw~~~~~~~~~-~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~  116 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KG---CVKVWDISHPGNKS-PVSQLDCLNRDNYIRSCKL-------LPDGCTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BS---EEEEEETTSTTCCS-CSEEEECSCTTSBEEEEEE-------CTTSSEEEEEE
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CC---eEEEEECCCCCcee-eeecccccCCCCcEEEEEE-------cCCCCEEEEEc
Confidence            4788999999999999999998 65   56666655433211 1111110112233467777       78999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .+|.|++|++.....                         .....+..|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus       117 ~d~~i~~~d~~~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A          117 EASTLSIWDLAAPTP-------------------------RIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             SSSEEEEEECCCC---------------------------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEECCCCCc-------------------------ceeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeC
Confidence            999999999975321                         122344578899999999998 669999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      .+++.+..+..|...|.+++|+|++ .+|++++.||.|++||+++.+... ...+...+.+++|+|++. ++++++.+|.
T Consensus       171 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~v~~~~~s~~~~-~l~~~~~~~~  247 (337)
T 1gxr_A          171 HNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPTGE-WLAVGMESSN  247 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCCceeeeeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEe-eecCCCceEEEEECCCCC-EEEEEcCCCc
Confidence            9999999999999999999999998 899999999999999999876554 456788899999999865 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      |++||+++.          ....+..|...|.+++|+|++ .+|++++.||.|++|++.+++..  . ...|...|.+++
T Consensus       248 i~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~--~-~~~~~~~v~~~~  313 (337)
T 1gxr_A          248 VEVLHVNKP----------DKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASI--F-QSKESSSVLSCD  313 (337)
T ss_dssp             EEEEETTSS----------CEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE--E-EEECSSCEEEEE
T ss_pred             EEEEECCCC----------CeEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEE--E-EecCCCcEEEEE
Confidence            999999875          245678899999999999998 89999999999999999998743  2 234678899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECC
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      |+|+++ .|++++.||.|++|++.
T Consensus       314 ~s~~~~-~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          314 ISVDDK-YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ECTTSC-EEEEEETTSCEEEEEEE
T ss_pred             ECCCCC-EEEEecCCCeEEEEEEe
Confidence            999999 58899999999999973

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-37  Score=304.89  Aligned_cols=304  Identities=19%  Similarity=0.279  Sum_probs=240.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCe--eeeeccccCCCcceeeeecCCCCCCCC-CCEEE
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNL--YVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMA  213 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~la  213 (502)
                      .|...|.+++|+|++++|++|+.++   .+.+|.+.........+  +..|    .....+++|       +|+ +++|+
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~~l~  130 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNG---SLELYSTNEANNAINSMARFSNH----SSSVKTVKF-------NAKQDNVLA  130 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSS---CEEEECCSSTTSCCCEEEECCCS----SSCCCEEEE-------CSSSTTBEE
T ss_pred             ecCCceEEEEECCCCCeEEEEccCC---eEEEeecccccccccchhhccCC----ccceEEEEE-------cCCCCCEEE
Confidence            4778899999999999999999886   56777665522111011  1222    233467777       677 89999


Q ss_pred             EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      +|+.||.|++||+..........                  ..........|...|.+++|+|+++.+|++|+.||.|++
T Consensus       131 s~~~dg~v~iwd~~~~~~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  192 (416)
T 2pm9_A          131 SGGNNGEIFIWDMNKCTESPSNY------------------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI  192 (416)
T ss_dssp             EECSSSCEEBCBTTTTSSCTTTC------------------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred             EEcCCCeEEEEECCCCccccccc------------------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence            99999999999998654111000                  001112335799999999999997789999999999999


Q ss_pred             EeCCCCeeeEeeccC------CCCeEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCC-CccceE-eecCCeeEEEeCC
Q 010748          294 WDVAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLSGSFDR---SVVMKDARIST-HSGFKW-AVAADVESLAWDP  362 (502)
Q Consensus       294 wd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~~-~~~~~~-~~~~~v~~v~~~~  362 (502)
                      ||+.+++++..+..|      ...|.+++|+|++..+|++++.++   .|++||+++.. ...... .|...|.+++|+|
T Consensus       193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (416)
T 2pm9_A          193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCH  272 (416)
T ss_dssp             EETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECS
T ss_pred             EECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCC
Confidence            999999999988776      789999999999878999999999   99999999864 444444 6889999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      .+..++++++.||.|++||+++.         .++..+..|...|++++|+|+++.+|++++.|+.|++|++.+......
T Consensus       273 ~~~~~l~s~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          273 QDEHLLLSSGRDNTVLLWNPESA---------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             SCSSCEEEEESSSEEEEECSSSC---------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             CCCCeEEEEeCCCCEEEeeCCCC---------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence            44568999999999999999986         778889999999999999999878999999999999999987642111


Q ss_pred             ---------------EEe------------------cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          443 ---------------ASR------------------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       443 ---------------~~~------------------~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                                     ...                  ..|..++.+++|+|+|+ +|++|+.||.|+||++.+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          344 EQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             C----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCBCCCCC
T ss_pred             cccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-EEEEeCCCCeEEEEEeccC
Confidence                           000                  11566788999999999 5999999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.4e-36  Score=312.67  Aligned_cols=278  Identities=24%  Similarity=0.381  Sum_probs=231.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++++.++   .+++|..+....  ..+.. |    .....+++|       +|++++|++|
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~---~i~~w~~~~~~~--~~~~~-~----~~~v~~~~~-------s~~g~~l~~~  362 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDK---TVKLWNRNGQHL--QTLTG-H----SSSVWGVAF-------SPDGQTIASA  362 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSCEE--EEECC-C----SSCEEEEEE-------CTTSSEEEEE
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCCCCee--EEEeC-C----CCCEEEEEE-------CCCCCEEEEE
Confidence            35778999999999999999999876   566665432211  11111 2    222355655       7999999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.+|.|++|+...                            .....+.+|...|.+++|+|+ +.+|++|+.|+.|++||
T Consensus       363 ~~dg~v~~~~~~~----------------------------~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~  413 (577)
T 2ymu_A          363 SDDKTVKLWNRNG----------------------------QLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN  413 (577)
T ss_dssp             ETTSEEEEEETTC----------------------------CEEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEEC
T ss_pred             eCCCEEEEEcCCC----------------------------CEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEe
Confidence            9999999999642                            122234579999999999999 56899999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      . +++.+..+.+|...|++++|+|++ .+|++++.|++|++|+... +.......|...|.+++|+|++. ++++++.|+
T Consensus       414 ~-~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~-~las~~~d~  489 (577)
T 2ymu_A          414 R-NGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDK  489 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSC-EEEEEETTS
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCC
Confidence            5 578888999999999999999999 8999999999999999753 44444667889999999999876 899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|++||.. +         ..+..+.+|...|++++|+|++ .+|++++.||.|+|||.. ++  ++..+.+|.+.|+++
T Consensus       490 ~i~iw~~~-~---------~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~-~~--~~~~~~~h~~~v~~~  555 (577)
T 2ymu_A          490 TVKLWNRN-G---------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGV  555 (577)
T ss_dssp             EEEEEETT-S---------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-SC--EEEEEECCSSCEEEE
T ss_pred             EEEEEcCC-C---------CEEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCC-CC--EEEEEcCCCCCEEEE
Confidence            99999964 2         6788899999999999999998 899999999999999964 44  567788999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEE
Q 010748          456 AFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       456 ~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      +|+|++++ |++++.|++|++||
T Consensus       556 ~fs~dg~~-l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          556 AFSPDGQT-IASASSDKTVKLWN  577 (577)
T ss_dssp             EECTTSSC-EEEEETTSCEEEEC
T ss_pred             EEcCCCCE-EEEEeCCCEEEEeC
Confidence            99999996 88999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-36  Score=297.29  Aligned_cols=252  Identities=19%  Similarity=0.216  Sum_probs=203.4

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecC------CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSM------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD  267 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  267 (502)
                      .|++|       +|||++||+|+.      |+.|++|+...+....                       .......+|..
T Consensus        46 ~~v~f-------SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-----------------------~~~~~~~~~~~   95 (357)
T 4g56_B           46 GAVRY-------RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-----------------------SLCTAGVQTEA   95 (357)
T ss_dssp             EEEEE-------CSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-----------------------GGCSEEEECSS
T ss_pred             EEEEE-------CCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-----------------------eEecccCCCCC
Confidence            56666       899999999997      6788899876543221                       12223346889


Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeE----eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      .|++++|+|+ + .+++++.||+|+|||+.+++...    ...+|...|++++|+|++ ++|++|+.|++|++||+++++
T Consensus        96 ~V~~~~~s~d-~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~  172 (357)
T 4g56_B           96 GVTDVAWVSE-K-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKA  172 (357)
T ss_dssp             CEEEEEEETT-T-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTE
T ss_pred             CEEEEEEcCC-C-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc
Confidence            9999999998 4 56678899999999999886543    334799999999999999 899999999999999999988


Q ss_pred             CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE
Q 010748          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ....+..|...|.+++|+|++..++++++.||.|++||++++..       ........|...+++++|+|+++.+|++|
T Consensus       173 ~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-------~~~~~~~~~~~~v~~v~~sp~~~~~la~g  245 (357)
T 4g56_B          173 VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP-------ATRIDFCASDTIPTSVTWHPEKDDTFACG  245 (357)
T ss_dssp             EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC-------BCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce-------eeeeeeccccccccchhhhhcccceEEEe
Confidence            77766778899999999998877899999999999999998732       22333456778899999999877899999


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +.|+.|++||+++++  ++..+.+|...|++++|+|++..+|++|+.||+|+|||+.+++.++.
T Consensus       246 ~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          246 DETGNVSLVNIKNPD--SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             ESSSCEEEEESSCGG--GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             ecccceeEEECCCCc--EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            999999999999887  56677889999999999999865699999999999999999877653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.2e-36  Score=290.08  Aligned_cols=251  Identities=18%  Similarity=0.228  Sum_probs=203.2

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ++..|.+++|+|++ .|++|+.++   .++||.++.....  ...............|++|       +|+|++||+|+.
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg---~v~lWd~~~~~~~--~~~~~~~~~H~~~V~~v~~-------spdg~~l~sgs~  147 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSG---AVELWELDENETL--IVSKFCKYEHDDIVSTVSV-------LSSGTQAVSGSK  147 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTS---EEEEEEECTTSSC--EEEEEEEECCSSCEEEEEE-------CTTSSEEEEEET
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCC---EEEEEeccCCCce--eEeeccccCCCCCEEEEEE-------CCCCCEEEEEeC
Confidence            44679999999986 566777776   6788877665431  1111100011223367777       799999999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      |++|+|||+.++.                           ....+.+|...|++++|++++..+|++|+.|++|++||++
T Consensus       148 d~~i~iwd~~~~~---------------------------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~  200 (344)
T 4gqb_B          148 DICIKVWDLAQQV---------------------------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR  200 (344)
T ss_dssp             TSCEEEEETTTTE---------------------------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCeEEEEECCCCc---------------------------EEEEEcCcCCceEEEEecCCCCCceeeecccccccccccc
Confidence            9999999997532                           2334568999999999999977899999999999999999


Q ss_pred             CCeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          298 AGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       298 ~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      ++++...+.  .|...+++++|+|.+.++|++|+.||+|++||+++.+....+..|...|++++|+|++..+|++|+.||
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence            999888774  456689999999988789999999999999999999888877889999999999999877899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +|++||++++          .+..+.+|...|++++|+|++..+|++|+.|++|++|++.+..
T Consensus       281 ~i~vwd~~~~----------~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          281 SLAVLDSSLS----------ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CEEEECTTCC----------EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEECCCC----------cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            9999999875          3456789999999999999987789999999999999998753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-35  Score=281.96  Aligned_cols=249  Identities=23%  Similarity=0.333  Sum_probs=203.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|+|++||+|+.|+.|+||++....                         ......+.+|..+|++++
T Consensus        13 ~~~~~-------s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~~~V~~v~   60 (297)
T 2pm7_B           13 HDAVM-------DYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRVD   60 (297)
T ss_dssp             EEEEE-------CTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEccccCCeEEEE
Confidence            56666       8999999999999999999986321                         122335568999999999


Q ss_pred             eccC-CCcEEEEEecCCcEEEEeCCCCe--eeEeeccCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCC--cc
Q 010748          274 WNKE-FRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH--SG  346 (502)
Q Consensus       274 ~~~~-~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~--~~  346 (502)
                      |++. .+.+|++|+.|++|+|||+.+++  .+..+.+|...|.+++|+|+  + .+|++++.|++|++||++....  ..
T Consensus        61 ~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           61 WAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             ECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             ecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeee
Confidence            9863 25699999999999999998874  56677889999999999997  5 7999999999999999987642  23


Q ss_pred             ceEeecCCeeEEEeCCCC------------CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748          347 FKWAVAADVESLAWDPHA------------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~------------~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      ....|...|.+++|+|+.            ..+|++|+.|+.|++||+++....     ......+.+|...|.+++|+|
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-----~~~~~~l~~H~~~V~~v~~sp  214 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSP  214 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECC
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-----EEEEEEecCCCCceEEEEECC
Confidence            345678899999999963            358999999999999999875210     124567889999999999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEECCCCCe-eEEEEe--cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          415 LV--PNLLATGSTDKMVKLWDLSNNQP-SCIASR--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       415 ~~--~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~--~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ++  +.+|++++.|++|+|||+..... .....+  ..|...|.+++|+|++++ ||+++.||.|+||+...
T Consensus       215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEETTSCEEEEEECT
T ss_pred             CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE-EEEEcCCCcEEEEEECC
Confidence            84  47999999999999999987431 112222  567889999999999995 99999999999999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4e-36  Score=300.21  Aligned_cols=286  Identities=16%  Similarity=0.171  Sum_probs=222.0

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+.+++|+|++++|++|+.++   .+.+|.+.....  ......|     . ..++.+      +++++++||+|+.+|
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~---~v~i~d~~~~~~--~~~~~~~-----~-~~~~~~------~~~~~~~l~~~~~dg  119 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDG---HDFLFNTIIRDG--SKMLKRA-----D-YTAVDT------AKLQMRRFILGTTEG  119 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETT---EEEEEECCSEET--TTTSCSC-----C-EEEEEE------ECSSSCEEEEEETTS
T ss_pred             ccccceeeeecCCeEEEEEcCC---cEEEEEecccce--eeEEecC-----C-ceEEEE------EecCCCEEEEEECCC
Confidence            4467899999999999999987   445554443322  1111112     1 122222      278999999999999


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|+|||+....                           ....+.+|...|++++|+|+ +.+|++|+.|++|++||+.++
T Consensus       120 ~i~iwd~~~~~---------------------------~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~  171 (420)
T 3vl1_A          120 DIKVLDSNFNL---------------------------QREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDG  171 (420)
T ss_dssp             CEEEECTTSCE---------------------------EEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTC
T ss_pred             CEEEEeCCCcc---------------------------eeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCC
Confidence            99999987422                           22244589999999999999 569999999999999999999


Q ss_pred             eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---ec---------------------CCe
Q 010748          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VA---------------------ADV  355 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~---------------------~~v  355 (502)
                      +++..+.+|...|++++|+|++ .+|++++.||+|++||+++++.......   +.                     ..+
T Consensus       172 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          172 SNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             cCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            9999999999999999999998 8999999999999999998765543322   22                     445


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      .+++|+|++. ++++|+.+|.|++||+++.         ..+..+ ..|...|++++|+|++..+|++|+.||.|++||+
T Consensus       251 ~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          251 NNLEFGTYGK-YVIAGHVSGVITVHNVFSK---------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             CTTCSSCTTE-EEEEEETTSCEEEEETTTC---------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             cceEEcCCCC-EEEEEcCCCeEEEEECCCC---------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence            5556678654 8999999999999999987         344444 5688999999999998449999999999999999


Q ss_pred             CCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          435 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       435 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      ++++.........|...|.++.|. ++. +|++++.||.|++|++....
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          321 RSPECPVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             TCTTSCSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCTT
T ss_pred             CCCcCchhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCCC
Confidence            987532222223367788888665 666 59999999999999998743

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.8e-35  Score=287.55  Aligned_cols=252  Identities=21%  Similarity=0.313  Sum_probs=216.4

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||+|+|||..+...                           ...+..|...|.+++
T Consensus        68 ~~~~~-------s~d~~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~~~~v~~~~  113 (354)
T 2pbi_B           68 LCMDW-------CKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------EHAVTMPCTWVMACA  113 (354)
T ss_dssp             EEEEE-------CTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECSSSCCCEEE
T ss_pred             EEEEE-------CCCCCEEEEEeCCCeEEEEECCCCCc---------------------------ceEEecCCCCEEEEE
Confidence            68887       78999999999999999999865322                           122345788999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCC------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      |+|+ +.+|++|+.|+.+++|++...      .....+.+|...|.++.|+|++ ..|++++.|++|++||+++++....
T Consensus       114 ~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~  191 (354)
T 2pbi_B          114 YAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQS  191 (354)
T ss_dssp             ECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEE
Confidence            9999 569999999999999998643      3456677899999999999998 8999999999999999999887776


Q ss_pred             eEeecCCeeEEEeCCCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC
Q 010748          348 KWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~-~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ...|...|.+++|+|.. ..+|++|+.||.|++||++++         .++..+..|...|++++|+|++ .+|++|+.|
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D  261 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---------QCVQAFETHESDVNSVRYYPSG-DAFASGSDD  261 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCeEEEEEeCCC-CEEEEEeCC
Confidence            77889999999998853 358999999999999999986         6788889999999999999998 899999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ++|++||++..+.........+...+.+++|+|++. +|++|+.|+.|+|||+.++..+....+|.
T Consensus       262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~  326 (354)
T 2pbi_B          262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHE  326 (354)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred             CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCC
Confidence            999999999887544444444556799999999999 59999999999999999998877665554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-36  Score=297.33  Aligned_cols=289  Identities=16%  Similarity=0.281  Sum_probs=236.6

Q ss_pred             CccccccccccCCCc-eEEEEEecCCcceeEEEEE----ecCCCC----CCCeeeeeccc-------cCCCcceeeeecC
Q 010748          138 DSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYIL----EESDGG----DPNLYVHHHII-------IPAFPLCMAWLDC  201 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~----~~~~~~----~~~l~~~~~~~-------~~~~~~~~~~~~~  201 (502)
                      |...|.+++|+|+++ +|++|+.++   .+.||.+    ......    ......+ ...       ......|++|   
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~---  116 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNS---VARLARIVETDQEGKKYWKLTIIAELRH-PFALSASSGKTTNQVTCLAW---  116 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBT---EEEEEEEEEC------CEEEEEEEEEEC-CCCCC------CBCEEEEEE---
T ss_pred             ccCceEEEEECCCCCcEEEEecCCc---eEEEEEEecccCCccccccccccccccc-cccccccccCCCCceEEEEE---
Confidence            557899999999999 999999876   6677777    433200    0011111 000       1223467777   


Q ss_pred             CCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748          202 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       202 ~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                          +|++++|++|+.+|.|++|+..                            ......+.+|...|.+++|+|+ +.+
T Consensus       117 ----s~~~~~l~~~~~dg~i~i~~~~----------------------------~~~~~~~~~~~~~v~~~~~~~~-~~~  163 (425)
T 1r5m_A          117 ----SHDGNSIVTGVENGELRLWNKT----------------------------GALLNVLNFHRAPIVSVKWNKD-GTH  163 (425)
T ss_dssp             ----CTTSSEEEEEETTSCEEEEETT----------------------------SCEEEEECCCCSCEEEEEECTT-SSE
T ss_pred             ----cCCCCEEEEEeCCCeEEEEeCC----------------------------CCeeeeccCCCccEEEEEECCC-CCE
Confidence                7899999999999999999943                            1222344579999999999999 569


Q ss_pred             EEEEecCCcEEEEeCCCCeeeEeeccCCCC---------------eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          282 LASASADKQVKIWDVAAGKCNLTLEHHTDK---------------VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       282 l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~---------------v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      |++++.|+.|++||+.+++.+..+..+...               +.++.|+|++  .+++++.+|.|++||+++.....
T Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~  241 (425)
T 1r5m_A          164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTG  241 (425)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSE
T ss_pred             EEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceee
Confidence            999999999999999999999999888777               9999999976  68999999999999999987776


Q ss_pred             ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC
Q 010748          347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ....+...|.+++|+|++. ++++++.+|.|++||+++.         ..+..+..|...|.+++|+|++  +|++++.|
T Consensus       242 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d  309 (425)
T 1r5m_A          242 KLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVSASWVGDD--KVISCSMD  309 (425)
T ss_dssp             EECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEEEEEETTT--EEEEEETT
T ss_pred             eeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEEEEECCCC--EEEEEeCC
Confidence            6667889999999999865 8999999999999999986         6778888899999999999976  99999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +.|++||+.+++  .+..+..|...|.+++|+|++. +|++++.+|.|++|++.++.
T Consensus       310 ~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          310 GSVRLWSLKQNT--LLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             SEEEEEETTTTE--EEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHH
T ss_pred             CcEEEEECCCCc--EeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Confidence            999999999887  5666778889999999999999 58999999999999998877

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.8e-36  Score=295.33  Aligned_cols=293  Identities=14%  Similarity=0.183  Sum_probs=232.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC----CCCeeeeeccccCCCcceeeeecCCCCCCCC---
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG----DPNLYVHHHIIIPAFPLCMAWLDCPLKDREK---  208 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~---  208 (502)
                      ..|...|.+++|+|  ++|++|+.++   .+.||.+......    ....+..|    .....|+.|       +|+   
T Consensus        13 ~~h~~~i~~~~~~~--~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~   76 (397)
T 1sq9_A           13 KAHDADIFSVSACN--SFTVSCSGDG---YLKVWDNKLLDNENPKDKSYSHFVH----KSGLHHVDV-------LQAIER   76 (397)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTS---EEEEEESBCCTTCCGGGGEEEEECC----TTCEEEEEE-------EEEEET
T ss_pred             hhhhcCeEEEEecC--CeEEEEcCCC---EEEEEECCCcccccCCCcceEEecC----CCcEEEEEE-------eccccc
Confidence            35889999999999  8999998887   5566665544310    00111222    223467777       567   


Q ss_pred             -C---CEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc-----ccceeeEEec----
Q 010748          209 -G---NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-----TDSVLGLAWN----  275 (502)
Q Consensus       209 -~---~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~~----  275 (502)
                       +   ++|++|+.||.|++|++.......                      ......+..|     ...|.+++|+    
T Consensus        77 ~g~~~~~l~s~~~dg~i~iw~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           77 DAFELCLVATTSFSGDLLFYRITREDETK----------------------KVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             TTEEEEEEEEEETTSCEEEEEEEECTTTC----------------------CEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             CCccccEEEEEcCCCCEEEEEccCCcccc----------------------cccceeecccccccCCCcEEEEEEeeccC
Confidence             8   999999999999999997543210                      1112234456     5899999999    


Q ss_pred             cCCCcE-EEEEecCCcEEEEeCCC------CeeeE-----ee-------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          276 KEFRNI-LASASADKQVKIWDVAA------GKCNL-----TL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       276 ~~~~~~-l~sgs~dg~v~vwd~~~------~~~~~-----~~-------~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~i  336 (502)
                      |+ +.+ |++|+.||.|++||+.+      ++.+.     .+       ..|...|.+++|+|++  +|++++.||.|++
T Consensus       135 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i  211 (397)
T 1sq9_A          135 RL-LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQI  211 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEE
T ss_pred             CC-CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEE
Confidence            88 457 99999999999999998      66666     66       4489999999999988  8999999999999


Q ss_pred             EecCCCCCccceEe---e---cCCeeEEEeCCCCCCEEEEEeCC---CcEEEEECCCCCCCCCCCCCccceEEec-----
Q 010748          337 KDARISTHSGFKWA---V---AADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHA-----  402 (502)
Q Consensus       337 wd~~~~~~~~~~~~---~---~~~v~~v~~~~~~~~~~~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~-----  402 (502)
                      ||+++.+.......   |   ...|.+++|+|++. ++++++.+   |.|++||+++.         .++..+..     
T Consensus       212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~  281 (397)
T 1sq9_A          212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFG---------ERIGSLSVPTHSS  281 (397)
T ss_dssp             EETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTC---------CEEEEECBC----
T ss_pred             EECCCCceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCC---------cccceeccCcccc
Confidence            99998776665555   6   88999999999865 89999999   99999999986         67778887     


Q ss_pred             --------cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec------CC---------------CCcEE
Q 010748          403 --------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN------PK---------------AGAVF  453 (502)
Q Consensus       403 --------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~------~~---------------~~~v~  453 (502)
                              |...|.+++|+|++ .+|++++.||.|++||+.+++  .+..+.      .|               ...|+
T Consensus       282 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~  358 (397)
T 1sq9_A          282 QASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF  358 (397)
T ss_dssp             ----CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE--EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE
T ss_pred             cccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCc--eeEEEecccCcccchhhhhccccccccccCCcee
Confidence                    99999999999998 899999999999999999887  455555      66               89999


Q ss_pred             EEEEcCCC----------CcEEEEEeCCCcEEEEECCCCc
Q 010748          454 SVAFSEDS----------PFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       454 ~~~~spd~----------~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +++|+|++          . +|++|+.||.|++|++.+++
T Consensus       359 ~~~~~~~g~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          359 DVKFLKKGWRSGMGADLNE-SLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EEEEECTTTSBSTTCTTSC-EEEEEETTTEEEEEEEEC--
T ss_pred             EEEeccccccccccccccc-eEEEecCCCcEEEEEcCCCC
Confidence            99999998          5 69999999999999998763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.4e-35  Score=291.13  Aligned_cols=290  Identities=13%  Similarity=0.147  Sum_probs=219.5

Q ss_pred             CCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC-CCCEEE
Q 010748          136 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~la  213 (502)
                      ..|...|.+++|+|++ ++|++|+.++   .+.||.+.....  ...+.  .........+++|       +| ++++|+
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~--~~~~~--~~~h~~~v~~~~~-------~~~~~~~l~  135 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGG---DIILWDYDVQNK--TSFIQ--GMGPGDAITGMKF-------NQFNTNQLF  135 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTS---CEEEEETTSTTC--EEEEC--CCSTTCBEEEEEE-------ETTEEEEEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCC---eEEEEeCCCccc--ceeee--cCCcCCceeEEEe-------CCCCCCEEE
Confidence            3478899999999999 9999999887   456666554332  11111  0011233367777       57 689999


Q ss_pred             EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      +|+.|+.|++||+.. ...                        ........|...|.+++|+|+ +.+|++|+.|+.|++
T Consensus       136 s~~~d~~i~iwd~~~-~~~------------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i  189 (383)
T 3ei3_B          136 VSSIRGATTLRDFSG-SVI------------------------QVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLL  189 (383)
T ss_dssp             EEETTTEEEEEETTS-CEE------------------------EEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEE
T ss_pred             EEeCCCEEEEEECCC-Cce------------------------EEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEE
Confidence            999999999999973 111                        111122346688999999999 569999999999999


Q ss_pred             EeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---ccceEeecCCeeEEEeCC-CCCCEEE
Q 010748          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDP-HAEHSFV  369 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~v~~~~-~~~~~~~  369 (502)
                      ||+ +++++..+..|...|.+++|+|++..+|++++.|+.|++||+++...   ......+...|.+++|+| ++. +++
T Consensus       190 ~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~  267 (383)
T 3ei3_B          190 LGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDST-KLL  267 (383)
T ss_dssp             EET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSC-EEE
T ss_pred             EEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCC-EEE
Confidence            999 57888999999999999999999944999999999999999998432   222347889999999999 654 899


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-----------------CCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-----------------KAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-----------------~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      +++.||.|++||+++..         ....+..|.                 ..+..++|+|++ .+  +|+.|+.|++|
T Consensus       268 ~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iw  335 (383)
T 3ei3_B          268 TTDQRNEIRVYSSYDWS---------KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIY  335 (383)
T ss_dssp             EEESSSEEEEEETTBTT---------SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEE
T ss_pred             EEcCCCcEEEEECCCCc---------cccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEE
Confidence            99999999999999863         333333332                 334456666665 33  77789999999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      |+.+++.........|.+.+.+++|+|+++ +|++|+ ||.|+|||+.+
T Consensus       336 d~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          336 DANSGGLVHQLRDPNAAGIISLNKFSPTGD-VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ETTTCCEEEEECBTTBCSCCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred             ecCCCceeeeecCCCCCceEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence            999988433333333567788889999999 488886 89999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.3e-35  Score=303.89  Aligned_cols=291  Identities=23%  Similarity=0.346  Sum_probs=237.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++.|+|++++|++++.++   .+++|.  ........+..|.     ....++++       +|++++|+++
T Consensus       259 ~~~~~~v~~v~~~~d~~~l~~~~~d~---~i~~w~--~~~~~~~~~~~h~-----~~v~~~~~-------~~~~~~l~t~  321 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPDGQTIASASDDK---TVKLWN--RNGQLLQTLTGHS-----SSVWGVAF-------SPDGQTIASA  321 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEE--TTSCEEEEECCCS-----SCEEEEEE-------CTTSSEEEEE
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCC---EEEEEe--CCCcEEEEEecCC-----CCeEEEEE-------CCCCCEEEEE
Confidence            34778899999999999999999887   445554  3322001111222     22245555       7999999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|+.|++|++...                            ....+.+|...|.+++|+|+ +.+|++|+.|+.|++|+
T Consensus       322 ~~d~~i~~w~~~~~----------------------------~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          322 SDDKTVKLWNRNGQ----------------------------HLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN  372 (577)
T ss_dssp             ETTSCEEEEETTSC----------------------------EEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEE
T ss_pred             eCCCeEEEEeCCCC----------------------------eeEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEc
Confidence            99999999998631                            11234578999999999999 56999999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      . +++.+..+.+|...|++++|+|++ ++|++++.|+.|++||.. .+.......|...|.+++|+|++. ++++++.|+
T Consensus       373 ~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~  448 (577)
T 2ymu_A          373 R-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDK  448 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCC-EEEEEcCCC
Confidence            5 678888999999999999999999 899999999999999964 344444667889999999999865 899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|++||...          ..+..+.+|...|++++|+|++ .+|++++.|+.|++||.. ++  ++..+.+|...|+++
T Consensus       449 ~v~~w~~~~----------~~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~--~~~~~~~h~~~v~~l  514 (577)
T 2ymu_A          449 TVKLWNRNG----------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGV  514 (577)
T ss_dssp             EEEEEETTS----------CEEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT-SC--EEEEEECCSSCEEEE
T ss_pred             EEEEEECCC----------CEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CC--EEEEEeCCCCCEEEE
Confidence            999999642          5678889999999999999998 999999999999999964 44  567788999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       456 ~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +|+|++++ |++++.||.|+|||. +++.+....+|.
T Consensus       515 ~~s~dg~~-l~s~~~dg~v~lwd~-~~~~~~~~~~h~  549 (577)
T 2ymu_A          515 AFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHS  549 (577)
T ss_dssp             EECTTSSC-EEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred             EEcCCCCE-EEEEECcCEEEEEeC-CCCEEEEEcCCC
Confidence            99999995 899999999999996 567766655543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.4e-36  Score=293.38  Aligned_cols=294  Identities=14%  Similarity=0.139  Sum_probs=230.5

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      |...|.+++|+|++++|++|+.++   .+.||............+..|    .....+++|       +|++++|++|+.
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~~~~~   72 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNH---EVHIYEKSGNKWVQVHELKEH----NGQVTGVDW-------APDSNRIVTCGT   72 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSS---EEEEEEEETTEEEEEEEEECC----SSCEEEEEE-------ETTTTEEEEEET
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCC---EEEEEeCCCCcEEeeeeecCC----CCcccEEEE-------eCCCCEEEEEcC
Confidence            678899999999999999998776   566666654420001112222    233467777       689999999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      ||.|++|++.....                         .....+..|...|.+++|+|+ +.+|++|+.|+.|++||+.
T Consensus        73 dg~i~vwd~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~  126 (372)
T 1k8k_C           73 DRNAYVWTLKGRTW-------------------------KPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFE  126 (372)
T ss_dssp             TSCEEEEEEETTEE-------------------------EEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEE
T ss_pred             CCeEEEEECCCCee-------------------------eeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEec
Confidence            99999999864321                         111223468899999999999 5699999999999999998


Q ss_pred             CCee---e-EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC------------------CCCCccceEeecCCe
Q 010748          298 AGKC---N-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR------------------ISTHSGFKWAVAADV  355 (502)
Q Consensus       298 ~~~~---~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~v  355 (502)
                      .++.   . .....|...|.+++|+|++ .+|++++.||.|++||++                  ..........+...+
T Consensus       127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (372)
T 1k8k_C          127 QENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV  205 (372)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred             CCCcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence            8762   3 3336789999999999998 899999999999999975                  233333333677889


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      .+++|+|++. ++++++.||.|++||+++.         .++..+..|..+|.+++|+|++ .+|++| .|+.|++|++.
T Consensus       206 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~  273 (372)
T 1k8k_C          206 HGVCFSANGS-RVAWVSHDSTVCLADADKK---------MAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYD  273 (372)
T ss_dssp             EEEEECSSSS-EEEEEETTTEEEEEEGGGT---------TEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEE
T ss_pred             EEEEECCCCC-EEEEEeCCCEEEEEECCCC---------ceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEcc
Confidence            9999999865 8999999999999999986         7788889999999999999987 777776 89999999998


Q ss_pred             C--CCeeEE------------------------------------EEe-cCCCCcEEEEEEc-CCC---CcEEEEEeCCC
Q 010748          436 N--NQPSCI------------------------------------ASR-NPKAGAVFSVAFS-EDS---PFVLAIGGSKG  472 (502)
Q Consensus       436 ~--~~~~~~------------------------------------~~~-~~~~~~v~~~~~s-pd~---~~ll~sg~~dg  472 (502)
                      .  +...++                                    ..+ .+|..+|++++|+ +++   . +|++|+.||
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg  352 (372)
T 1k8k_C          274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDG  352 (372)
T ss_dssp             TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTS
T ss_pred             CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEecCCC
Confidence            7  321110                                    222 4899999999976 555   6 699999999


Q ss_pred             cEEEEECCCCccc
Q 010748          473 KLEIWDTLSDAGI  485 (502)
Q Consensus       473 ~i~vwd~~~~~~~  485 (502)
                      .|++|++.+++.+
T Consensus       353 ~i~~W~~~~~~~~  365 (372)
T 1k8k_C          353 GMSIWDVRSLESA  365 (372)
T ss_dssp             EEEEEEHHHHHHH
T ss_pred             ceEEEEecChhHh
Confidence            9999999886654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.6e-34  Score=279.82  Aligned_cols=292  Identities=18%  Similarity=0.296  Sum_probs=229.7

Q ss_pred             CCCccccccccccCC-CceEEEEEecCCcceeEEEEEecCCCCCCC---eeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          136 DEDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPN---LYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      ..|.+.|.+++|+|+ +++|++|+.|+   .++||.+.........   .+..|    .....++.|       +|++++
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~---~i~vWd~~~~~~~~~~~~~~l~~h----~~~V~~~~~-------s~dg~~  100 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDK---TIIMWKLTRDETNYGIPQRALRGH----SHFVSDVVI-------SSDGQF  100 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTS---CEEEEEECCSSSCSEEEEEEECCC----SSCEEEEEE-------CTTSSE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCC---eEEEEECCCCCcccceeeEEEeCC----CCCEEEEEE-------CCCCCE
Confidence            459999999999998 68999999886   6788888765431100   01112    233467777       799999


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      |++|+.|+.|++|+......                           ......+...+..+.+++. +.+|++|+.|+.+
T Consensus       101 l~s~~~d~~i~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~  152 (340)
T 4aow_A          101 ALSGSWDGTLRLWDLTTGTT---------------------------TRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTI  152 (340)
T ss_dssp             EEEEETTSEEEEEETTTTEE---------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSCE
T ss_pred             EEEEcccccceEEeecccce---------------------------eeeecCCCCceeEEEEeec-CccceeecCCCeE
Confidence            99999999999999874321                           2223356778889999998 5689999999999


Q ss_pred             EEEeCCCCee-eEeeccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEE
Q 010748          292 KIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       292 ~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~  369 (502)
                      ++||+..... ...+.+|...+.+++|++.+. .++++++.|+.|++||+++.........|...|.+++|+|++. +|+
T Consensus       153 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~  231 (340)
T 4aow_A          153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCA  231 (340)
T ss_dssp             EEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred             EEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEE
Confidence            9999976644 445578999999999998753 4678999999999999999887776778899999999999865 899


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE-------E
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-------I  442 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~-------~  442 (502)
                      +|+.||.|++||+++.         .++..+. +...|.++.|+|++  .+++++.|+.|++||+++.....       .
T Consensus       232 s~s~Dg~i~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  299 (340)
T 4aow_A          232 SGGKDGQAMLWDLNEG---------KHLYTLD-GGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVIS  299 (340)
T ss_dssp             EEETTCEEEEEETTTT---------EEEEEEE-CSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC---
T ss_pred             EEeCCCeEEEEEeccC---------ceeeeec-CCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEecccccee
Confidence            9999999999999986         5566665 45689999999975  45566779999999998765321       1


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .....|...|++++|+|++++ |++|+.||.|+|||+.+|.
T Consensus       300 ~~~~~h~~~v~~l~~s~dg~~-l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          300 TSSKAEPPQCTSLAWSADGQT-LFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ----CCCCCEEEEEECTTSSE-EEEEETTSCEEEEEEEC--
T ss_pred             eeccCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEeCCCcC
Confidence            223468889999999999994 8999999999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.3e-35  Score=280.77  Aligned_cols=292  Identities=13%  Similarity=0.150  Sum_probs=234.5

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +...|.+++|+|+|++++++...+..   .+|  ....    ...............+++|       +|++++|++++ 
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~---~~~--~~~~----~~~~~~~~~h~~~v~~~~~-------~~~~~~l~~~~-   70 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDAL---IGP--GIPR----HARQINTLNHGEVVCAVTI-------SNPTRHVYTGG-   70 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSS---SST--TCCS----EEEEEEEECCSSCCCEEEE-------CSSSSEEEEEC-
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcE---ecc--ccCC----ccccceeccCCCceEEEEE-------ecCCcEEEEcC-
Confidence            45679999999999999988766521   111  1111    1111111112334467777       78999999999 


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      +|.|++|++.......+..                      .....+|...|.+++|+|+ +.+|++|+.||.|++||+.
T Consensus        71 dg~i~iw~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~  127 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVS----------------------QLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSE----------------------EEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECC
T ss_pred             CCeEEEEECCCCCceeeee----------------------cccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECC
Confidence            9999999998644332211                      1122368899999999998 5699999999999999999


Q ss_pred             CCe--eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          298 AGK--CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       298 ~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      +++  ....+..|...|.+++|+|++ .+|++++.+|.|++||+++.+.......+...+.+++|+|++. ++++++.+|
T Consensus       128 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg  205 (337)
T 1gxr_A          128 APTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDN  205 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC-EEEEEecCC
Confidence            887  667788899999999999998 8999999999999999998876665566888999999999765 899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|++||+++.         ..+..+ .|...+.+++|+|++ .+|++++.++.|++||+.+.+   ......|...|.++
T Consensus       206 ~i~~~d~~~~---------~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~  271 (337)
T 1gxr_A          206 TVRSWDLREG---------RQLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSL  271 (337)
T ss_dssp             EEEEEETTTT---------EEEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEE
T ss_pred             cEEEEECCCC---------ceEeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEE
Confidence            9999999976         444444 478899999999998 899999999999999999886   34667889999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       456 ~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      +|+|+++ +|++++.+|.|++|++.+++.+.
T Consensus       272 ~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          272 KFAYCGK-WFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             EECTTSS-EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EECCCCC-EEEEecCCCcEEEEECCCCeEEE
Confidence            9999999 58999999999999999988764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.3e-34  Score=288.77  Aligned_cols=263  Identities=19%  Similarity=0.334  Sum_probs=218.1

Q ss_pred             ccCCCcceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc
Q 010748          188 IIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT  266 (502)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~  266 (502)
                      .....+.+++|       +|+ +++||+|+.+|.|+||++........                 ..........+.+|.
T Consensus       126 ~h~~~v~~l~~-------~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~~~~~~~~~~~h~  181 (430)
T 2xyi_A          126 NHEGEVNRARY-------MPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSGECQPDLRLRGHQ  181 (430)
T ss_dssp             EESSCCSEEEE-------ETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTCCCCCSEEEECCS
T ss_pred             cCCCcEEEEEE-------CCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccccCCCcEEecCCC
Confidence            33455678887       565 78999999999999999964211100                 001123344556899


Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee-------eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~  339 (502)
                      ..|++|+|+|++..+|++|+.||+|++|++.++..       ...+.+|...|.+++|+|.+..+|++++.||.|++||+
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~  261 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT  261 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            99999999999666999999999999999987422       45677899999999999966699999999999999999


Q ss_pred             CCCC---CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          340 RIST---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       340 ~~~~---~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      ++..   .......+...|++++|+|++..++++|+.+|.|++||+++.        ..++..+..|...|++++|+|++
T Consensus       262 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~--------~~~~~~~~~h~~~v~~i~~sp~~  333 (430)
T 2xyi_A          262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------KLKLHSFESHKDEIFQVQWSPHN  333 (430)
T ss_dssp             TCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT--------TSCSEEEECCSSCEEEEEECSSC
T ss_pred             CCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC--------CCCeEEeecCCCCEEEEEECCCC
Confidence            9873   344445788899999999998888999999999999999986        36788899999999999999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCC------------eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          417 PNLLATGSTDKMVKLWDLSNNQ------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~------------~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      +.+|++++.|+.|+|||+....            +..+..+.+|...|++++|+|+++++|++++.||.|+||++...
T Consensus       334 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            7789999999999999998722            24677888999999999999999988999999999999999754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-35  Score=301.61  Aligned_cols=311  Identities=11%  Similarity=0.080  Sum_probs=226.5

Q ss_pred             CccccccccccCCC---------ceEEEEEecC----------------CcceeEEEEEecCCCCCC--CeeeeeccccC
Q 010748          138 DSEDLEDMTINPND---------AVIVCARNED----------------DVSHLEVYILEESDGGDP--NLYVHHHIIIP  190 (502)
Q Consensus       138 ~~~~v~~~~~~p~~---------~~l~~~~~~~----------------~~~~l~v~~~~~~~~~~~--~l~~~~~~~~~  190 (502)
                      ....|.+|.|+|++         ++||+|+..+                ..+.++||.++.......  ....||..   
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~---  208 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG---  208 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCC---
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC---
Confidence            35689999999987         7888877442                124688998876542000  01233322   


Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccccee
Q 010748          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  270 (502)
Q Consensus       191 ~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  270 (502)
                       ...+++|.+. ..+++++.+||+|+.||+|+|||+...........                ........+.+|...|+
T Consensus       209 -~V~~v~wsp~-~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~----------------~~~~p~~~l~~h~~~v~  270 (524)
T 2j04_B          209 -EVWDLKWHEG-CHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK----------------MCEKPSLTLSLADSLIT  270 (524)
T ss_dssp             -SEEEEEECSS-CCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE----------------CCCSCSEEECCTTTCEE
T ss_pred             -cEEEEEECCC-CCCCCCCceEEEEecCCeEEEEEcCCCccccccce----------------eecCceEEEEcCCCCEE
Confidence             2367788532 01223478999999999999999975432210000                00112234568999999


Q ss_pred             eEEeccCCCcEEEEEecCCcEEEEeCCCCe-eeEeeccCCCCeEEE--EEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          271 GLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLEHHTDKVQAV--AWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-~~~~~~~h~~~v~~l--~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      +++|+++ . .|++|+.||+|++||+.++. +...+.+|...|++|  .|+|++.++|++|+.|++|+|||+++.+....
T Consensus       271 sv~~s~~-~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~  348 (524)
T 2j04_B          271 TFDFLSP-T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT  348 (524)
T ss_dssp             EEEESSS-S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred             EEEecCC-C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence            9999986 3 89999999999999999774 456688999999999  46666547899999999999999998776554


Q ss_pred             eEeecC--CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          348 KWAVAA--DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       348 ~~~~~~--~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...+..  .|.+++|+|++. .+++++.|++|++||+++.         ..+..+.+|...|++++|+|++ .+|++|+.
T Consensus       349 ~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~---------~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~  417 (524)
T 2j04_B          349 TVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAA---------FAVHPLVSRETTITAIGVSRLH-PMVLAGSA  417 (524)
T ss_dssp             EEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCT---------TCCEEEEECSSCEEEEECCSSC-CBCEEEET
T ss_pred             cccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccc---------ccceeeecCCCceEEEEeCCCC-CeEEEEEC
Confidence            445543  588999999866 6899999999999999986         5667788999999999999998 88999999


Q ss_pred             CCcEEEEECCCCC------------------------------------------eeEEEEecCCCCcEEEEEEcCCCC-
Q 010748          426 DKMVKLWDLSNNQ------------------------------------------PSCIASRNPKAGAVFSVAFSEDSP-  462 (502)
Q Consensus       426 dg~i~vwd~~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~spd~~-  462 (502)
                      ||+|++||+....                                          ..++..+.+|.+.|++++|+|+++ 
T Consensus       418 Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~  497 (524)
T 2j04_B          418 DGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAG  497 (524)
T ss_dssp             TTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTT
T ss_pred             CCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCc
Confidence            9999999853210                                          011233456788999999999963 


Q ss_pred             -cEEEEEeCCCcEEEEECCCC
Q 010748          463 -FVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       463 -~ll~sg~~dg~i~vwd~~~~  482 (502)
                       .+||+|+.+|.|+||++...
T Consensus       498 ~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          498 GKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             TTEEEEECTTSEEEEEECSCC
T ss_pred             cHHHHhhccCceEEEEEcccc
Confidence             36999999999999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=284.08  Aligned_cols=290  Identities=13%  Similarity=0.168  Sum_probs=234.3

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++|++|+.++   .+.||.+....  ....+..|.    ....+++|       +|++++|++++
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~--~~~~~~~h~----~~v~~~~~-------~~~~~~l~s~~   93 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDS---SASVWYSLNGE--RLGTLDGHT----GTIWSIDV-------DCFTKYCVTGS   93 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSS---CEEEEETTTCC--EEEEECCCS----SCEEEEEE-------CTTSSEEEEEE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCC---EEEEEeCCCch--hhhhhhhcC----CcEEEEEE-------cCCCCEEEEEe
Confidence            4788999999999999999999887   44555543322  111222232    23367777       78999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC-----CcE
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD-----KQV  291 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d-----g~v  291 (502)
                      .||.|++||+.+.....                           .+ .|...|.+++|+|+ +.+|++++.+     +.|
T Consensus        94 ~dg~i~iwd~~~~~~~~---------------------------~~-~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVA---------------------------TW-KSPVPVKRVEFSPC-GNYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             TTTEEEEEETTTCCEEE---------------------------EE-ECSSCEEEEEECTT-SSEEEEEECCBTTBCCEE
T ss_pred             CCCeEEEEECCCCcEEE---------------------------Ee-ecCCCeEEEEEccC-CCEEEEecCCccCCCCEE
Confidence            99999999997543221                           11 27788999999999 5689999998     999


Q ss_pred             EEEeCCCCe-----------eeEeeccCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCccceEeecCCeeE
Q 010748          292 KIWDVAAGK-----------CNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAVAADVES  357 (502)
Q Consensus       292 ~vwd~~~~~-----------~~~~~~~h~~--~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~  357 (502)
                      ++||+..+.           .+..+..|..  .+.+++|+|++ .+|++++.+|.|++||+++ .........+...|.+
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD  223 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence            999997653           3344555666  99999999998 8999999999999999998 4555555567889999


Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC----------
Q 010748          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----------  427 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----------  427 (502)
                      ++|+|++. ++++++.+|.|++||+++.         ..+..+. +...+.+++|+|++ .++++++.++          
T Consensus       224 ~~~~~~~~-~l~~~~~d~~i~v~d~~~~---------~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~  291 (369)
T 3zwl_B          224 MQFSPDLT-YFITSSRDTNSFLVDVSTL---------QVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSAN  291 (369)
T ss_dssp             EEECTTSS-EEEEEETTSEEEEEETTTC---------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC----------
T ss_pred             EEECCCCC-EEEEecCCceEEEEECCCC---------ceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecC
Confidence            99999765 8999999999999999986         5555555 78899999999998 8999998888          


Q ss_pred             ----cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          428 ----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       428 ----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                          .+++||+.+++  .+..+.+|.+.|.+++|+|+++ +|++++.||.|+||++.++.....
T Consensus       292 ~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          292 EGKFEARFYHKIFEE--EIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             ---CEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECHHHHTCC
T ss_pred             CCcceeEEEecCCCc--chhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECccccchhH
Confidence                89999999987  5667788999999999999999 599999999999999987665433

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.8e-34  Score=284.65  Aligned_cols=270  Identities=20%  Similarity=0.318  Sum_probs=211.5

Q ss_pred             CcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee
Q 010748          192 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       192 ~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      ...|++|       +|+|++||+|+ ++.++||++.++..+..+   ......      ..............+...|++
T Consensus        66 ~V~~v~f-------spdg~~la~g~-~~~v~i~~~~~g~~~~~l---~~~~~~------~~~~~~~~~~~~~~~~~~v~~  128 (393)
T 1erj_A           66 VVCCVKF-------SNDGEYLATGC-NKTTQVYRVSDGSLVARL---SDDSAA------NKDPENLNTSSSPSSDLYIRS  128 (393)
T ss_dssp             CCCEEEE-------CTTSSEEEEEC-BSCEEEEETTTCCEEEEE---CC-----------------------CCCCBEEE
T ss_pred             EEEEEEE-------CCCCCEEEEEc-CCcEEEEEecCCCEEEEe---cCcccc------ccccccccccccCCCceeEEE
Confidence            3467777       89999999987 689999999876543221   110000      000000001111234456999


Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  351 (502)
                      ++|+|+ +.+|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++ .+|++++.|++|++||++++.... ...+
T Consensus       129 v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~-~~~~  205 (393)
T 1erj_A          129 VCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL-TLSI  205 (393)
T ss_dssp             EEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEEC
T ss_pred             EEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEE-EEEc
Confidence            999999 5699999999999999999999999999999999999999999 899999999999999999876544 4456


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-------eccCCCeeEEEEcCCCCCEEEEEe
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ...+.+++|+|....++++|+.||.|++||++++         ..+..+       .+|...|.+++|+|++ .+|++|+
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~---------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s  275 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---------FLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGS  275 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC---------CEEEEEC------CCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC---------cEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEe
Confidence            7889999999955568999999999999999876         334333       5799999999999998 8999999


Q ss_pred             CCCcEEEEECCCCC----------eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          425 TDKMVKLWDLSNNQ----------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       425 ~dg~i~vwd~~~~~----------~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      .|+.|++||+++..          ..+...+.+|...|.+++|+|++.+ |++|+.||.|++||+.++..+...-+|.
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~~~~~~l~~h~  352 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSGNPLLMLQGHR  352 (393)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence            99999999997642          1245667789999999999999994 8999999999999999998876655543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9e-36  Score=294.03  Aligned_cols=250  Identities=22%  Similarity=0.328  Sum_probs=210.5

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||+|+|||+.+..                           ....+..|...|.+++
T Consensus        70 ~~~~~-------sp~~~~l~s~s~D~~v~iWd~~~~~---------------------------~~~~~~~h~~~v~~~~  115 (380)
T 3iz6_a           70 YSLDW-------TPEKNWIVSASQDGRLIVWNALTSQ---------------------------KTHAIKLHCPWVMECA  115 (380)
T ss_dssp             EEEEE-------CTTSSCEEEEETTSEEEEEETTTTE---------------------------EEEEEECCCTTCCCCE
T ss_pred             EEEEE-------cCCCCEEEEEeCCCeEEEEECCCCc---------------------------cceEEecCCCCEEEEE
Confidence            68887       7999999999999999999987532                           2234457999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCe-------eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGK-------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      |+|+ +.+|++|+.|+.|++|++.+..       ....+.+|.+.|.++.|+|.+...|++|+.|++|++||++++....
T Consensus       116 ~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          116 FAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             ECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred             ECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence            9999 5699999999999999987532       3456789999999999999876789999999999999999887654


Q ss_pred             ce-----EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748          347 FK-----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       347 ~~-----~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      ..     ..|...|.+++|++.+..++++|+.||.|++||++..        ...+..+.+|...|++++|+|++ .+|+
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--------~~~~~~~~~h~~~v~~v~~~p~~-~~l~  265 (380)
T 3iz6_a          195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--------SRAVRTYHGHEGDINSVKFFPDG-QRFG  265 (380)
T ss_dssp             EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT--------CCCCEEECCCSSCCCEEEECTTS-SEEE
T ss_pred             EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC--------CcceEEECCcCCCeEEEEEecCC-CeEE
Confidence            33     3577889999998866679999999999999999865        36778899999999999999998 8999


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecC-----CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          422 TGSTDKMVKLWDLSNNQPSCIASRNP-----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~-----~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +|+.||+|++||+++++.........     +...|++++|+|+++ +|++|+.||.|++||+.+++.+...
T Consensus       266 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEE
Confidence            99999999999999987433332211     223489999999999 5889999999999999988876554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-34  Score=275.71  Aligned_cols=287  Identities=18%  Similarity=0.225  Sum_probs=232.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++| |++++|++|+.++   .+.||.+.....  ......|    .....+++|       +|++++|++|
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg---~v~vw~~~~~~~--~~~~~~~----~~~v~~~~~-------~~~~~~l~~~   77 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDG---TVRLWSKDDQWL--GTVVYTG----QGFLNSVCY-------DSEKELLLFG   77 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTS---EEEEEEESSSEE--EEEEEEC----SSCEEEEEE-------ETTTTEEEEE
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCC---cEEEEECCCCEE--EEEeecC----CccEEEEEE-------CCCCCEEEEe
Confidence            358899999999 9999999999887   566666643321  1222223    334467777       6899999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.+|.|++|++......                        .....+.+|...|.+++|+   +.+|++|+.||.|++||
T Consensus        78 ~~dg~i~~~~~~~~~~~------------------------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d  130 (313)
T 3odt_A           78 GKDTMINGVPLFATSGE------------------------DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK  130 (313)
T ss_dssp             ETTSCEEEEETTCCTTS------------------------CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE
T ss_pred             cCCCeEEEEEeeecCCC------------------------CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc
Confidence            99999999999753221                        2223445799999999994   34899999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe-ecCCeeEEEeCCCCCCEEEEEeCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~~d  374 (502)
                        .++.+..+..|...|.++.|+|....+|++++.||.|++||...  ....... +...+.+++|+|++.  +++++.+
T Consensus       131 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~d  204 (313)
T 3odt_A          131 --EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGH--FISCSND  204 (313)
T ss_dssp             --TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEEECSSCSSCEEEEEEEETTE--EEEEETT
T ss_pred             --CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEEEeccCcccEEEEEEcCCCe--EEEccCC
Confidence              77888889999999999999984448999999999999999432  2222223 778899999999764  8999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      |.|++||+++.         .++..+..|...|++++|+|++  .|++++.||.|++||+.+++  .+..+..|...|.+
T Consensus       205 g~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~  271 (313)
T 3odt_A          205 GLIKLVDMHTG---------DVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGS--LKQVITLPAISIWS  271 (313)
T ss_dssp             SEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCC--EEEEEECSSSCEEE
T ss_pred             CeEEEEECCch---------hhhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCc--eeEEEeccCceEEE
Confidence            99999999986         7788889999999999999987  48899999999999999987  56667788889999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       455 ~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ++|+|++.  +++++.||.|++|++.+++.+..
T Consensus       272 ~~~~~~~~--~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          272 VDCMSNGD--IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EEECTTSC--EEEEETTSCEEEEESCGGGCCC-
T ss_pred             EEEccCCC--EEEEeCCCcEEEEeCCCCceeeh
Confidence            99999997  55689999999999998876654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7e-35  Score=283.75  Aligned_cols=247  Identities=23%  Similarity=0.390  Sum_probs=205.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|+|++||+|+.|+.|+||++......                        .......+|...|.+++
T Consensus        20 ~~l~~-------sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~~~v~~~~   68 (345)
T 3fm0_A           20 WFLAW-------NPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQRTVRKVA   68 (345)
T ss_dssp             EEEEE-------CTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccCCcEEEEE
Confidence            56666       899999999999999999998643211                        01112357999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCC--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc---cce
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFK  348 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~  348 (502)
                      |+|+ +.+|++|+.|++|++|++.++  +++..+.+|...|.+++|+|++ ++|++|+.|++|++||++.....   ...
T Consensus        69 ~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           69 WSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL  146 (345)
T ss_dssp             ECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             ECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence            9999 569999999999999998876  4678899999999999999998 89999999999999999876542   223


Q ss_pred             EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ..|...|.+++|+|++. ++++++.|+.|++|+++...       ..+...+.+|...|++++|+|++ .+|++|+.|++
T Consensus       147 ~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~-------~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~  217 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDD-------WVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRT  217 (345)
T ss_dssp             CCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             cCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCC-------EEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCe
Confidence            45778899999999865 79999999999999998652       13457788999999999999998 99999999999


Q ss_pred             EEEEECCCCC-------------eeEEEEecC-CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          429 VKLWDLSNNQ-------------PSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       429 i~vwd~~~~~-------------~~~~~~~~~-~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      |+||+.....             ..++..+.+ |...|++++|+|++.. |++++.|+.|++|++..+.
T Consensus       218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-EEEEETTSCEEEEEECTTS
T ss_pred             EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-EEEEeCCCeEEEEEeCCCC
Confidence            9999963221             123444444 8889999999999994 9999999999999987654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.3e-35  Score=284.98  Aligned_cols=306  Identities=11%  Similarity=0.109  Sum_probs=217.7

Q ss_pred             ccccccccCCCceEEEEEecCC----cceeEEEEEecCCCCC-CCeeeeeccccCC---CcceeeeecCCCCCCCCCCEE
Q 010748          141 DLEDMTINPNDAVIVCARNEDD----VSHLEVYILEESDGGD-PNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFM  212 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~----~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l  212 (502)
                      +|.+++|+|++++|++|+.+..    ...|++|.++...... ..+..++...+..   .++|+.+         +++.+
T Consensus        16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~---------~~~~~   86 (365)
T 4h5i_A           16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA---------SKGII   86 (365)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE---------ETTEE
T ss_pred             CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe---------CCCEE
Confidence            6999999999999999975432    1247788776554310 0122233222222   2345543         45556


Q ss_pred             EEe-----------cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748          213 AVG-----------SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       213 a~g-----------~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      ++|           +.++.|++|++...........                  .........+...+.+++|+|++. +
T Consensus        87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~fSpDg~-~  147 (365)
T 4h5i_A           87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT------------------SVDFDASTNADDYTKLVYISREGT-V  147 (365)
T ss_dssp             EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE------------------EECSSCCCCTTCCEEEEEECTTSS-C
T ss_pred             EEEECCCccEEEEecCCCcEEEEEecCCCceEEEee------------------eeceeecCCcccCEEEEEEcCCCC-E
Confidence            554           4577899998865332111000                  011112234556789999999955 5


Q ss_pred             EE--EEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc--eEeecCCeeE
Q 010748          282 LA--SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVES  357 (502)
Q Consensus       282 l~--sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~  357 (502)
                      |+  +++.|++|+|||+.+++++..+. |...|.+|+|+|++ .+|++++. +.+++|+..++.....  ...+...|.+
T Consensus       148 la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (365)
T 4h5i_A          148 AAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSK  224 (365)
T ss_dssp             EEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEE
T ss_pred             EEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEE
Confidence            54  55579999999999999998886 77889999999999 88888875 5566776666554322  2345667999


Q ss_pred             EEeCCCCCCEEEEEeCCC----cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          358 LAWDPHAEHSFVVSLEDG----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      ++|+|++. ++++++.++    .+++|++......     ......+..|..+|++++|+|++ .+||+|+.|++|+|||
T Consensus       225 v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd  297 (365)
T 4h5i_A          225 INFIADDT-VLIAASLKKGKGIVLTKISIKSGNTS-----VLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVK  297 (365)
T ss_dssp             EEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEE-----EEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEE
T ss_pred             EEEcCCCC-EEEEEecCCcceeEEeecccccceec-----ceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEE
Confidence            99999876 677777666    6888998765210     12245677899999999999998 9999999999999999


Q ss_pred             CCCCCeeEEEE-ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          434 LSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       434 ~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +.+++  ++.. +.+|.++|++++|+||++ +||+|+.|++|+||++..+....+
T Consensus       298 ~~~~~--~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~~~~~~  349 (365)
T 4h5i_A          298 LKDLS--MSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLNYANYT  349 (365)
T ss_dssp             TTTTE--EEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTTTTC--
T ss_pred             CCCCc--EEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcCcc
Confidence            99987  4555 478999999999999999 599999999999999976544333

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.9e-35  Score=297.23  Aligned_cols=290  Identities=14%  Similarity=0.202  Sum_probs=214.1

Q ss_pred             CCccccccccccCC-CceEEEEEecCCcceeEEEEEecCCCCCCCee--eeeccccCCCcceeeeecCCCCCCC-CCCEE
Q 010748          137 EDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLY--VHHHIIIPAFPLCMAWLDCPLKDRE-KGNFM  212 (502)
Q Consensus       137 ~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l  212 (502)
                      .|+..|++|+|+|+ +++||+|+.++   .+.||.+.....  ..+.  ..|.    ....|++|       +| ++++|
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg---~i~lWd~~~~~~--~~~~~~~gH~----~~V~~l~f-------~p~~~~~l  180 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGG---DIMLWNFGIKDK--PTFIKGIGAG----GSITGLKF-------NPLNTNQF  180 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTS---CEEEECSSCCSC--CEEECCCSSS----CCCCEEEE-------CSSCTTEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCC---EEEEEECCCCCc--eeEEEccCCC----CCEEEEEE-------eCCCCCEE
Confidence            46778999999995 57899999887   567776654432  1111  1232    23378888       55 68999


Q ss_pred             EEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEE
Q 010748          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~  292 (502)
                      ++|+.||+|+|||+.....                         ........+...+.+++|+|+ +.+|++|+.||.|+
T Consensus       181 ~s~s~D~~v~iwd~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~  234 (435)
T 4e54_B          181 YASSMEGTTRLQDFKGNIL-------------------------RVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVI  234 (435)
T ss_dssp             EEECSSSCEEEEETTSCEE-------------------------EEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEE
T ss_pred             EEEeCCCEEEEeeccCCce-------------------------eEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEe
Confidence            9999999999999864211                         111112245567899999999 56999999999999


Q ss_pred             EEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc---ceEeecCCeeEEEeCCCCCCEEE
Q 010748          293 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       293 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~v~~v~~~~~~~~~~~  369 (502)
                      +||+. ++.+..+.+|...|++++|+|.+..+|++|+.|++|++||+++.....   ....|...|.+++|+|++. +|+
T Consensus       235 ~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~  312 (435)
T 4e54_B          235 LLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLL  312 (435)
T ss_dssp             EEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEE
T ss_pred             eeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeE
Confidence            99986 567788899999999999999997799999999999999998866433   2346788999999999875 899


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC------CeeEEEEcCCCCCEEEEEe------------CCCcEEE
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------AVCTISYNPLVPNLLATGS------------TDKMVKL  431 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~------~v~~l~~sp~~~~~l~t~s------------~dg~i~v  431 (502)
                      +++.||.|++||+++.         .....+..|..      .+..+.|+|.+ .++++++            .++.|++
T Consensus       313 s~~~D~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~i  382 (435)
T 4e54_B          313 TTDQKSEIRVYSASQW---------DCPLGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDV  382 (435)
T ss_dssp             EEESSSCEEEEESSSS---------SSEEEECCCCCCCCSSSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEE
T ss_pred             EEcCCCEEEEEECCCC---------ccceEEecccccccccceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEE
Confidence            9999999999999986         33444444332      23344566655 4444443            3467999


Q ss_pred             EECCCCCeeEEEE-ecCCCCcEEEE-EEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          432 WDLSNNQPSCIAS-RNPKAGAVFSV-AFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       432 wd~~~~~~~~~~~-~~~~~~~v~~~-~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      ||..+++.  +.. ..+|...|.++ +|+|+|.+ |++|+ |+.|+||++.+++.
T Consensus       383 wd~~~g~~--~~~l~~~~~~~v~s~~~fspdg~~-lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          383 FDGNSGKM--MCQLYDPESSGISSLNEFNPMGDT-LASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             ECSSSCCE--EEEECCSSCCCCCCEEEECTTSSC-EEEEC-SSEEEECCCC----
T ss_pred             EECCCCcE--EEEEeCCCCCcEEEEEEECCCCCE-EEEEc-CCcEEEEECCcCee
Confidence            99999874  333 35677888887 69999984 77765 88999999988764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.1e-34  Score=306.77  Aligned_cols=287  Identities=19%  Similarity=0.323  Sum_probs=223.7

Q ss_pred             CCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCC---CeeeeeccccCCCcceeeeecCCCCCCCCCCEE
Q 010748          137 EDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDP---NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM  212 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  212 (502)
                      .|.+.|.+++|+|++ ++|++|+.++   .++||.+........   .....|.    ....|+.|       +|++++|
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~---~i~~W~~~~~~~~~~~~~~~~~~h~----~~v~~v~~-------s~~g~~l  445 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDK---SIILWKLTKDDKAYGVAQRRLTGHS----HFVEDVVL-------SSDGQFA  445 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTS---EEEEEECCCSTTCSCEEEEEEECCS----SCEEEEEE-------CTTSSEE
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCC---cEEEEEccCCCcccccccceecCCC----CcEEEEEE-------CCCCCEE
Confidence            589999999999975 6888998886   677777664432100   0112222    22356666       7999999


Q ss_pred             EEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEE
Q 010748          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~  292 (502)
                      ++|+.||.|+|||+.++..                           ...+.+|...|++++|+|+ +.+|++|+.|++|+
T Consensus       446 ~sgs~Dg~v~vwd~~~~~~---------------------------~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~  497 (694)
T 3dm0_A          446 LSGSWDGELRLWDLAAGVS---------------------------TRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTIK  497 (694)
T ss_dssp             EEEETTSEEEEEETTTTEE---------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSCEE
T ss_pred             EEEeCCCcEEEEECCCCcc---------------------------eeEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEEE
Confidence            9999999999999975322                           2245589999999999999 56899999999999


Q ss_pred             EEeCCCCeeeEee---ccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748          293 IWDVAAGKCNLTL---EHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       293 vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~  368 (502)
                      +||+.........   .+|...|.+++|+|++. .+|++|+.|++|++||+++.+.......|...|.+++|+|++. ++
T Consensus       498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l  576 (694)
T 3dm0_A          498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LC  576 (694)
T ss_dssp             EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EE
T ss_pred             EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EE
Confidence            9998755433322   46889999999999863 5899999999999999998887766678899999999999865 89


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-
Q 010748          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-  447 (502)
Q Consensus       369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-  447 (502)
                      ++|+.||.|++||++++         ..+..+. +...|.+++|+|++ .+|++++ ++.|+|||+.++..  +..+.. 
T Consensus       577 ~sg~~Dg~i~iwd~~~~---------~~~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~--~~~~~~~  642 (694)
T 3dm0_A          577 ASGGKDGVVLLWDLAEG---------KKLYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSI--VEDLKVD  642 (694)
T ss_dssp             EEEETTSBCEEEETTTT---------EEEECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEE--EEEECCC
T ss_pred             EEEeCCCeEEEEECCCC---------ceEEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCC--hhhhccc
Confidence            99999999999999986         4455444 45679999999987 7776665 56699999998763  222221 


Q ss_pred             ------------------CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          448 ------------------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       448 ------------------~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                                        +...+++++|+|+++ +|++|+.||.|+||++..
T Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             CC----------------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             cccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence                              122478999999999 599999999999999853

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.6e-36  Score=294.34  Aligned_cols=293  Identities=11%  Similarity=0.181  Sum_probs=215.0

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +...|.+++|+|++++|++|+.++   .+.||............+..|.    ....+++|       +|++++|++|+.
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~-------s~~~~~l~s~s~   75 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATN---QVELYEQDGNGWKHARTFSDHD----KIVTCVDW-------APKSNRIVTCSQ   75 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSS---CBCEEEEETTEEEECCCBCCCS----SCEEEEEE-------CTTTCCEEEEET
T ss_pred             CCCcEEEEEECCCCCEEEEecCCC---EEEEEEccCCceEEEEEEecCC----ceEEEEEE-------eCCCCEEEEEeC
Confidence            356899999999999999998776   5688887754200111222232    22367777       789999999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      |+.|+|||+......                        .....+.+|...|.+++|+|+ +.+|++|+.|++|++||+.
T Consensus        76 d~~v~vwd~~~~~~~------------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~  130 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTW------------------------KQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFE  130 (377)
T ss_dssp             TSSEEEC------CC------------------------CCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-
T ss_pred             CCeEEEEEcCCCCce------------------------eeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEEC
Confidence            999999999764311                        122334579999999999998 5699999999999999999


Q ss_pred             CCe---eeEeecc-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC------------------CccceEeecCCe
Q 010748          298 AGK---CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST------------------HSGFKWAVAADV  355 (502)
Q Consensus       298 ~~~---~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------------~~~~~~~~~~~v  355 (502)
                      +++   +...+.. |...|++++|+|++ .+|++++.|+.|++||++...                  ..... .|...|
T Consensus       131 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v  208 (377)
T 3dwl_C          131 QENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV  208 (377)
T ss_dssp             ----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE
T ss_pred             CcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE
Confidence            887   4777777 99999999999998 899999999999999986322                  12222 677889


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      .+++|+|++. ++++++.||.|++||+++....     ...+..+..|...|.+++|+|++ .+|++|+.++.+ +|+..
T Consensus       209 ~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          209 HAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQP-----PRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEEECTTSS-CEEEEETTTEEC-CEECSTTSC-----EEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCC
T ss_pred             EEEEECCCCC-EEEEEeCCCcEEEEECCCCCCc-----ceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeC
Confidence            9999999876 7999999999999999987210     01267788999999999999998 888888766655 77665


Q ss_pred             CCCee-------------------------------------EEE-------------EecCCCCcEEEEEEcCCCCc--
Q 010748          436 NNQPS-------------------------------------CIA-------------SRNPKAGAVFSVAFSEDSPF--  463 (502)
Q Consensus       436 ~~~~~-------------------------------------~~~-------------~~~~~~~~v~~~~~spd~~~--  463 (502)
                      .....                                     ...             ....|.+.|+++++.+....  
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~  360 (377)
T 3dwl_C          281 ESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNI  360 (377)
T ss_dssp             C---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEE
T ss_pred             CCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCce
Confidence            21100                                     000             01238899999998765543  


Q ss_pred             -EEEEEeCCCcEEEEEC
Q 010748          464 -VLAIGGSKGKLEIWDT  479 (502)
Q Consensus       464 -ll~sg~~dg~i~vwd~  479 (502)
                       .|+|||.||.|+|||+
T Consensus       361 ~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          361 TAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEETTSEEEEECC
T ss_pred             EEEEeecCCCcEEEecC
Confidence             5999999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-34  Score=289.17  Aligned_cols=298  Identities=12%  Similarity=0.167  Sum_probs=234.6

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      |...|.+++|+|++++|++|+.++   .+.+|.  .... ....+..|    .....++.|       +|++++|++++.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~~--~~~~-~~~~~~~~----~~~v~~~~~-------~~~~~~l~~~~~  169 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENG---ELRLWN--KTGA-LLNVLNFH----RAPIVSVKW-------NKDGTHIISMDV  169 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTS---CEEEEE--TTSC-EEEEECCC----CSCEEEEEE-------CTTSSEEEEEET
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCC---eEEEEe--CCCC-eeeeccCC----CccEEEEEE-------CCCCCEEEEEec
Confidence            577999999999999999999887   445554  2222 11111222    233467777       789999999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      +|.|++|++.+............            ............+...|.+++|+|+ + .+++++.+|.|++||+.
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~g~i~~~d~~  235 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKET------------GGSSINAENHSGDGSLGVDVEWVDD-D-KFVIPGPKGAIFVYQIT  235 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------------------CCCBSCCEEEET-T-EEEEECGGGCEEEEETT
T ss_pred             CCeEEEEECCCCcEEEEeecccc------------CccceeeccccCCcceeeEEEEcCC-C-EEEEEcCCCeEEEEEcC
Confidence            99999999976543322110000            0000000011122333999999997 3 68999999999999999


Q ss_pred             CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v  377 (502)
                      +++.+..+..|...|.+++|+|++ .+|++++.||.|++||+++.........+...+.+++|+|++  ++++++.+|.|
T Consensus       236 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i  312 (425)
T 1r5m_A          236 EKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSV  312 (425)
T ss_dssp             CSSCSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEE
T ss_pred             CCceeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcE
Confidence            999999999999999999999999 899999999999999999888777666788999999999976  89999999999


Q ss_pred             EEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe------------------
Q 010748          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------------------  439 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~------------------  439 (502)
                      ++||+++.         ..+..+..|...|.+++|+|++ .+|++++.||.|++||+.+...                  
T Consensus       313 ~i~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (425)
T 1r5m_A          313 RLWSLKQN---------TLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPI  382 (425)
T ss_dssp             EEEETTTT---------EEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEEC
T ss_pred             EEEECCCC---------cEeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccc
Confidence            99999886         7788888999999999999998 8999999999999999987550                  


Q ss_pred             eEEEEecCCCC--cEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          440 SCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       440 ~~~~~~~~~~~--~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      ..+..+..|..  .|++++|+|+++ +|++++.||.|++|++.
T Consensus       383 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          383 PLYASYQSSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CEEEEECCTTCCCCEEEEEECTTSS-EEEEEESSSCCEEEECC
T ss_pred             hhhhhhcCcccCCceEEEEccCCCc-eEEEEecCceEEEEeec
Confidence            14667777866  999999999999 58899999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.4e-34  Score=274.65  Aligned_cols=249  Identities=25%  Similarity=0.412  Sum_probs=210.4

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|++++||+|+.||.|+||++..+.                           ....+.+|...|.+++
T Consensus        27 ~~~~~-------s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------~~~~~~~h~~~v~~~~   72 (312)
T 4ery_A           27 SSVKF-------SPNGEWLASSSADKLIKIWGAYDGK---------------------------FEKTISGHKLGISDVA   72 (312)
T ss_dssp             EEEEE-------CTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEeeCCCeEEEEeCCCcc---------------------------cchhhccCCCceEEEE
Confidence            67777       7999999999999999999986532                           1223457999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      |+|+ +++|++|+.|+.|++||+.+++++..+.+|...|.++.|+|++ .+|++|+.|+.|++||+++.+.......+..
T Consensus        73 ~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  150 (312)
T 4ery_A           73 WSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSD  150 (312)
T ss_dssp             ECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EcCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence            9999 5699999999999999999999999999999999999999998 8999999999999999998877666667888


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .|.+++|+|++. ++++++.||.|++||+++.         ..+..+ ..+...+.+++|+|++ .+|++++.|+.|++|
T Consensus       151 ~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iw  219 (312)
T 4ery_A          151 PVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG---------QCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLW  219 (312)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTC---------CEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEE
T ss_pred             cEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------ceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEE
Confidence            999999999765 8999999999999999986         444444 4567789999999998 899999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCcE--EEEEEc-CCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          433 DLSNNQPSCIASRNPKAGAV--FSVAFS-EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v--~~~~~s-pd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      |+.+++  ++..+.+|...+  ....++ +++. +|++|+.||.|++||+.+++.+....+|.
T Consensus       220 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~  279 (312)
T 4ery_A          220 DYSKGK--CLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHT  279 (312)
T ss_dssp             ETTTTE--EEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred             ECCCCc--EEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchhhhhhhccC
Confidence            999887  455666665432  223444 5566 69999999999999999998887665553

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.7e-34  Score=276.46  Aligned_cols=248  Identities=19%  Similarity=0.268  Sum_probs=207.4

Q ss_pred             ceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          194 LCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .+++|       +|+ +++|++|+.|++|++|++......                      .......+.+|...|.++
T Consensus        21 ~~l~~-------~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~~~v~~~   71 (319)
T 3frx_A           21 TSLAT-------SAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHSHIVQDC   71 (319)
T ss_dssp             EEEEE-------CSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCSSCEEEE
T ss_pred             EEEEc-------cCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCcccEEEE
Confidence            57776       564 589999999999999998632211                      122334566899999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      +|+|+ +.+|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||++.. .......|.
T Consensus        72 ~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~  148 (319)
T 3frx_A           72 TLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-CLATLLGHN  148 (319)
T ss_dssp             EECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-EEEEECCCS
T ss_pred             EECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEeccC
Confidence            99999 5699999999999999999999999999999999999999998 89999999999999999754 334455788


Q ss_pred             CCeeEEEeCCCC-----CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748          353 ADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       353 ~~v~~v~~~~~~-----~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      ..|.++.|.|..     ...+++++.|+.|++||+++.         .....+.+|...|++++|+|++ .+|++|+.||
T Consensus       149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg  218 (319)
T 3frx_A          149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---------QIEADFIGHNSNINTLTASPDG-TLIASAGKDG  218 (319)
T ss_dssp             SCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---------EEEEEECCCCSCEEEEEECTTS-SEEEEEETTC
T ss_pred             CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---------hhheeecCCCCcEEEEEEcCCC-CEEEEEeCCC
Confidence            899999999853     337999999999999999876         6777888999999999999998 9999999999


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .|++||+.+++  ++..+..+ ..|.+++|+|++. +|++++. +.+++|++.....+...
T Consensus       219 ~i~iwd~~~~~--~~~~~~~~-~~v~~~~~sp~~~-~la~~~~-~~i~v~~~~~~~~~~~~  274 (319)
T 3frx_A          219 EIMLWNLAAKK--AMYTLSAQ-DEVFSLAFSPNRY-WLAAATA-TGIKVFSLDPQYLVDDL  274 (319)
T ss_dssp             EEEEEETTTTE--EEEEEECC-SCEEEEEECSSSS-EEEEEET-TEEEEEEETTEEEEEEE
T ss_pred             eEEEEECCCCc--EEEEecCC-CcEEEEEEcCCCC-EEEEEcC-CCcEEEEeCcCeeeecc
Confidence            99999999887  44455443 6799999999998 4776665 46999999877655443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.2e-33  Score=280.73  Aligned_cols=290  Identities=21%  Similarity=0.348  Sum_probs=226.3

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      -..+.|.|+++ ++|++|. ++     .|++|+...+....++..+  .......|++|       +|+|++||+|+.||
T Consensus       106 ~y~~~l~wS~~-n~lAvgl-d~-----tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~f-------spdg~~lasgs~Dg  169 (420)
T 4gga_A          106 YYLNLVDWSSG-NVLAVAL-DN-----SVYLWSASSGDILQLLQME--QPGEYISSVAW-------IKEGNYLAVGTSSA  169 (420)
T ss_dssp             TTCBCEEECTT-SEEEEEE-TT-----EEEEEETTTCCEEEEEECC--STTCCEEEEEE-------CTTSSEEEEEETTS
T ss_pred             ccceeEEECCC-CEEEEEe-CC-----EEEEEECCCCCEEEEEEec--CCCCcEEEEEE-------CCCCCEEEEEECCC
Confidence            34677999975 5777775 55     5555555544111111111  11233478888       79999999999999


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|+|||+.++.                           ....+.+|...|.+++|++   .+|++|+.|+.+++||....
T Consensus       170 ~v~iWd~~~~~---------------------------~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          170 EVQLWDVQQQK---------------------------RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             CEEEEETTTTE---------------------------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSS
T ss_pred             eEEEEEcCCCc---------------------------EEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccc
Confidence            99999997633                           2234558999999999875   48999999999999998864


Q ss_pred             -eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc----cceEeecCCeeEEEeCCCCCCEEEEE--e
Q 010748          300 -KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVS--L  372 (502)
Q Consensus       300 -~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~v~~v~~~~~~~~~~~~~--~  372 (502)
                       ..+..+.+|...+.++.|+|.+ .++++++.|+.+++|+.+.....    .....+...|.+++|+|.+..+++++  +
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs  298 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT  298 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred             ceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence             5567889999999999999999 89999999999999999876532    23446778899999999988887764  4


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCeeEEEEecCCCC
Q 010748          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       373 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      .|+.|++||++++         .+...+.. ...+.++.|+|++ ..+++++  .|+.|+|||+.+++  ++..+.+|.+
T Consensus       299 ~D~~I~iwd~~t~---------~~~~~~~~-~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~gH~~  365 (420)
T 4gga_A          299 SDRHIRIWNVCSG---------ACLSAVDA-HSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMA--KVAELKGHTS  365 (420)
T ss_dssp             TTCEEEEEETTTT---------EEEEEEEC-SSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCC--EEEEECCCSS
T ss_pred             CCCEEEEEeCCcc---------ccceeecc-ccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCc--EEEEEcCCCC
Confidence            7999999999986         55666654 4568999999998 5665544  68999999999988  6778899999


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      .|++++|+|++.+ |+||+.||+|+|||+......++.-.
T Consensus       366 ~V~~l~~spdg~~-l~S~s~D~tvriWdv~~~~~~~~~~~  404 (420)
T 4gga_A          366 RVLSLTMSPDGAT-VASAAADETLRLWRCFELDPARRRER  404 (420)
T ss_dssp             CEEEEEECTTSSC-EEEEETTTEEEEECCSCSSCC-----
T ss_pred             CEEEEEEcCCCCE-EEEEecCCeEEEEECCCCCccchhhh
Confidence            9999999999995 99999999999999988766554433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.7e-34  Score=276.16  Aligned_cols=243  Identities=21%  Similarity=0.292  Sum_probs=196.9

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +++++||+|+.|++|+||++.......                    ........+.+|...|.+++|+|+ +.+|++|+
T Consensus        37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s   95 (343)
T 2xzm_R           37 EDSPVLISGSRDKTVMIWKLYEEEQNG--------------------YFGIPHKALTGHNHFVSDLALSQE-NCFAISSS   95 (343)
T ss_dssp             CCCCEEEEEETTSCEEEEEECSSCCSS--------------------BSEEEEEEECCCSSCEEEEEECSS-TTEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCcCCccc--------------------ccccccchhccCCCceEEEEECCC-CCEEEEEc
Confidence            489999999999999999987532211                    011223356689999999999999 56999999


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc--eEeecCCeeEEEeCCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHA  364 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~  364 (502)
                      .|++|++||+.+++++..+.+|...|.+++|+|++ .+|++++.|++|++||++.......  ...+...|.+++|+|.+
T Consensus        96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R           96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence            99999999999999999999999999999999999 8999999999999999974322111  11567789999999976


Q ss_pred             C---------CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          365 E---------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       365 ~---------~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      .         .++++++.||.|++||.+          ......+.+|...|++++|+|++ .+|++|+.||.|++||+.
T Consensus       175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~----------~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          175 KSANKVQPFAPYFASVGWDGRLKVWNTN----------FQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CSCSCCCSSCCEEEEEETTSEEEEEETT----------TEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESS
T ss_pred             ccccccCCCCCEEEEEcCCCEEEEEcCC----------CceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECC
Confidence            2         489999999999999943          25667888999999999999998 999999999999999995


Q ss_pred             CCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          436 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      .... ....+ .+...|.+++|+|++. +|+ ++.++.|++|++.++....
T Consensus       244 ~~~~-~~~~~-~~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          244 NLTY-PQREF-DAGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             CCSS-CSEEE-ECSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCS
T ss_pred             CCcc-cceee-cCCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCc
Confidence            4332 12222 2345799999999997 455 4567889999998876543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.6e-35  Score=281.39  Aligned_cols=249  Identities=22%  Similarity=0.326  Sum_probs=199.9

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|+|++||+|+.|++|+|||+..+.                         ......+.+|...|++++
T Consensus        17 ~~v~~-------s~~g~~lasgs~D~~v~lwd~~~~~-------------------------~~~~~~l~gH~~~V~~v~   64 (316)
T 3bg1_A           17 HDAQM-------DYYGTRLATCSSDRSVKIFDVRNGG-------------------------QILIADLRGHEGPVWQVA   64 (316)
T ss_dssp             EEEEE-------CGGGCEEEEEETTTEEEEEEEETTE-------------------------EEEEEEEECCSSCEEEEE
T ss_pred             EEeeE-------cCCCCEEEEEeCCCeEEEEEecCCC-------------------------cEEEEEEcCCCccEEEEE
Confidence            57776       7899999999999999999986421                         112234568999999999


Q ss_pred             eccC-CCcEEEEEecCCcEEEEeCCCC--eeeEeeccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCC---cc
Q 010748          274 WNKE-FRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTH---SG  346 (502)
Q Consensus       274 ~~~~-~~~~l~sgs~dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~---~~  346 (502)
                      |++. .+.+|++|+.|++|++||+.++  +++..+.+|...|.+++|+|++ ..+|++|+.|++|++||++....   ..
T Consensus        65 ~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~  144 (316)
T 3bg1_A           65 WAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK  144 (316)
T ss_dssp             ECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC
T ss_pred             eCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee
Confidence            9753 3569999999999999999987  4667788999999999999982 27999999999999999987532   12


Q ss_pred             ceEeecCCeeEEEeCCCC----------------CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE
Q 010748          347 FKWAVAADVESLAWDPHA----------------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~----------------~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  410 (502)
                      ....|...+.+++|+|+.                ..+|++|+.|+.|++||++....      ..++..+.+|...|.++
T Consensus       145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------~~~~~~l~~h~~~V~~v  218 (316)
T 3bg1_A          145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ------WKEEQKLEAHSDWVRDV  218 (316)
T ss_dssp             BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC------EEEEECCBCCSSCEEEE
T ss_pred             eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc------cceeeecccCCCceEEE
Confidence            233567789999999963                24799999999999999975310      13556778999999999


Q ss_pred             EEcCCC---CCEEEEEeCCCcEEEEECCCCC--eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          411 SYNPLV---PNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       411 ~~sp~~---~~~l~t~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +|+|++   ..+|++|+.|++|+||++.+..  ......+..|.+.|++++|+|++++ |++|+.||.|+||+...
T Consensus       219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~-las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI-LAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC-EEEEESSSCEEEEEECT
T ss_pred             EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEECC
Confidence            999975   3789999999999999997631  0011223457789999999999995 99999999999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-33  Score=273.49  Aligned_cols=255  Identities=20%  Similarity=0.306  Sum_probs=212.9

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||.|+||++......                       ......+.+|...|++++
T Consensus        15 ~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------------~~~~~~~~~~~~~v~~~~   64 (351)
T 3f3f_A           15 HDVVY-------DFYGRHVATCSSDQHIKVFKLDKDTSN-----------------------WELSDSWRAHDSSIVAID   64 (351)
T ss_dssp             EEEEE-------CSSSSEEEEEETTSEEEEEEECSSSCC-----------------------EEEEEEEECCSSCEEEEE
T ss_pred             eEEEE-------cCCCCEEEEeeCCCeEEEEECCCCCCc-----------------------ceecceeccCCCcEEEEE
Confidence            78887       789999999999999999999753221                       123334568999999999


Q ss_pred             eccC-CCcEEEEEecCCcEEEEeCCCC---------eeeEeeccCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEecCC
Q 010748          274 WNKE-FRNILASASADKQVKIWDVAAG---------KCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       274 ~~~~-~~~~l~sgs~dg~v~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~  341 (502)
                      |+|. .+.+|++|+.||+|++||+.++         +++..+..|...|.+++|+|+  + .+|++++.||.|++||+++
T Consensus        65 ~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           65 WASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSS
T ss_pred             EcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCC
Confidence            9994 2569999999999999999887         668888899999999999999  7 8999999999999999998


Q ss_pred             CCCccceE-------------eecCCeeEEEeCCC--CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC
Q 010748          342 STHSGFKW-------------AVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA  406 (502)
Q Consensus       342 ~~~~~~~~-------------~~~~~v~~v~~~~~--~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~  406 (502)
                      ........             .+...+.+++|+|+  ...++++++.++.+.+|+.....       ...+..+.+|...
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~  216 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSL  216 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSC
T ss_pred             hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcc
Confidence            77544322             35667999999997  35589999999999888877652       1346778889999


Q ss_pred             eeEEEEcCCCC---CEEEEEeCCCcEEEEECCCCC--------------------------------------------e
Q 010748          407 VCTISYNPLVP---NLLATGSTDKMVKLWDLSNNQ--------------------------------------------P  439 (502)
Q Consensus       407 v~~l~~sp~~~---~~l~t~s~dg~i~vwd~~~~~--------------------------------------------~  439 (502)
                      |++++|+|+++   .+|++|+.||.|++||++...                                            .
T Consensus       217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (351)
T 3f3f_A          217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV  296 (351)
T ss_dssp             EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEE
T ss_pred             eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence            99999999863   699999999999999997641                                            2


Q ss_pred             eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ..+..+.+|.+.|++++|+|++++ |++|+.||.|+||++.++..+..
T Consensus       297 ~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          297 ELLSEHDDHNGEVWSVSWNLTGTI-LSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             EEEEEECTTSSCEEEEEECSSSCC-EEEEETTSCEEEEEECTTSCEEE
T ss_pred             cEEEEEecccccEEEEEEcCCCCE-EEEecCCCcEEEEecCcCcchhh
Confidence            456777889999999999999995 99999999999999998876543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=272.09  Aligned_cols=244  Identities=21%  Similarity=0.359  Sum_probs=192.7

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCccccccc--ccCcccceee
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYK--KGSHTDSVLG  271 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~  271 (502)
                      .++.|       +++  +||+|+.|+.|+||++.....                         .....  ..+|...|.+
T Consensus        18 ~~~~~-------s~~--~las~~~D~~i~lw~~~~~~~-------------------------~~~~~~~~~~h~~~v~~   63 (330)
T 2hes_X           18 WSFDF-------SQG--ILATGSTDRKIKLVSVKYDDF-------------------------TLIDVLDETAHKKAIRS   63 (330)
T ss_dssp             EEEEE-------ETT--EEEEEESSSCEEEEECSSSCC-------------------------EEEEEECTTCCCSCEEE
T ss_pred             eeecc-------CCC--EEEEEcCCCEEEEEEecCCCe-------------------------EEEEEEecCCccCCEEE
Confidence            56665       444  999999999999999974321                         00111  1249999999


Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCCC-------CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-  343 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-  343 (502)
                      ++|+|+ +.+|++|+.|++|+||++..       .+++..+.+|...|.+++|+|++ ++|++|+.|++|++||++... 
T Consensus        64 v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~  141 (330)
T 2hes_X           64 VAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGE  141 (330)
T ss_dssp             EEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCC
T ss_pred             EEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCC
Confidence            999999 56999999999999999853       45677889999999999999998 899999999999999995432 


Q ss_pred             ---CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC-CCE
Q 010748          344 ---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-PNL  419 (502)
Q Consensus       344 ---~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~  419 (502)
                         .......|...|.+++|+|++. +|++++.|+.|++||++...       ..++..+.+|...|.+++|+|++ ..+
T Consensus       142 ~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~  213 (330)
T 2hes_X          142 EYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDD-------WECVAVLNGHEGTVWSSDFDKTEGVFR  213 (330)
T ss_dssp             CCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred             CeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCC-------eeEEEEccCCCCcEEEEEecCCCCeeE
Confidence               2233446788999999999765 89999999999999987641       25677889999999999999983 268


Q ss_pred             EEEEeCCCcEEEEECCCCCe------eEEEEecC-CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          420 LATGSTDKMVKLWDLSNNQP------SCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~------~~~~~~~~-~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      |++|+.|++|++|++.....      .+...+.. |...|++++|++++  +|++++.||.|+||++.++.
T Consensus       214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE
T ss_pred             EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc
Confidence            99999999999999865421      23444444 88999999999776  48999999999999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-34  Score=288.30  Aligned_cols=300  Identities=14%  Similarity=0.164  Sum_probs=223.5

Q ss_pred             CCCccccccccccC-CCceEEEEEecCCcceeEEEEEec---CCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748          136 DEDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEE---SDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  211 (502)
                      ..|...|.+++|+| ++++|++|+.++   .++||.+..   .......+...|.    ....|++|       +|++++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~h~----~~v~~~~~-------~~~~~~  125 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQG---VIKIWNLKEIIVGEVYSSSLTYDCS----STVTQITM-------IPNFDA  125 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTS---EEEEEEHHHHHTTCCCSCSEEEECS----SCEEEEEE-------CTTSSE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCc---eEEEeECcccccCcccceeeeccCC----CCEEEEEE-------eCCCCE
Confidence            45889999999999 999999999887   667777665   2211112222333    33478887       689999


Q ss_pred             EEEecCCCcEEEeeCC---CCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE--eccCCCcEEEEEe
Q 010748          212 MAVGSMEPAIEIWDLD---VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA--WNKEFRNILASAS  286 (502)
Q Consensus       212 la~g~~dg~I~iwdl~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~~l~sgs  286 (502)
                      |++|+.||.|++||+.   .+.....   +..            ...........++...+.++.  ++++ +.+|++|+
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~  189 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKF---LNC------------ECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALT  189 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEE---EEE------------EEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEE
T ss_pred             EEEEeCCCEEEEEEeccccCCceeec---ccc------------ceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEe
Confidence            9999999999999995   2211110   000            000000111111667788887  5577 67999999


Q ss_pred             cCCcEEEEeCCCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH  363 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~  363 (502)
                      .||.|++||+.+++++..+..  |...|++++|+|++ .+|++|+.||.|++||+++........ .+...|.+++|+|.
T Consensus       190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence            999999999999999999987  89999999999998 899999999999999999876554332 55668999977763


Q ss_pred             ---CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe------------------------c--cCCCeeEEEEcC
Q 010748          364 ---AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH------------------------A--HDKAVCTISYNP  414 (502)
Q Consensus       364 ---~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~------------------------~--h~~~v~~l~~sp  414 (502)
                         ...++++|+.||.|++||++++         ..+..+.                        +  |...|++++|+ 
T Consensus       269 ~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-  338 (437)
T 3gre_A          269 YGKNSVIVVGGSSKTFLTIWNFVKG---------HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-  338 (437)
T ss_dssp             TCTTEEEEEEESTTEEEEEEETTTT---------EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred             cCCCccEEEEEcCCCcEEEEEcCCC---------cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence               2348999999999999999876         3333332                        2  66778999999 


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-----------------------------------cCCCCcEEEEEEcC
Q 010748          415 LVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----------------------------------NPKAGAVFSVAFSE  459 (502)
Q Consensus       415 ~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-----------------------------------~~~~~~v~~~~~sp  459 (502)
                      ++ .+|++|+.|+.|++||+.+++.......                                   ..|...|++++|++
T Consensus       339 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~  417 (437)
T 3gre_A          339 ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCE  417 (437)
T ss_dssp             TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEE
T ss_pred             Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeec
Confidence            45 8999999999999999998764322221                                   12889999999999


Q ss_pred             C--CCcEEEEEeCCCcEEEEE
Q 010748          460 D--SPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       460 d--~~~ll~sg~~dg~i~vwd  478 (502)
                      +  +. +|++|+.||.|+||+
T Consensus       418 ~~~~~-~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          418 VDETP-LLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SSSSE-EEEEEETTSCEEEEC
T ss_pred             cCCce-EEEEEcCCceEEEeC
Confidence            8  55 799999999999995

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8e-33  Score=274.55  Aligned_cols=303  Identities=14%  Similarity=0.216  Sum_probs=224.4

Q ss_pred             CCccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCCeeee---------eccccCCCcceeeeecCCCCCC
Q 010748          137 EDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH---------HHIIIPAFPLCMAWLDCPLKDR  206 (502)
Q Consensus       137 ~~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~s  206 (502)
                      .|...|.+++|+| ++++|++|+.++   .+.||.+.....  ...+..         +.........+++|       +
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg---~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~  108 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDG---VIVLYDLENSSR--QSYYTCKAVCSIGRDHPDVHRYSVETVQW-------Y  108 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTS---CEEEEECCCCSS--SSCEEECEEEEECTTCTTCCSSCEEEEEE-------C
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCC---eEEEEECCCCcc--cceEeccccccccccccccCCCcEEEEEE-------c
Confidence            3888999999999 999999999887   567777665443  111110         00012233467777       5


Q ss_pred             C-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC--CcEEE
Q 010748          207 E-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILA  283 (502)
Q Consensus       207 ~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~  283 (502)
                      | ++++|++|+.||.|++|++.+.....                           . ..+...+.++.|++.+  ..+|+
T Consensus       109 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------------------------~-~~~~~~~~~~~~~~~~~~~~~~~  160 (408)
T 4a11_B          109 PHDTGMFTSSSFDKTLKVWDTNTLQTAD---------------------------V-FNFEETVYSHHMSPVSTKHCLVA  160 (408)
T ss_dssp             TTCTTCEEEEETTSEEEEEETTTTEEEE---------------------------E-EECSSCEEEEEECSSCSSCCEEE
T ss_pred             cCCCcEEEEEeCCCeEEEeeCCCCccce---------------------------e-ccCCCceeeeEeecCCCCCcEEE
Confidence            6 78899999999999999997533211                           1 1366789999999863  34999


Q ss_pred             EEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce---------------
Q 010748          284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---------------  348 (502)
Q Consensus       284 sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------------  348 (502)
                      +|+.+|.|++||+.+++++..+..|...|.+++|+|++..+|++|+.||.|++||++........               
T Consensus       161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (408)
T 4a11_B          161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA  240 (408)
T ss_dssp             EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred             EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence            99999999999999999999999999999999999999557999999999999999876522211               


Q ss_pred             -EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748          349 -WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       349 -~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                       ..+...|.+++|+|++. ++++++.||.|++||+++.......    ...........+.. .+.......+++++.++
T Consensus       241 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  314 (408)
T 4a11_B          241 NTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVN----YGKVCNNSKKGLKF-TVSCGCSSEFVFVPYGS  314 (408)
T ss_dssp             SCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCC----CCCCCCCCSSCCCC-EECCSSSSCEEEEEETT
T ss_pred             cccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceec----ccccccccccccee-EEecCCCceEEEEecCC
Confidence             35778899999999765 8999999999999999987321100    00000111112222 22222236677778899


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .|++||+.+++  .+..+.+|.+.|++++|+|+++ +|++|+.||.|++|++.+++.+...
T Consensus       315 ~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          315 TIAVYTVYSGE--QITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             EEEEEETTTCC--EEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC-------
T ss_pred             EEEEEECcCCc--ceeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCCccCCC
Confidence            99999999988  5777889999999999999998 5999999999999999998877543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.1e-33  Score=280.65  Aligned_cols=319  Identities=13%  Similarity=0.211  Sum_probs=220.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC------C---CCeeeeec--------cccCCCcceeeee
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG------D---PNLYVHHH--------IIIPAFPLCMAWL  199 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~------~---~~l~~~~~--------~~~~~~~~~~~~~  199 (502)
                      .+.+.|.+++|+|++++||+|+.++   .+.||.+......      .   ...+..|.        ..+.....+++| 
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~-  101 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGG---RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW-  101 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTS---EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE-
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCC---eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE-
Confidence            3678999999999999999999887   5677776644310      0   01111221        001133567777 


Q ss_pred             cCCCCCCCCC--CEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccc-cC------------CcccccccccC
Q 010748          200 DCPLKDREKG--NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSK-KG------------KKSSIKYKKGS  264 (502)
Q Consensus       200 ~~~~~~s~~~--~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~-~~------------~~~~~~~~~~~  264 (502)
                            +|++  .+|++|+.|+.|++|++...........+............. ..            ..........+
T Consensus       102 ------~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B          102 ------LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             ------CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             ------cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence                  6777  899999999999999987533211000000000000000000 00            00001122468


Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCC-CeeeE-------eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNL-------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~i  336 (502)
                      |...|++++|+|+ +.+|++| .|++|++||+.+ ++++.       .+.+|...|++++|+|++..+|++|+.||.|++
T Consensus       176 h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          176 HTYHINSISINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             CSSCCCEEEECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCcceEEEEEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            9999999999998 5689998 799999999984 44444       356899999999999998789999999999999


Q ss_pred             EecCCCCC----ccceEeecC------------CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE
Q 010748          337 KDARISTH----SGFKWAVAA------------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       337 wd~~~~~~----~~~~~~~~~------------~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  400 (502)
                      ||+++...    ......+..            .|.+++|+|++. ++++++. |.|++||+++.        ..++..+
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~--------~~~~~~~  323 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNME--------NRPVETY  323 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCC--------SSCSCCE
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCC--------cccccee
Confidence            99998775    333334443            899999999765 7888888 99999999973        2566777


Q ss_pred             eccCCC---------------eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe--------------------
Q 010748          401 HAHDKA---------------VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR--------------------  445 (502)
Q Consensus       401 ~~h~~~---------------v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~--------------------  445 (502)
                      ..|...               +..++|+|++ .+|++|+.||.|++||+.+++...+...                    
T Consensus       324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (447)
T 3dw8_B          324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGK  402 (447)
T ss_dssp             ESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSC
T ss_pred             eccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCC
Confidence            777532               3349999998 8999999999999999998874322111                    


Q ss_pred             ----------cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          446 ----------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       446 ----------~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                                ..+...|.+++|+|++. +||+++.++ +++|..+
T Consensus       403 ~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          403 RKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSC-EEEEECC
T ss_pred             cccccccccccccCCceeEEEECCCCC-EEEEEecce-eeeeccc
Confidence                      12345688999999999 588877765 8888754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.1e-33  Score=303.13  Aligned_cols=291  Identities=19%  Similarity=0.256  Sum_probs=239.1

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++|++|+.++   .+.||.+.....  ...+..|    .....++.|       +|++++||+|+
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g---~v~iwd~~~~~~--~~~~~~~----~~~v~~~~~-------s~~~~~l~~~~   74 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSG---RVEIWNYETQVE--VRSIQVT----ETPVRAGKF-------IARKNWIIVGS   74 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTS---EEEEEETTTTEE--EEEEECC----SSCEEEEEE-------EGGGTEEEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCC---EEEEEECCCCce--EEEEecC----CCcEEEEEE-------eCCCCEEEEEe
Confidence            4788999999999999999999776   455555433221  1111222    233467887       68999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .+|.|+||++.++..                           ...+.+|...|++++|+|+ +.+|++|+.||+|++||+
T Consensus        75 ~dg~i~vw~~~~~~~---------------------------~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           75 DDFRIRVFNYNTGEK---------------------------VVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             TTSEEEEEETTTCCE---------------------------EEEEECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEG
T ss_pred             CCCeEEEEECCCCcE---------------------------EEEEecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEEC
Confidence            999999999976432                           2234579999999999999 558999999999999999


Q ss_pred             CCC-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec-CCeeEEEeCC--CCCCEEEEEe
Q 010748          297 AAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDP--HAEHSFVVSL  372 (502)
Q Consensus       297 ~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~--~~~~~~~~~~  372 (502)
                      .++ .....+.+|...|.+++|+|.++.+|++++.||.|++||+++.........+. ..+.+++|+|  ++. ++++++
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~  205 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITAS  205 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEEC
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEe
Confidence            987 77788889999999999999433899999999999999998877665444443 8899999999  654 899999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcE
Q 010748          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       373 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      .+|.|++||+++.         ..+..+..|...|++++|+|++ .+|++++.||.|++||+.+++  .+..+..|...+
T Consensus       206 ~dg~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~v  273 (814)
T 3mkq_A          206 DDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERS  273 (814)
T ss_dssp             TTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCS--EEEEECCSSSSE
T ss_pred             CCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--EEEEeecCCCcE
Confidence            9999999999886         6788889999999999999998 899999999999999999887  567778888999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      .+++|+|++..++++++.++.+.+|++.....
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          274 WCIATHPTGRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             EEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred             EEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence            99999999976545556677899999876543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-33  Score=275.37  Aligned_cols=250  Identities=23%  Similarity=0.353  Sum_probs=207.4

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||.|+||++....                         ......+.+|...|++++
T Consensus        15 ~~~~~-------s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------~~~~~~~~~h~~~v~~~~   62 (379)
T 3jrp_A           15 HDAVL-------DYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRVD   62 (379)
T ss_dssp             EEEEE-------CSSSSEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCSSCEEEEE
T ss_pred             EEEEE-------cCCCCEEEEEECCCcEEEEecCCCc-------------------------ceeeeEecCCCCcEEEEE
Confidence            67777       7899999999999999999986311                         223334568999999999


Q ss_pred             eccC-CCcEEEEEecCCcEEEEeCCCCe--eeEeeccCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCCc--c
Q 010748          274 WNKE-FRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHS--G  346 (502)
Q Consensus       274 ~~~~-~~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~--~  346 (502)
                      |+++ .+.+|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  + .+|++++.|+.|++||++.....  .
T Consensus        63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           63 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             eCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeE
Confidence            9865 24699999999999999999987  77888889999999999999  6 89999999999999999987443  2


Q ss_pred             ceEeecCCeeEEEeCCC------------CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748          347 FKWAVAADVESLAWDPH------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~------------~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      ....+...|.+++|+|.            ...++++++.||.|++||+++....     ......+.+|...|++++|+|
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp  216 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSP  216 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECC
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-----eeeEEEEecccCcEeEEEECC
Confidence            34467889999999994            3458999999999999999876210     134567788999999999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEECCCCCe---eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          415 LV--PNLLATGSTDKMVKLWDLSNNQP---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       415 ~~--~~~l~t~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      ++  +.+|++++.||.|++||+..+..   ..+.....|...|++++|+|++.+ |++++.||.|++|++...
T Consensus       217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEESSSSEEEEEEEET
T ss_pred             CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE-EEEecCCCcEEEEeCCCC
Confidence            93  39999999999999999988642   233333458889999999999995 888999999999999854

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.9e-33  Score=280.84  Aligned_cols=286  Identities=13%  Similarity=0.153  Sum_probs=220.6

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+....++|++++|++|+.++   .+.||.+.  .......+..|    .....|++|       +|++++|++|+.|+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~--~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~s~s~d~  161 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEG---DIKVLDSN--FNLQREIDQAH----VSEITKLKF-------FPSGEALISSSQDM  161 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTS---CEEEECTT--SCEEEEETTSS----SSCEEEEEE-------CTTSSEEEEEETTS
T ss_pred             CceEEEEEecCCCEEEEEECCC---CEEEEeCC--Ccceeeecccc----cCccEEEEE-------CCCCCEEEEEeCCC
Confidence            4455557899999999999887   44555443  32111111122    334477777       78999999999999


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|++||+.+...+                           ..+.+|...|++++|+|+ +.+|++|+.||+|++||+.++
T Consensus       162 ~i~iwd~~~~~~~---------------------------~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          162 QLKIWSVKDGSNP---------------------------RTLIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             EEEEEETTTCCCC---------------------------EEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTT
T ss_pred             eEEEEeCCCCcCc---------------------------eEEcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCC
Confidence            9999999754322                           234579999999999999 569999999999999999999


Q ss_pred             eeeEeecc---CCCCeEEE---------------------EEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCC
Q 010748          300 KCNLTLEH---HTDKVQAV---------------------AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAAD  354 (502)
Q Consensus       300 ~~~~~~~~---h~~~v~~l---------------------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~  354 (502)
                      +++..+..   |...|.++                     +|+|++ .+|++|+.||.|++||+++........ .+...
T Consensus       214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence            99988864   34445554                     457777 899999999999999999877654333 36678


Q ss_pred             eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      |.+++|+|++..++++|+.||.|++||+++.        ..++..+.. |...|+++.+. ++ .+|++++.|+.|++|+
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSP--------ECPVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCT--------TSCSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEE
T ss_pred             ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC--------cCchhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEe
Confidence            9999999988779999999999999999987        355677766 67788888665 45 7999999999999999


Q ss_pred             CCCCCe-------eEEEEecCCCCcEEEEEEcCCCC---cEEEEEeCCCcEEEEECCC
Q 010748          434 LSNNQP-------SCIASRNPKAGAVFSVAFSEDSP---FVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       434 ~~~~~~-------~~~~~~~~~~~~v~~~~~spd~~---~ll~sg~~dg~i~vwd~~~  481 (502)
                      +.....       ........|.+.|.+++|+|++.   . |++++.+|.+.+|++..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~-l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGE-VLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCE-EEEEETTTEEEEEESCC
T ss_pred             ccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcce-EEEEcCCceEEEEeccC
Confidence            877321       01223456788999999999998   6 44566789999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7e-33  Score=268.56  Aligned_cols=285  Identities=16%  Similarity=0.199  Sum_probs=227.2

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEe
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~la~g  215 (502)
                      .|.+.|.+++|+|++++|++|+.++   .+.||.+.....   ...............|++|       +|+++ +|++|
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~---~v~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~~~   75 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDG---SLTVYKFDIQAK---NVDLLQSLRYKHPLLCCNF-------IDNTDLQIYVG   75 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTS---EEEEEEEETTTT---EEEEEEEEECSSCEEEEEE-------EESSSEEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCC---eEEEEEeCCCCc---cccceeeeecCCceEEEEE-------CCCCCcEEEEE
Confidence            5888999999999999999999876   667777765541   1111111122344578888       67899 99999


Q ss_pred             cCCCcEEEeeC-CCCCCcCcceecCCcchhhhhhccccCCcccccccccC--cccceeeEEeccCCCcEEEEEecCCcEE
Q 010748          216 SMEPAIEIWDL-DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS--HTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       216 ~~dg~I~iwdl-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~l~sgs~dg~v~  292 (502)
                      +.+|.|++|++ .....                            ..+.+  |...|.+++|+|  +.+|++|+.|+.|+
T Consensus        76 ~~dg~i~~wd~~~~~~~----------------------------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~  125 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF----------------------------QALTNNEANLGICRICKYG--DDKLIAASWDGLIE  125 (342)
T ss_dssp             ETTSCEEEECSSSSSSE----------------------------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEE
T ss_pred             cCCCeEEEEEeccCCce----------------------------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEE
Confidence            99999999999 64321                            23446  999999999999  45999999999999


Q ss_pred             EEeCCC---------CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCc--cceEeecCCeeEEEe
Q 010748          293 IWDVAA---------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHS--GFKWAVAADVESLAW  360 (502)
Q Consensus       293 vwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~--~~~~~~~~~v~~v~~  360 (502)
                      +||+.+         ++++..+. |...|.+++|+|++   +++++.++.|++||+++ ....  .....+...+.+++|
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~  201 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL  201 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred             EEcccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence            999988         77777777 89999999999865   99999999999999998 5432  223356778999999


Q ss_pred             CC-CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC---------CeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          361 DP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---------AVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       361 ~~-~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      +| ++. ++++++.+|.|++|+++......   .......+..|..         .|++++|+|++ .+|++++.||.|+
T Consensus       202 ~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~  276 (342)
T 1yfq_A          202 LPKEQE-GYACSSIDGRVAVEFFDDQGDDY---NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIIS  276 (342)
T ss_dssp             CSGGGC-EEEEEETTSEEEEEECCTTCCST---TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEE
T ss_pred             CCCCCC-EEEEEecCCcEEEEEEcCCCccc---ccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEE
Confidence            99 765 89999999999999998651000   0155667777755         99999999998 8999999999999


Q ss_pred             EEECCCCCeeEEEEecCC-CCcEEEEEEcCCCCcEEEEEeCCCc-EEEEE
Q 010748          431 LWDLSNNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGSKGK-LEIWD  478 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~-~~~v~~~~~spd~~~ll~sg~~dg~-i~vwd  478 (502)
                      +||+.+++  .+..+..| .++|.+++  |++. +|++|+.||. .+.|.
T Consensus       277 vwd~~~~~--~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          277 CWNLQTRK--KIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEETTTTE--EEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSS
T ss_pred             EEcCccHh--HhhhhhcccCCCceEec--CCCC-eEEEEecCCccccccc
Confidence            99999887  56778888 99999999  9998 5999999998 44443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.8e-32  Score=257.93  Aligned_cols=280  Identities=20%  Similarity=0.349  Sum_probs=217.4

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      .+.|.|+|++ +||+|. ++   .++||..+.+..  ..+...|  .......|++|       +|++++||+|+.||.|
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~---tV~iWd~~tg~~--~~~~~~~--~~~~~V~~v~~-------~~~~~~l~sgs~Dg~v   91 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DN---SVYLWSASSGDI--LQLLQME--QPGEYISSVAW-------IKEGNYLAVGTSSAEV   91 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TT---EEEEEETTTCCE--EEEEECC--STTCCEEEEEE-------CTTSSEEEEEETTSEE
T ss_pred             ceEEEECCCC-EEEEEe-CC---EEEEEECCCCCE--EEEEEec--CCCCeEEEEEE-------CCCCCEEEEEECCCcE
Confidence            5779999886 676664 54   455555443321  1111111  11223367777       7999999999999999


Q ss_pred             EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-e
Q 010748          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-K  300 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~-~  300 (502)
                      +||++.++..                           ...+.+|...+.++++.+   .+|++|+.++.+++|+.... .
T Consensus        92 ~iw~~~~~~~---------------------------~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~  141 (318)
T 4ggc_A           92 QLWDVQQQKR---------------------------LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH  141 (318)
T ss_dssp             EEEETTTTEE---------------------------EEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC
T ss_pred             EEeecCCcee---------------------------EEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCce
Confidence            9999976432                           223457888888877764   48999999999999998876 4


Q ss_pred             eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc----ceEeecCCeeEEEeCCCCCCEEE--EEeCC
Q 010748          301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG----FKWAVAADVESLAWDPHAEHSFV--VSLED  374 (502)
Q Consensus       301 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~v~~v~~~~~~~~~~~--~~~~d  374 (502)
                      .+..+.+|...+.++.|++.+ .+|++++.||+|++||+++++...    ....+.+.|.++.++|.+..++.  +++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          142 HVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             eEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence            567788999999999999999 899999999999999998765432    23346678999999998877654  45678


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCeeEEEEecCCCCcE
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      +.|++||.+..          .......+...+..+.|+|.+ ..+++++  .|+.|++||+.+++  ++..+.+|.+.|
T Consensus       221 ~~i~lwd~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~gH~~~V  287 (318)
T 4ggc_A          221 RHIRIWNVCSG----------ACLSAVDAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRV  287 (318)
T ss_dssp             CEEEEEETTTC----------CEEEEEECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCE
T ss_pred             CEEEEEecccc----------cccccccceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCc--EEEEEcCCCCCE
Confidence            99999999875          234445677889999999998 5555543  79999999999988  677888999999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      ++++|+|++++ |++|+.||+|+|||+...
T Consensus       288 ~~l~~spdg~~-l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          288 LSLTMSPDGAT-VASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEECTTSSC-EEEEETTTEEEEECCSCC
T ss_pred             EEEEEcCCCCE-EEEEecCCeEEEEECCCC
Confidence            99999999995 999999999999999764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.9e-33  Score=281.27  Aligned_cols=257  Identities=16%  Similarity=0.202  Sum_probs=200.0

Q ss_pred             cceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee
Q 010748          193 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      ..|++|       +| ++++||+|+.||.|+|||+.+.+.                         .....+.+|...|++
T Consensus       122 V~~l~~-------~P~~~~~lasGs~dg~i~lWd~~~~~~-------------------------~~~~~~~gH~~~V~~  169 (435)
T 4e54_B          122 ATSLAW-------HPTHPSTVAVGSKGGDIMLWNFGIKDK-------------------------PTFIKGIGAGGSITG  169 (435)
T ss_dssp             EEEEEE-------CSSCTTCEEEEETTSCEEEECSSCCSC-------------------------CEEECCCSSSCCCCE
T ss_pred             EEEEEE-------eCCCCCEEEEEeCCCEEEEEECCCCCc-------------------------eeEEEccCCCCCEEE
Confidence            478888       66 578999999999999999975332                         122234589999999


Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (502)
                      |+|+|.++++|+||+.||+|++||+.++........  +...+.+++|+|++ .+|++|+.||.|++||++... .....
T Consensus       170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-~~~~~  247 (435)
T 4e54_B          170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-LWNLR  247 (435)
T ss_dssp             EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-CCCSB
T ss_pred             EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-eEEEe
Confidence            999996578999999999999999987655443333  34567899999999 899999999999999998654 33456


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      .|...|.+++|+|++..++++|+.|+.|++||+++...      ...+....+|...|++++|+|++ .+|++++.||.|
T Consensus       248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~------~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i  320 (435)
T 4e54_B          248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG------KASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEI  320 (435)
T ss_dssp             CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS------SSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCE
T ss_pred             cccceEEeeeecCCCceEEEEecCcceeeEEecccccc------cceEEEeeeccccccceeECCCC-CeeEEEcCCCEE
Confidence            78899999999999888999999999999999998632      12334456799999999999998 899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCC------cEEEEEEcCCCCcEEEEEe------------CCCcEEEEECCCCccccccccC
Q 010748          430 KLWDLSNNQPSCIASRNPKAG------AVFSVAFSEDSPFVLAIGG------------SKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~------~v~~~~~spd~~~ll~sg~------------~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +|||+.++..  ...+..|..      .+..+.|+|++.+ +++++            .++.|++||+.+++.+...+.+
T Consensus       321 ~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~  397 (435)
T 4e54_B          321 RVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNL-IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP  397 (435)
T ss_dssp             EEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSC-EEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred             EEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCE-EEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence            9999998763  333333221      2334566666653 33332            3467999999999988877655


Q ss_pred             CC
Q 010748          492 YS  493 (502)
Q Consensus       492 ~~  493 (502)
                      +.
T Consensus       398 ~~  399 (435)
T 4e54_B          398 ES  399 (435)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-32  Score=261.41  Aligned_cols=255  Identities=16%  Similarity=0.221  Sum_probs=197.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC--CCCEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~la  213 (502)
                      ..|...|.+++|+|++++||+|+.++   .++||.+..........+..|..    ...+++|       ++  ++++||
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~---~v~iw~~~~~~~~~~~~l~gH~~----~V~~v~~-------s~~~~g~~l~   71 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDK---TIKIFEVEGETHKLIDTLTGHEG----PVWRVDW-------AHPKFGTILA   71 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTS---CEEEEEBCSSCBCCCEEECCCSS----CEEEEEE-------CCGGGCSEEE
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCC---EEEEEecCCCCcEEEEEEccccC----CeEEEEe-------cCCCcCCEEE
Confidence            35888999999999999999999887   56777765432211122233332    2367777       43  489999


Q ss_pred             EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCCcEE
Q 010748          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVK  292 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v~  292 (502)
                      +|+.|++|+|||+..+..                         .....+.+|...|.+++|+|+. +.+|++|+.|++|+
T Consensus        72 s~s~D~~v~iWd~~~~~~-------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~  126 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRW-------------------------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS  126 (297)
T ss_dssp             EEETTTEEEEEEBSSSCB-------------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EEcCCCEEEEEEcCCCce-------------------------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence            999999999999975321                         1122345799999999999972 46999999999999


Q ss_pred             EEeCCCCe--eeEeeccCCCCeEEEEEcCCC------------CcEEEEEeCCCcEEEEecCCCCC----ccceEeecCC
Q 010748          293 IWDVAAGK--CNLTLEHHTDKVQAVAWNHHS------------PQILLSGSFDRSVVMKDARISTH----SGFKWAVAAD  354 (502)
Q Consensus       293 vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~------------~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~  354 (502)
                      +||+.++.  ....+.+|...|.+++|+|.+            .++|++|+.|++|++||+++...    ...+..|...
T Consensus       127 ~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~  206 (297)
T 2pm7_B          127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (297)
T ss_dssp             EEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             EEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc
Confidence            99998763  245678899999999999973            26899999999999999987652    2234467889


Q ss_pred             eeEEEeCCCC--CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE--eccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          355 VESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       355 v~~v~~~~~~--~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      |.+++|+|++  ..++++++.|++|++||++....      ......+  ..|...|.+++|+|++ .+|++++.|+.|+
T Consensus       207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~  279 (297)
T 2pm7_B          207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG------PWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVT  279 (297)
T ss_dssp             EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS------CCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEE
T ss_pred             eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC------ccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEE
Confidence            9999999985  46899999999999999986421      0111222  4678899999999998 8999999999999


Q ss_pred             EEECCC
Q 010748          431 LWDLSN  436 (502)
Q Consensus       431 vwd~~~  436 (502)
                      ||+...
T Consensus       280 lw~~~~  285 (297)
T 2pm7_B          280 LWKENL  285 (297)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            999764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-32  Score=291.85  Aligned_cols=250  Identities=22%  Similarity=0.314  Sum_probs=207.9

Q ss_pred             ceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          194 LCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .|++|       +++ +++|++|+.|++|+||++.......                      ......+.+|...|.++
T Consensus       386 ~~v~~-------~~~~~~~l~s~s~D~~i~~W~~~~~~~~~----------------------~~~~~~~~~h~~~v~~v  436 (694)
T 3dm0_A          386 TAIAT-------PIDNADIIVSASRDKSIILWKLTKDDKAY----------------------GVAQRRLTGHSHFVEDV  436 (694)
T ss_dssp             EEEEC-------CTTCCSEEEEEETTSEEEEEECCCSTTCS----------------------CEEEEEEECCSSCEEEE
T ss_pred             EEEEe-------cCCCCCEEEEEeCCCcEEEEEccCCCccc----------------------ccccceecCCCCcEEEE
Confidence            57766       554 6899999999999999997532211                      12233456899999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc---eE
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KW  349 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~  349 (502)
                      +|+|+ +.+|++|+.||+|+|||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||+........   ..
T Consensus       437 ~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  514 (694)
T 3dm0_A          437 VLSSD-GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGE  514 (694)
T ss_dssp             EECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred             EECCC-CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence            99999 5699999999999999999999999999999999999999999 8899999999999999865432211   12


Q ss_pred             eecCCeeEEEeCCCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          350 AVAADVESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~-~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      .|...|.+++|+|++. ..+++++.||.|++||+++.         .....+.+|...|++++|+|++ .+|++|+.||.
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~  584 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---------KLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGV  584 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSB
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCe
Confidence            4677899999999763 47999999999999999976         6778889999999999999998 99999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |++||+.+++  ++..+. +...|.+++|+|++. +|+++ .++.|+|||+.++..+....
T Consensus       585 i~iwd~~~~~--~~~~~~-~~~~v~~~~~sp~~~-~l~~~-~~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          585 VLLWDLAEGK--KLYSLE-ANSVIHALCFSPNRY-WLCAA-TEHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             CEEEETTTTE--EEECCB-CSSCEEEEEECSSSS-EEEEE-ETTEEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCc--eEEEec-CCCcEEEEEEcCCCc-EEEEE-cCCCEEEEECCCCCChhhhc
Confidence            9999999887  445554 346799999999987 46554 56679999999988776543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.6e-32  Score=272.81  Aligned_cols=296  Identities=18%  Similarity=0.273  Sum_probs=224.7

Q ss_pred             ccccccccCCCceEEE-EEecCCcceeEEEEEecCCCC--CCCeeeeeccccCCCcceeeeecCCCCCCC-CCCEEEEec
Q 010748          141 DLEDMTINPNDAVIVC-ARNEDDVSHLEVYILEESDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAVGS  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~-~~~~~~~~~l~v~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~la~g~  216 (502)
                      ....+.++|+...+++ ++.++   .+.||.++.....  ....+..|..    ...+++|       +| ++++||+|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g---~i~v~~~~~~~~~~~~~~~~~~h~~----~V~~~~~-------~p~~~~~l~s~s  101 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGG---AFLVLPLGKTGRVDKNVPLVCGHTA----PVLDIAW-------CPHNDNVIASGS  101 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSC---CEEEEETTCCEECCTTCCCBCCCSS----CEEEEEE-------CTTCTTEEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCC---EEEEEECccCCCCCCCCceEecCCC----CEEEEEe-------CCCCCCEEEEEe
Confidence            4556888888876665 45554   5666666433210  1112222322    2368887       67 899999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .||.|+||++........                    .......+.+|...|.+++|+|++.++|++|+.||+|++||+
T Consensus       102 ~dg~v~vw~~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  161 (402)
T 2aq5_A          102 EDCTVMVWEIPDGGLVLP--------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV  161 (402)
T ss_dssp             TTSEEEEEECCTTCCSSC--------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred             CCCeEEEEEccCCCCccc--------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence            999999999986532211                    012334556899999999999996679999999999999999


Q ss_pred             CCCeeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-EeecCC-eeEEEeCCCCCCEEEEE-
Q 010748          297 AAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAAD-VESLAWDPHAEHSFVVS-  371 (502)
Q Consensus       297 ~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~v~~~~~~~~~~~~~-  371 (502)
                      .+++++..+  ..|...|++++|+|++ .+|++++.||.|++||+++....... ..+.+. +.++.|+|++. ++++| 
T Consensus       162 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~  239 (402)
T 2aq5_A          162 GTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGF  239 (402)
T ss_dssp             TTTEEEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEE
T ss_pred             CCCCccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEec
Confidence            999999999  8899999999999998 89999999999999999987766544 345554 89999999754 78888 


Q ss_pred             --eCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCCe-eEEEEec
Q 010748          372 --LEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQP-SCIASRN  446 (502)
Q Consensus       372 --~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l-~t~s~dg~i~vwd~~~~~~-~~~~~~~  446 (502)
                        +.++.|++||+++..        .++... ..|...+.+++|+|++ .+| ++|+.||.|++|++.++++ .......
T Consensus       240 ~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          240 SRMSERQVALWDTKHLE--------EPLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             CTTCCEEEEEEETTBCS--------SCSEEEECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred             cCCCCceEEEEcCcccc--------CCceEEeccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence              689999999999862        333333 3577889999999998 566 4666899999999998873 2222222


Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      .|.++|.+++|+|++.+ ++  +.++.+++|++.++..
T Consensus       311 ~~~~~v~~~~~sp~~~~-~~--s~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          311 SSKESQRGMGYMPKRGL-EV--NKCEIARFYKLHERKC  345 (402)
T ss_dssp             CCSSCCSEEEECCGGGS-CG--GGTEEEEEEEEETTEE
T ss_pred             ccCCcccceEEeccccc-ce--ecceeEEEEEcCCCcE
Confidence            36789999999999985 55  3566999999988654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.8e-32  Score=276.26  Aligned_cols=288  Identities=16%  Similarity=0.246  Sum_probs=226.3

Q ss_pred             CCcccc-ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          137 EDSEDL-EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v-~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      .|...+ .++.  +++++|++|+.++   .+++|.......  ...+..|    .....++.|       ++++ +|++|
T Consensus       119 ~h~~~v~~~~~--~~~~~l~sgs~dg---~i~vwd~~~~~~--~~~~~~h----~~~V~~l~~-------~~~~-~l~s~  179 (464)
T 3v7d_B          119 GHMTSVITCLQ--FEDNYVITGADDK---MIRVYDSINKKF--LLQLSGH----DGGVWALKY-------AHGG-ILVSG  179 (464)
T ss_dssp             CCSSSCEEEEE--EETTEEEEEETTS---CEEEEETTTTEE--EEEECCC----SSCEEEEEE-------CSTT-EEEEE
T ss_pred             CCCCCcEEEEE--ECCCEEEEEcCCC---cEEEEECCCCcE--EEEEeCC----CcCEEEEEE-------cCCC-EEEEE
Confidence            355554 5444  4678999999887   455555433321  1111223    233467777       5666 99999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEEEecCCcEEEE
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASADKQVKIW  294 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs~dg~v~vw  294 (502)
                      +.||.|++||+.++.                           ....+.+|...|.+++|++. .+.+|++|+.||+|++|
T Consensus       180 s~dg~i~vwd~~~~~---------------------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          180 STDRTVRVWDIKKGC---------------------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             ETTSCEEEEETTTTE---------------------------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             eCCCCEEEEECCCCc---------------------------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            999999999997532                           22345579999999999952 25799999999999999


Q ss_pred             eCCCCee-----------------------eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee
Q 010748          295 DVAAGKC-----------------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       295 d~~~~~~-----------------------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  351 (502)
                      |+.++..                       +..+.+|...|.++.  +++ .+|++|+.||.|++||+++.+.......|
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  309 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGH  309 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            9987652                       556788999998885  445 78999999999999999988877666678


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      ...|.+++|+|++. .+++|+.||.|++||++++         .++..+.+|...|.+++|++   .+|++++.||.|++
T Consensus       310 ~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~v  376 (464)
T 3v7d_B          310 TDRIYSTIYDHERK-RCISASMDTTIRIWDLENG---------ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRG  376 (464)
T ss_dssp             SSCEEEEEEETTTT-EEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEE
T ss_pred             CCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEE
Confidence            89999999999765 8999999999999999986         78889999999999999984   79999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ||+.+...  .... .+...+..++|+|++. +|++|+ +|.|++||+.+++.+.+.+..
T Consensus       377 wd~~~~~~--~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~~~~  431 (464)
T 3v7d_B          377 WDANDYSR--KFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHANILK  431 (464)
T ss_dssp             EETTTCCE--EEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred             EECCCCce--eeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehhhcc
Confidence            99998763  3332 2556678889999998 577777 899999999999998764433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.2e-32  Score=309.80  Aligned_cols=295  Identities=17%  Similarity=0.270  Sum_probs=236.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++|+.++   .+.||.......  ......|    .....|++|       +|++++||+|
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~---~i~vw~~~~~~~--~~~~~~h----~~~v~~~~~-------s~~~~~l~s~  675 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADK---TLQVFKAETGEK--LLDIKAH----EDEVLCCAF-------SSDDSYIATC  675 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCE--EEEECCC----SSCEEEEEE-------CTTSSEEEEE
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCC---eEEEEECCCCCE--EEEeccC----CCCEEEEEE-------ecCCCEEEEE
Confidence            35889999999999999999999887   456665544321  1111222    223367777       7999999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEEEecCCcEEEE
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASADKQVKIW  294 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs~dg~v~vw  294 (502)
                      +.||.|+|||+.++..                           ...+.+|...|.+++|+|+ ...++++|+.||+|++|
T Consensus       676 ~~d~~v~vwd~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          676 SADKKVKIWDSATGKL---------------------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             ETTSEEEEEETTTCCE---------------------------EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred             eCCCeEEEEECCCCce---------------------------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence            9999999999976432                           2234579999999999995 25589999999999999


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc---------------------------
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---------------------------  347 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---------------------------  347 (502)
                      |+.+++++..+.+|...|++++|+|++ .+|++++.||+|++||+++......                           
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  807 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS  807 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC
Confidence            999999999999999999999999999 8999999999999999876532110                           


Q ss_pred             ----------------------------eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE
Q 010748          348 ----------------------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       348 ----------------------------~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                                                  ...+...+.+++|+|++. ++++++.+|.|++|++.+.         ..+..
T Consensus       808 ~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~---------~~~~~  877 (1249)
T 3sfz_A          808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSR---------LKVAD  877 (1249)
T ss_dssp             TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTT---------EEEEE
T ss_pred             CCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC---------ceeee
Confidence                                        013456788999999765 8999999999999999986         67788


Q ss_pred             EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC------------------------------------------
Q 010748          400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------------------------------------------  437 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~------------------------------------------  437 (502)
                      +.+|...|++++|+|++ .+|++++.||.|++|++...                                          
T Consensus       878 ~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  956 (1249)
T 3sfz_A          878 CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI  956 (1249)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred             cCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence            88999999999999987 88999999999999985320                                          


Q ss_pred             -----------------------------------CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          438 -----------------------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       438 -----------------------------------~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                                                         .......+.+|.+.|++++|+|++++ |++++.||.|++|++.++
T Consensus       957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A          957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT-LISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp             EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSC-EEEECSSSBEEEEETTTT
T ss_pred             EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCC
Confidence                                               00123345578889999999999995 899999999999999988


Q ss_pred             cccc
Q 010748          483 AGIS  486 (502)
Q Consensus       483 ~~~~  486 (502)
                      ..+.
T Consensus      1036 ~~~~ 1039 (1249)
T 3sfz_A         1036 DYVF 1039 (1249)
T ss_dssp             EEEC
T ss_pred             ceEE
Confidence            7653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-33  Score=286.10  Aligned_cols=238  Identities=12%  Similarity=0.135  Sum_probs=185.1

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-----CcE
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNI  281 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----~~~  281 (502)
                      |++++||+|+.|++|+||++.+.....                       .....+.+|.+.|++++|+|++     +.+
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~-----------------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~  227 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHC-----------------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGC  227 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCE-----------------------EEEEEEEECCCSEEEEEECSSCCCSSSSCE
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCc-----------------------eEEEEEEecCCcEEEEEECCCCCCCCCCce
Confidence            444555667788999999986533211                       0111234678899999999962     469


Q ss_pred             EEEEecCCcEEEEeCCCCee-----------eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceE
Q 010748          282 LASASADKQVKIWDVAAGKC-----------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKW  349 (502)
Q Consensus       282 l~sgs~dg~v~vwd~~~~~~-----------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~  349 (502)
                      ||+|+.||+|+|||+.+++.           ...+.+|...|++++|++.+  .|++|+.||+|++||++++.... ...
T Consensus       228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~  305 (524)
T 2j04_B          228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQ  305 (524)
T ss_dssp             EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEE
T ss_pred             EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEee
Confidence            99999999999999987642           24678899999999999854  79999999999999999765433 355


Q ss_pred             eecCCeeEE--EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC--CeeEEEEcCCCCCEEEEEeC
Q 010748          350 AVAADVESL--AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       350 ~~~~~v~~v--~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~  425 (502)
                      .|...|.++  +|+|++..+|++++.||+|++||+++.         .+...+.+|..  .|.+++|+|++ ..|++++.
T Consensus       306 ~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~---------~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~  375 (524)
T 2j04_B          306 VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI---------ATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDG  375 (524)
T ss_dssp             CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH---------HHHCEEEEECSCCSCCCEEEETTT-TEEEEECS
T ss_pred             cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC---------CcccccccccccCcccceEeCCCc-CeEEEeCC
Confidence            788999999  567765468999999999999999976         55666666654  58899999997 78999999


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      |++|++||++++.  ++..+.+|.+.|++++|+|++++ |++|+.||+|+|||+..+
T Consensus       376 d~tv~lwd~~~~~--~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          376 ASSLRAVPSRAAF--AVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARR  429 (524)
T ss_dssp             SSEEEEEETTCTT--CCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSS
T ss_pred             CCcEEEEECcccc--cceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHh
Confidence            9999999999877  44556679999999999999995 899999999999998654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.1e-32  Score=274.96  Aligned_cols=280  Identities=21%  Similarity=0.382  Sum_probs=219.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.+  ++++|++|+.++   .+.+|.......  ...+..|.    ....|+.|         ++++|++|+
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg---~i~iwd~~~~~~--~~~~~~h~----~~v~~l~~---------~~~~l~sg~  190 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDN---TIKIWDKNTLEC--KRILTGHT----GSVLCLQY---------DERVIITGS  190 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSS---CEEEEESSSCCE--EEEECCCS----SCEEEEEC---------CSSEEEEEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCC---eEEEEeCCCCeE--EEEEcCCC----CcEEEEEE---------CCCEEEEEc
Confidence            45567777766  899999999887   456665443221  11122232    22356654         688999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .||.|++||+.++..                           ...+.+|...|.+++|++.   +|++|+.||+|++||+
T Consensus       191 ~dg~i~vwd~~~~~~---------------------------~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          191 SDSTVRVWDVNTGEM---------------------------LNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             TTSCEEEEESSSCCE---------------------------EEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEEC
T ss_pred             CCCeEEEEECCCCcE---------------------------EEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeC
Confidence            999999999976432                           2234579999999999754   8999999999999999


Q ss_pred             CCCeee---EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          297 AAGKCN---LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       297 ~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      .+++..   ..+.+|...|.+++|  ++ .+|++|+.||.|++||+++.........+...|.++.|++   .++++|+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~  314 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSS  314 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEET
T ss_pred             CCCCCceeeeEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC---CEEEEEeC
Confidence            988655   677889999999999  44 7899999999999999999887776777889999999953   48999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------eEEEEec
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRN  446 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-------~~~~~~~  446 (502)
                      ||.|++||++++         .++..+.+|...|.+++|+  + .+|++|+.||.|++||+.++..       .++..+.
T Consensus       315 dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  382 (435)
T 1p22_A          315 DNTIRLWDIECG---------ACLRVLEGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV  382 (435)
T ss_dssp             TSCEEEEETTTC---------CEEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             CCeEEEEECCCC---------CEEEEEeCCcCcEEEEEec--C-CEEEEEeCCCcEEEEECCCCCCccccccchheeecc
Confidence            999999999986         7788899999999999993  3 8999999999999999865431       1577788


Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +|.+.|++++|  ++. .|++|+.||.|++||+.+......
T Consensus       383 ~h~~~v~~l~~--~~~-~l~s~s~Dg~i~iwd~~~~~~~~~  420 (435)
T 1p22_A          383 EHSGRVFRLQF--DEF-QIVSSSHDDTILIWDFLNDPAAQA  420 (435)
T ss_dssp             CCSSCCCCEEE--CSS-CEEECCSSSEEEEEC---------
T ss_pred             CCCCCeEEEEe--CCC-EEEEEeCCCEEEEEECCCCCCccc
Confidence            99999999999  566 489999999999999988766543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-33  Score=276.44  Aligned_cols=249  Identities=14%  Similarity=0.167  Sum_probs=192.4

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|++|       +|++++||+|+.|+.|+||++.+..                         ......+.+|...|+++
T Consensus        14 v~~~~~-------s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~~~v~~~   61 (377)
T 3dwl_C           14 SYEHAF-------NSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHDKIVTCV   61 (377)
T ss_dssp             CSCCEE-------CSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCSSCEEEE
T ss_pred             EEEEEE-------CCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCCceEEEE
Confidence            367777       7999999999999999999987421                         02233456899999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCe---eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---cc
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SG  346 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~  346 (502)
                      +|+|+ +.+|++|+.|++|++||+.+++   +...+..|...|.+++|+|++ .+|++++.|+.|++||+++...   ..
T Consensus        62 ~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           62 DWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             EECTT-TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCE
T ss_pred             EEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeee
Confidence            99999 5699999999999999999887   677788899999999999998 8999999999999999998763   33


Q ss_pred             ceEe-ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC---------CCCccceEEeccCCCeeEEEEcCCC
Q 010748          347 FKWA-VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---------TSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       347 ~~~~-~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~---------~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      .... |...|.+++|+|++. ++++++.||.|++||++........         ....++..+ .|...|++++|+|++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~  217 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG  217 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred             EeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence            3334 788999999999765 8999999999999999643211100         002334444 899999999999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCe--eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          417 PNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                       .+|++++.||.|++||+.+++.  ..+..+..|..+|.+++|+|++. +|++|+.++.+ +|+..
T Consensus       218 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          218 -NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             -SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCC
T ss_pred             -CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeC
Confidence             8999999999999999998874  12566778999999999999998 47777666555 77665

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.8e-32  Score=271.05  Aligned_cols=245  Identities=22%  Similarity=0.303  Sum_probs=201.8

Q ss_pred             CCCCC-EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|+.. ++++|+.+|.|+||++......                       ......+.+|...|++++|+|.++.+|++
T Consensus        43 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s   99 (402)
T 2aq5_A           43 NPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHTAPVLDIAWCPHNDNVIAS   99 (402)
T ss_dssp             CSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred             CCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence            55543 4445789999999999642111                       12223456899999999999933779999


Q ss_pred             EecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce--EeecCCe
Q 010748          285 ASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADV  355 (502)
Q Consensus       285 gs~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v  355 (502)
                      |+.||+|+||++.++       +++..+.+|...|.+++|+|++.++|++++.||.|++||+++++.....  ..|...|
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence            999999999999988       6678889999999999999998679999999999999999988766544  4588899


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCC-eeEEEEcCCCCCEEEEE---eCCCcEE
Q 010748          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKA-VCTISYNPLVPNLLATG---STDKMVK  430 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~-v~~l~~sp~~~~~l~t~---s~dg~i~  430 (502)
                      .+++|+|++. ++++++.||.|++||++++         ..+..+ ..|.+. +.++.|+|++ .+|++|   +.|+.|+
T Consensus       180 ~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          180 YSVDWSRDGA-LICTSCRDKRVRVIEPRKG---------TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVA  248 (402)
T ss_dssp             EEEEECTTSS-CEEEEETTSEEEEEETTTT---------EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEE
T ss_pred             EEEEECCCCC-EEEEEecCCcEEEEeCCCC---------ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEE
Confidence            9999999765 7999999999999999986         666777 688776 8999999987 889998   7899999


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      +||+++...........+...+.+++|+|++.+++++|+.||.|++|++.+++.
T Consensus       249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            999998664222333356678999999999997556777899999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.9e-32  Score=265.67  Aligned_cols=248  Identities=17%  Similarity=0.224  Sum_probs=205.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.++.|+||++....                         ......+.+|...|.+++
T Consensus        12 ~~~~~-------s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~~~v~~~~   59 (372)
T 1k8k_C           12 SCHAW-------NKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHNGQVTGVD   59 (372)
T ss_dssp             CEEEE-------CTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCCCcccEEE
Confidence            67777       7999999999999999999986432                         112334557999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEe--eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc----cc
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GF  347 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~  347 (502)
                      |+|+ +.+|++|+.||.|++||+.+++....  +..|...|.+++|+|++ .+|++++.++.|++||++.....    ..
T Consensus        60 ~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           60 WAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             EETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence            9998 56999999999999999998875444  46789999999999998 89999999999999999987642    11


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC---------CCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      ...+...|.+++|+|++. ++++++.+|.|++||++.......         ......+..+..|...|++++|+|++ .
T Consensus       138 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~  215 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-S  215 (372)
T ss_dssp             CTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-S
T ss_pred             ecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-C
Confidence            234578899999999765 899999999999999763211100         01135677778899999999999998 8


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +|++++.|+.|++||+++++  ++..+..|..+|.+++|+|++. +|++| .++.|++|++.+
T Consensus       216 ~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKKM--AVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred             EEEEEeCCCEEEEEECCCCc--eeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence            99999999999999999887  5667778888999999999998 46666 899999999988

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.9e-32  Score=267.75  Aligned_cols=250  Identities=15%  Similarity=0.236  Sum_probs=209.7

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|  ++|++|+.||.|+||++.......+                     ......+.+|...|++++
T Consensus        20 ~~~~~-------~~--~~l~s~~~dg~i~iw~~~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~   69 (397)
T 1sq9_A           20 FSVSA-------CN--SFTVSCSGDGYLKVWDNKLLDNENP---------------------KDKSYSHFVHKSGLHHVD   69 (397)
T ss_dssp             EEEEE-------CS--SEEEEEETTSEEEEEESBCCTTCCG---------------------GGGEEEEECCTTCEEEEE
T ss_pred             EEEEe-------cC--CeEEEEcCCCEEEEEECCCcccccC---------------------CCcceEEecCCCcEEEEE
Confidence            68887       45  8999999999999999976442211                     123334558999999999


Q ss_pred             eccC---CC---cEEEEEecCCcEEEEeCCCCee-----eEeeccC-----CCCeEEEEEc----CCCCcE-EEEEeCCC
Q 010748          274 WNKE---FR---NILASASADKQVKIWDVAAGKC-----NLTLEHH-----TDKVQAVAWN----HHSPQI-LLSGSFDR  332 (502)
Q Consensus       274 ~~~~---~~---~~l~sgs~dg~v~vwd~~~~~~-----~~~~~~h-----~~~v~~l~~~----~~~~~~-l~s~s~dg  332 (502)
                      |+|+   .+   .+|++|+.||.|++|++.+++.     +..+..|     ...|.+++|+    |++ .+ |++++.||
T Consensus        70 ~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg  148 (397)
T 1sq9_A           70 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKG  148 (397)
T ss_dssp             EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTS
T ss_pred             EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCC
Confidence            9998   23   5899999999999999998887     8888888     5999999999    988 77 99999999


Q ss_pred             cEEEEecCC------CCCcc-----ceE-------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 010748          333 SVVMKDARI------STHSG-----FKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ  394 (502)
Q Consensus       333 ~i~iwd~~~------~~~~~-----~~~-------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~  394 (502)
                      .|++||++.      .....     ...       .+...+.+++|+|++  ++++++.+|.|++||+++.         
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~---------  217 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL---------  217 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT---------
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC---------
Confidence            999999998      55443     332       257789999999986  8999999999999999986         


Q ss_pred             ccceEEec---c---CCCeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCeeEEEEecC-------------CCCcE
Q 010748          395 QSSFTLHA---H---DKAVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNP-------------KAGAV  452 (502)
Q Consensus       395 ~~~~~~~~---h---~~~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~-------------~~~~v  452 (502)
                      .++..+..   |   ...|.+++|+|++ .+|++++.|   +.|++||+.+++  .+..+..             |...|
T Consensus       218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v  294 (397)
T 1sq9_A          218 RPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWV  294 (397)
T ss_dssp             EEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCE
T ss_pred             ceeEEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcE
Confidence            77788888   9   9999999999997 899999999   999999999887  4556666             88999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .+++|+|++. +|++++.||.|+|||+.+++.+....
T Consensus       295 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          295 MSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999999999 59999999999999999998877665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3e-31  Score=267.34  Aligned_cols=280  Identities=21%  Similarity=0.366  Sum_probs=226.1

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+.+.. ++++++++|++|+.++   .++||.+.....  ...+..|.    ....++.|         ++++|++|+
T Consensus       116 ~h~~~v~~-~~~~~g~~l~sg~~dg---~i~vwd~~~~~~--~~~~~~h~----~~v~~~~~---------~~~~l~s~~  176 (445)
T 2ovr_B          116 GHDDHVIT-CLQFCGNRIVSGSDDN---TLKVWSAVTGKC--LRTLVGHT----GGVWSSQM---------RDNIIISGS  176 (445)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEETTS---CEEEEETTTCCE--EEECCCCS----SCEEEEEE---------ETTEEEEEE
T ss_pred             ccCCCcEE-EEEEcCCEEEEEECCC---cEEEEECCCCcE--EEEEcCCC----CCEEEEEe---------cCCEEEEEe
Confidence            36655433 4667799999999887   456665543321  11112232    22356665         377999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .||.|++||+.++..                           ...+.+|...|.+++|++.   .|++|+.||+|++||+
T Consensus       177 ~dg~i~vwd~~~~~~---------------------------~~~~~~h~~~v~~~~~~~~---~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          177 TDRTLKVWNAETGEC---------------------------IHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDI  226 (445)
T ss_dssp             TTSCEEEEETTTTEE---------------------------EEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEES
T ss_pred             CCCeEEEEECCcCcE---------------------------EEEECCCCCcEEEEEecCC---EEEEEeCCCEEEEEEC
Confidence            999999999975322                           2234579999999999743   7999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      .+++++..+.+|...|.++.|  ++ .++++|+.||.|++||+++.........+...|.++.|+   ...+++++.||.
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~  300 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTS  300 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC---SSEEEEEETTSC
T ss_pred             CCCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC---CCEEEEEeCCCe
Confidence            999999999999999999999  44 789999999999999999887766666788899999993   348999999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC---CCCcEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP---KAGAVF  453 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~  453 (502)
                      |++||++++         ..+..+.+|...+.++.+++   .+|++|+.||.|++||+.+++  .+..+..   |...|.
T Consensus       301 i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~  366 (445)
T 2ovr_B          301 IRVWDVETG---------NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVT  366 (445)
T ss_dssp             EEEEETTTC---------CEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCC--EEEEECSTTSCSSCEE
T ss_pred             EEEEECCCC---------CEEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCCc--EEEEEccCCCCCCCEE
Confidence            999999987         77888899999999998863   799999999999999999887  4455554   888999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       454 ~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +++|++  . +|++|+.||.|++||+.+++.+...
T Consensus       367 ~~~~~~--~-~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          367 CLQFNK--N-FVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EEEECS--S-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEECC--C-EEEEEeCCCeEEEEECCCCceeeee
Confidence            999964  4 5999999999999999999888766

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.9e-33  Score=265.12  Aligned_cols=256  Identities=19%  Similarity=0.247  Sum_probs=194.4

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC-CCCEEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~la~  214 (502)
                      ..|...|.+++|+|++++||+|+.++   .++||............+..|.    ....+++|.      +| ++++||+
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~---~v~lwd~~~~~~~~~~~l~gH~----~~V~~v~~~------~~~~~~~l~s   76 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDR---SVKIFDVRNGGQILIADLRGHE----GPVWQVAWA------HPMYGNILAS   76 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTT---EEEEEEEETTEEEEEEEEECCS----SCEEEEEEC------CGGGSSCEEE
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCC---eEEEEEecCCCcEEEEEEcCCC----ccEEEEEeC------CCCCCCEEEE
Confidence            45889999999999999999999887   6788877654210001112232    233677773      12 4899999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCCcEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKI  293 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v~v  293 (502)
                      |+.|++|+|||+.++..                         .....+.+|...|++++|+|+. +.+|++|+.|++|++
T Consensus        77 ~s~D~~v~iWd~~~~~~-------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           77 CSYDRKVIIWREENGTW-------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             EETTSCEEEECCSSSCC-------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             EECCCEEEEEECCCCcc-------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            99999999999874321                         1122345799999999999973 468999999999999


Q ss_pred             EeCCCCe---eeEeeccCCCCeEEEEEcCCC----------------CcEEEEEeCCCcEEEEecCCCC---CccceEee
Q 010748          294 WDVAAGK---CNLTLEHHTDKVQAVAWNHHS----------------PQILLSGSFDRSVVMKDARIST---HSGFKWAV  351 (502)
Q Consensus       294 wd~~~~~---~~~~~~~h~~~v~~l~~~~~~----------------~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~  351 (502)
                      ||+..+.   ....+.+|...|.+++|+|+.                ..+|++|+.|++|++||++...   ....+..|
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h  211 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH  211 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred             EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence            9998763   245567899999999999973                2689999999999999997543   23334568


Q ss_pred             cCCeeEEEeCCCC---CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          352 AADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       352 ~~~v~~v~~~~~~---~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ...|.+++|+|++   ..+|++++.||+|++|++......     ......+..|...|.+++|+|++ .+|++++.|+.
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~-----~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~  285 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN-----TWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNK  285 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC-----CCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSC
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc-----chhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCe
Confidence            8899999999975   358999999999999999863110     11234456789999999999998 89999999999


Q ss_pred             EEEEECC
Q 010748          429 VKLWDLS  435 (502)
Q Consensus       429 i~vwd~~  435 (502)
                      |+||+..
T Consensus       286 v~lw~~~  292 (316)
T 3bg1_A          286 VTLWKES  292 (316)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.5e-31  Score=280.11  Aligned_cols=303  Identities=13%  Similarity=0.194  Sum_probs=237.4

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCCeeeeeccccCCC-cceeeeecCCCCCCC--CCCE
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAF-PLCMAWLDCPLKDRE--KGNF  211 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~s~--~~~~  211 (502)
                      .|...|.+++|+|++++|++++ ++   .+.||.+.....  .....+..|.    .. ..|++|       +|  ++++
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~---~v~v~~~~~~~~~~~~~~~~~~h~----~~~v~~~~~-------sp~~~~~~   80 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GK---SAFVRCLDDGDSKVPPVVQFTGHG----SSVVTTVKF-------SPIKGSQY   80 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TT---EEEEEECCSSCCSSCSEEEECTTT----TSCEEEEEE-------CSSTTCCE
T ss_pred             CccCceeEEEECCCCCEEEEec-CC---eEEEEECCCCCCccccceEEecCC----CceEEEEEE-------CcCCCCCE
Confidence            3678899999999999999998 43   566666654310  1111222222    22 467777       78  9999


Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC---
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD---  288 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d---  288 (502)
                      ||+|+.||.|+||++.++.....                   ........+..|...|.+++|+|+ +.+|++++.+   
T Consensus        81 l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~  140 (615)
T 1pgu_A           81 LCSGDESGKVIVWGWTFDKESNS-------------------VEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEGRDN  140 (615)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTE-------------------EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECCSSC
T ss_pred             EEEecCCCEEEEEeCCCCccccc-------------------ccccccchhhcccccEEEEEEeCC-CCEEEEeccCCCC
Confidence            99999999999999963210000                   012233345578999999999999 5688898887   


Q ss_pred             -CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC---CeeEEEeCCCC
Q 010748          289 -KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA---DVESLAWDPHA  364 (502)
Q Consensus       289 -g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~v~~~~~~  364 (502)
                       +.|++||  .++.+..+.+|...|.+++|+|++..+|++++.|+.|++||+++.+.......+..   .|.+++|+|++
T Consensus       141 ~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (615)
T 1pgu_A          141 FGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS  218 (615)
T ss_dssp             SEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred             ccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC
Confidence             6888888  67788899999999999999999955899999999999999988776665556777   89999999983


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-e---ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-H---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      ..++++++.+|.|++||++++         ..+..+ .   .|...|.+++|+ ++ .+|++++.|+.|++||+.+++. 
T Consensus       219 ~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~-  286 (615)
T 1pgu_A          219 GEFVITVGSDRKISCFDGKSG---------EFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKC-  286 (615)
T ss_dssp             CCEEEEEETTCCEEEEETTTC---------CEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEE-
T ss_pred             CCEEEEEeCCCeEEEEECCCC---------CEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcE-
Confidence            448999999999999999886         666777 5   899999999999 66 9999999999999999998874 


Q ss_pred             EEEEecCC----CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          441 CIASRNPK----AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       441 ~~~~~~~~----~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                       +..+..+    ...+.++.|. ++. .|++++.+|.|++||+.+++.+.....+
T Consensus       287 -~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~  338 (615)
T 1pgu_A          287 -VQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHDEVLKTISGH  338 (615)
T ss_dssp             -EEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEEEEEEEECCC
T ss_pred             -EEEEcCCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCCCcEEEEEeCC
Confidence             4444444    4678888886 676 5889999999999999987776655443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.2e-32  Score=264.09  Aligned_cols=290  Identities=14%  Similarity=0.268  Sum_probs=223.2

Q ss_pred             CCCccccccccccCC---CceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEE
Q 010748          136 DEDSEDLEDMTINPN---DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM  212 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~---~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  212 (502)
                      ..|.+.|.+++|+|+   +++|++|+.++   .+.||.+..........+..|.    ....+++|       +|++++|
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~-------~~~~~~l  101 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWAN---DVRCWEVQDSGQTIPKAQQMHT----GPVLDVCW-------SDDGSKV  101 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTS---EEEEEEECTTSCEEEEEEEECS----SCEEEEEE-------CTTSSEE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCC---cEEEEEcCCCCceeEEEecccc----CCEEEEEE-------CcCCCEE
Confidence            468999999999999   59999999887   5677777653321101122232    33467777       7899999


Q ss_pred             EEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEe--ccCCCcEEEEEecCCc
Q 010748          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW--NKEFRNILASASADKQ  290 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~~l~sgs~dg~  290 (502)
                      ++|+.||.|++||+.+....                            .+.+|...|++++|  +|+ +.+|++|+.||.
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~  152 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAI----------------------------QIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKT  152 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEE----------------------------EEEECSSCEEEEEEEECSS-CEEEEEEETTSE
T ss_pred             EEEcCCCcEEEEEcCCCCce----------------------------eeccccCceEEEEEEeCCC-CCEEEEccCCCc
Confidence            99999999999999753211                            13369999999999  787 668999999999


Q ss_pred             EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE--eecCCeeEEEeCCCCC---
Q 010748          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAE---  365 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~---  365 (502)
                      |++||+.+++++..+..|. .+.++.+.+   ..+++++.++.+++|+++.........  .....+.++++.+...   
T Consensus       153 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (368)
T 3mmy_A          153 LKFWDTRSSNPMMVLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP  228 (368)
T ss_dssp             EEEECSSCSSCSEEEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred             EEEEECCCCcEEEEEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC
Confidence            9999999999999888664 677777775   468889999999999998765432211  2334455565544322   


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC------------CeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------AVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~------------~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      ..+++++.+|.|++|+++....      ...+..+..|..            .|++++|+|++ .+|++++.||.|++||
T Consensus       229 ~~~~~~~~dg~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd  301 (368)
T 3mmy_A          229 TGFALGSIEGRVAIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWD  301 (368)
T ss_dssp             EEEEEEETTSEEEEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEE
T ss_pred             CeEEEecCCCcEEEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEE
Confidence            2399999999999999987621      145667777765            79999999998 8999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      +.+++  ++..+..|.++|.+++|+|++.+ |++|+.|+..+.|++...
T Consensus       302 ~~~~~--~~~~~~~~~~~v~~~~~s~~g~~-l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          302 KDART--KLKTSEQLDQPISACCFNHNGNI-FAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             TTTTE--EEEECCCCSSCEEEEEECTTSSC-EEEEECCCSTTCGGGCCT
T ss_pred             CCCCc--EEEEecCCCCCceEEEECCCCCe-EEEEecccccccccccCC
Confidence            99887  57778899999999999999995 888888876655554433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.5e-32  Score=271.39  Aligned_cols=258  Identities=16%  Similarity=0.269  Sum_probs=198.4

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc------
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT------  266 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~------  266 (502)
                      ..|++|       +|+|++||+|+.||.|+||++.......+                ...........+.+|.      
T Consensus        31 V~~v~~-------s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------------~~~~~~~~~~~~~~h~~~~~~~   87 (447)
T 3dw8_B           31 ISTVEF-------NHSGELLATGDKGGRVVIFQQEQENKIQS----------------HSRGEYNVYSTFQSHEPEFDYL   87 (447)
T ss_dssp             EEEEEE-------CSSSSEEEEEETTSEEEEEEECC-----C----------------CCCCCEEEEEEEECCCCEEEGG
T ss_pred             EEEEEE-------CCCCCEEEEEcCCCeEEEEEecCCCCCCc----------------ccccceeEeccccccccccccc
Confidence            367777       79999999999999999999976432110                0001122344556787      


Q ss_pred             ------cceeeEEeccCCC-cEEEEEecCCcEEEEeCCCCeee-------------------------------------
Q 010748          267 ------DSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKCN-------------------------------------  302 (502)
Q Consensus       267 ------~~V~~l~~~~~~~-~~l~sgs~dg~v~vwd~~~~~~~-------------------------------------  302 (502)
                            ..|++++|+|++. .+|++|+.|++|++|++.+++..                                     
T Consensus        88 ~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (447)
T 3dw8_B           88 KSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEAS  167 (447)
T ss_dssp             GTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEE
T ss_pred             ccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeecc
Confidence                  8899999999942 68999999999999999765432                                     


Q ss_pred             --Ee-eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc--------eEeecCCeeEEEeCCCCCCEEEEE
Q 010748          303 --LT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--------KWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       303 --~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~v~~~~~~~~~~~~~  371 (502)
                        .. ..+|...|++++|+|++ .+|++| .|+.|++||+++......        ...|...|.+++|+|++..++++|
T Consensus       168 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          168 PRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             EEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             ceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence              12 36799999999999998 889998 799999999984332221        235778899999999875699999


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCccceEEeccCC------------CeeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CC
Q 010748          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------AVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQ  438 (502)
Q Consensus       372 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~------------~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~-~~  438 (502)
                      +.||.|++||+++....     ...+..+..|..            .|++++|+|++ .+|++++. +.|++||++. ++
T Consensus       246 ~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALC-----DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENR  318 (447)
T ss_dssp             ETTSCEEEEETTTCSSS-----CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSS
T ss_pred             eCCCeEEEEECcCCccc-----cceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcc
Confidence            99999999999987310     122567777775            89999999988 89999998 9999999987 55


Q ss_pred             eeEEEEecCCCCc---------------EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          439 PSCIASRNPKAGA---------------VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       439 ~~~~~~~~~~~~~---------------v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                        ++..+..|...               ++.++|+|++.+ |++|+.||.|+|||+.+++.+
T Consensus       319 --~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          319 --PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             --CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEEEETTTCCEE
T ss_pred             --ccceeeccccccccccccccccccccceEEEECCCCCE-EEEeccCCEEEEEEcCCCcce
Confidence              34444455321               345999999995 899999999999999998775

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.7e-31  Score=254.26  Aligned_cols=249  Identities=17%  Similarity=0.253  Sum_probs=208.8

Q ss_pred             ceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          194 LCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .|++|       +|+ +++||+|+.|++|+|||+...+...                      ......+.+|...|.++
T Consensus        42 ~~v~~-------sp~~~~~l~S~s~D~~i~vWd~~~~~~~~----------------------~~~~~~l~~h~~~V~~~   92 (340)
T 4aow_A           42 TQIAT-------TPQFPDMILSASRDKTIIMWKLTRDETNY----------------------GIPQRALRGHSHFVSDV   92 (340)
T ss_dssp             EEEEE-------CTTCTTEEEEEETTSCEEEEEECCSSSCS----------------------EEEEEEECCCSSCEEEE
T ss_pred             EEEEE-------eCCCCCEEEEEcCCCeEEEEECCCCCccc----------------------ceeeEEEeCCCCCEEEE
Confidence            68887       676 7899999999999999997543221                      22233566899999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEee
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAV  351 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~  351 (502)
                      +|+|+ +.+|++|+.|+.|++|+............+...+..+.+++.+ .+|++++.|+.+++||+....... ....+
T Consensus        93 ~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~  170 (340)
T 4aow_A           93 VISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESH  170 (340)
T ss_dssp             EECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred             EECCC-CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccc
Confidence            99999 5699999999999999999999988888889999999999998 889999999999999997654332 23356


Q ss_pred             cCCeeEEEeCCCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          352 AADVESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       352 ~~~v~~v~~~~~~~-~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      ...+.+++|++++. .++++++.|+.|++||+++.         ..+..+.+|...|++++|+|++ .+|++|+.||.|+
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~  240 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------KLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAM  240 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEE
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------ceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEE
Confidence            78899999988754 36788999999999999986         7788889999999999999998 8999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +||+++.+  .+..+.. ...|.++.|+|++.  +++++.|+.|+|||+.++..+...
T Consensus       241 iwd~~~~~--~~~~~~~-~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          241 LWDLNEGK--HLYTLDG-GDIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             EEETTTTE--EEEEEEC-SSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EEEeccCc--eeeeecC-CceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEec
Confidence            99999887  4444444 46799999999986  556778999999999987766543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-30  Score=254.23  Aligned_cols=247  Identities=15%  Similarity=0.270  Sum_probs=210.5

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++|++|+.||.|+|||+.+...                           ...+.+|...|.+++
T Consensus        36 ~~~~~-------s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~h~~~v~~~~   81 (369)
T 3zwl_B           36 TQVKY-------NKEGDLLFSCSKDSSASVWYSLNGER---------------------------LGTLDGHTGTIWSID   81 (369)
T ss_dssp             EEEEE-------CTTSCEEEEEESSSCEEEEETTTCCE---------------------------EEEECCCSSCEEEEE
T ss_pred             EEEEE-------cCCCCEEEEEeCCCEEEEEeCCCchh---------------------------hhhhhhcCCcEEEEE
Confidence            67777       78999999999999999999875322                           234457999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCccc-
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSGF-  347 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~-  347 (502)
                      |+|+ +.+|++++.||.|++||+.+++++..+. |...|.+++|+|++ .+|++++.+     +.|++||++....... 
T Consensus        82 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~  158 (369)
T 3zwl_B           82 VDCF-TKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHEL  158 (369)
T ss_dssp             ECTT-SSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred             EcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceee
Confidence            9998 5699999999999999999999999888 88999999999999 899999998     9999999987654321 


Q ss_pred             ----------eEeecC--CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          348 ----------KWAVAA--DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       348 ----------~~~~~~--~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                                ...+..  .+.+++|+|++. ++++++.+|.|++||+++.        ...+..+..|...|.+++|+|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~  229 (369)
T 3zwl_B          159 TKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNN--------YEYVDSIDLHEKSISDMQFSPD  229 (369)
T ss_dssp             EEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTT--------TEEEEEEECCSSCEEEEEECTT
T ss_pred             cccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCC--------cEeEEEEecCCCceeEEEECCC
Confidence                      223333  899999999765 8999999999999999984        3778888999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC--------------cEEEEECCC
Q 010748          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--------------KLEIWDTLS  481 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg--------------~i~vwd~~~  481 (502)
                      + .+|++++.|+.|++||+.+++.  +..+. +...+.+++|+|++++ +++++.++              .+++||+.+
T Consensus       230 ~-~~l~~~~~d~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  304 (369)
T 3zwl_B          230 L-TYFITSSRDTNSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLKEF-IILGGGQEAKDVTTTSANEGKFEARFYHKIF  304 (369)
T ss_dssp             S-SEEEEEETTSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSSSE-EEEEECCC-------------CEEEEEETTT
T ss_pred             C-CEEEEecCCceEEEEECCCCce--eeeec-CCCCceeEEecCCCce-EEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence            7 8999999999999999999874  33333 6688999999999995 77778777              899999999


Q ss_pred             CccccccccC
Q 010748          482 DAGISNRFSK  491 (502)
Q Consensus       482 ~~~~~~~~~~  491 (502)
                      ++.+.....+
T Consensus       305 ~~~~~~~~~~  314 (369)
T 3zwl_B          305 EEEIGRVQGH  314 (369)
T ss_dssp             CCEEEEEECC
T ss_pred             Ccchhheecc
Confidence            9887765544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.2e-31  Score=268.97  Aligned_cols=267  Identities=20%  Similarity=0.341  Sum_probs=207.0

Q ss_pred             CCccccccccccCC-CceEEEEEecCCcceeEEEEEecCC--------CCCCCeeeeeccccCCCcceeeeecCCCCCCC
Q 010748          137 EDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESD--------GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       137 ~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~  207 (502)
                      .|...|.+++|+|+ +++|++++.++   .+.||.+....        ......+..|.    ..+.+++|       +|
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg---~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~-------~~  191 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSS---DVLVFDYTKHPSKPEPSGECQPDLRLRGHQ----KEGYGLSW-------NP  191 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSS---CEEEEEGGGSCSSCCTTCCCCCSEEEECCS----SCCCCEEE-------CT
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCC---cEEEEECCCcccccCccccCCCcEEecCCC----CCeEEEEe-------CC
Confidence            47789999999998 67888888776   46666665421        11111122232    23477888       67


Q ss_pred             CCC-EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          208 KGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ++. +|++|+.||.|+||++........                    .......+.+|...|.+++|+|.++.+|++|+
T Consensus       192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~  251 (430)
T 2xyi_A          192 NLNGYLLSASDDHTICLWDINATPKEHR--------------------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA  251 (430)
T ss_dssp             TSTTEEEEECTTSCEEEEETTSCCBGGG--------------------EEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCCCCc--------------------eeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence            777 999999999999999975321110                    01122345589999999999997688999999


Q ss_pred             cCCcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CccceEeecCCeeEEEeCC
Q 010748          287 ADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       287 ~dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~  362 (502)
                      .||.|++||++++   +++..+..|...|++++|+|++..+|++|+.||.|++||++... .......|...|.+++|+|
T Consensus       252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            9999999999987   57778888999999999999996689999999999999999854 4444556889999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCC-----CCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPD-----STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      ++..++++++.||.|++||++.......     ......+..+.+|...|++++|+|+++.+|++++.||.|+||++...
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9888899999999999999987421100     00014567778899999999999998559999999999999998753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.1e-31  Score=262.89  Aligned_cols=253  Identities=17%  Similarity=0.194  Sum_probs=200.2

Q ss_pred             ceeeeecCCCCCCCCC-CEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          194 LCMAWLDCPLKDREKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~-~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .|++|       +|++ ++||+|+.||.|+||++......                         ......+|...|.++
T Consensus        77 ~~~~~-------~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~~~v~~~  124 (383)
T 3ei3_B           77 TSLEW-------HPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPGDAITGM  124 (383)
T ss_dssp             EEEEE-------CSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTTCBEEEE
T ss_pred             EEEEE-------CCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcCCceeEE
Confidence            67777       7888 99999999999999999753321                         111234699999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (502)
                      +|+|+++.+|++|+.|+.|++||+.+ ..+..+..   |...|.+++|+|++ .+|++|+.|+.|++||++ ........
T Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~  201 (383)
T 3ei3_B          125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEK  201 (383)
T ss_dssp             EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEE
T ss_pred             EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEec
Confidence            99995477999999999999999986 45555543   44889999999999 899999999999999995 44444456


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC-CCCCEEEEEeCCCc
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPNLLATGSTDKM  428 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~t~s~dg~  428 (502)
                      .|...|.+++|+|++..++++++.||.|++||+++....     ...+..+ .|...|++++|+| ++ .+|++++.|+.
T Consensus       202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~  274 (383)
T 3ei3_B          202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-----NSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNE  274 (383)
T ss_dssp             CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-----TCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSE
T ss_pred             cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-----cceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCc
Confidence            788999999999988778999999999999999974210     1333444 7999999999999 87 99999999999


Q ss_pred             EEEEECCCCCeeEEEEec-----CC----------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          429 VKLWDLSNNQPSCIASRN-----PK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~-----~~----------~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      |++||+++++........     .|          .+.+..++|+|++.+   +|+.||.|+|||+.+++.+.....+
T Consensus       275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCC
Confidence            999999987643222211     11          244556777777763   7789999999999999988776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.2e-31  Score=287.29  Aligned_cols=250  Identities=19%  Similarity=0.300  Sum_probs=216.2

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|++|       +|++++||+|+.+|.|+|||+.++..                           ...+.+|...|+++
T Consensus        16 v~~i~~-------sp~~~~la~~~~~g~v~iwd~~~~~~---------------------------~~~~~~~~~~v~~~   61 (814)
T 3mkq_A           16 VKGIDF-------HPTEPWVLTTLYSGRVEIWNYETQVE---------------------------VRSIQVTETPVRAG   61 (814)
T ss_dssp             EEEEEE-------CSSSSEEEEEETTSEEEEEETTTTEE---------------------------EEEEECCSSCEEEE
T ss_pred             eEEEEE-------CCCCCEEEEEeCCCEEEEEECCCCce---------------------------EEEEecCCCcEEEE
Confidence            368888       89999999999999999999975322                           22344799999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-CCccceEee
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAV  351 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~  351 (502)
                      +|+|+ +.+|++|+.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.||.|++|++++. ........+
T Consensus        62 ~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  139 (814)
T 3mkq_A           62 KFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (814)
T ss_dssp             EEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred             EEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence            99999 5699999999999999999999999999999999999999999 88999999999999999886 334445568


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcC--CCCCEEEEEeCCCc
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNP--LVPNLLATGSTDKM  428 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp--~~~~~l~t~s~dg~  428 (502)
                      ...|.+++|+|.+...+++++.+|.|++||+++.         .....+..+ ...+.+++|+|  ++ .+|++++.||.
T Consensus       140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~  209 (814)
T 3mkq_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---------TPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLT  209 (814)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS---------SCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSE
T ss_pred             CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------cceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCE
Confidence            8899999999944558999999999999999876         445555554 48999999999  76 89999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      |++||+.+++  .+..+..|.+.|.+++|+|+++ +|++++.||.|++||+.++..+.....+
T Consensus       210 i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          210 IKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             EEEEETTTTE--EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             EEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            9999999887  5677778999999999999999 5999999999999999998877655433

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=291.60  Aligned_cols=307  Identities=14%  Similarity=0.162  Sum_probs=211.8

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      |...|.+++|+| +++|++++.++   .++||.+....    .+..+.   .+....+++|       +|++++|++|+.
T Consensus        57 ~~~~V~~l~fsp-g~~L~S~s~D~---~v~lWd~~~~~----~~~~~~---~~~~V~~v~~-------sp~g~~l~sgs~  118 (902)
T 2oaj_A           57 DRSAIKEMRFVK-GIYLVVINAKD---TVYVLSLYSQK----VLTTVF---VPGKITSIDT-------DASLDWMLIGLQ  118 (902)
T ss_dssp             SCCCEEEEEEET-TTEEEEEETTC---EEEEEETTTCS----EEEEEE---CSSCEEEEEC-------CTTCSEEEEEET
T ss_pred             CCCCEEEEEEcC-CCEEEEEECcC---eEEEEECCCCc----EEEEEc---CCCCEEEEEE-------CCCCCEEEEEcC
Confidence            567899999999 88999998876   55666554432    222111   2233466666       899999999999


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCccccc-ccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIK-YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      ||.|++||+...... +..+ .               ..... ..+.+|...|++++|+|++..+|++|+.||+| +||+
T Consensus       119 dg~V~lwd~~~~~~~-~~~i-~---------------~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~  180 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLS-SFKL-D---------------NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL  180 (902)
T ss_dssp             TSCEEEEETTTTEEE-EEEE-C---------------CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred             CCcEEEEECCCCccc-ccee-c---------------cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence            999999999864321 1000 0               00000 23468999999999999756799999999999 9999


Q ss_pred             CCCeeeEeeccC------------------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-E--------
Q 010748          297 AAGKCNLTLEHH------------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-W--------  349 (502)
Q Consensus       297 ~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~--------  349 (502)
                      .+++++..+..|                  ...|++++|+|++ .+|++|+.||+|++||+++++..... .        
T Consensus       181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~  259 (902)
T 2oaj_A          181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVP  259 (902)
T ss_dssp             TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSC
T ss_pred             CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCC
Confidence            999998888765                  5789999999998 89999999999999999886643210 0        


Q ss_pred             ---------eecCCeeEEEeC----CCCCCEEEEEeCC-----CcEEEEE------------------------------
Q 010748          350 ---------AVAADVESLAWD----PHAEHSFVVSLED-----GTIKGFD------------------------------  381 (502)
Q Consensus       350 ---------~~~~~v~~v~~~----~~~~~~~~~~~~d-----g~v~i~d------------------------------  381 (502)
                               .+...|.+++|+    |++..++++|+.+     +.+.+|+                              
T Consensus       260 ~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  339 (902)
T 2oaj_A          260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL  339 (902)
T ss_dssp             CTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC
T ss_pred             CCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec
Confidence                     123357888884    3333345555433     2455554                              


Q ss_pred             -----------------------------------------CCCCCCCCCC--------CC-------------------
Q 010748          382 -----------------------------------------IRTAKSDPDS--------TS-------------------  393 (502)
Q Consensus       382 -----------------------------------------~~~~~~~~~~--------~~-------------------  393 (502)
                                                               +.++......        ..                   
T Consensus       340 ~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~  419 (902)
T 2oaj_A          340 PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG  419 (902)
T ss_dssp             SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred             CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence                                                     3222100000        00                   


Q ss_pred             -----CccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee--EEEE--ec-----CCCCcEEEEEEcC
Q 010748          394 -----QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS--CIAS--RN-----PKAGAVFSVAFSE  459 (502)
Q Consensus       394 -----~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~--~~~~--~~-----~~~~~v~~~~~sp  459 (502)
                           ......+.+|...+.+++|+|++ ++|++|+.|++|++||+.++...  ....  +.     +|...|++++|+|
T Consensus       420 ~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp  498 (902)
T 2oaj_A          420 ALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA  498 (902)
T ss_dssp             HHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET
T ss_pred             HHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC
Confidence                 00000123344445556677877 89999999999999999876421  1111  11     7888999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCc
Q 010748          460 DSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       460 d~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +++ +||+|+.||+|+||++.+++
T Consensus       499 dg~-~LAsgs~DgtV~lwd~~~~~  521 (902)
T 2oaj_A          499 ETL-ELAVSIETGDVVLFKYEVNQ  521 (902)
T ss_dssp             TTT-EEEEEETTSCEEEEEEEECC
T ss_pred             CCC-eEEEEecCcEEEEEEecCcc
Confidence            999 59999999999999998774

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.1e-31  Score=257.01  Aligned_cols=248  Identities=13%  Similarity=0.143  Sum_probs=205.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++|++|+.||.|+||++......                        .......+|...|++++
T Consensus        15 ~~~~~-------s~~~~~l~~~~~d~~v~iw~~~~~~~~------------------------~~~~~~~~~~~~v~~~~   63 (342)
T 1yfq_A           15 SDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKN------------------------VDLLQSLRYKHPLLCCN   63 (342)
T ss_dssp             EEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTE------------------------EEEEEEEECSSCEEEEE
T ss_pred             EEEEE-------cCCCCEEEEEcCCCeEEEEEeCCCCcc------------------------ccceeeeecCCceEEEE
Confidence            67877       688999999999999999999753211                        11122337999999999


Q ss_pred             eccCCCc-EEEEEecCCcEEEEeC-CCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC--------
Q 010748          274 WNKEFRN-ILASASADKQVKIWDV-AAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--------  341 (502)
Q Consensus       274 ~~~~~~~-~l~sgs~dg~v~vwd~-~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~--------  341 (502)
                      |+|+ +. +|++|+.||.|++||+ .+++. ..+.+  |...|.+++|+| + .+|++++.|+.|++||+++        
T Consensus        64 ~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~  139 (342)
T 1yfq_A           64 FIDN-TDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EEES-SSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             ECCC-CCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccc
Confidence            9999 77 8999999999999999 77755 67788  999999999999 6 8999999999999999987        


Q ss_pred             -CCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCC-CCCCCCCCCCccceEEeccCCCeeEEEEcC-CCCC
Q 010748          342 -STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT-AKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPN  418 (502)
Q Consensus       342 -~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~  418 (502)
                       .+... ...+...+.+++|+|++   +++++.+|.|++||+++ ...       ........|...|.+++|+| ++ .
T Consensus       140 ~~~~~~-~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~-~  207 (342)
T 1yfq_A          140 KNLNSN-NTKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALLPKEQ-E  207 (342)
T ss_dssp             EESCSS-SSSSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEECSGGG-C
T ss_pred             cCCeee-EEeeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEECCCCC-C
Confidence             55444 23478899999999854   89999999999999997 521       23445567889999999999 87 8


Q ss_pred             EEEEEeCCCcEEEEECCCC------CeeEEEEecCCC---------CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          419 LLATGSTDKMVKLWDLSNN------QPSCIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~------~~~~~~~~~~~~---------~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +|++++.||.|++|++...      +  ....+..|.         +.|.+++|+|++.+ |++|+.||.|++||+.+++
T Consensus       208 ~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          208 GYACSSIDGRVAVEFFDDQGDDYNSS--KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSTTCT--TCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTTE
T ss_pred             EEEEEecCCcEEEEEEcCCCcccccc--cceeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEEEEcCccHh
Confidence            9999999999999999876      4  344455554         49999999999995 8899999999999999998


Q ss_pred             cccccccC
Q 010748          484 GISNRFSK  491 (502)
Q Consensus       484 ~~~~~~~~  491 (502)
                      .+.....+
T Consensus       285 ~~~~~~~~  292 (342)
T 1yfq_A          285 KIKNFAKF  292 (342)
T ss_dssp             EEEECCCC
T ss_pred             Hhhhhhcc
Confidence            87765544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-32  Score=274.13  Aligned_cols=255  Identities=14%  Similarity=0.145  Sum_probs=199.8

Q ss_pred             cceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee
Q 010748          193 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      ..|++|       +| ++++||+|+.||.|+|||+......                     ...... ...+|...|++
T Consensus        66 V~~~~~-------s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~-~~~~h~~~v~~  116 (437)
T 3gre_A           66 ITSSAV-------SPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSS-LTYDCSSTVTQ  116 (437)
T ss_dssp             EEEEEE-------ECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCS-EEEECSSCEEE
T ss_pred             eEEEEE-------CCCCCCEEEEecCCceEEEeECcccccC---------------------ccccee-eeccCCCCEEE
Confidence            378887       68 8999999999999999998641100                     001011 11158999999


Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCC---CCeeeEeecc------------CCCCeEEEE--EcCCCCcEEEEEeCCCcE
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEH------------HTDKVQAVA--WNHHSPQILLSGSFDRSV  334 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~---~~~~~~~~~~------------h~~~v~~l~--~~~~~~~~l~s~s~dg~i  334 (502)
                      ++|+|+ +.+|++|+.||+|++||+.   +++.+..+..            +...+.++.  +++++ .+|++|+.||.|
T Consensus       117 ~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i  194 (437)
T 3gre_A          117 ITMIPN-FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRV  194 (437)
T ss_dssp             EEECTT-SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEE
T ss_pred             EEEeCC-CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeE
Confidence            999998 6699999999999999994   5544443332            455666666  55677 899999999999


Q ss_pred             EEEecCCCCCccceEe--ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-ccCCCeeEEE
Q 010748          335 VMKDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTIS  411 (502)
Q Consensus       335 ~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~  411 (502)
                      ++||+++.+.......  |...|.+++|+|++. ++++|+.||.|++||+++.         .++..+. .|..+|++++
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~  264 (437)
T 3gre_A          195 IIFDIRTLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFN---------VLIRSWSFGDHAPITHVE  264 (437)
T ss_dssp             EEEETTTCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTT---------EEEEEEBCTTCEEEEEEE
T ss_pred             EEEeCCCCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCc---------cEEEEEecCCCCceEEEE
Confidence            9999999887765555  788999999999854 8999999999999999986         6667765 7888999997


Q ss_pred             EcC----CCCCEEEEEeCCCcEEEEECCCCCeeEEEEe----------------------cC--CCCcEEEEEEcCCCCc
Q 010748          412 YNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIASR----------------------NP--KAGAVFSVAFSEDSPF  463 (502)
Q Consensus       412 ~sp----~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~----------------------~~--~~~~v~~~~~spd~~~  463 (502)
                      |+|    ++ .+|++|+.||.|++||+.+++.......                      .+  |...|++++|+ ++. 
T Consensus       265 ~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-  341 (437)
T 3gre_A          265 VCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-  341 (437)
T ss_dssp             ECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-
T ss_pred             eccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-
Confidence            765    34 6999999999999999998874332221                      11  66678999999 666 


Q ss_pred             EEEEEeCCCcEEEEECCCCccccccccC
Q 010748          464 VLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       464 ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +|++|+.||.|++||+.+++.+....++
T Consensus       342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             EEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             EEEecCCCCeEEEEECCCcccceEEecc
Confidence            5999999999999999999988766654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.1e-31  Score=263.89  Aligned_cols=249  Identities=10%  Similarity=0.112  Sum_probs=179.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEecc--------C
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK--------E  277 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--------~  277 (502)
                      ++++++||+|+.|++|+|||+.......                      ......+.+|.+.|++|+|+|        +
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~----------------------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d  155 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIIT----------------------QHVLGGKSGHHNFVNDIDIADVYSADNRLA  155 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEE----------------------EEEECTTTSCSSCEEEEEEEEEECTTCSEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccce----------------------eeeecccCCCCCceEEEEEccccccccCCC
Confidence            5678899999999999999987543221                      122335678999999999998        4


Q ss_pred             CCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc----------
Q 010748          278 FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----------  347 (502)
Q Consensus       278 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------  347 (502)
                       +++|||||.|++|+|||+.++.++..+..|...|.+++|+|++..+|++|+.||+|++||+++++....          
T Consensus       156 -~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          156 -EQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             -EEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             -CCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence             579999999999999999999888888889999999999999867899999999999999987653221          


Q ss_pred             ---------------eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC----------CCCccceEEec
Q 010748          348 ---------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS----------TSQQSSFTLHA  402 (502)
Q Consensus       348 ---------------~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~----------~~~~~~~~~~~  402 (502)
                                     ...+...+.++.|.+.....+++++.|+.+++||+.........          ...........
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence                           12345678889987433458999999999999999876321100          00011112222


Q ss_pred             cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +...+..+.+.+.+..++++|+.||.|++||+.+++.  ......|..+|++++|+|+|+ +||+++.+| +.+|.+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEEEEEGG
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEEEeC
Confidence            2233333333333435677788899999999998874  444556778999999999999 488887665 77776643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-30  Score=262.22  Aligned_cols=277  Identities=24%  Similarity=0.346  Sum_probs=223.5

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.|+  +++|++|+.++   .+.+|.+.....  ...+..|.    ....|+.|         ++++|++|+
T Consensus       157 ~h~~~v~~~~~~--~~~l~s~~~dg---~i~vwd~~~~~~--~~~~~~h~----~~v~~~~~---------~~~~l~s~s  216 (445)
T 2ovr_B          157 GHTGGVWSSQMR--DNIIISGSTDR---TLKVWNAETGEC--IHTLYGHT----STVRCMHL---------HEKRVVSGS  216 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTS---CEEEEETTTTEE--EEEECCCS----SCEEEEEE---------ETTEEEEEE
T ss_pred             CCCCCEEEEEec--CCEEEEEeCCC---eEEEEECCcCcE--EEEECCCC----CcEEEEEe---------cCCEEEEEe
Confidence            578899999997  67999999887   456665543321  11111222    22356655         477899999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .||.|++||+.++..                           ...+.+|...|.+++|  + +.+|++|+.||.|++||+
T Consensus       217 ~dg~i~~wd~~~~~~---------------------------~~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~iwd~  266 (445)
T 2ovr_B          217 RDATLRVWDIETGQC---------------------------LHVLMGHVAAVRCVQY--D-GRRVVSGAYDFMVKVWDP  266 (445)
T ss_dssp             TTSEEEEEESSSCCE---------------------------EEEEECCSSCEEEEEE--C-SSCEEEEETTSCEEEEEG
T ss_pred             CCCEEEEEECCCCcE---------------------------EEEEcCCcccEEEEEE--C-CCEEEEEcCCCEEEEEEC
Confidence            999999999975332                           2234579999999999  3 458999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      .+++++..+.+|...|.++.|  ++ .++++|+.||.|++||+++++.......+...+.++.+++   .++++|+.||.
T Consensus       267 ~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~  340 (445)
T 2ovr_B          267 ETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADST  340 (445)
T ss_dssp             GGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEEETTSC
T ss_pred             CCCcEeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC---CEEEEEeCCCe
Confidence            999999999999999999999  44 7899999999999999999887766667788899888864   38999999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEec---cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe---cCCCC
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR---NPKAG  450 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~---~~~~~  450 (502)
                      |++||++++         ..+..+..   |...|++++|++   .+|++|+.||.|++||+.+++.......   ..|.+
T Consensus       341 i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  408 (445)
T 2ovr_B          341 VKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG  408 (445)
T ss_dssp             EEEEETTTC---------CEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred             EEEEECCCC---------cEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence            999999886         66777765   889999999973   7999999999999999999884332211   46788


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCc----EEEEECCCC
Q 010748          451 AVFSVAFSEDSPFVLAIGGSKGK----LEIWDTLSD  482 (502)
Q Consensus       451 ~v~~~~~spd~~~ll~sg~~dg~----i~vwd~~~~  482 (502)
                      .|++++|+|++. +|++|+.||+    |.|||+...
T Consensus       409 ~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          409 VVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCCC
T ss_pred             eEEEEEecCCEE-EEEEcccCCCCccEEEEEECCCC
Confidence            999999999998 5999999998    999999764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.5e-31  Score=301.23  Aligned_cols=301  Identities=21%  Similarity=0.273  Sum_probs=239.8

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC-------------------------Ce--eeee---
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP-------------------------NL--YVHH---  185 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~-------------------------~l--~~~~---  185 (502)
                      ..|...|.++.|+|++++|++++.++   .+.+|..........                         .+  ...+   
T Consensus       879 ~~h~~~v~~v~~spdg~~l~s~s~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  955 (1249)
T 3sfz_A          879 RGHLSWVHGVMFSPDGSSFLTASDDQ---TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ  955 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred             CCCccceEEEEECCCCCEEEEEeCCC---eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcce
Confidence            35788999999999999999999887   567776442111000                         00  0000   


Q ss_pred             -ccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccC
Q 010748          186 -HIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS  264 (502)
Q Consensus       186 -~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (502)
                       .........|++|       +|+++++++|+.+|.|++|++.++..                           ...+.+
T Consensus       956 ~~~~~~~~i~~~~~-------sp~g~~l~~g~~~g~i~i~d~~~~~~---------------------------~~~~~~ 1001 (1249)
T 3sfz_A          956 IDYLPEAQVSCCCL-------SPHLEYVAFGDEDGAIKIIELPNNRV---------------------------FSSGVG 1001 (1249)
T ss_dssp             EEEECCSCEEEEEE-------CTTSSEEEEEETTSCCEEEETTTTSC---------------------------EEECCC
T ss_pred             EEEcccCcEEEEEE-------cCCCCEEEEEcCCCCEEEEEcCCCce---------------------------eeeccc
Confidence             0001122344444       89999999999999999999975332                           223457


Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      |...|++++|+|+ +.+|++|+.||+|++||+.+++... +..|...|.++.|+|++  .+++++.||.|++||+.+++.
T Consensus      1002 h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A         1002 HKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp             CSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCC
T ss_pred             CCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCce
Confidence            9999999999999 5699999999999999999998764 55799999999999965  688999999999999999988


Q ss_pred             ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ......+...|.+++|+|++. ++++++.||.|++||+.+.         .++..+.+|...|++++|+|++ .+|++|+
T Consensus      1078 ~~~~~~~~~~v~~~~~s~d~~-~l~s~s~d~~v~iwd~~~~---------~~~~~l~~h~~~v~~~~~s~dg-~~lat~~ 1146 (1249)
T 3sfz_A         1078 ERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIWSFDLL---------SPLHELKGHNGCVRCSAFSLDG-ILLATGD 1146 (1249)
T ss_dssp             CEEEECCSSCCCCEEECSSSS-SCEEECCSSCCCEECSSSS---------SCSBCCCCCSSCEEEEEECSSS-SEEEEEE
T ss_pred             eEEEcccCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCc---------ceeeeeccCCCcEEEEEECCCC-CEEEEEe
Confidence            877778899999999999876 7899999999999999886         6677788999999999999998 9999999


Q ss_pred             CCCcEEEEECCCCCeeEE-------EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          425 TDKMVKLWDLSNNQPSCI-------ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~-------~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      .||.|++||+.+++....       .....|.+.|++++|+|++.+ |++++  |.|++||+.++..+.....+
T Consensus      1147 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~-l~s~~--g~v~vwd~~~g~~~~~~~~~ 1217 (1249)
T 3sfz_A         1147 DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT-LVSAG--GYLKWWNVATGDSSQTFYTN 1217 (1249)
T ss_dssp             TTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSC-EEEES--SSEEEBCSSSCBCCCCCCCS
T ss_pred             CCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCE-EEECC--CeEEEEECCCCceeeeeecc
Confidence            999999999998763221       112568899999999999996 66665  89999999999988766544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-31  Score=261.42  Aligned_cols=261  Identities=15%  Similarity=0.212  Sum_probs=205.2

Q ss_pred             ceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          194 LCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~~~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .|++|.+.    ++ ...++++++.++.|+||++.+...+....                      ......|...|+++
T Consensus        22 ~~i~~~p~----~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~   75 (366)
T 3k26_A           22 FGVQFNWH----SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ----------------------SYVDADADENFYTC   75 (366)
T ss_dssp             EEEEECTT----CCTTSCEEEEEEETTEEEEEEECGGGCEEEEE----------------------EEECSCTTCCEEEE
T ss_pred             EEEEEecc----cCCCCceEEEECCCCEEEEEEcCCCcEEEeee----------------------eccccCCCCcEEEE
Confidence            67777321    11 35566666677899999997544322111                      11112477899999


Q ss_pred             EeccCC---CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748          273 AWNKEF---RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       273 ~~~~~~---~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (502)
                      +|+|++   +.+|++|+.||.|++||+.+++++..+.+|...|.+++|+| ++ .+|++|+.||.|++||+++.+.....
T Consensus        76 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A           76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             EEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEe
Confidence            999984   34899999999999999999999999999999999999999 55 89999999999999999987765544


Q ss_pred             ---EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC-------------------CCCCccceEEeccCCC
Q 010748          349 ---WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------------------STSQQSSFTLHAHDKA  406 (502)
Q Consensus       349 ---~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~-------------------~~~~~~~~~~~~h~~~  406 (502)
                         ..+...|.+++|+|++. ++++++.||.|++||+++......                   ............|...
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             CSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             cccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence               46888999999999765 899999999999999987521000                   0000112233349999


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe------------eEEEEecCCCCcEEEEEEcCC--CCcEEEEEeCCC
Q 010748          407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------------SCIASRNPKAGAVFSVAFSED--SPFVLAIGGSKG  472 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~------------~~~~~~~~~~~~v~~~~~spd--~~~ll~sg~~dg  472 (502)
                      |.+++|+  + .+|++++.|+.|++||+.+...            ..+..+..|...|++++|+|+  +. +|++|+.||
T Consensus       234 v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg  309 (366)
T 3k26_A          234 VDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVG  309 (366)
T ss_dssp             CCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTS
T ss_pred             EEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCC
Confidence            9999999  3 7999999999999999987653            457778889999999999999  88 599999999


Q ss_pred             cEEEEECCCCcccc
Q 010748          473 KLEIWDTLSDAGIS  486 (502)
Q Consensus       473 ~i~vwd~~~~~~~~  486 (502)
                      .|++||+.+++.+.
T Consensus       310 ~i~vwd~~~~~~~~  323 (366)
T 3k26_A          310 KLYVWDLEVEDPHK  323 (366)
T ss_dssp             CEEEEECCSSSGGG
T ss_pred             cEEEEECCCCCCcc
Confidence            99999999987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.7e-30  Score=259.83  Aligned_cols=232  Identities=19%  Similarity=0.338  Sum_probs=199.3

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++++|++|+.||.|++||+.++.                           ....+.+|...|++++|+|+ + +|++|+.
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~---------------------------~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~  181 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHDGGVWALKYAHG-G-ILVSGST  181 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCSSCEEEEEECST-T-EEEEEET
T ss_pred             CCCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEeCCCcCEEEEEEcCC-C-EEEEEeC
Confidence            57899999999999999987532                           22345589999999999998 4 8999999


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCcc-------------------
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSG-------------------  346 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------------  346 (502)
                      ||+|++||+.+++++..+.+|...|.+++|++  ++ .+|++|+.||+|++||+++.....                   
T Consensus       182 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (464)
T 3v7d_B          182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  260 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred             CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence            99999999999999999999999999999985  55 899999999999999998765321                   


Q ss_pred             ----ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748          347 ----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       347 ----~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                          ....+...+.++..  ++ .++++++.||.|++||+++.         .++..+.+|...|.+++|+|++ .+|++
T Consensus       261 ~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~s  327 (464)
T 3v7d_B          261 YFVGVLRGHMASVRTVSG--HG-NIVVSGSYDNTLIVWDVAQM---------KCLYILSGHTDRIYSTIYDHER-KRCIS  327 (464)
T ss_dssp             TEEEEECCCSSCEEEEEE--ET-TEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEEETTT-TEEEE
T ss_pred             EEEEEccCccceEEEEcC--CC-CEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCEEEEEEcCCC-CEEEE
Confidence                12345566776644  33 48999999999999999986         7788899999999999999988 89999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      |+.||.|++||+.+++  ++..+.+|...|.+++|++  . .|++|+.||.|++||+.++.....
T Consensus       328 g~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          328 ASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             EETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCceeee
Confidence            9999999999999887  6778889999999999984  4 599999999999999998775543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.98  E-value=7.6e-31  Score=255.52  Aligned_cols=247  Identities=17%  Similarity=0.286  Sum_probs=197.7

Q ss_pred             CcceeeeecCCCCCCCCCC-EEEEecC---CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc
Q 010748          192 FPLCMAWLDCPLKDREKGN-FMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD  267 (502)
Q Consensus       192 ~~~~~~~~~~~~~~s~~~~-~la~g~~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  267 (502)
                      ...+++|       +|++. ++++|+.   ||.|+||++.+.....                          ....+|..
T Consensus        20 ~v~~~~~-------~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~--------------------------~~~~~~~~   66 (357)
T 3i2n_A           20 TVFDCKW-------VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL--------------------------LREIEKAK   66 (357)
T ss_dssp             CEEEEEE-------CTTSSEEEEEEC--CCCEEEEEEEECSSSEEE--------------------------EEEEEESS
T ss_pred             ceEEEEE-------cCCCceEEEecCccCCCcEEEEEeCCCCcccc--------------------------eeeecccC
Confidence            3478887       78775 5567766   8999999997533211                          11226899


Q ss_pred             ceeeEEeccCC--CcEEEEEecCCcEEEEeCCCCe-eeEeeccCCCCeEEEEE------cCCCCcEEEEEeCCCcEEEEe
Q 010748          268 SVLGLAWNKEF--RNILASASADKQVKIWDVAAGK-CNLTLEHHTDKVQAVAW------NHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       268 ~V~~l~~~~~~--~~~l~sgs~dg~v~vwd~~~~~-~~~~~~~h~~~v~~l~~------~~~~~~~l~s~s~dg~i~iwd  338 (502)
                      .|.+++|+|++  +.+|++|+.||.|++||+.+++ ++..+.+|...|.++.|      +|++ .+|++++.||.|++||
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEe
Confidence            99999999984  4799999999999999999988 88999999999999965      5677 8999999999999999


Q ss_pred             cCCCCC-ccceEeec----CCeeEEE----eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeE
Q 010748          339 ARISTH-SGFKWAVA----ADVESLA----WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       339 ~~~~~~-~~~~~~~~----~~v~~v~----~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                      +++... ......+.    ..+.+++    |+|++. ++++++.+|.|++||+++.         .. .....|...|.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~-~~~~~~~~~v~~  214 (357)
T 3i2n_A          146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNM---------AL-RWETNIKNGVCS  214 (357)
T ss_dssp             TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTT---------EE-EEEEECSSCEEE
T ss_pred             CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccC---------ce-eeecCCCCceEE
Confidence            998773 33232333    3788888    677654 8999999999999999976         33 445678999999


Q ss_pred             EEEcC---CCCCEEEEEeCCCcEEEEECCCCCeeE---EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          410 ISYNP---LVPNLLATGSTDKMVKLWDLSNNQPSC---IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       410 l~~sp---~~~~~l~t~s~dg~i~vwd~~~~~~~~---~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      ++|+|   ++ .+|++++.||.|++||+++.++..   ......|...|++++|+|+++.+|++|+.||.|++||+.++.
T Consensus       215 ~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          215 LEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             EEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            99999   76 899999999999999998765322   223458999999999999998669999999999999998755


Q ss_pred             c
Q 010748          484 G  484 (502)
Q Consensus       484 ~  484 (502)
                      .
T Consensus       294 ~  294 (357)
T 3i2n_A          294 Q  294 (357)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3e-31  Score=284.35  Aligned_cols=251  Identities=23%  Similarity=0.338  Sum_probs=208.3

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++|++|+.||.|+||++....                         ......+.+|..+|++++
T Consensus        13 ~~l~~-------s~dg~~latg~~dg~I~vwd~~~~~-------------------------~~~~~~l~~h~~~V~~l~   60 (753)
T 3jro_A           13 HDAVL-------DYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRVD   60 (753)
T ss_dssp             EEECC-------CSSSCCEEEEETTTEEEEEEEETTE-------------------------EEEEEEECCCSSCEEEEE
T ss_pred             EEEEE-------CCCCCeEEEEECCCcEEEEecCCCC-------------------------CccceeccCCcCceEEEE
Confidence            56666       7899999999999999999986311                         223335568999999999


Q ss_pred             eccCC-CcEEEEEecCCcEEEEeCCCCe--eeEeeccCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCC--cc
Q 010748          274 WNKEF-RNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH--SG  346 (502)
Q Consensus       274 ~~~~~-~~~l~sgs~dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~--~~  346 (502)
                      |+|+. +++|++|+.||+|++||+.+++  .+..+.+|...|++++|+|+  + .+|++|+.||.|++||+++...  ..
T Consensus        61 ~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~  139 (753)
T 3jro_A           61 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPI  139 (753)
T ss_dssp             ECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred             ecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCccee
Confidence            98762 4699999999999999999987  77888899999999999999  6 8999999999999999998743  23


Q ss_pred             ceEeecCCeeEEEeCCC------------CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748          347 FKWAVAADVESLAWDPH------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~------------~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      ....+...|.+++|+|.            ++.++++|+.||.|++||+++....     ......+.+|...|++++|+|
T Consensus       140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~~h~~~V~~l~~sp  214 (753)
T 3jro_A          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSP  214 (753)
T ss_dssp             EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECC
T ss_pred             EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-----ceeeeeecCCCCcEEEEEecc
Confidence            34567889999999995            2458999999999999999876210     145567788999999999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEECCCCCee---EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          415 LV--PNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       415 ~~--~~~l~t~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      ++  +.+|++|+.||.|++||+.++...   .......|.+.|++++|+|++.+ |++|+.||.|+||++.++.
T Consensus       215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC-EEEECSSSCEECCBCCSSS
T ss_pred             CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE-EEEEcCCCEEEEEecCCCC
Confidence            93  399999999999999999886421   23334568889999999999995 8999999999999998644

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.98  E-value=2.4e-30  Score=271.05  Aligned_cols=281  Identities=12%  Similarity=0.176  Sum_probs=221.4

Q ss_pred             CCCccc-cccccccC--CCceEEEEEecCCcceeEEEEEecC------CCCCCCeeeeeccccCCCcceeeeecCCCCCC
Q 010748          136 DEDSED-LEDMTINP--NDAVIVCARNEDDVSHLEVYILEES------DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR  206 (502)
Q Consensus       136 ~~~~~~-v~~~~~~p--~~~~l~~~~~~~~~~~l~v~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s  206 (502)
                      ..|... |.+++|+|  ++++|++|+.++   .+.||.+...      .......+..|    .....+++|       +
T Consensus        60 ~~h~~~~v~~~~~sp~~~~~~l~s~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~-------s  125 (615)
T 1pgu_A           60 TGHGSSVVTTVKFSPIKGSQYLCSGDESG---KVIVWGWTFDKESNSVEVNVKSEFQVL----AGPISDISW-------D  125 (615)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTS---EEEEEEEEEEGGGTEEEEEEEEEEECC----SSCEEEEEE-------C
T ss_pred             ecCCCceEEEEEECcCCCCCEEEEecCCC---EEEEEeCCCCcccccccccccchhhcc----cccEEEEEE-------e
Confidence            457888 99999999  999999999876   6788887533      11000111112    233466766       7


Q ss_pred             CCCCEEEEecCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          207 EKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       207 ~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      |++++|++++.+    +.|++|+..                             .....+.+|...|.+++|+|++..+|
T Consensus       126 ~~~~~l~~~~~~~~~~~~v~~~d~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l  176 (615)
T 1pgu_A          126 FEGRRLCVVGEGRDNFGVFISWDSG-----------------------------NSLGEVSGHSQRINACHLKQSRPMRS  176 (615)
T ss_dssp             TTSSEEEEEECCSSCSEEEEETTTC-----------------------------CEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             CCCCEEEEeccCCCCccEEEEEECC-----------------------------CcceeeecCCccEEEEEECCCCCcEE
Confidence            999999999988    689999842                             12223457999999999999966689


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeeccCCC---CeEEEEEcCC-CCcEEEEEeCCCcEEEEecCCCCCccce-E---eecCC
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLEHHTD---KVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFK-W---AVAAD  354 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~---~v~~l~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~---~~~~~  354 (502)
                      ++|+.|+.|++||+.+++++..+.+|..   .|++++|+|+ + .+|++++.||.|++||+++++..... .   .+...
T Consensus       177 ~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  255 (615)
T 1pgu_A          177 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG  255 (615)
T ss_dssp             EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred             EEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence            9999999999999999999999999999   9999999999 7 89999999999999999988766644 3   78889


Q ss_pred             eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc----CCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      |.+++|+ ++ .++++++.+|.|++||+++.         ..+..+..+    ...+.++.|. ++ .++++++.+|.|+
T Consensus       256 v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~  322 (615)
T 1pgu_A          256 IFALSWL-DS-QKFATVGADATIRVWDVTTS---------KCVQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLN  322 (615)
T ss_dssp             EEEEEES-SS-SEEEEEETTSEEEEEETTTT---------EEEEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEE
T ss_pred             eEEEEEc-CC-CEEEEEcCCCcEEEEECCCC---------cEEEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEE
Confidence            9999999 54 58999999999999999986         666677666    3678888886 55 8999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      +||+.+++  .+..+.+|.+.|.+++| |+    |++++.||.|++|++.
T Consensus       323 ~~d~~~~~--~~~~~~~~~~~v~~~~~-~~----l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          323 FYELGHDE--VLKTISGHNKGITALTV-NP----LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             EEETTEEE--EEEEECCCSSCEEEEET-TT----TEEEETTSCEEETTTT
T ss_pred             EEECCCCc--EEEEEeCCCCCEEEEEe-cC----cEEECCCCeEEEEEch
Confidence            99998865  45666677777777777 65    4445555555555543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=6.1e-30  Score=254.17  Aligned_cols=234  Identities=23%  Similarity=0.392  Sum_probs=197.2

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      ++.+++++.++.|++|++.++....                          .....|...|++++|+|+ +.+|++|+.|
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~--------------------------~~~~~~~~~v~~v~~s~~-~~~l~~~~~d  155 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSA--------------------------LAETDESTYVASVKWSHD-GSFLSVGLGN  155 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEE--------------------------EEECCTTCCEEEEEECTT-SSEEEEEETT
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeE--------------------------eeecCCCCCEEEEEECCC-CCEEEEECCC
Confidence            4567888899999999997643221                          111248899999999998 5699999999


Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CccceEeecCCeeEEEeCCCCCCE
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~  367 (502)
                      |.|++||+.+++.+..+.+|...|.+++|++   .+|++|+.||.|++||++... .......|...|.+++|+|++. +
T Consensus       156 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  231 (401)
T 4aez_A          156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-Q  231 (401)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-E
T ss_pred             CeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-E
Confidence            9999999999999999999999999999953   689999999999999999544 3444557889999999999765 8


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCeeEEEEe
Q 010748          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~~~~~~~~~~  445 (502)
                      +++|+.||.|++||+++.         .++..+..|...|.+++|+|++..++++++  .|+.|++||+.+++.  +..+
T Consensus       232 l~s~~~d~~v~iwd~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~  300 (401)
T 4aez_A          232 LASGGNDNVVQIWDARSS---------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--VNTV  300 (401)
T ss_dssp             EEEEETTSCEEEEETTCS---------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--EEEE
T ss_pred             EEEEeCCCeEEEccCCCC---------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--EEEE
Confidence            999999999999999986         678888899999999999998878888876  799999999999874  4444


Q ss_pred             cCCCCcEEEEEEcCCCCcEEEE--EeCCCcEEEEECCCCcccc
Q 010748          446 NPKAGAVFSVAFSEDSPFVLAI--GGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~ll~s--g~~dg~i~vwd~~~~~~~~  486 (502)
                      . +...|.+++|+|++++ |++  |+.+|.|+||++.++....
T Consensus       301 ~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~~~~  341 (401)
T 4aez_A          301 D-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSGLTK  341 (401)
T ss_dssp             E-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTEEEE
T ss_pred             e-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCcccee
Confidence            3 5578999999999996 555  4489999999998865543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=8.8e-30  Score=256.99  Aligned_cols=241  Identities=11%  Similarity=0.065  Sum_probs=189.9

Q ss_pred             cceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCC--CCCCcCcceecCCcchhhhhhccccCCcccccccccCcccce
Q 010748          193 PLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLD--VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  269 (502)
                      ..|++|       +|++++| |+|+.||.|+||++.  .+..+..+                         ....|...|
T Consensus       105 v~~~~~-------s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-------------------------~~~~~~~~v  152 (450)
T 2vdu_B          105 IRNLRL-------TSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-------------------------KRFCFSKRP  152 (450)
T ss_dssp             EEEEEE-------CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-------------------------EEEECSSCE
T ss_pred             eEEEEE-------cCCCCEEEEEECCCCeEEEEECcCCCCceeeee-------------------------ecccCCCCc
Confidence            456666       8999996 899999999999997  43322111                         112467899


Q ss_pred             eeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeE----eeccCCCCeEEEEEcCC---CCcEEEEEeCCCcEEEEecCCC
Q 010748          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHH---SPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~---~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      ++++|+|+ +.+|++|+.+|.|++|++.+++...    .+.+|...|++++|+|+   + .+|++|+.|+.|++||+++.
T Consensus       153 ~~~~~sp~-~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          153 NAISIAED-DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCT
T ss_pred             eEEEEcCC-CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCC
Confidence            99999999 5699999999999999998887554    77889999999999999   7 89999999999999999988


Q ss_pred             CCccc-eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe--------------------
Q 010748          343 THSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--------------------  401 (502)
Q Consensus       343 ~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--------------------  401 (502)
                      ..... ...|...|.+++|+ ++ .++++++.|+.|++||++++         ..+..+.                    
T Consensus       231 ~~~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (450)
T 2vdu_B          231 FIVDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTG---------KNLSTFDYNSLIKPYLNDQHLAPPRFQ  299 (450)
T ss_dssp             TCEEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTC---------CEEEEEECHHHHGGGCCTTSBC-----
T ss_pred             ceeeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCC---------cEeeeecchhhhhhhhhhccccccccc
Confidence            76654 34688999999999 65 48999999999999999987         4444443                    


Q ss_pred             -----ccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEEC--CCC-CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC--
Q 010748          402 -----AHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--  470 (502)
Q Consensus       402 -----~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~--~~~-~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~--  470 (502)
                           .+...|.+++|+|++ .+|++++ .++.|++|++  ... ....+..+..+ +.|.+++|+|++. ++++++.  
T Consensus       300 ~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~-~v~~~~~~~  376 (450)
T 2vdu_B          300 NENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEF-QVTLDNKES  376 (450)
T ss_dssp             -----CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEE-EEEECCTTC
T ss_pred             ccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcE-EEEEecccC
Confidence                 234579999999988 7888888 8999999999  443 33456666677 8899999999642 3443332  


Q ss_pred             ----CCcEEEEECCC
Q 010748          471 ----KGKLEIWDTLS  481 (502)
Q Consensus       471 ----dg~i~vwd~~~  481 (502)
                          +..|.||.+..
T Consensus       377 ~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          377 SGVQKNFAKFIEYNL  391 (450)
T ss_dssp             CSSCCCSEEEEEEET
T ss_pred             CCCCCcceEEEEEEc
Confidence                45588887654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=4.7e-30  Score=248.30  Aligned_cols=271  Identities=15%  Similarity=0.276  Sum_probs=205.2

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeee-eeccccCCCcceeeeecCCCCCCC--CCCEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-HHHIIIPAFPLCMAWLDCPLKDRE--KGNFM  212 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l  212 (502)
                      ..|.+.|.+++|+|++++|++|+.++   .++||.+.....   .... +.-........|++|       +|  ++++|
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~~~~-------~~~~d~~~l   74 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQ---HIKVFKLDKDTS---NWELSDSWRAHDSSIVAIDW-------ASPEYGRII   74 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTS---EEEEEEECSSSC---CEEEEEEEECCSSCEEEEEE-------CCGGGCSEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCC---eEEEEECCCCCC---cceecceeccCCCcEEEEEE-------cCCCCCCEE
Confidence            45889999999999999999999886   667777765432   1111 110112233478888       56  59999


Q ss_pred             EEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCCcE
Q 010748          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQV  291 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v  291 (502)
                      ++|+.||.|+|||+........                  .........+.+|...|.+++|+|+. +.+|++|+.||.|
T Consensus        75 ~s~~~dg~v~vwd~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  136 (351)
T 3f3f_A           75 ASASYDKTVKLWEEDPDQEECS------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL  136 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCTTS------------------SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred             EEEcCCCeEEEEecCCCccccc------------------ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence            9999999999999976432110                  01113344556899999999999983 3589999999999


Q ss_pred             EEEeCCCCeeeEeec-------------cCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCC--ccceEeecCC
Q 010748          292 KIWDVAAGKCNLTLE-------------HHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH--SGFKWAVAAD  354 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~-------------~h~~~v~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~  354 (502)
                      ++||+.+++.+..+.             .|...+.++.|+|.  .+.+|++++.++.+.+|+......  ......|...
T Consensus       137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  216 (351)
T 3f3f_A          137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL  216 (351)
T ss_dssp             EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred             EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence            999999886554432             58889999999997  238999999999998888776654  2223357889


Q ss_pred             eeEEEeCCCCC---CEEEEEeCCCcEEEEECCCCCCCCC-------------------------------------CCCC
Q 010748          355 VESLAWDPHAE---HSFVVSLEDGTIKGFDIRTAKSDPD-------------------------------------STSQ  394 (502)
Q Consensus       355 v~~v~~~~~~~---~~~~~~~~dg~v~i~d~~~~~~~~~-------------------------------------~~~~  394 (502)
                      |.+++|+|++.   .++++++.||.|++||++.......                                     ....
T Consensus       217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (351)
T 3f3f_A          217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV  296 (351)
T ss_dssp             EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEE
T ss_pred             eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence            99999999863   5899999999999999987421000                                     0001


Q ss_pred             ccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ..+..+.+|...|++++|+|++ .+|++|+.||.|++|++.+++
T Consensus       297 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          297 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred             cEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCc
Confidence            4566678899999999999998 899999999999999998865

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.8e-30  Score=242.94  Aligned_cols=235  Identities=16%  Similarity=0.170  Sum_probs=198.0

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +++++|++|+.||.|++|++....                           ....+..|...|.+++|+|+ +.+|++|+
T Consensus        27 ~~~~~l~s~~~dg~v~vw~~~~~~---------------------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~   78 (313)
T 3odt_A           27 VDDSKVASVSRDGTVRLWSKDDQW---------------------------LGTVVYTGQGFLNSVCYDSE-KELLLFGG   78 (313)
T ss_dssp             EETTEEEEEETTSEEEEEEESSSE---------------------------EEEEEEECSSCEEEEEEETT-TTEEEEEE
T ss_pred             cCCCEEEEEEcCCcEEEEECCCCE---------------------------EEEEeecCCccEEEEEECCC-CCEEEEec
Confidence            478999999999999999986422                           22234468999999999999 66999999


Q ss_pred             cCCcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748          287 ADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       287 ~dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  363 (502)
                      .||.|++|++...   +.+..+.+|...|.++.|.  + .+|++++.||.|++||  ..........+...+.+++|.|.
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~  153 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF  153 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred             CCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence            9999999998754   6677888999999999993  4 7899999999999999  34444445568889999999985


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      ....+++++.+|.|++||..           .....+.. |...+.+++|+|++ . +++++.||.|++||+++++  .+
T Consensus       154 ~~~~l~~~~~d~~i~i~d~~-----------~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~--~~  218 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQND-----------KVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD--VL  218 (313)
T ss_dssp             TTTEEEEEETTSCEEEEETT-----------EEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC--EE
T ss_pred             CCCEEEEEECCCCEEEEecC-----------ceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh--hh
Confidence            55689999999999999943           55666666 89999999999987 4 9999999999999999887  56


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ..+..|.+.|++++|+|++.  |++++.||.|++||+.+++.+.....+
T Consensus       219 ~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~  265 (313)
T 3odt_A          219 RTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVITLP  265 (313)
T ss_dssp             EEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred             hhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCceeEEEecc
Confidence            67778999999999999994  788999999999999999877665444

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1e-28  Score=246.88  Aligned_cols=252  Identities=23%  Similarity=0.433  Sum_probs=207.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .++.|       |+ +++||+|. |++|+|||+.++.....                         ..+.+|...|++|+
T Consensus       109 ~~l~w-------S~-~n~lAvgl-d~tV~lWd~~tg~~~~~-------------------------~~~~~~~~~V~sv~  154 (420)
T 4gga_A          109 NLVDW-------SS-GNVLAVAL-DNSVYLWSASSGDILQL-------------------------LQMEQPGEYISSVA  154 (420)
T ss_dssp             BCEEE-------CT-TSEEEEEE-TTEEEEEETTTCCEEEE-------------------------EECCSTTCCEEEEE
T ss_pred             eeEEE-------CC-CCEEEEEe-CCEEEEEECCCCCEEEE-------------------------EEecCCCCcEEEEE
Confidence            45677       55 46888886 89999999987543321                         22346889999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc-cceEeec
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVA  352 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~  352 (502)
                      |+|+ +.+||+|+.||+|+|||+.+++++..+.+|...+.++.|++   .+|++|+.|+.+++||.+..... .....|.
T Consensus       155 fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~  230 (420)
T 4gga_A          155 WIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHS  230 (420)
T ss_dssp             ECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             ECCC-CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccc
Confidence            9999 56999999999999999999999999999999999999864   68999999999999999876554 3345688


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE--eCCCcEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG--STDKMVK  430 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~--s~dg~i~  430 (502)
                      ..+..+.|+|.+. ++++++.||.|++|+..+....     ...+.....|...|.+++|+|.++.+++++  +.|++|+
T Consensus       231 ~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~  304 (420)
T 4gga_A          231 QEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGG-----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR  304 (420)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSC-----SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred             cceeeeeecCCCC-eeeeeeccccceEEeecccccc-----ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEE
Confidence            8999999999865 8999999999999999876321     245677888999999999999887888775  4799999


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCccccccccCC
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~-~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +||+.+++  +...+..+ ..+.++.|+|++.+++++++ .||.|+|||+.+++++..+-+|.
T Consensus       305 iwd~~t~~--~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~  364 (420)
T 4gga_A          305 IWNVCSGA--CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  364 (420)
T ss_dssp             EEETTTTE--EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             EEeCCccc--cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence            99999987  44445444 57999999999997554433 68999999999999988776654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=8.5e-30  Score=248.75  Aligned_cols=283  Identities=12%  Similarity=0.156  Sum_probs=205.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEE-EE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-a~  214 (502)
                      ..|...|.+++|+|++++|++|+.++    ++||..+...    .++..+.   .. ..++.+       .++++++ ++
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~----~~iw~~~~~~----~~~~~~~---~~-~~~~~~-------~~~~~~~~~~   76 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS----FEIYNVHPVA----HIMSQEM---RH-LSKVRM-------LHRTNYVAFV   76 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE----EEEEEETTEE----EEEEEEC---SC-CCEEEE-------CTTSSEEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE----EEEEecCCcc----eeeeeec---CC-eEEEEE-------cCCCCEEEEE
Confidence            45888999999999999999987553    5677655332    1221111   11 233444       4566666 56


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      |+.++.|+|||+.++..+.                           .+ .|...|.+++|+++   .++++ .++.|++|
T Consensus        77 ~~~d~~v~iWd~~~~~~~~---------------------------~~-~~~~~v~~v~~~~~---~~~~~-~~~~i~i~  124 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVS---------------------------RI-KVDAPVKDLFLSRE---FIVVS-YGDVISVF  124 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEE---------------------------EE-ECSSCEEEEEECSS---EEEEE-ETTEEEEE
T ss_pred             ECCccEEEEEECCCCcEEE---------------------------EE-ECCCceEEEEEcCC---EEEEE-EcCEEEEE
Confidence            8888999999997543221                           11 25678999999987   34444 47899999


Q ss_pred             eCCCC-eeeEeeccCCCCeEEEEEcCCCCcEEEE--EeCCCcEEEEecCCCC----------------CccceEeecCCe
Q 010748          295 DVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLS--GSFDRSVVMKDARIST----------------HSGFKWAVAADV  355 (502)
Q Consensus       295 d~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s--~s~dg~i~iwd~~~~~----------------~~~~~~~~~~~v  355 (502)
                      |+.++ +.+..+..   +...+++++   .++++  |+.+|.|++||+++..                .......|...|
T Consensus       125 d~~~~~~~~~~~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v  198 (355)
T 3vu4_A          125 KFGNPWKRITDDIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI  198 (355)
T ss_dssp             ESSTTCCBSSCCEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE
T ss_pred             ECCCCceeeEEecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce
Confidence            99988 77776664   445566676   34444  6899999999999765                134456788999


Q ss_pred             eEEEeCCCCCCEEEEEeCCCc-EEEEECCCCCCCCCCCCCccceEEe-c-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          356 ESLAWDPHAEHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLH-A-HDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .+++|+|++. ++++|+.||+ |++||++++         ..+..+. + |...|++++|+|++ .+|++++.|++|++|
T Consensus       199 ~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw  267 (355)
T 3vu4_A          199 KMVRLNRKSD-MVATCSQDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVF  267 (355)
T ss_dssp             EEEEECTTSS-EEEEEETTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEE
T ss_pred             EEEEECCCCC-EEEEEeCCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEE
Confidence            9999999865 8999999998 999999987         6777787 5 99999999999998 999999999999999


Q ss_pred             ECCCCCeeEEEE--------------------ec-CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          433 DLSNNQPSCIAS--------------------RN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       433 d~~~~~~~~~~~--------------------~~-~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      |+..........                    +. ........++|++++. .|++++.||.+++|++..+....+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~~~~~~~~  342 (355)
T 3vu4_A          268 EIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVVFDDEMER  342 (355)
T ss_dssp             ESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEEEETTTTE
T ss_pred             EccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEEcCCCCce
Confidence            997653211111                    11 1122346689999998 488899999999999987665444

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=3.4e-29  Score=251.50  Aligned_cols=224  Identities=27%  Similarity=0.482  Sum_probs=196.1

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .++++|++|+.||.|++||+.++..                           ...+.+|...|.+++|  + +.+|++|+
T Consensus       141 ~d~~~l~~g~~dg~i~iwd~~~~~~---------------------------~~~~~~h~~~v~~l~~--~-~~~l~sg~  190 (435)
T 1p22_A          141 YDDQKIVSGLRDNTIKIWDKNTLEC---------------------------KRILTGHTGSVLCLQY--D-ERVIITGS  190 (435)
T ss_dssp             CCSSEEEEEESSSCEEEEESSSCCE---------------------------EEEECCCSSCEEEEEC--C-SSEEEEEE
T ss_pred             ECCCEEEEEeCCCeEEEEeCCCCeE---------------------------EEEEcCCCCcEEEEEE--C-CCEEEEEc
Confidence            3799999999999999999875332                           2345589999999999  3 45999999


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc---cceEeecCCeeEEEeCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKWAVAADVESLAWDPH  363 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~v~~v~~~~~  363 (502)
                      .||+|++||+.+++++..+.+|...|.+++|++   .+|++|+.||.|++||+++....   .....+...|.+++|+  
T Consensus       191 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--  265 (435)
T 1p22_A          191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--  265 (435)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--
Confidence            999999999999999999999999999999974   58999999999999999987765   3344678899999993  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                       +.++++|+.||.|++||+++.         ..+..+.+|...|.++.|+  + .+|++|+.||.|++||+++++  ++.
T Consensus       266 -~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~--~~~  330 (435)
T 1p22_A          266 -DKYIVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA--CLR  330 (435)
T ss_dssp             -TTEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC--EEE
T ss_pred             -CCEEEEEeCCCeEEEEECCcC---------cEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC--EEE
Confidence             348999999999999999986         7788899999999999996  3 799999999999999999987  677


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .+.+|...|.+++|  ++. .|++|+.||.|++||+.++.
T Consensus       331 ~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          331 VLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHT
T ss_pred             EEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCC
Confidence            78899999999999  555 59999999999999997765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=6.8e-29  Score=246.15  Aligned_cols=288  Identities=18%  Similarity=0.249  Sum_probs=190.6

Q ss_pred             CCccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          137 EDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      .|...|.++.|+| ++++|++++.++   .+.+|.+....     ..  ..........++.|.+.    ++++.+|++|
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~-----~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~  162 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDK---TLKVWDTNTLQ-----TA--DVFNFEETVYSHHMSPV----STKHCLVAVG  162 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTS---EEEEEETTTTE-----EE--EEEECSSCEEEEEECSS----CSSCCEEEEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCC---eEEEeeCCCCc-----cc--eeccCCCceeeeEeecC----CCCCcEEEEE
Confidence            4888999999999 778999998777   44555444322     11  11113344467777543    5578899999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.+|.|++||+.+...                           ...+.+|...|.+++|+|++..+|++|+.||.|++||
T Consensus       163 ~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d  215 (408)
T 4a11_B          163 TRGPKVQLCDLKSGSC---------------------------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD  215 (408)
T ss_dssp             ESSSSEEEEESSSSCC---------------------------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             cCCCeEEEEeCCCcce---------------------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEE
Confidence            9999999999975432                           2234579999999999999766799999999999999


Q ss_pred             CCCCe-eeEee---------------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee----cCCe
Q 010748          296 VAAGK-CNLTL---------------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV----AADV  355 (502)
Q Consensus       296 ~~~~~-~~~~~---------------~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v  355 (502)
                      ++++. ++..+               ..|...|.+++|+|++ .+|++++.||.|++||+++..........    ....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  294 (408)
T 4a11_B          216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG  294 (408)
T ss_dssp             TTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSC
T ss_pred             CCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceecccccccccccc
Confidence            98765 34443               5688999999999998 89999999999999999987654322211    1111


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      ..+.+.......+++++.++.|++||+.+.         .++..+.+|...|++++|+|++ .+|++++.||.|++|++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------EQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             CCCEECCSSSSCEEEEEETTEEEEEETTTC---------CEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEC
T ss_pred             ceeEEecCCCceEEEEecCCEEEEEECcCC---------cceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCC
Confidence            222233333446777888999999999986         7888999999999999999998 999999999999999999


Q ss_pred             CCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          436 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +.++..  .....   -....+.|.....+++++.++.+++|+...
T Consensus       365 ~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          365 LYEPVP--DDDET---TTKSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             C---------------------------------------------
T ss_pred             CCCccC--CCCce---EeccccccccceeecccCccCceeecCCcc
Confidence            887422  22211   122344454444567788899999998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=246.08  Aligned_cols=233  Identities=6%  Similarity=0.028  Sum_probs=181.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .+++++|++|+.||.|++||+.++..+..                           +  ....|.++.|+|.    +++|
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~---------------------------~--~~~~v~~~~~~~~----~~s~   91 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSKTITT---------------------------I--TTPNPRTGGEHPA----IISR   91 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSSCEEE---------------------------E--EEECCCTTCCCCS----EEEE
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCcEEEE---------------------------E--ecCCceeeeeCCc----eEEe
Confidence            46899999999999999999976443221                           1  1467888889886    8999


Q ss_pred             ecCCcEEEEeCC---------CCeeeEeec-cCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCccce-Eeec
Q 010748          286 SADKQVKIWDVA---------AGKCNLTLE-HHTDKVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFK-WAVA  352 (502)
Q Consensus       286 s~dg~v~vwd~~---------~~~~~~~~~-~h~~~v~~l~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~  352 (502)
                      +.|++|++|+..         +++.+..+. .|...|.+++|+|  ++ .+|++++.||+|++||+++++..... ..+.
T Consensus        92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  170 (343)
T 3lrv_A           92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSD  170 (343)
T ss_dssp             CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred             cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence            999999999665         555455543 6778999999999  88 89999999999999999988764433 2345


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc-eEEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      ..+.+++|+|++. ++++|+.||.|++||++++         ..+ ..+.. |..+|++++|+|++ .+|++++ ++.|+
T Consensus       171 ~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~---------~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~  238 (343)
T 3lrv_A          171 VEYSSGVLHKDSL-LLALYSPDGILDVYNLSSP---------DQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVV  238 (343)
T ss_dssp             CCCCEEEECTTSC-EEEEECTTSCEEEEESSCT---------TSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEE
T ss_pred             CceEEEEECCCCC-EEEEEcCCCEEEEEECCCC---------CCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEE
Confidence            5799999999865 8999999999999999987         334 66777 99999999999998 8999999 55999


Q ss_pred             EEECCCCCeeE-EEEecCCCCcE--EEEEEcCCCCcEEEEEeC-CCcEEEEECCCCccc
Q 010748          431 LWDLSNNQPSC-IASRNPKAGAV--FSVAFSEDSPFVLAIGGS-KGKLEIWDTLSDAGI  485 (502)
Q Consensus       431 vwd~~~~~~~~-~~~~~~~~~~v--~~~~~spd~~~ll~sg~~-dg~i~vwd~~~~~~~  485 (502)
                      +||+++.+... +..+..|...+  .+++|+|++++ |++++. ++.|+||++.+....
T Consensus       239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~v~~~~~~~~~  296 (343)
T 3lrv_A          239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN-MIAYSNESNSLTIYKFDKKTKN  296 (343)
T ss_dssp             EEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE-EEEEETTTTEEEEEEECTTTCS
T ss_pred             EEEcCCCCcceeecccccccccccceEEEECCCCCE-EEEecCCCCcEEEEEEcccccc
Confidence            99999876321 11112233333  46999999995 777777 999999999766543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-29  Score=251.70  Aligned_cols=264  Identities=9%  Similarity=0.064  Sum_probs=198.2

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      -...|.+++|+|||++||+|+.++   +++    +....  ..+..|. ..    ..++++       +|+|       .
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~---TV~----d~~~~--~~l~gh~-~~----v~~V~F-------sPdg-------~   65 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDI---SIG----QPKYA--KDINCNS-KN----LFHVKE-------FPLE-------F   65 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSE---EEE----EECCC--SCCSSBG-GG----TEEEEE-------ECCC-------C
T ss_pred             hhccEEEEEECCCCCEEEEEcCCc---eee----ccccc--ceecCCC-cc----EEEEEE-------CCCC-------C
Confidence            457899999999999999999886   333    22221  1222222 22    245544       6777       4


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      ++.+.+|+...   ..                         ...+ .|...|.+++|+|+ +.+||+++.||+|++||..
T Consensus        66 ~~~~~~~~~~~---~~-------------------------~~~~-~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~  115 (588)
T 2j04_A           66 ENKLDFELAQQ---NG-------------------------LLNS-QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDN  115 (588)
T ss_dssp             CCTTTTSCCCS---SC-------------------------SSTT-SCSCCEEEEEECSS-SSCEEEEETTSCEEEEETT
T ss_pred             cceEEEEeCCC---ce-------------------------Eeec-CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCC
Confidence            55555555431   11                         0111 45789999999999 5699999999999999954


Q ss_pred             CCeeeEeeccCCC-----CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-------ccce----EeecCCeeEEEeC
Q 010748          298 AGKCNLTLEHHTD-----KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-------SGFK----WAVAADVESLAWD  361 (502)
Q Consensus       298 ~~~~~~~~~~h~~-----~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~v~~~  361 (502)
                      .  ++..+. |..     .|.+++|+|+| ++|++|+.||+|++||+.++..       ....    .+|...|.+++|+
T Consensus       116 ~--~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS  191 (588)
T 2j04_A          116 K--MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY  191 (588)
T ss_dssp             E--EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred             c--eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence            4  667777 665     59999999999 9999999999999999998753       1111    2345789999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      |++   +++++.|+.|++|++.....      .....++ .+|...|.+++|+  + ..||+++ ++.|++||+.+++. 
T Consensus       192 Pdg---Laass~D~tVrlWd~~~~~~------~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~-  257 (588)
T 2j04_A          192 EDV---LVAALSNNSVFSMTVSASSH------QPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSI-  257 (588)
T ss_dssp             TTE---EEEEETTCCEEEECCCSSSS------CCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEE-
T ss_pred             CCc---EEEEeCCCeEEEEECCCCcc------ccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeE-
Confidence            976   78888999999999987621      0123455 4788999999999  5 7888887 69999999998763 


Q ss_pred             EEEEecCCCCcEEEEEE--cCCCCcEEEEEeCCCcEEEEECC
Q 010748          441 CIASRNPKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~--spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                       .....+|.+.|..++|  +|++. .|++++.+|+ ++|...
T Consensus       258 -~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d  296 (588)
T 2j04_A          258 -SSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             -EEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESS
T ss_pred             -EEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeec
Confidence             2223379999999999  99998 6999999999 999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.9e-29  Score=250.44  Aligned_cols=207  Identities=15%  Similarity=0.096  Sum_probs=173.0

Q ss_pred             cCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC--CCeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748          263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd  338 (502)
                      .+|...|++++|+|++..++++|+.||+|+|||+.  +++++..+.  .|...|++++|+|++ .+|++|+.+|.|++|+
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSID  177 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe
Confidence            46778999999999965445999999999999999  888888886  567899999999999 8999999999999999


Q ss_pred             cCCCCCcc----ceEeecCCeeEEEeCCC--CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE-EeccCCCeeEEE
Q 010748          339 ARISTHSG----FKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTIS  411 (502)
Q Consensus       339 ~~~~~~~~----~~~~~~~~v~~v~~~~~--~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~  411 (502)
                      +.......    ....|...|.+++|+|+  +..++++++.|+.|++||+++.         ..+.. +.+|...|++++
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~  248 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC---------FIVDKWLFGHKHFVSSIC  248 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT---------TCEEEECCCCSSCEEEEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC---------ceeeeeecCCCCceEEEE
Confidence            98876543    56678899999999997  2348999999999999999876         45555 568999999999


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-----------------------CCCCcEEEEEEcCCCCcEEEEE
Q 010748          412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----------------------PKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-----------------------~~~~~v~~~~~spd~~~ll~sg  468 (502)
                      |+ ++ .+|++++.|+.|++||+.+++........                       .....|.+++|+|++++ |+++
T Consensus       249 ~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~  325 (450)
T 2vdu_B          249 CG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF-VAFF  325 (450)
T ss_dssp             EC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE-EEEE
T ss_pred             EC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE-EEEE
Confidence            99 76 99999999999999999998843333321                       22357999999999996 5556


Q ss_pred             e-CCCcEEEEEC--CCC
Q 010748          469 G-SKGKLEIWDT--LSD  482 (502)
Q Consensus       469 ~-~dg~i~vwd~--~~~  482 (502)
                      + .++.|+||++  .++
T Consensus       326 ~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          326 VEATKCIIILEMSEKQK  342 (450)
T ss_dssp             ETTCSEEEEEEECSSST
T ss_pred             ECCCCeEEEEEeccCCC
Confidence            6 8999999999  554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-29  Score=241.05  Aligned_cols=282  Identities=9%  Similarity=0.040  Sum_probs=198.9

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010748          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE  222 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~  222 (502)
                      ....+.+++++|++|+.++   .+++|.+....    .+.....    ....++.|       +|.   +++|+.|+.|+
T Consensus        40 ~~~~~~~d~~~l~sg~~Dg---~v~iwd~~~~~----~~~~~~~----~~v~~~~~-------~~~---~~s~s~D~~i~   98 (343)
T 3lrv_A           40 LNKSMYYDKWVCMCRCEDG---ALHFTQLKDSK----TITTITT----PNPRTGGE-------HPA---IISRGPCNRLL   98 (343)
T ss_dssp             ECSSSSEEEEEEEEEEETT---EEEEEEESSSS----CEEEEEE----ECCCTTCC-------CCS---EEEECSTTEEE
T ss_pred             hhhhhcCCCCEEEEECCCC---cEEEEECCCCc----EEEEEec----CCceeeee-------CCc---eEEecCCCeEE
Confidence            3446678899999999998   55666665443    2222221    11223333       565   99999999999


Q ss_pred             EeeCCCCCCcCcceecCCcchhhhhhccccCCccc-ccccccCcccceeeEEecc--CCCcEEEEEecCCcEEEEeCCCC
Q 010748          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSS-IKYKKGSHTDSVLGLAWNK--EFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~l~~~~--~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      +|+.........                  ..... ......+|...|.+++|+|  + +.+|++|+.||+|++||+.++
T Consensus        99 ~w~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~  159 (343)
T 3lrv_A           99 LLYPGNQITILD------------------SKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDD  159 (343)
T ss_dssp             EEETTTEEEEEE------------------TTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSS
T ss_pred             EEEccCceEEee------------------cCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCC
Confidence            999863110000                  00011 1222336778999999999  8 569999999999999999999


Q ss_pred             eeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc-cceEe-ecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          300 KCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWA-VAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       300 ~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      +++..+. .|...|++++|+|++ .+|++|+.||.|++||++++... ..... |...|.+++|+|++. ++++++ ++.
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~  236 (343)
T 3lrv_A          160 SQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQT  236 (343)
T ss_dssp             CEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSB
T ss_pred             cEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCe
Confidence            9877663 456689999999999 89999999999999999998876 33444 789999999999865 788888 559


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCee--EEEEcCCCCCEEEEEeC-CCcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--TISYNPLVPNLLATGST-DKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~sp~~~~~l~t~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      |++||+++....      ..+..+..|...+.  +++|+|++ .+|++++. |+.|+||++.......  ..    .++.
T Consensus       237 v~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~~~~--~~----~~~~  303 (343)
T 3lrv_A          237 VVCFDLRKDVGT------LAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKTKNW--TK----DEES  303 (343)
T ss_dssp             EEEEETTSSTTC------BSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCSE--EE----EEEE
T ss_pred             EEEEEcCCCCcc------eeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccccce--Ee----cCce
Confidence            999999987321      11222222444444  69999998 89999888 9999999997654221  11    5678


Q ss_pred             EEEEcC---CCCcEEEEEeCCCcEEEEECCC
Q 010748          454 SVAFSE---DSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       454 ~~~~sp---d~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      .++|.|   +... |++++.+|.+.++-...
T Consensus       304 ~~~~~~~~~~~~~-l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          304 ALCLQSDTADFTD-MDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             ECCC----CCCCE-EEEEEETTEEEEEEECS
T ss_pred             eEecCccccccce-eEEEecCCceEEEEecC
Confidence            888988   7774 88888899998886443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=8.3e-29  Score=241.84  Aligned_cols=251  Identities=19%  Similarity=0.308  Sum_probs=197.2

Q ss_pred             cceeeeecCCCCCCCC---CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccce
Q 010748          193 PLCMAWLDCPLKDREK---GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~---~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  269 (502)
                      ..|++|       +|+   |++|++|+.||.|+||++.+..                         ......+.+|...|
T Consensus        42 v~~~~~-------~~~~~~g~~l~~~~~dg~i~iw~~~~~~-------------------------~~~~~~~~~h~~~v   89 (368)
T 3mmy_A           42 IGCLSF-------SPPTLPGNFLIAGSWANDVRCWEVQDSG-------------------------QTIPKAQQMHTGPV   89 (368)
T ss_dssp             EEEEEE-------CCTTSSSEEEEEEETTSEEEEEEECTTS-------------------------CEEEEEEEECSSCE
T ss_pred             eEEEEE-------cCCCCCceEEEEECCCCcEEEEEcCCCC-------------------------ceeEEEeccccCCE
Confidence            378888       677   6999999999999999997521                         11223455799999


Q ss_pred             eeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEE--cCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--NHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      ++++|+|+ +.+|++|+.||.|++||+.+++++. +..|...|++++|  +|++ .+|++++.||.|++||+++.+... 
T Consensus        90 ~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~-  165 (368)
T 3mmy_A           90 LDVCWSDD-GSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMM-  165 (368)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSE-
T ss_pred             EEEEECcC-CCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEE-
Confidence            99999998 6699999999999999999998776 4569999999999  8888 899999999999999999887665 


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCC---CCEEEEE
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLV---PNLLATG  423 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~---~~~l~t~  423 (502)
                      .......+.++.+.+  . .+++++.++.+++|+++...        ...... ..+...+.++.+.+..   +..++++
T Consensus       166 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (368)
T 3mmy_A          166 VLQLPERCYCADVIY--P-MAVVATAERGLIVYQLENQP--------SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG  234 (368)
T ss_dssp             EEECSSCEEEEEEET--T-EEEEEEGGGCEEEEECSSSC--------EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             EEecCCCceEEEecC--C-eeEEEeCCCcEEEEEecccc--------chhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence            444556777777765  2 78888999999999998762        222222 2234455666665543   1239999


Q ss_pred             eCCCcEEEEECCCCCe-eEEEEecCCCC------------cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748          424 STDKMVKLWDLSNNQP-SCIASRNPKAG------------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~-~~~~~~~~~~~------------~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      +.||.|++|++..... ..+..+..|..            +|++++|+|++.+ |++|+.||.|+|||+.+++++.....
T Consensus       235 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          235 SIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             ETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             cCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCCcEEEEecC
Confidence            9999999999998743 34455556654            7999999999995 89999999999999999888776554


Q ss_pred             C
Q 010748          491 K  491 (502)
Q Consensus       491 ~  491 (502)
                      +
T Consensus       314 ~  314 (368)
T 3mmy_A          314 L  314 (368)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.5e-29  Score=243.34  Aligned_cols=213  Identities=24%  Similarity=0.366  Sum_probs=184.1

Q ss_pred             cccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC--CCeeeEeeccCCCCeEEEEEcCC--CCcEEEEEeCCCcEEE
Q 010748          261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVM  336 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~i~i  336 (502)
                      .+.+|...|++++|+|+ +.+|++|+.||.|+||++.  +++.+..+.+|...|++++|++.  + .+|++|+.||.|++
T Consensus         6 ~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLI   83 (379)
T ss_dssp             CEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEE
T ss_pred             EecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEE
Confidence            45689999999999999 5699999999999999998  66788889999999999999877  6 89999999999999


Q ss_pred             EecCCCC--CccceEeecCCeeEEEeCCCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEc
Q 010748          337 KDARIST--HSGFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  413 (502)
Q Consensus       337 wd~~~~~--~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  413 (502)
                      ||+++..  .......+...|.+++|+|+. ..++++++.+|.|++||++....       .....+..|...|++++|+
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-------TSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-------CCEEEEECCTTCEEEEEEC
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-------eeeEEecCCCCceEEEEEc
Confidence            9999876  344344578899999999972 34899999999999999987632       4456678899999999999


Q ss_pred             CC------------CCCEEEEEeCCCcEEEEECCCCCe--eEEEEecCCCCcEEEEEEcCC---CCcEEEEEeCCCcEEE
Q 010748          414 PL------------VPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSED---SPFVLAIGGSKGKLEI  476 (502)
Q Consensus       414 p~------------~~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~spd---~~~ll~sg~~dg~i~v  476 (502)
                      |.            .+.+|++++.||.|++||+++...  .....+..|...|.+++|+|+   +. +|++++.||.|+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~i  235 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCII  235 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEE
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEE
Confidence            94            238999999999999999987653  355677889999999999999   66 6999999999999


Q ss_pred             EECCCCc
Q 010748          477 WDTLSDA  483 (502)
Q Consensus       477 wd~~~~~  483 (502)
                      ||+.++.
T Consensus       236 wd~~~~~  242 (379)
T 3jrp_A          236 WTQDNEQ  242 (379)
T ss_dssp             EEESSTT
T ss_pred             EeCCCCC
Confidence            9998864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=4.5e-28  Score=239.47  Aligned_cols=279  Identities=13%  Similarity=0.116  Sum_probs=208.0

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCCCCC
Q 010748          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID  230 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~~~~  230 (502)
                      .++++++.++     .|++|+...........+|     ..+.+++|       +|++++| ++++.++.|++||+.+++
T Consensus         3 ~l~vs~~~d~-----~v~v~d~~~~~~~~~~~~~-----~~~~~~~~-------s~dg~~l~~~~~~d~~i~v~d~~~~~   65 (391)
T 1l0q_A            3 FAYIANSESD-----NISVIDVTSNKVTATIPVG-----SNPMGAVI-------SPDGTKVYVANAHSNDVSIIDTATNN   65 (391)
T ss_dssp             EEEEEETTTT-----EEEEEETTTTEEEEEEECS-----SSEEEEEE-------CTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEEEEcCCCC-----EEEEEECCCCeEEEEeecC-----CCcceEEE-------CCCCCEEEEECCCCCeEEEEECCCCe
Confidence            3566666665     5555554443111111222     33567777       7899876 677789999999997543


Q ss_pred             CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCC
Q 010748          231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD  310 (502)
Q Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~  310 (502)
                      ...                           .+..| ..+.+++|+|++..++++++.++.|++||+.+++.+..+..| .
T Consensus        66 ~~~---------------------------~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~  116 (391)
T 1l0q_A           66 VIA---------------------------TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-K  116 (391)
T ss_dssp             EEE---------------------------EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-S
T ss_pred             EEE---------------------------EEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-C
Confidence            221                           11123 389999999996655567777899999999999998888754 5


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 010748          311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  390 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~  390 (502)
                      .+.+++|+|++..++++++.++.|++||+++++... .......+.+++|+|++..++++++.++.|++||+++.     
T Consensus       117 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-----  190 (391)
T 1l0q_A          117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----  190 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----
Confidence            789999999994455788889999999999876554 34445678999999998766678888999999999876     


Q ss_pred             CCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEE
Q 010748          391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~s  467 (502)
                          .....+. +...+.+++|+|++ .+|++++   .++.|++||+.+++.  +..+..+. .+.+++|+|++++++++
T Consensus       191 ----~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~-~~~~~~~s~dg~~l~~s  261 (391)
T 1l0q_A          191 ----SVIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVGP-DPAGIAVTPDGKKVYVA  261 (391)
T ss_dssp             ----EEEEEEE-CSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE--EEEEECCS-SEEEEEECTTSSEEEEE
T ss_pred             ----eEEEEEe-cCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeE--EEEEecCC-CccEEEEccCCCEEEEE
Confidence                4444443 56678999999998 6777766   789999999998873  44455453 58899999999976688


Q ss_pred             EeCCCcEEEEECCCCccccccccC
Q 010748          468 GGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       468 g~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ++.++.|++||+.+++.+.....+
T Consensus       262 ~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          262 LSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECS
T ss_pred             cCCCCEEEEEECCCCcEEEEEECC
Confidence            889999999999998877655433

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=268.44  Aligned_cols=238  Identities=17%  Similarity=0.196  Sum_probs=192.9

Q ss_pred             CcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee
Q 010748          192 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       192 ~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      ...|++|       +|++++||+|+.||.|+||+.......                            ....|...|.+
T Consensus        19 ~V~~laf-------spdg~~lAsgs~Dg~I~lw~~~~~~~~----------------------------~~~~~~~~V~~   63 (902)
T 2oaj_A           19 KPIAAAF-------DFTQNLLAIATVTGEVHIYGQQQVEVV----------------------------IKLEDRSAIKE   63 (902)
T ss_dssp             CEEEEEE-------ETTTTEEEEEETTSEEEEECSTTCEEE----------------------------EECSSCCCEEE
T ss_pred             CcEEEEE-------CCCCCEEEEEeCCCEEEEEeCCCcEEE----------------------------EEcCCCCCEEE
Confidence            3467777       799999999999999999997642211                            11247889999


Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc------
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS------  345 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------  345 (502)
                      |+|+| +. +|++++.|++|+|||+.+++++..+. |...|++++|+|++ .+|++|+.||.|++||+++....      
T Consensus        64 l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~  139 (902)
T 2oaj_A           64 MRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDN  139 (902)
T ss_dssp             EEEET-TT-EEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred             EEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceecc
Confidence            99999 45 99999999999999999999998886 67899999999999 89999999999999999876642      


Q ss_pred             -----cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-----------------
Q 010748          346 -----GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----------------  403 (502)
Q Consensus       346 -----~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-----------------  403 (502)
                           .....|.+.|.+++|+|++...+++|+.+|.| +||+++.         .++..+..|                 
T Consensus       140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~  209 (902)
T 2oaj_A          140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN---------EIKQSFIYELPPFAPGGDFSEKTNEK  209 (902)
T ss_dssp             HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT---------EEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred             ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC---------ceEEEEecccCCcCCCcccccccccc
Confidence                 11234678899999999766689999999999 9999986         455555544                 


Q ss_pred             -CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec----------------CCCCcEEEEEEc----CCCC
Q 010748          404 -DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN----------------PKAGAVFSVAFS----EDSP  462 (502)
Q Consensus       404 -~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~----------------~~~~~v~~~~~s----pd~~  462 (502)
                       ...|++++|+|++ .+|++|+.||.|++||++++++.....+.                .|..+|++++|+    |++.
T Consensus       210 h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~  288 (902)
T 2oaj_A          210 RTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT  288 (902)
T ss_dssp             BCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE
T ss_pred             cCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC
Confidence             5789999999998 99999999999999999998753332221                134579999995    5554


Q ss_pred             cEEEEEeCC-----CcEEEEEC
Q 010748          463 FVLAIGGSK-----GKLEIWDT  479 (502)
Q Consensus       463 ~ll~sg~~d-----g~i~vwd~  479 (502)
                      .+|++|+.+     ..+.+|++
T Consensus       289 ~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          289 SLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEEEEEECSTTSSCCCEEEEEE
T ss_pred             EEEEeCCCCCCCCCceEEEEec
Confidence            578888776     37999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-29  Score=272.51  Aligned_cols=257  Identities=16%  Similarity=0.226  Sum_probs=199.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCC--CCEEE
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK--GNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~la  213 (502)
                      ..|...|.+++|+|++++|++|+.++   .+.||.+..........+..|    .....|+.|       +++  +++|+
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg---~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~-------s~~~~~~~l~   71 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDK---TIKIFEVEGETHKLIDTLTGH----EGPVWRVDW-------AHPKFGTILA   71 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTT---EEEEEEEETTEEEEEEEECCC----SSCEEEEEE-------CCTTSCSEEE
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCC---cEEEEecCCCCCccceeccCC----cCceEEEEe-------cCCCCCCEEE
Confidence            45889999999999999999999887   667777763322111111122    233467777       555  99999


Q ss_pred             EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCCcEE
Q 010748          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVK  292 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v~  292 (502)
                      +|+.||.|++||+.++.                         ......+.+|...|++++|+|+. +.+|++|+.||+|+
T Consensus        72 s~s~Dg~I~vwd~~~~~-------------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  126 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGR-------------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS  126 (753)
T ss_dssp             EEETTSCEEEEEEETTE-------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EEeCCCeEEEEECCCCc-------------------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence            99999999999987532                         11223445799999999999983 45999999999999


Q ss_pred             EEeCCCCe--eeEeeccCCCCeEEEEEcCC------------CCcEEEEEeCCCcEEEEecCCCCCc----cceEeecCC
Q 010748          293 IWDVAAGK--CNLTLEHHTDKVQAVAWNHH------------SPQILLSGSFDRSVVMKDARISTHS----GFKWAVAAD  354 (502)
Q Consensus       293 vwd~~~~~--~~~~~~~h~~~v~~l~~~~~------------~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~  354 (502)
                      +||+.++.  ....+.+|...|.+++|+|.            ++.+|++|+.||.|++||+++....    .....|...
T Consensus       127 vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~  206 (753)
T 3jro_A          127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (753)
T ss_dssp             EEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             EEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence            99998873  44566789999999999995            2389999999999999999987532    223457889


Q ss_pred             eeEEEeCCCC--CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          355 VESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       355 v~~v~~~~~~--~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      |.+++|+|++  +.++++++.||.|++||+++.....    .........|...|++++|+|++ .+|++|+.||.|++|
T Consensus       207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vw  281 (753)
T 3jro_A          207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLW  281 (753)
T ss_dssp             EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC----BCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECC
T ss_pred             EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc----eeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEE
Confidence            9999999984  4589999999999999999863211    12333445688999999999998 899999999999999


Q ss_pred             ECCC
Q 010748          433 DLSN  436 (502)
Q Consensus       433 d~~~  436 (502)
                      ++..
T Consensus       282 d~~~  285 (753)
T 3jro_A          282 KENL  285 (753)
T ss_dssp             BCCS
T ss_pred             ecCC
Confidence            9974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.9e-27  Score=227.68  Aligned_cols=252  Identities=21%  Similarity=0.371  Sum_probs=203.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       |+++ +||+|. |++|+|||+.+++.+..                         ..+.+|...|++++
T Consensus        29 ~~l~W-------S~~~-~lAvg~-D~tV~iWd~~tg~~~~~-------------------------~~~~~~~~~V~~v~   74 (318)
T 4ggc_A           29 NLVDW-------SSGN-VLAVAL-DNSVYLWSASSGDILQL-------------------------LQMEQPGEYISSVA   74 (318)
T ss_dssp             BCEEE-------CTTS-EEEEEE-TTEEEEEETTTCCEEEE-------------------------EECCSTTCCEEEEE
T ss_pred             eEEEE-------CCCC-EEEEEe-CCEEEEEECCCCCEEEE-------------------------EEecCCCCeEEEEE
Confidence            46777       6664 788775 89999999987543321                         12347889999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc-cceEeec
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVA  352 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~  352 (502)
                      |+|+ +++|++|+.||+|++|++.+++++..+.+|...+.++.+.+   .++++++.++.+++|+....... .....|.
T Consensus        75 ~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (318)
T 4ggc_A           75 WIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHS  150 (318)
T ss_dssp             ECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             ECCC-CCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence            9999 56999999999999999999999999999999998877754   68999999999999999876554 3345678


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE--EEeCCCcEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA--TGSTDKMVK  430 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~--t~s~dg~i~  430 (502)
                      ..+.++.|.+.+. ++++++.||.|++||++++...     .........|.+.|.++.++|.++.+++  +++.++.|+
T Consensus       151 ~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~  224 (318)
T 4ggc_A          151 QEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGG-----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR  224 (318)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTB-----SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred             CceEEEEEcCCCC-EEEEEecCcceeEEECCCCccc-----ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence            8999999999865 8999999999999999876321     2345667778899999999998766654  456789999


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCccccccccCC
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG-GSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg-~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +||......  . ....+...+..+.|+|++.++++++ +.|+.|+|||+.+++++..+.+|.
T Consensus       225 lwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~  284 (318)
T 4ggc_A          225 IWNVCSGAC--L-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  284 (318)
T ss_dssp             EEETTTCCE--E-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             EEecccccc--c-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC
Confidence            999988873  2 2334567799999999998655433 478999999999999988776654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=7.1e-28  Score=241.43  Aligned_cols=283  Identities=8%  Similarity=0.037  Sum_probs=210.7

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeee-e--c-cccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH-H--H-IIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~-~--~-~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..+.++.|+|++.++++++.++   .+.+  |+...+   .+... .  . ........++.|       ++++++++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~---~i~~--~d~~~g---~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~s~  187 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDE---GMDV--LDINSG---QTVRLSPPEKYKKKLGFVETISI-------PEHNELWVSQ  187 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSS---SEEE--EETTTC---CEEEECCCHHHHTTCCEEEEEEE-------GGGTEEEEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCC---eEEE--EECCCC---eEeeecCcccccccCCceeEEEE-------cCCCEEEEEE
Confidence            4567999999666666665554   3444  444433   22110 0  0 001112345666       6889999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.++.|++||+.+....                           ..+..|...+.+++|+|++..++++++.++.|++||
T Consensus       188 ~~d~~v~~~d~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d  240 (433)
T 3bws_A          188 MQANAVHVFDLKTLAYK---------------------------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID  240 (433)
T ss_dssp             GGGTEEEEEETTTCCEE---------------------------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCceEE---------------------------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence            99999999999753321                           223368889999999999665556777899999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe--------CCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  367 (502)
                      +.+++.+..+..+ ..+.+++|+|++ .+|++++        .||.|++||+++++... ...+...+.+++|+|++..+
T Consensus       241 ~~~~~~~~~~~~~-~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          241 RKTKLEIRKTDKI-GLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLID-TIGPPGNKRHIVSGNTENKI  317 (433)
T ss_dssp             TTTTEEEEECCCC-SEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-EEEEEECEEEEEECSSTTEE
T ss_pred             CCCCcEEEEecCC-CCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEe-eccCCCCcceEEECCCCCEE
Confidence            9999998888754 569999999999 7777777        58899999999876544 44566789999999998767


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC---------------CCcEEEE
Q 010748          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---------------DKMVKLW  432 (502)
Q Consensus       368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---------------dg~i~vw  432 (502)
                      +++++.++.|++||+.+.         ..+..+. +...+.+++|+|++ .+|++++.               ||.|++|
T Consensus       318 ~~~~~~~~~v~v~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          318 YVSDMCCSKIEVYDLKEK---------KVQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             EEEETTTTEEEEEETTTT---------EEEEEEE-CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             EEEecCCCEEEEEECCCC---------cEEEEec-CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEE
Confidence            788899999999999875         4555554 67889999999998 77777766               5799999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      |+.+++.  +..+.. ...+.+++|+|++++++++++.++.|++|++..
T Consensus       387 d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          387 DTTTDTV--KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ETTTTEE--EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ECCCCcE--EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9998874  334443 457999999999996444444599999999863

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.3e-27  Score=239.59  Aligned_cols=301  Identities=11%  Similarity=0.072  Sum_probs=223.4

Q ss_pred             cccccccc---ccCCCceEEEEEecCCc-----------ceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCC
Q 010748          139 SEDLEDMT---INPNDAVIVCARNEDDV-----------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK  204 (502)
Q Consensus       139 ~~~v~~~~---~~p~~~~l~~~~~~~~~-----------~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  204 (502)
                      ...+..+.   |+|+++.+++++.....           ..+.||.++....   .+...........+.+++|      
T Consensus        60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~~~~~~------  130 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGI---THRFISRFKTGFQPKSVRF------  130 (433)
T ss_dssp             TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTC---SEEEEEEEECSSCBCCCEE------
T ss_pred             CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCC---cceEEEEEcCCCCceEEEE------
Confidence            34567777   88988877766543321           1126666665433   3333333334455667766      


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                       +|++.++++++.++.|++||+.++.....                      .....+.+|...|.+++|+++ +.++++
T Consensus       131 -s~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------------~~~~~~~~~~~~v~~~~~~~~-~~~~~s  186 (433)
T 3bws_A          131 -IDNTRLAIPLLEDEGMDVLDINSGQTVRL----------------------SPPEKYKKKLGFVETISIPEH-NELWVS  186 (433)
T ss_dssp             -SSSSEEEEEBTTSSSEEEEETTTCCEEEE----------------------CCCHHHHTTCCEEEEEEEGGG-TEEEEE
T ss_pred             -eCCCeEEEEeCCCCeEEEEECCCCeEeee----------------------cCcccccccCCceeEEEEcCC-CEEEEE
Confidence             67788889999999999999986543211                      011123478899999999998 669999


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  364 (502)
                      ++.|+.|++||+.+++.+..+..|...+.+++|+|++..++++++.++.|++||+++++... .......+.+++|+|++
T Consensus       187 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~g  265 (433)
T 3bws_A          187 QMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR-KTDKIGLPRGLLLSKDG  265 (433)
T ss_dssp             EGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-ECCCCSEEEEEEECTTS
T ss_pred             ECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-EecCCCCceEEEEcCCC
Confidence            99999999999999999999988999999999999994444666689999999998776543 33345569999999987


Q ss_pred             CCEEEEEe--------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          365 EHSFVVSL--------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       365 ~~~~~~~~--------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      . .+++++        .+|.|++||++++         ..+.. ..|...+.+++|+|++..++++++.++.|++||+.+
T Consensus       266 ~-~l~~~~~~~~~~~~~dg~i~~~d~~~~---------~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          266 K-ELYIAQFSASNQESGGGRLGIYSMDKE---------KLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             S-EEEEEEEESCTTCSCCEEEEEEETTTT---------EEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             C-EEEEEECCCCccccCCCeEEEEECCCC---------cEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence            6 566655        5889999999875         33333 345668999999999855778889999999999998


Q ss_pred             CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC---------------CCcEEEEECCCCcccccc
Q 010748          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS---------------KGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~---------------dg~i~vwd~~~~~~~~~~  488 (502)
                      ++.  +..+. +...+.+++|+|++++ |++++.               ||.|++||+.+++.+...
T Consensus       335 ~~~--~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          335 KKV--QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             TEE--EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             CcE--EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            763  33333 5677999999999996 555554               579999999998876544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=7.2e-29  Score=245.67  Aligned_cols=297  Identities=12%  Similarity=0.078  Sum_probs=184.8

Q ss_pred             eeccccCCCcceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCc----ceecCCcchhhhhhccccCCcccc
Q 010748          184 HHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQP----HVILGGIDEEKKKKKSKKGKKSSI  258 (502)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~  258 (502)
                      .|..+++.+|+++.|...    +++ ++++++| .++.|.+|+.........    ...+.........  .........
T Consensus         9 ~~~lpl~~~p~~~~w~~~----~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   81 (393)
T 4gq1_A            9 QYQLPLNVRPYTTTWCSQ----SPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPT--LHLSFSSSC   81 (393)
T ss_dssp             EEECCTTCCEEEEEECTT----SGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCE--EEEEECTTC
T ss_pred             ceEecCCCCCeEEEEeCC----CCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCe--eeEeecCCc
Confidence            456778899999999643    444 4555555 578899998643211110    0000000000000  000000011


Q ss_pred             cccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeee-----EeeccCCCCeEEEEEcC--------CCCcEE
Q 010748          259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN-----LTLEHHTDKVQAVAWNH--------HSPQIL  325 (502)
Q Consensus       259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-----~~~~~h~~~v~~l~~~~--------~~~~~l  325 (502)
                      ......|...+....+.++ +.+|++|+.|++|+|||+.++.+.     ..+.+|.+.|++++|+|        ++ ++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~l  159 (393)
T 4gq1_A           82 SYSENLHDGDGNVNSSPVY-SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVI  159 (393)
T ss_dssp             EEECC----------CCEE-EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEE
T ss_pred             cccccccCCCcceeecCCC-CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEE
Confidence            1112234344444444444 678999999999999999887543     34689999999999997        55 899


Q ss_pred             EEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC------------
Q 010748          326 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS------------  393 (502)
Q Consensus       326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~------------  393 (502)
                      ++|+.|++|+|||+++.........+...+.+++|+|++..++++++.||.|++||+++.........            
T Consensus       160 as~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~  239 (393)
T 4gq1_A          160 ASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL  239 (393)
T ss_dssp             EEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred             EEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence            99999999999999988877778889999999999998877899999999999999988643111000            


Q ss_pred             ----CccceEEeccCCCeeEEEEc-CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE-------------
Q 010748          394 ----QQSSFTLHAHDKAVCTISYN-PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV-------------  455 (502)
Q Consensus       394 ----~~~~~~~~~h~~~v~~l~~s-p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-------------  455 (502)
                          ........+|...+.++.|+ |++ ..|++++.|+++++||+..++.  ...+..|...+..+             
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          240 NTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND--YNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             ESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSC
T ss_pred             ccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC--CceEeeecCccccEEEccccccccccC
Confidence                00112234678889999997 566 8999999999999999987652  22233333333322             


Q ss_pred             -----EEcC-CCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          456 -----AFSE-DSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       456 -----~~sp-d~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                           .|+| .+..++++|+.||.|+|||+.++..+.....+.
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~  359 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG  359 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred             cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence                 2333 344457788889999999999998877665554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.7e-27  Score=232.37  Aligned_cols=239  Identities=11%  Similarity=0.170  Sum_probs=179.9

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|++|       +|+|++||+|+.++ ++||++.......                             ..+...+..+
T Consensus        22 V~~v~f-------s~dg~~la~g~~~~-~~iw~~~~~~~~~-----------------------------~~~~~~~~~~   64 (355)
T 3vu4_A           22 VTDYEF-------NQDQSCLILSTLKS-FEIYNVHPVAHIM-----------------------------SQEMRHLSKV   64 (355)
T ss_dssp             CCEEEE-------CTTSSEEEEECSSE-EEEEEETTEEEEE-----------------------------EEECSCCCEE
T ss_pred             eEEEEE-------CCCCCEEEEEcCCE-EEEEecCCcceee-----------------------------eeecCCeEEE
Confidence            367777       89999999998775 7899986422111                             0122247778


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-CCccceEee
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAV  351 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~  351 (502)
                      ++.+....++++|+.|++|++||+.+++++..+. |...|.++.|+++.   ++++ .++.|++||+++. +....... 
T Consensus        65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~-  138 (355)
T 3vu4_A           65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR-  138 (355)
T ss_dssp             EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE-
T ss_pred             EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc-
Confidence            8888755455778889999999999999999887 67799999999864   4443 4789999999987 44433322 


Q ss_pred             cCCeeEEEeCCCCCCEEEE--EeCCCcEEEEECCCCCCCCCC------CCCcc-ceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748          352 AADVESLAWDPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDS------TSQQS-SFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~--~~~dg~v~i~d~~~~~~~~~~------~~~~~-~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                        ....+++++  . ++++  |+.+|.|++||+++.......      ....+ +..+.+|...|++++|+|++ .+|++
T Consensus       139 --~~~~~~~s~--~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s  212 (355)
T 3vu4_A          139 --FGGVCEFSN--G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVAT  212 (355)
T ss_dssp             --EEEEEEEET--T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred             --CCceEEEEc--c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEE
Confidence              344555666  3 4554  689999999999975210000      00013 78889999999999999998 99999


Q ss_pred             EeCCCc-EEEEECCCCCeeEEEEec-C-CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          423 GSTDKM-VKLWDLSNNQPSCIASRN-P-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       423 ~s~dg~-i~vwd~~~~~~~~~~~~~-~-~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      |+.|++ |++||+++++  ++..+. + |.+.|++++|+|++. +|++++.|++|+|||+....
T Consensus       213 ~s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          213 CSQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred             EeCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence            999998 9999999988  455555 4 899999999999999 59999999999999998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.3e-27  Score=234.06  Aligned_cols=263  Identities=8%  Similarity=0.055  Sum_probs=191.2

Q ss_pred             cCCCcceeeeecCCCCCCCCCCEEEEecCCC-------cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCccccccc
Q 010748          189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEP-------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYK  261 (502)
Q Consensus       189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg-------~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  261 (502)
                      +..+.+|++|       +|++++||+|+.+.       .|++|+++.........                 ........
T Consensus        13 ~g~PV~sv~f-------s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~-----------------~~~~~~~~   68 (365)
T 4h5i_A           13 VGYPAYGAKF-------LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ-----------------FHILSEFA   68 (365)
T ss_dssp             CSSCEEEEEE-------EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH-----------------EEEEEEEE
T ss_pred             CCCCEEEEEE-------eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee-----------------eeeeeEEE
Confidence            3333467777       68999999997543       59999997543221100                 00112234


Q ss_pred             ccCcccceeeEEeccCCCcEEEEE-----------ecCCcEEEEeCCCCee----eEee-----ccCCCCeEEEEEcCCC
Q 010748          262 KGSHTDSVLGLAWNKEFRNILASA-----------SADKQVKIWDVAAGKC----NLTL-----EHHTDKVQAVAWNHHS  321 (502)
Q Consensus       262 ~~~h~~~V~~l~~~~~~~~~l~sg-----------s~dg~v~vwd~~~~~~----~~~~-----~~h~~~v~~l~~~~~~  321 (502)
                      +.+|...|++++++++   .+++|           +.|+++++|++.....    +...     ..+...+.+++|+|+|
T Consensus        69 l~~~~~~v~s~~~~~~---~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           69 LEDNDDSPTAIDASKG---IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             CCTTSCCCCEEEEETT---EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             ccCCCCceEEEEeCCC---EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            5678899999988754   55554           4578899999865432    1111     2244568999999999


Q ss_pred             CcEEEE--EeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE
Q 010748          322 PQILLS--GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       322 ~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                       +++++  ++.|++|++||+++..... ...+...|.+++|+|++. ++++++ ++.+.+|+..++.       ......
T Consensus       146 -~~la~as~~~d~~i~iwd~~~~~~~~-~~~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~-------~~~~~~  214 (365)
T 4h5i_A          146 -TVAAIASSKVPAIMRIIDPSDLTEKF-EIETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGS-------CIARKT  214 (365)
T ss_dssp             -SCEEEEESCSSCEEEEEETTTTEEEE-EEECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCC-------EEEEEC
T ss_pred             -CEEEEEECCCCCEEEEeECCCCcEEE-EeCCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCc-------ceeeee
Confidence             66654  4478999999999877655 456788999999999876 677776 4556677766651       122233


Q ss_pred             EeccCCCeeEEEEcCCCCCEEEEEeCCC----cEEEEECCCCCee--EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc
Q 010748          400 LHAHDKAVCTISYNPLVPNLLATGSTDK----MVKLWDLSNNQPS--CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK  473 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg----~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~  473 (502)
                      ...|...|.+++|+|++ .++++++.++    .+++|++......  ....+.+|...|++++|+|+++ +||+|+.|++
T Consensus       215 ~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~  292 (365)
T 4h5i_A          215 DFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNS  292 (365)
T ss_dssp             CCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSC
T ss_pred             cCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCE
Confidence            45688899999999998 8899998887    5888998776532  3456678899999999999999 5999999999


Q ss_pred             EEEEECCCCccccccccC
Q 010748          474 LEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       474 i~vwd~~~~~~~~~~~~~  491 (502)
                      |+|||+.+++++.+....
T Consensus       293 V~iwd~~~~~~~~~~~~g  310 (365)
T 4h5i_A          293 IALVKLKDLSMSKIFKQA  310 (365)
T ss_dssp             EEEEETTTTEEEEEETTS
T ss_pred             EEEEECCCCcEEEEecCc
Confidence            999999999988876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.1e-27  Score=235.93  Aligned_cols=237  Identities=11%  Similarity=0.054  Sum_probs=177.0

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..+++|       +|||+++|+++.|++|+  +.....                              .+.+|...|.++
T Consensus        18 v~sv~~-------SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~~~v~~V   58 (588)
T 2j04_A           18 KNNLTW-------ARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNSKNLFHV   58 (588)
T ss_dssp             SCCEEE-------CTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBGGGTEEE
T ss_pred             EEEEEE-------CCCCCEEEEEcCCceee--cccccc------------------------------eecCCCccEEEE
Confidence            356666       89999999999999999  643211                              124799999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      +|+|+|        .++++.+|+.... .+.++ .|...|.+++|+|+| .+|++++.||.|++|+...  ..... .+.
T Consensus        59 ~FsPdg--------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l-~~~  124 (588)
T 2j04_A           59 KEFPLE--------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNL-DSK  124 (588)
T ss_dssp             EEECCC--------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEEC-CCS
T ss_pred             EECCCC--------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeec-cCC
Confidence            999995        4566666654322 22333 458899999999999 8999999999999999644  22211 233


Q ss_pred             C-----CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE----eccCCCeeEEEEcCCCCCEEEEE
Q 010748          353 A-----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL----HAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       353 ~-----~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .     .+.+++|+|++. ++++|+.||+|++||+..+.....  ....+.++    .+|...|.+++|+|++   ++++
T Consensus       125 ~~~~~~sv~svafSPDG~-~LAsgs~DGtVkIWd~~~~~l~~~--~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laas  198 (588)
T 2j04_A          125 GNLSSRTYHCFEWNPIES-SIVVGNEDGELQFFSIRKNSENTP--EFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAA  198 (588)
T ss_dssp             SCSTTTCEEEEEECSSSS-CEEEEETTSEEEEEECCCCTTTCC--CCEEEEEEECSCTTCCCCEEEEEEETTE---EEEE
T ss_pred             CccccccEEEEEEcCCCC-EEEEEcCCCEEEEEECCCCccccc--cceeeeeeecccccccccEEEEEEcCCc---EEEE
Confidence            3     499999999876 899999999999999987621000  00124565    5677899999999975   8889


Q ss_pred             eCCCcEEEEECCCCCee-EEEEe-cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          424 STDKMVKLWDLSNNQPS-CIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~-~~~~~-~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +.|++|++|++..+... ....+ .+|...|.+++|+  +. .||+++ ++.|++||+.++......++|.
T Consensus       199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~  265 (588)
T 2j04_A          199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSL  265 (588)
T ss_dssp             ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCC
T ss_pred             eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCC
Confidence            99999999999887632 22344 4788899999999  55 588776 6999999999887744444543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.7e-26  Score=215.61  Aligned_cols=198  Identities=14%  Similarity=0.115  Sum_probs=145.9

Q ss_pred             cccceeeEEeccC----CCcEEEEEe--------------------cCCcEEEEeC-CCCeeeEeeccCCCCeEEEEEcC
Q 010748          265 HTDSVLGLAWNKE----FRNILASAS--------------------ADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNH  319 (502)
Q Consensus       265 h~~~V~~l~~~~~----~~~~l~sgs--------------------~dg~v~vwd~-~~~~~~~~~~~h~~~v~~l~~~~  319 (502)
                      |...|++|+++|+    +. ++++++                    .|+.|++|++ .+++.+..+.+|...++.++|++
T Consensus       110 ~~~~v~sla~spd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE  188 (356)
T ss_dssp             SEEEEEEECC------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred             cccceEEEEECCCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence            4456777777776    33 444444                    3888888888 44777788888888888888888


Q ss_pred             ---CCCcEEEEEeCCCcEEEEecCCCCCccceEee---cCCeeEEEeCCCCCCE-----------EEEEeCCCcEEEEEC
Q 010748          320 ---HSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHS-----------FVVSLEDGTIKGFDI  382 (502)
Q Consensus       320 ---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~-----------~~~~~~dg~v~i~d~  382 (502)
                         ++ .+|++|+.|++|+|||+++++....+..+   ...+.+++|+|++..+           +++|+.|++|++||.
T Consensus       189 ~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~  267 (356)
T 2w18_A          189 VQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP  267 (356)
T ss_dssp             EETST-TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred             cCCCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence               45 78999999999999999999876655433   2357788999976532           256788999999999


Q ss_pred             CCCCCCCCCCCCccceEE-----eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE-EEE
Q 010748          383 RTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF-SVA  456 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~  456 (502)
                      .++         ..+..+     .+|...+.+..++  + .++++++.|++|+|||+.+++  ++.++.+|...+. +++
T Consensus       268 ~tg---------k~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk--~l~tL~gH~~~vvs~va  333 (356)
T 2w18_A          268 KTT---------LSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ--CTALLPPVSDQHWSFVK  333 (356)
T ss_dssp             TTT---------EEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS--EEEEECCC--CCCCEEE
T ss_pred             CCC---------EEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc--EEEEecCCCCCeEEEEE
Confidence            876         443333     3566655555555  4 789999999999999999998  6778888877655 689


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEC
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      |+|+|+ +|++|+.|++|+|||+
T Consensus       334 fSPDG~-~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          334 WSGTDS-HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ECSSSS-EEEEECTTSCEEEEEE
T ss_pred             ECCCCC-EEEEEECCCcEEEecC
Confidence            999999 5999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.5e-25  Score=221.32  Aligned_cols=238  Identities=14%  Similarity=0.099  Sum_probs=186.0

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +.++++++.++.|++||+.++....                           .+..| ..+.+++|+|++..++++++.|
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~---------------------------~~~~~-~~~~~~~~s~dg~~l~~~~~~d   53 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTA---------------------------TIPVG-SNPMGAVISPDGTKVYVANAHS   53 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEE---------------------------EEECS-SSEEEEEECTTSSEEEEEEGGG
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEE---------------------------EeecC-CCcceEEECCCCCEEEEECCCC
Confidence            3468889999999999997643221                           22234 4589999999966556888899


Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~  368 (502)
                      ++|++||+.+++++..+..+. .+.+++|+|++..++++++.++.|++||+.+++... ...+...+.+++|+|++..++
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG-TVKTGKSPLGLALSPDGKKLY  131 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECSSSEEEEEECTTSSEEE
T ss_pred             CeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE-EEeCCCCcceEEECCCCCEEE
Confidence            999999999999999887655 899999999994444666678999999999876654 345566789999999987566


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC
Q 010748          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK  448 (502)
Q Consensus       369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~  448 (502)
                      ++++.++.|++||++++         ..+..+..| ..+.+++|+|++..++++++.++.|++||+.+++.  +..+. +
T Consensus       132 ~~~~~~~~v~~~d~~~~---------~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~-~  198 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTK---------AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV--IDTVK-V  198 (391)
T ss_dssp             EEETTTTEEEEEETTTT---------EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE-C
T ss_pred             EEeCCCCEEEEEECCCC---------cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE--EEEEe-c
Confidence            78888999999999876         555666554 45799999999844447888899999999998863  33333 4


Q ss_pred             CCcEEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCccccccc
Q 010748          449 AGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       449 ~~~v~~~~~spd~~~ll~sg~--~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ...+.+++|+|++.++++++.  .++.|++||+.+++.+....
T Consensus       199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~  241 (391)
T 1l0q_A          199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP  241 (391)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe
Confidence            567999999999996444443  68999999999887765543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=5.8e-26  Score=213.30  Aligned_cols=187  Identities=13%  Similarity=0.138  Sum_probs=141.1

Q ss_pred             CCCCEEEEec--CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEecc---CCCcE
Q 010748          207 EKGNFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRNI  281 (502)
Q Consensus       207 ~~~~~la~g~--~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~  281 (502)
                      ++++++.+++  .++.|++|++...                          .+....+.+|...+..++|++   + +.+
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~d--------------------------G~~~~s~~~~~~~v~~l~fs~~~g~-~~~  195 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAED--------------------------GGGKENQFLMPPEETILTFAEVQGM-QEA  195 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTT--------------------------SCEEEEEEECCCSSCEEEEEEEETS-TTE
T ss_pred             CCCcEEEecccCCCCcEEEEEECCC--------------------------CceeeeeccCCCceeeEEeeccCCC-Cce
Confidence            3577777744  6899999998431                          112223447888999999998   4 569


Q ss_pred             EEEEecCCcEEEEeCCCCeeeEeeccCC---CCeEEEEEcCCCCcEE------------EEEeCCCcEEEEecCCCCCcc
Q 010748          282 LASASADKQVKIWDVAAGKCNLTLEHHT---DKVQAVAWNHHSPQIL------------LSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       282 l~sgs~dg~v~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l------------~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      |++|+.|++|+|||+.++++++++.+|.   ..+.+++|+|++ .++            ++|+.|++|++||..+++...
T Consensus       196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence            9999999999999999999999997643   467888999998 655            678899999999998876543


Q ss_pred             ceE-----eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCee-EEEEcCCCCCEE
Q 010748          347 FKW-----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC-TISYNPLVPNLL  420 (502)
Q Consensus       347 ~~~-----~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l  420 (502)
                      ...     ++...+.+..++   ..++++++.||+|++||+.++         +.+.++.+|...+. +++|+|++ .+|
T Consensus       275 v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSPDG-~~L  341 (356)
T 2w18_A          275 VMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSGTD-SHL  341 (356)
T ss_dssp             EEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECSSS-SEE
T ss_pred             EEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECCCC-CEE
Confidence            221     222233333333   237899999999999999987         78889988987655 58999998 999


Q ss_pred             EEEeCCCcEEEEEC
Q 010748          421 ATGSTDKMVKLWDL  434 (502)
Q Consensus       421 ~t~s~dg~i~vwd~  434 (502)
                      ++|+.|++|+|||+
T Consensus       342 aSGS~D~TIklWd~  355 (356)
T 2w18_A          342 LAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             EEEECCCcEEEecC
Confidence            99999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=2.6e-23  Score=213.68  Aligned_cols=310  Identities=11%  Similarity=0.091  Sum_probs=216.7

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEec--CCCCCCCeeeeeccccCCCcceeeeecCCCCCCC----CCCEEEEe
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEE--SDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE----KGNFMAVG  215 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~la~g  215 (502)
                      +..+.|+|++++|++++.++     .|.+|+.  ...   .  ..........|..+++       +|    +|++|+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~-----~V~v~D~~~~t~---~--~~~~i~~g~~p~~va~-------sp~~~~dg~~l~v~  243 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDA-----RIDMIDLWAKEP---T--KVAEIKIGIEARSVES-------SKFKGYEDRYTIAG  243 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTS-----EEEEEETTSSSC---E--EEEEEECCSEEEEEEE-------CCSTTCTTTEEEEE
T ss_pred             cceEEECCCCCEEEEECCCC-----eEEEEECcCCCC---c--EEEEEecCCCcceEEe-------CCCcCCCCCEEEEE
Confidence            77899999999999998775     4455554  322   1  2222233344555554       88    99999999


Q ss_pred             cC-CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc-ceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          216 SM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       216 ~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      +. +++|.|||..+.+.+..+...+.                . ......|.. .+.++.++|+++.++++...+++|.+
T Consensus       244 ~~~~~~v~v~D~~t~~~~~~i~~~g~----------------~-~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v  306 (543)
T 1nir_A          244 AYWPPQFAIMDGETLEPKQIVSTRGM----------------T-VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  306 (543)
T ss_dssp             EEESSEEEEEETTTCCEEEEEECCEE----------------C-SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             EccCCeEEEEeccccccceeecccCc----------------c-cCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence            85 79999999887654432221110                0 000001333 78999999988888889999999999


Q ss_pred             EeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe----ecCCeeEEEeCCCCCCE
Q 010748          294 WDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWDPHAEHS  367 (502)
Q Consensus       294 wd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~~  367 (502)
                      ||+.+.+.+.  .+. +...+..+.|+|++..+++++..+++|.+||+.+++.......    |.+....+ ++|++..+
T Consensus       307 vd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~  384 (543)
T 1nir_A          307 VNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPV  384 (543)
T ss_dssp             EECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEE
T ss_pred             EEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccE
Confidence            9998876544  443 5677889999999933444555689999999998876543321    33333333 46765556


Q ss_pred             EEEEe-CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-------CCCcEEEEECCCCCe
Q 010748          368 FVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-------TDKMVKLWDLSNNQP  439 (502)
Q Consensus       368 ~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-------~dg~i~vwd~~~~~~  439 (502)
                      ++++. .+++|.+||+.+.....  ...+.+.++..|...+..++++|++ ++|++++       .+++|.|||+.+.+.
T Consensus       385 ~~s~~~~d~~V~v~d~~~~~~~~--~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          385 WSTSHLGDGSISLIGTDPKNHPQ--YAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTT--TBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             EEeccCCCceEEEEEeCCCCCch--hcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCCC
Confidence            66665 68999999998721100  0037788999999999999999998 8888876       267999999998874


Q ss_pred             e-EEEE------ecCCCCcEEEEEEcCCCCcEEEEEe----CCCcEEEEECCCCcccccccc
Q 010748          440 S-CIAS------RNPKAGAVFSVAFSEDSPFVLAIGG----SKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       440 ~-~~~~------~~~~~~~v~~~~~spd~~~ll~sg~----~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      . ....      +..+...+..+.|+|+|.+++++..    .++.|.|||..+++++.++-.
T Consensus       462 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          462 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             CCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             CeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence            3 1211      1345678999999999998666543    479999999999998866553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=3.1e-23  Score=213.09  Aligned_cols=287  Identities=13%  Similarity=0.110  Sum_probs=209.5

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEe
Q 010748          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW  224 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iw  224 (502)
                      ..++|++.++++++.++     .|.+|+....   .+.  ........+.++.+       +|+|++|++++.++.|++|
T Consensus       143 ~~~~p~~~~~vs~~~d~-----~V~v~D~~t~---~~~--~~i~~g~~~~~v~~-------spdg~~l~v~~~d~~V~v~  205 (543)
T 1nir_A          143 NDLDLPNLFSVTLRDAG-----QIALVDGDSK---KIV--KVIDTGYAVHISRM-------SASGRYLLVIGRDARIDMI  205 (543)
T ss_dssp             SCCCGGGEEEEEEGGGT-----EEEEEETTTC---CEE--EEEECSTTEEEEEE-------CTTSCEEEEEETTSEEEEE
T ss_pred             cccCCCCEEEEEEcCCC-----eEEEEECCCc---eEE--EEEecCcccceEEE-------CCCCCEEEEECCCCeEEEE
Confidence            35889998888887776     5555665543   222  11111111344444       8999999999999999999


Q ss_pred             eC--CCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEecc----CCCcEEEEEe-cCCcEEEEeCC
Q 010748          225 DL--DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK----EFRNILASAS-ADKQVKIWDVA  297 (502)
Q Consensus       225 dl--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~~l~sgs-~dg~v~vwd~~  297 (502)
                      |+  .+...+.                           .+. +...+.+++|+|    +++ +|++++ .+++|.+||..
T Consensus       206 D~~~~t~~~~~---------------------------~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          206 DLWAKEPTKVA---------------------------EIK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             ETTSSSCEEEE---------------------------EEE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETT
T ss_pred             ECcCCCCcEEE---------------------------EEe-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEecc
Confidence            99  4322111                           111 345679999999    854 677766 58999999999


Q ss_pred             CCeeeEeecc----------CC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCCC
Q 010748          298 AGKCNLTLEH----------HT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       298 ~~~~~~~~~~----------h~-~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~  365 (502)
                      +++++.++..          |. ..+.++.++|++..++++...++.|.+||+.+.+... ....+...+..+.|+|++.
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence            9999888754          22 3789999999887888888899999999998765433 2334566788999999987


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec----cCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCC--
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ--  438 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~--  438 (502)
                      .+++++..++.|.+||+.++         +.+..+..    |.+....+ ++|+++.++++++ .|++|.|||+.+..  
T Consensus       337 ~l~va~~~~~~v~v~D~~tg---------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~  406 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDR---------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP  406 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTT---------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred             EEEEEecCCCeEEEEECCCC---------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc
Confidence            55566667899999999987         55555553    55444443 5777547777776 58999999998711  


Q ss_pred             ---eeEEEEecCCCCcEEEEEEcCCCCcEEEEEe-------CCCcEEEEECCCCcccccc
Q 010748          439 ---PSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-------SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       439 ---~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~-------~dg~i~vwd~~~~~~~~~~  488 (502)
                         ..++.++..|.+.+..++|+|++++ |++++       .+++|.|||+.+++.+.+.
T Consensus       407 ~~~~~~v~~l~~~g~~~~~v~~~pdg~~-l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~  465 (543)
T 1nir_A          407 QYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDAKYQV  465 (543)
T ss_dssp             TTBTSEEEEEECSCSCCCCEECCTTCCE-EEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             hhcCeEEEEEEcCCCCceEEEcCCCCCc-EEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence               2377888888888899999999996 66665       2679999999999877444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=3e-23  Score=200.52  Aligned_cols=284  Identities=10%  Similarity=0.139  Sum_probs=182.4

Q ss_pred             CceEEEE-EecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-CcEEEeeCCC
Q 010748          151 DAVIVCA-RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-PAIEIWDLDV  228 (502)
Q Consensus       151 ~~~l~~~-~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d-g~I~iwdl~~  228 (502)
                      +++|+++ +.++   .+.+|.++...    .+...........|.+++|       +|+|++|++++.+ +.|.+|+++.
T Consensus         4 ~~~l~~~~~~~~---~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~v~~~~~~~   69 (343)
T 1ri6_A            4 KQTVYIASPESQ---QIHVWNLNHEG----ALTLTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLAYRIAP   69 (343)
T ss_dssp             EEEEEEEEGGGT---EEEEEEECTTS----CEEEEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eEEEEEeCCCCC---eEEEEEECCCC----cEEEeeeEecCCCCceEEE-------CCCCCEEEEeecCCCeEEEEEecC
Confidence            3455555 4444   56666665322    2222222233445667777       8999999888876 9999999972


Q ss_pred             CCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC---CCCeeeEee
Q 010748          229 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV---AAGKCNLTL  305 (502)
Q Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~---~~~~~~~~~  305 (502)
                      ....                       ......+..+ ..+.+++|+|++..+++++..++.|.+||+   .+.+.+..+
T Consensus        70 ~~~~-----------------------~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  125 (343)
T 1ri6_A           70 DDGA-----------------------LTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV  125 (343)
T ss_dssp             TTCC-----------------------EEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE
T ss_pred             CCCc-----------------------eeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc
Confidence            1100                       0001111122 378999999996544445555889999999   444555555


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEecCC-CCCccc-----eEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748          306 EHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARI-STHSGF-----KWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       306 ~~h~~~v~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~-----~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~  378 (502)
                      ..+ ..+.+++|+|++ ++|++++ .++.|.+||+.+ +.....     .......+..++|+|++..+++++..++.|.
T Consensus       126 ~~~-~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~  203 (343)
T 1ri6_A          126 EGL-DGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVD  203 (343)
T ss_dssp             CCC-TTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCC-CCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEE
Confidence            543 468899999999 6666666 899999999987 432211     1122346889999999875556666899999


Q ss_pred             EEECCCCCCCCCCCCCccceEEec------cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC--CCCeeEEEEecCCCC
Q 010748          379 GFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NNQPSCIASRNPKAG  450 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~--~~~~~~~~~~~~~~~  450 (502)
                      +|++......     .........      ....+.+++|+|++..+++++..++.|++|++.  ++....+.....+..
T Consensus       204 ~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  278 (343)
T 1ri6_A          204 VWELKDPHGN-----IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ  278 (343)
T ss_dssp             EEESSCTTSC-----CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS
T ss_pred             EEEecCCCCc-----EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc
Confidence            9999642110     011222221      123567899999984444466679999999998  444444444544444


Q ss_pred             cEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                       +.+++|+|+++++++++..++.|.+|++.
T Consensus       279 -~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          279 -PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             -CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             -cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence             88999999999755544478999999554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=5.8e-23  Score=204.53  Aligned_cols=230  Identities=12%  Similarity=0.107  Sum_probs=170.9

Q ss_pred             CCEEEEecCC------CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          209 GNFMAVGSME------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       209 ~~~la~g~~d------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +..++.++.+      +.|++||++...                            ...+.+|...|.+++|+|+ +.+|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------------------------~~~l~~~~~~v~~~~~Spd-g~~l  193 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN----------------------------QFVVHRSPQPLMSPAWSPD-GSKL  193 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS----------------------------CEEEEEESSCEEEEEECTT-SSEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC----------------------------CEEEeCCCCcceeeEEcCC-CCEE
Confidence            5666666554      799999997321                            1133468889999999999 5588


Q ss_pred             EEEecCC---cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEE-EEeCCCc--EEEEecCCCCCccceEeecCCee
Q 010748          283 ASASADK---QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL-SGSFDRS--VVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       283 ~sgs~dg---~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~  356 (502)
                      ++++.++   .|++||+.++++. .+..|...+.+++|+|++ +.|+ +++.++.  |++||++++... ....+...+.
T Consensus       194 a~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~  270 (415)
T 2hqs_A          194 AYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNT  270 (415)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEE
T ss_pred             EEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCccc
Confidence            8888875   9999999998875 466688899999999999 5555 7777665  999999886653 3445677899


Q ss_pred             EEEeCCCCCCEEEEEe-CCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC---CcEE
Q 010748          357 SLAWDPHAEHSFVVSL-EDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD---KMVK  430 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~-~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d---g~i~  430 (502)
                      +++|+|++. .+++++ .++  .|++||+.++          ....+..|...+.+++|+|++ .+|++++.+   ..|+
T Consensus       271 ~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~----------~~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~  338 (415)
T 2hqs_A          271 EPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGG----------APQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIA  338 (415)
T ss_dssp             EEEECTTSS-EEEEEECTTSSCEEEEEETTSS----------CCEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEE
T ss_pred             ceEECCCCC-EEEEEECCCCCcEEEEEECCCC----------CEEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEE
Confidence            999999987 455554 455  6777788765          234455677789999999998 777776654   5799


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC---cEEEEECCCCcccccc
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG---KLEIWDTLSDAGISNR  488 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg---~i~vwd~~~~~~~~~~  488 (502)
                      +||+.+++.   ..+..+. .+.+++|+|++++ |++++.++   .|++||+.++ .+.++
T Consensus       339 ~~d~~~~~~---~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~g~-~~~~l  393 (415)
T 2hqs_A          339 KQDLATGGV---QVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTDGR-FKARL  393 (415)
T ss_dssp             EEETTTCCE---EECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETTSC-CEEEC
T ss_pred             EEECCCCCE---EEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECCCC-cEEEe
Confidence            999998873   3344443 7999999999995 66666655   7999998743 34433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.8e-22  Score=193.09  Aligned_cols=283  Identities=8%  Similarity=0.009  Sum_probs=189.0

Q ss_pred             ccccCCCceEE-EEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-CCcEE
Q 010748          145 MTINPNDAVIV-CARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIE  222 (502)
Q Consensus       145 ~~~~p~~~~l~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~-dg~I~  222 (502)
                      ..|.++++.++ ++..++     .|++|+...+   .+....... ...+ +++|       +|+|++|++++. ++.|.
T Consensus         3 ~~~~~~~~~~~v~~~~~~-----~v~~~d~~~~---~~~~~~~~~-~~~~-~~~~-------s~dg~~l~~~~~~~~~i~   65 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLR-----RISFFSTDTL---EILNQITLG-YDFV-DTAI-------TSDCSNVVVTSDFCQTLV   65 (331)
T ss_dssp             ----CCCCEEEEEEGGGT-----EEEEEETTTC---CEEEEEECC-CCEE-EEEE-------CSSSCEEEEEESTTCEEE
T ss_pred             eeEcCCCCEEEEEecCCC-----eEEEEeCccc---ceeeeEEcc-CCcc-eEEE-------cCCCCEEEEEeCCCCeEE
Confidence            34666666644 444444     6666665544   322111111 1222 5555       899997666655 88999


Q ss_pred             EeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCC---cEEEEeCCCC
Q 010748          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK---QVKIWDVAAG  299 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg---~v~vwd~~~~  299 (502)
                      +||+.+....                          ...+..+..++.+++|+|++ .+|+++..++   .|.+||+.++
T Consensus        66 ~~d~~~~~~~--------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~  118 (331)
T 3u4y_A           66 QIETQLEPPK--------------------------VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKN  118 (331)
T ss_dssp             EEECSSSSCE--------------------------EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTT
T ss_pred             EEECCCCcee--------------------------EEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCC
Confidence            9999764320                          11222344555559999995 4666555553   8999999999


Q ss_pred             eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCcc----ceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSG----FKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~----~~~~~~~~v~~v~~~~~~~~~~~~~~~d  374 (502)
                      +.+..+.. ...+.+++|+|++..+++++..++. |.+|++.......    ........+..++|+|++..+++++..+
T Consensus       119 ~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  197 (331)
T 3u4y_A          119 KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG  197 (331)
T ss_dssp             EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT
T ss_pred             CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC
Confidence            98888764 4457899999999556666677788 9999998644331    1223345689999999987566666778


Q ss_pred             CcEEEEECCCCCCCCCCCCCcc---ceEEeccCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCCeeEEEEecCC--
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQPSCIASRNPK--  448 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~sp~~~~~l-~t~s~dg~i~vwd~~~~~~~~~~~~~~~--  448 (502)
                      +.|++||+.++         ..   +..+.. ...+..++|+|++ ++| ++...++.|.+||+.+++...+..+..+  
T Consensus       198 ~~v~v~d~~~~---------~~~~~~~~~~~-~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  266 (331)
T 3u4y_A          198 NSIGILETQNP---------ENITLLNAVGT-NNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLL  266 (331)
T ss_dssp             TEEEEEECSST---------TSCEEEEEEEC-SSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCC
T ss_pred             CeEEEEECCCC---------cccceeeeccC-CCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceeeecccccccc
Confidence            99999999876         33   455553 4667899999998 644 4555678899999998875434433322  


Q ss_pred             --CC---cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          449 --AG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       449 --~~---~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                        ..   ....++|+|+++++++++..++.|.+||+....
T Consensus       267 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          267 IDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence              12   224589999999766777777899999997654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=5.5e-22  Score=197.49  Aligned_cols=268  Identities=15%  Similarity=0.040  Sum_probs=186.8

Q ss_pred             CccccccccccC--------------CCceEEEEEecCCc-ceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCC
Q 010748          138 DSEDLEDMTINP--------------NDAVIVCARNEDDV-SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCP  202 (502)
Q Consensus       138 ~~~~v~~~~~~p--------------~~~~l~~~~~~~~~-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  202 (502)
                      |...+..+.+++              .+..|+.++..... ..-.|++|+...... .....|.    ....+++|    
T Consensus       116 ~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l~~~~----~~v~~~~~----  186 (415)
T 2hqs_A          116 NKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVVHRSP----QPLMSPAW----  186 (415)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EEEEEES----SCEEEEEE----
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EEEeCCC----CcceeeEE----
Confidence            556677777775              15555555544211 012455555433211 2223332    23467777    


Q ss_pred             CCCCCCCCEEEEecCCC---cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748          203 LKDREKGNFMAVGSMEP---AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg---~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                         +|+|++||+++.++   .|++||+.++...                            .+..|...+.+++|+|++.
T Consensus       187 ---Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----------------------------~l~~~~~~~~~~~~spdg~  235 (415)
T 2hqs_A          187 ---SPDGSKLAYVTFESGRSALVIQTLANGAVR----------------------------QVASFPRHNGAPAFSPDGS  235 (415)
T ss_dssp             ---CTTSSEEEEEECTTSSCEEEEEETTTCCEE----------------------------EEECCSSCEEEEEECTTSS
T ss_pred             ---cCCCCEEEEEEecCCCcEEEEEECCCCcEE----------------------------EeecCCCcccCEEEcCCCC
Confidence               89999999999875   9999999754321                            2235777899999999965


Q ss_pred             cEEEEEecCCc--EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC-CC--cEEEEecCCCCCccceEeecCC
Q 010748          280 NILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DR--SVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       280 ~~l~sgs~dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~  354 (502)
                      .++++++.++.  |++||+.++++ ..+..|...+.+++|+|++ +.|++++. ++  .|.+||+.++.... ...+...
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~~~  312 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQ  312 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSE
T ss_pred             EEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEEE-EecCCCc
Confidence            44447777665  99999998876 5677788899999999999 66776665 45  67777888765432 2334567


Q ss_pred             eeEEEeCCCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC---cE
Q 010748          355 VESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MV  429 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg---~i  429 (502)
                      +.+++|+|++..+++++..  ++.|++||+.++         .. ..+..|. .+.+++|+|++ .+|++++.++   .|
T Consensus       313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---------~~-~~l~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l  380 (415)
T 2hqs_A          313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---------GV-QVLSSTF-LDETPSLAPNG-TMVIYSSSQGMGSVL  380 (415)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---------CE-EECCCSS-SCEEEEECTTS-SEEEEEEEETTEEEE
T ss_pred             ccCeEECCCCCEEEEEECcCCceEEEEEECCCC---------CE-EEecCCC-CcCCeEEcCCC-CEEEEEEcCCCccEE
Confidence            8899999998744444443  258999999875         22 3455554 89999999998 7788877766   79


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCc
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  463 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~  463 (502)
                      ++||+....   ...+..|.+.|.+++|+|.-.|
T Consensus       381 ~~~d~~g~~---~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          381 NLVSTDGRF---KARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             EEEETTSCC---EEECCCSSSEEEEEEECCCCCC
T ss_pred             EEEECCCCc---EEEeeCCCCCCcCCcccccccc
Confidence            999998654   5677888899999999997543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=2e-22  Score=216.08  Aligned_cols=294  Identities=9%  Similarity=0.089  Sum_probs=203.9

Q ss_pred             ccccccccccCCCceEEEEEe-cCCcceeEEEEEecCCCCCCCeeeeecccc------------------C--CCcceee
Q 010748          139 SEDLEDMTINPNDAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHHIII------------------P--AFPLCMA  197 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~------------------~--~~~~~~~  197 (502)
                      ...+.+++|+|+|++|++++. +++.....||+|+...+....+..++....                  .  ....++ 
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY-  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC-
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee-
Confidence            346889999999999999987 543334577777766542222222221110                  0  001233 


Q ss_pred             eecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC
Q 010748          198 WLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE  277 (502)
Q Consensus       198 ~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~  277 (502)
                            .|||+|++|++++. +.|++||+.++...                         ....+..|...+.+++|+|+
T Consensus       115 ------~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-------------------------~~~~l~~~~~~~~~~~~SPD  162 (741)
T 2ecf_A          115 ------QWSPDAQRLLFPLG-GELYLYDLKQEGKA-------------------------AVRQLTHGEGFATDAKLSPK  162 (741)
T ss_dssp             ------EECTTSSEEEEEET-TEEEEEESSSCSTT-------------------------SCCBCCCSSSCEEEEEECTT
T ss_pred             ------EECCCCCEEEEEeC-CcEEEEECCCCCcc-------------------------eEEEcccCCcccccccCCCC
Confidence                  34999999999986 99999999754100                         01123357788999999999


Q ss_pred             CCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCC----------------eEEEEEcCCCCcEEEEEeCCC---------
Q 010748          278 FRNILASASADKQVKIWDVAAGKCNLTLEHHTDK----------------VQAVAWNHHSPQILLSGSFDR---------  332 (502)
Q Consensus       278 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~----------------v~~l~~~~~~~~~l~s~s~dg---------  332 (502)
                      + .+|++++ ++.|++||+.+++.......+...                +.++.|+|+| +.|++++.++         
T Consensus       163 G-~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~  239 (741)
T 2ecf_A          163 G-GFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRY  239 (741)
T ss_dssp             S-SEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEE
T ss_pred             C-CEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecC
Confidence            4 5787777 469999999998876655544432                4789999999 7777776665         


Q ss_pred             ------------------------cEEEEecCC-CCCccceE--eecCCeeEEEeCCCCCCEEEEEe----CCCcEEEEE
Q 010748          333 ------------------------SVVMKDARI-STHSGFKW--AVAADVESLAWDPHAEHSFVVSL----EDGTIKGFD  381 (502)
Q Consensus       333 ------------------------~i~iwd~~~-~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~~~----~dg~v~i~d  381 (502)
                                              .|.+||+.+ ++......  .+...+..++| |++..+++++.    .++.|++||
T Consensus       240 ~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d  318 (741)
T 2ecf_A          240 EVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT  318 (741)
T ss_dssp             EECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred             CCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence                                    788999987 66543222  24567899999 99874444433    356799999


Q ss_pred             CCCCCCCCCCCCCccceEEeccCC----CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE-E
Q 010748          382 IRTAKSDPDSTSQQSSFTLHAHDK----AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV-A  456 (502)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~  456 (502)
                      +.++         .....+..+..    .+.+++|+|++ +++++++.+|.++||.+.....  ...+..+...|.++ .
T Consensus       319 ~~~g---------~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~~~  386 (741)
T 2ecf_A          319 LASN---------QQRVLAHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK--AAALTHGNWSVDELLA  386 (741)
T ss_dssp             TTTC---------CEEEEEEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC--EEESCCSSSCEEEEEE
T ss_pred             CCCC---------ceEEEEEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC--eeeeeecceEEEeEeE
Confidence            9886         34444444443    45789999998 6999999999888887763222  45566677788887 5


Q ss_pred             EcCCCCcEEEEEeCCC--cEEEEECCC
Q 010748          457 FSEDSPFVLAIGGSKG--KLEIWDTLS  481 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg--~i~vwd~~~  481 (502)
                      |+|+++.++++++.++  .++||++..
T Consensus       387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          387 VDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             EeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            9999997666777666  899999864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=8.3e-21  Score=184.22  Aligned_cols=290  Identities=10%  Similarity=0.086  Sum_probs=186.2

Q ss_pred             eEEEEEec-CCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC---CCcEEEeeCCC
Q 010748          153 VIVCARNE-DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM---EPAIEIWDLDV  228 (502)
Q Consensus       153 ~l~~~~~~-~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~---dg~I~iwdl~~  228 (502)
                      .+++|+.. +....+.+|.++...+   .+...........|..++|       +|+|+ |++++.   ++.|++|++..
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg---~~~~~~~~~~~~~p~~~a~-------spdg~-l~~~~~~~~~~~v~~~~~~~   72 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAK---TLTNDGLLAATQNPTYLAL-------SAKDC-LYSVDKEDDEGGIAAWQIDG   72 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTT---EEEEEEEEEECSCCCCEEE-------CTTCE-EEEEEEETTEEEEEEEEEET
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCC---eEEEeeeeeccCCcceEEE-------ccCCe-EEEEEecCCCceEEEEEecC
Confidence            34555432 2234678888887654   3332222222344555655       89999 554443   68999999954


Q ss_pred             CCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe-cCCcEEEEeCCC-C--eeeEe
Q 010748          229 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAA-G--KCNLT  304 (502)
Q Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~dg~v~vwd~~~-~--~~~~~  304 (502)
                      +..                         .....+..+...+..++|+|++. +|++++ .+++|.+|++.. +  +.+..
T Consensus        73 g~~-------------------------~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~  126 (347)
T 3hfq_A           73 QTA-------------------------HKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDT  126 (347)
T ss_dssp             TEE-------------------------EEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred             CcE-------------------------EEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecce
Confidence            221                         11111224667889999999954 666666 789999999962 2  33333


Q ss_pred             ecc---------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE----eecCCeeEEEeCCCCCCEEEEE
Q 010748          305 LEH---------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       305 ~~~---------h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~v~~v~~~~~~~~~~~~~  371 (502)
                      +..         +...+.+++|+|++ +++++...++.|.+|++..........    .....+..++|+|++..+++++
T Consensus       127 ~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~  205 (347)
T 3hfq_A          127 VQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG  205 (347)
T ss_dssp             EECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             eecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe
Confidence            321         12348899999999 577777778999999998322222111    1233678899999987566667


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCccceEEeccC------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CCeeEEEE
Q 010748          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIAS  444 (502)
Q Consensus       372 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~-~~~~~~~~  444 (502)
                      ..++.|.+|++......     ...+..+....      ..+..++|+|++..+++++..++.|.+|++.. +....+..
T Consensus       206 ~~~~~v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          206 ELSSQIASLKYDTQTGA-----FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ  280 (347)
T ss_dssp             TTTTEEEEEEEETTTTE-----EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred             CCCCEEEEEEecCCCCc-----eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence            78899999998752100     11222333322      34888999999833446677799999999973 34445555


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE--CCCCccc
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD--TLSDAGI  485 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd--~~~~~~~  485 (502)
                      ...+...+..++|+|+++++++++..++.|.+|+  ..+++..
T Consensus       281 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          281 ISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            6666667889999999997555444568999994  4555543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2.2e-21  Score=193.92  Aligned_cols=218  Identities=12%  Similarity=0.106  Sum_probs=150.4

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC------CCCCeee---eeccccCCCcceeeeecCCCCCCCCC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG------GDPNLYV---HHHIIIPAFPLCMAWLDCPLKDREKG  209 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~------~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~s~~~  209 (502)
                      ...++.++++|++.+|++++.++    +.||.......      ....+..   ......+..+.+++|       +|+|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------spdg  104 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG----LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL-------SCDN  104 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE----EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE-------CTTS
T ss_pred             CCCccEEEEecCCCEEEEECCCE----EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE-------cCCC
Confidence            34689999999999999987653    45543321100      0001111   011223444567777       8999


Q ss_pred             CEEE----EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          210 NFMA----VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       210 ~~la----~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++||    +|+.|+.|+|||+.+.....                ....+.......+.+|...|.+++|+|+.+++|++|
T Consensus       105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~----------------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A          105 LTLSACMMSSEYGSIIAFFDVRTFSNEA----------------KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             CEEEEEEEETTTEEEEEEEEHHHHHCTT----------------CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             CEEEEEEeccCCCceEEEEEccccccCC----------------cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            9999    78899999999986420000                000001112334567999999999999867899999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee-------cCCeeEE
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-------AADVESL  358 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v  358 (502)
                      +.||+|++||++++..+....+|...|++++|+|++ .+|++|+.||+|++||++ .........+       ...+.++
T Consensus       169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence            999999999999998777777789999999999998 899999999999999998 3222211111       2378999


Q ss_pred             EeCCCCCCEEEEEeCCCc------EEEEECCCC
Q 010748          359 AWDPHAEHSFVVSLEDGT------IKGFDIRTA  385 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~dg~------v~i~d~~~~  385 (502)
                      +|++++..+++.+..+|.      +++|++++.
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            999865422333444433      899999875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.6e-20  Score=182.17  Aligned_cols=286  Identities=11%  Similarity=0.063  Sum_probs=195.1

Q ss_pred             ccccccccccCCCceEEEEEecCC--cceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE-Ee
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDD--VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VG  215 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~--~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-~g  215 (502)
                      ...+..+.|+|+++.|++++..+.  ...-.|++|+....   .+.  ........|.++.|       +|+|++++ ++
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~---~~~--~~~~~~~~~~~~~~-------s~dg~~l~v~~  107 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL---EVT--QAIHNDLKPFGATI-------NNTTQTLWFGN  107 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC---CEE--EEEEESSCCCSEEE-------ETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC---eEE--EEEecCCCcceEEE-------CCCCCEEEEEe
Confidence            345778999999999988875421  00126777776554   222  11223444566666       78888555 55


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe--cCCcEEE
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVKI  293 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs--~dg~v~v  293 (502)
                      ..++.|.+||+.++........-.+               ..   ........+.+++|+|+++ ++++++  .++.|.+
T Consensus       108 ~~~~~v~~~d~~~~~~~~~~~~~~~---------------~~---~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A          108 TVNSAVTAIDAKTGEVKGRLVLDDR---------------KR---TEEVRPLQPRELVADDATN-TVYISGIGKESVIWV  168 (353)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESCCC---------------CC---CSSCCCCEEEEEEEETTTT-EEEEEEESSSCEEEE
T ss_pred             cCCCEEEEEeCCCCeeEEEEecCCC---------------cc---ccccCCCCCceEEECCCCC-EEEEEecCCCceEEE
Confidence            5679999999986543322111000               00   0001112378899999965 444444  5789999


Q ss_pred             EeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe----ecCCeeEEEeCCCCCCEEE
Q 010748          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~~~~  369 (502)
                      ||+.+++.+..+..+...+.++.|+|++ ++|++++.++.|.+||+.+.+.......    +...+..++|+|++..+++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  247 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI  247 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence            9999999998887666778999999999 7888888999999999988765543222    2445778999999875555


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  449 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~  449 (502)
                      +...++.|.+||+.++         ..+..+..+.  ..+++|+|++..++++...++.|.+||+.+++.  +..+.. .
T Consensus       248 ~~~~~~~v~~~d~~~~---------~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~-~  313 (353)
T 3vgz_A          248 TDSKAAEVLVVDTRNG---------NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV--VKTFDT-P  313 (353)
T ss_dssp             EESSSSEEEEEETTTC---------CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEEEC-C
T ss_pred             EeCCCCEEEEEECCCC---------cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE--EEEEec-C
Confidence            5566699999999876         4455554433  267999999844555665799999999998874  333333 3


Q ss_pred             CcEEEEEEcCCCCcEEEEEeC
Q 010748          450 GAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       450 ~~v~~~~~spd~~~ll~sg~~  470 (502)
                      ..+.+++|+|++++++++...
T Consensus       314 ~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          314 THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             SEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCeEEEcCCCCEEEEEEcc
Confidence            468999999999965555443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=1.9e-21  Score=183.19  Aligned_cols=234  Identities=12%  Similarity=0.064  Sum_probs=168.2

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCC-CCCcCcceecCCcchhhhhhccccCCcccccccccCc-ccc
Q 010748          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV-IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDS  268 (502)
Q Consensus       191 ~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~  268 (502)
                      ....++.|       +|+|++|++++ ++.|++||+.+ .....                           ....| ...
T Consensus        42 ~~v~~~~~-------spdg~~l~~~~-~~~i~~~d~~~~~~~~~---------------------------~~~~~~~~~   86 (297)
T 2ojh_A           42 ELFEAPNW-------SPDGKYLLLNS-EGLLYRLSLAGDPSPEK---------------------------VDTGFATIC   86 (297)
T ss_dssp             SCCEEEEE-------CTTSSEEEEEE-TTEEEEEESSSCCSCEE---------------------------CCCTTCCCB
T ss_pred             cceEeeEE-------CCCCCEEEEEc-CCeEEEEeCCCCCCceE---------------------------ecccccccc
Confidence            34467777       89999999987 78999999975 32211                           11123 477


Q ss_pred             eeeEEeccCCCcEEEEEe--cCCcEEE--EeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-
Q 010748          269 VLGLAWNKEFRNILASAS--ADKQVKI--WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-  343 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs--~dg~v~v--wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-  343 (502)
                      |.+++|+|+ +.+|++++  .++.+.|  |++.+++ ...+..+ ..+.+++|+|++..++++++.++.+.+|++.... 
T Consensus        87 ~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           87 NNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             CSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred             ccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence            899999999 45788887  3344455  4555554 3445433 3489999999994455588899999999975432 


Q ss_pred             CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE
Q 010748          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .......+...+.+++|+|++..+++++..++.+++|++...        ......+..|...+.+++|+|++ .+|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~  234 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--------GSSVERITDSAYGDWFPHPSPSG-DKVVFV  234 (297)
T ss_dssp             CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------SSCEEECCCCSEEEEEEEECTTS-SEEEEE
T ss_pred             cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--------CCCcEEEecCCcccCCeEECCCC-CEEEEE
Confidence            222334556789999999988754555556899999998743        24566677788889999999998 777777


Q ss_pred             eCC-----------CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748          424 STD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       424 s~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d  471 (502)
                      +.+           +.|++||+.+++...+.....|...+.+++|+|+++++++++..+
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            665           569999999887666666667778899999999999644444433

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=1.7e-20  Score=199.94  Aligned_cols=296  Identities=13%  Similarity=0.077  Sum_probs=195.8

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..|.+++|+|+ +.++++. ++     .||+|+...+   .+....  .....+.+++|       ||+|++||++ .++
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~-----~i~~~d~~~~---~~~~l~--~~~~~~~~~~~-------SpdG~~la~~-~~~  141 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QG-----GLVGFDMLAR---KVTYLF--DTNEETASLDF-------SPVGDRVAYV-RNH  141 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TT-----EEEEEETTTT---EEEEEE--CCTTCCTTCEE-------CTTSSEEEEE-ETT
T ss_pred             cCceeEEECCC-CeEEEEE-CC-----EEEEEECCCC---ceEEcc--CCcccccCCcC-------CCCCCEEEEE-ECC
Confidence            46899999999 6666654 34     6666665544   221111  01222344555       8999999995 679


Q ss_pred             cEEEeeCCC-----CCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe--------
Q 010748          220 AIEIWDLDV-----IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--------  286 (502)
Q Consensus       220 ~I~iwdl~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs--------  286 (502)
                      .|++|++.+     +..... ...+. ..          ...... ....+...+.+++|+|++ .+|++++        
T Consensus       142 ~i~v~~~~~~~~~~g~~~~~-~~~~~-~~----------~~~g~~-~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~  207 (706)
T 2z3z_A          142 NLYIARGGKLGEGMSRAIAV-TIDGT-ET----------LVYGQA-VHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKP  207 (706)
T ss_dssp             EEEEEECBCTTSCCCCCEES-CSCCB-TT----------EEESSC-CGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCC
T ss_pred             eEEEEecCcccccCCCcEEe-ccCCC-CC----------eEcccc-hhhhhcCCCceEEECCCC-CEEEEEEECCCCCce
Confidence            999999976     432210 00000 00          000000 111223346899999994 5777776        


Q ss_pred             -------------------------cCCcEEEEeCCCCeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeCCC-----cE
Q 010748          287 -------------------------ADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDR-----SV  334 (502)
Q Consensus       287 -------------------------~dg~v~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg-----~i  334 (502)
                                               .+..|++||+.+++......  .|...+.+++|+|++ +.|++++.++     .|
T Consensus       208 ~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v  286 (706)
T 2z3z_A          208 TPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKV  286 (706)
T ss_dssp             EEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEE
T ss_pred             EEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEE
Confidence                                     44679999999988655442  467789999999999 7788777665     89


Q ss_pred             EEEecCCCCCccceEe-e-cC---CeeEEEeCC--CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748          335 VMKDARISTHSGFKWA-V-AA---DVESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       335 ~iwd~~~~~~~~~~~~-~-~~---~v~~v~~~~--~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      .+||+.++........ . ..   .+.+++|+|  ++. +++++..+|.+++|.+...        ...+..+..|...+
T Consensus       287 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~--------~~~~~~l~~~~~~v  357 (706)
T 2z3z_A          287 NAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTT--------GRLIRQVTKGEWEV  357 (706)
T ss_dssp             EEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETT--------SCEEEECCCSSSCE
T ss_pred             EEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECC--------CCEEEecCCCCeEE
Confidence            9999988733322222 1 21   246789999  876 7888888999999987632        25566677777778


Q ss_pred             eE-EEEcCCCCCEEEEEeCCC----cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEEEEC
Q 010748          408 CT-ISYNPLVPNLLATGSTDK----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDT  479 (502)
Q Consensus       408 ~~-l~~sp~~~~~l~t~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d---g~i~vwd~  479 (502)
                      .. ++|+|++..++++++.++    .|..||+.++...   .+ .+...+.+++|+|++++++++++..   +.|++||+
T Consensus       358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~---~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK---DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE---ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce---ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            77 799999844445555555    6777788776522   22 2566799999999999755554444   56999999


Q ss_pred             CCCc
Q 010748          480 LSDA  483 (502)
Q Consensus       480 ~~~~  483 (502)
                      .+++
T Consensus       434 ~~~~  437 (706)
T 2z3z_A          434 GKGS  437 (706)
T ss_dssp             SSCE
T ss_pred             CCCe
Confidence            8876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=4.3e-21  Score=180.79  Aligned_cols=228  Identities=10%  Similarity=0.031  Sum_probs=168.1

Q ss_pred             EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      .++.++.|++||+.+...                            ..+..|...|.+++|+|+ +.+|++++ ++.|++
T Consensus        17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~   66 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYR   66 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE----------------------------EEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEE
T ss_pred             CCCcceeEEEEeCCCCce----------------------------eeeccCCcceEeeEECCC-CCEEEEEc-CCeEEE
Confidence            356789999999975321                            122357889999999999 45787776 789999


Q ss_pred             EeCCC-CeeeEeeccC-CCCeEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEE
Q 010748          294 WDVAA-GKCNLTLEHH-TDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       294 wd~~~-~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~  369 (502)
                      ||+.+ ++....+..| ...+.+++|+|++ ++|++++  .++...||.+...............+..++|+|++..+++
T Consensus        67 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           67 LSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTY  145 (297)
T ss_dssp             EESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEE
T ss_pred             EeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEE
Confidence            99999 8777766655 4788999999999 7888888  3455666655432222223334445889999999876666


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECC-CCCeeEEEEecC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS-NNQPSCIASRNP  447 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~-~~~~~~~~~~~~  447 (502)
                      ++..++.+++|++...        ......+..|...+.+++|+|++ .+|++++ .++.++||++. ...  ....+..
T Consensus       146 ~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~  214 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDID--------SGVETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGS--SVERITD  214 (297)
T ss_dssp             EEEETTEEEEEEEETT--------TCCEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS--CEEECCC
T ss_pred             EECCCCceEEEEEECC--------CCcceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCC--CcEEEec
Confidence            8888999999997543        13455667788899999999998 6555554 68999999886 333  3455666


Q ss_pred             CCCcEEEEEEcCCCCcEEEEEeCC-----------CcEEEEECCCCcc
Q 010748          448 KAGAVFSVAFSEDSPFVLAIGGSK-----------GKLEIWDTLSDAG  484 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~ll~sg~~d-----------g~i~vwd~~~~~~  484 (502)
                      +...+.+++|+|++++ |++++.+           +.|++||+.+++.
T Consensus       215 ~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             CSEEEEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             CCcccCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            7788999999999996 5555544           5699999988765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=7e-20  Score=178.73  Aligned_cols=294  Identities=10%  Similarity=0.121  Sum_probs=185.1

Q ss_pred             cccCCCceEEEEEecC-CcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC----Cc
Q 010748          146 TINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME----PA  220 (502)
Q Consensus       146 ~~~p~~~~l~~~~~~~-~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d----g~  220 (502)
                      ...+...++++|+... ....+.+|.++...+   .+...... ....|..++|       +|+|++|++++.+    +.
T Consensus         8 ~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g---~~~~~~~~-~~~~p~~l~~-------spdg~~l~~~~~~~~~~~~   76 (361)
T 3scy_A            8 STTDSELTMLVGTYTSGNSKGIYTFRFNEETG---ESLPLSDA-EVANPSYLIP-------SADGKFVYSVNEFSKDQAA   76 (361)
T ss_dssp             CGGGGEEEEEEEECCSSSCCEEEEEEEETTTC---CEEEEEEE-ECSCCCSEEE-------CTTSSEEEEEECCSSTTCE
T ss_pred             hhCCCceEEEEEeccCCCCCCEEEEEEeCCCC---CEEEeecc-cCCCCceEEE-------CCCCCEEEEEEccCCCCCc
Confidence            3445556677775432 334678888876655   33332222 3444556666       8999999998875    79


Q ss_pred             EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~  300 (502)
                      |.+|+++.....                       .........+......+++  +++.++++...++.|.+|++....
T Consensus        77 v~~~~~~~~~g~-----------------------~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g  131 (361)
T 3scy_A           77 VSAFAFDKEKGT-----------------------LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDG  131 (361)
T ss_dssp             EEEEEEETTTTE-----------------------EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred             EEEEEEeCCCCc-----------------------EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCC
Confidence            999998642110                       0011111224456777787  544344444468899999997543


Q ss_pred             eeEee------cc--------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC------c-------cceEeecC
Q 010748          301 CNLTL------EH--------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------S-------GFKWAVAA  353 (502)
Q Consensus       301 ~~~~~------~~--------h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~-------~~~~~~~~  353 (502)
                      .+..+      .+        +...+.+++|+|++..+++++..++.|.+|++.....      .       ........
T Consensus       132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  211 (361)
T 3scy_A          132 ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS  211 (361)
T ss_dssp             CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC
T ss_pred             cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC
Confidence            32211      11        2234688999999933445555689999999876542      1       11123345


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe---ccCCCeeEEEEcCCCCCEEEEEeC--CCc
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGST--DKM  428 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~--dg~  428 (502)
                      .+..++|+|++..+++++..++.|.+|++.++.       ...+..+.   .+......++|+|++ ++|+++..  ++.
T Consensus       212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~-------~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~  283 (361)
T 3scy_A          212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM-------LDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADG  283 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTCEEEEEEEETTE-------EEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCE
T ss_pred             CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc-------eEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCE
Confidence            688999999987444444478999999998541       12223332   233456899999998 66655554  589


Q ss_pred             EEEEECC--CCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCcc
Q 010748          429 VKLWDLS--NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT--LSDAG  484 (502)
Q Consensus       429 i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~--~~~~~  484 (502)
                      |.+|++.  +++...+..... ...+.+++|+|+++++++++..++.|.+|.+  .+++.
T Consensus       284 i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          284 VAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             EEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence            9999996  455444444444 4567899999999975555547789999655  45544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=5.2e-20  Score=177.62  Aligned_cols=278  Identities=10%  Similarity=0.101  Sum_probs=178.4

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+..++|+|++++|++++.++  ..+.+|.++...+   .+...........|.+++|       +|++++|++++.
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~--~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------s~dg~~l~~~~~  103 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDG---ALTFAAESALPGSLTHIST-------DHQGQFVFVGSY  103 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTC---CEEEEEEEECSSCCSEEEE-------CTTSSEEEEEET
T ss_pred             cCCCCceEEECCCCCEEEEeecCC--CeEEEEEecCCCC---ceeeccccccCCCCcEEEE-------cCCCCEEEEEec
Confidence            345688899999999998888653  3667777763333   3332222333445667777       799998876654


Q ss_pred             -CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe-cCCcEEEEe
Q 010748          218 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWD  295 (502)
Q Consensus       218 -dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~dg~v~vwd  295 (502)
                       ++.|.+|++..+...                        ...... .....+.+++|+|++. +|++++ .++.|++||
T Consensus       104 ~~~~i~~~d~~~~~~~------------------------~~~~~~-~~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPV------------------------GVVDVV-EGLDGCHSANISPDNR-TLWVPALKQDRICLFT  157 (343)
T ss_dssp             TTTEEEEEEEETTEEE------------------------EEEEEE-CCCTTBCCCEECTTSS-EEEEEEGGGTEEEEEE
T ss_pred             CCCeEEEEECCCCccc------------------------cccccc-cCCCCceEEEECCCCC-EEEEecCCCCEEEEEE
Confidence             789999998421110                        011111 1234588999999955 555555 899999999


Q ss_pred             CCC-CeeeE----eecc-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC--CCCccce-Ee-e------cCCeeEEE
Q 010748          296 VAA-GKCNL----TLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGFK-WA-V------AADVESLA  359 (502)
Q Consensus       296 ~~~-~~~~~----~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~~~-~~-~------~~~v~~v~  359 (502)
                      +.+ ++...    .+.. ....+.+++|+|++..+++++..++.|.+|++..  +...... .. .      ...+..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  237 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  237 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence            987 65432    2222 3457889999999943445555899999999964  2221111 11 1      12466899


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEE--ECCC
Q 010748          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLW--DLSN  436 (502)
Q Consensus       360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vw--d~~~  436 (502)
                      |+|++..+++++..++.|.+|++.....     ....+..+..+.. +.+++|+|++ .+|++++ .++.|.+|  |..+
T Consensus       238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          238 ITPDGRHLYACDRTASLITVFSVSEDGS-----VLSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSC-----CEEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEETTT
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEcCCCC-----ceEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEcCCC
Confidence            9999875555666899999999983210     0134444444444 8999999998 6666666 68999999  4446


Q ss_pred             CCeeEEEEecCCCCcEEEEEEcCCC
Q 010748          437 NQPSCIASRNPKAGAVFSVAFSEDS  461 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~  461 (502)
                      ++...+..+... ....+++|.|+.
T Consensus       311 g~~~~~~~~~~g-~~p~~i~~~~~~  334 (343)
T 1ri6_A          311 GLLHEKGRYAVG-QGPMWVVVNAHE  334 (343)
T ss_dssp             TEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred             ceeeEccccccC-CCCeeEEEEccc
Confidence            654444444432 335566666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1.9e-20  Score=180.17  Aligned_cols=243  Identities=9%  Similarity=0.078  Sum_probs=174.4

Q ss_pred             CCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      .++ +..+++++.++.|++||+.++.....                           ...+...+ +++|+|++..++++
T Consensus         6 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~---------------------------~~~~~~~~-~~~~s~dg~~l~~~   57 (331)
T 3u4y_A            6 QTTSNFGIVVEQHLRRISFFSTDTLEILNQ---------------------------ITLGYDFV-DTAITSDCSNVVVT   57 (331)
T ss_dssp             -CCCCEEEEEEGGGTEEEEEETTTCCEEEE---------------------------EECCCCEE-EEEECSSSCEEEEE
T ss_pred             cCCCCEEEEEecCCCeEEEEeCcccceeee---------------------------EEccCCcc-eEEEcCCCCEEEEE
Confidence            344 45577888899999999976433221                           11234455 99999996545555


Q ss_pred             EecCCcEEEEeCCCCee-eEeeccCCCCeEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCccceEeecCCeeEEEe
Q 010748          285 ASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDR---SVVMKDARISTHSGFKWAVAADVESLAW  360 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~v~~  360 (502)
                      +..++.|.+||+.+++. ...+..+..+..+++|+|++ ++|+++..++   .|.+||+.+.+... .......+.+++|
T Consensus        58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~  135 (331)
T 3u4y_A           58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFIS-TIPIPYDAVGIAI  135 (331)
T ss_dssp             ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEE-EEECCTTEEEEEE
T ss_pred             eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEE-EEECCCCccceEE
Confidence            55589999999999987 77777676666669999999 7777555553   89999998876544 3455667899999


Q ss_pred             CCCCCCEEEEEeCCCc-EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          361 DPHAEHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       361 ~~~~~~~~~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      +|++..+++++..++. |.+|++......     .........+......++|+|++..+++++..++.|++||+.+++.
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVL-----FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCE-----EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcE-----eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            9998877777777788 999999854110     0000222234556899999999843556666789999999998874


Q ss_pred             -eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          440 -SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       440 -~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                       ..+..+.. ...+..++|+|++++++++...++.|.+||+.+++.
T Consensus       211 ~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          211 ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             CEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             cceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence             11334433 356788999999997666666678899999998876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=2.4e-20  Score=179.59  Aligned_cols=278  Identities=15%  Similarity=0.160  Sum_probs=188.8

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCC---CcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCC
Q 010748          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLD  227 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~  227 (502)
                      ++|++++.++     .|++|+....   .+.  ....++.   .|.+++|       +|+|+++ ++++.++.|.+||+.
T Consensus         2 ~~~v~~~~~~-----~v~~~d~~~~---~~~--~~~~~~~~~~~~~~~~~-------s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            2 DYILAPARPD-----KLVVIDTEKM---AVD--KVITIADAGPTPMVPMV-------APGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTT-----EEEEEETTTT---EEE--EEEECTTCTTCCCCEEE-------CTTSSEEEEEETTTTEEEEEETT
T ss_pred             cEEEEcCCCC-----eEEEEECCCC---cEE--EEEEcCCCCCCccceEE-------cCCCCEEEEEeCCCCeEEEEECC
Confidence            4677777776     6666665543   221  1122233   3566666       8999765 556667899999997


Q ss_pred             CCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe------------cCCcEEEEe
Q 010748          228 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQVKIWD  295 (502)
Q Consensus       228 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs------------~dg~v~vwd  295 (502)
                      ++........ +                     ....|...+.+++|+|++. +|++++            .++.|.+||
T Consensus        65 ~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d  121 (337)
T 1pby_B           65 TGETLGRIDL-S---------------------TPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYD  121 (337)
T ss_dssp             TCCEEEEEEC-C---------------------BTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             CCCeEeeEEc-C---------------------CcccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEE
Confidence            6543221110 0                     0001334678999999954 666665            579999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      +.+++.+..+.. ...+.+++|+|++ ++|+++  ++.|.+||+.+.+.... .........+.|+|++..+++++..++
T Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~  196 (337)
T 1pby_B          122 AETLSRRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVED-KPIQSWEAETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             TTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEE-ECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred             CCCCcEEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeee-eeccccCCCceeCCCccEEeeeccCCC
Confidence            999988887764 4568889999999 666666  68999999987764432 222221123378888765444433333


Q ss_pred             -----------------------cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          376 -----------------------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       376 -----------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                                             .|.+||+.+..        .....+..+...+.+++|+|++ ++|+++  ++.|++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~  265 (337)
T 1pby_B          197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--------MAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESF  265 (337)
T ss_dssp             EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEE
T ss_pred             ceeeeeeccccccccccccccccceEEEeCCCCC--------ceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEE
Confidence                                   46899998762        2244455677788999999998 777777  7899999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |+.+++..  ..+.. ...+.+++|+|++++ |++++.++.|++||+.+++.+.++-
T Consensus       266 d~~~~~~~--~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          266 DLEKNASI--KRVPL-PHSYYSVNVSTDGST-VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ETTTTEEE--EEEEC-SSCCCEEEECTTSCE-EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCcCc--ceecC-CCceeeEEECCCCCE-EEEEcCCCcEEEEECcCCcEEEEEE
Confidence            99988743  33332 245789999999995 6667889999999999998776553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=8.7e-21  Score=202.68  Aligned_cols=290  Identities=9%  Similarity=0.020  Sum_probs=187.0

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC--
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--  218 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d--  218 (502)
                      .+.+++|+|+|+++++ +.++     .|++|+...+....+..+|... ...+.+++|       ||+|++||+++.+  
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg-----~i~~~d~~~g~~~~~~~~~~~~-~~~v~~~~~-------SpDg~~l~~~~~~~~   83 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKG-----TVRLWNVETNTSTVLIEGKKIE-SLRAIRYEI-------SPDREYALFSYNVEP   83 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSS-----CEEEBCGGGCCCEEEECTTTTT-TTTCSEEEE-------CTTSSEEEEEESCCC
T ss_pred             cccccEEcCCCcEEEE-eCCC-----CEEEEECCCCcEEEEecccccc-ccccceEEE-------CCCCCEEEEEecCcc
Confidence            4678999999997765 4444     4555555444222333333211 001244555       8999999999764  


Q ss_pred             -------CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          219 -------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       219 -------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                             +.|.+||+.++.. ..                        .....+|...+.+++|+|+| ..||+++. +.|
T Consensus        84 ~~~~~~~~~i~~~d~~~~~~-~~------------------------l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i  136 (723)
T 1xfd_A           84 IYQHSYTGYYVLSKIPHGDP-QS------------------------LDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNI  136 (723)
T ss_dssp             CSSSCCCSEEEEEESSSCCC-EE------------------------CCCTTCCSCCCSBCCBCSST-TCEEEEET-TEE
T ss_pred             ceeecceeeEEEEECCCCce-Ee------------------------ccCCccccccccccEECCCC-CEEEEEEC-CeE
Confidence                   7788999986442 10                        11122466679999999995 57877776 799


Q ss_pred             EEEeCCCCeeeEeeccCCCCe------------------EEEEEcCCCCcEEEEEeCCC---------------------
Q 010748          292 KIWDVAAGKCNLTLEHHTDKV------------------QAVAWNHHSPQILLSGSFDR---------------------  332 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v------------------~~l~~~~~~~~~l~s~s~dg---------------------  332 (502)
                      ++||+.+++.......+...+                  .+++|+|+| +.|++++.++                     
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (723)
T 1xfd_A          137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKP  215 (723)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCccee
Confidence            999999988766655444333                  789999999 7777776543                     


Q ss_pred             -------------cEEEEecCCCCCccceEee------cCCeeEEEeCCCCCCEEEEEeC----CCcEEEEECCCCCCCC
Q 010748          333 -------------SVVMKDARISTHSGFKWAV------AADVESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKSDP  389 (502)
Q Consensus       333 -------------~i~iwd~~~~~~~~~~~~~------~~~v~~v~~~~~~~~~~~~~~~----dg~v~i~d~~~~~~~~  389 (502)
                                   .|++||+.++........+      ...+.+++|+|++. ++++...    +..|++||+.++    
T Consensus       216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g----  290 (723)
T 1xfd_A          216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTG----  290 (723)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTC----
T ss_pred             ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCC----
Confidence                         7999999887643222222      45688999999886 5544432    357999999876    


Q ss_pred             CCCCCccceEEe-ccCCCe----eEEEEcCCCCCEEEE-EeCCC------cEEEEE-CCCCCeeEEEEecCCCCcEEE-E
Q 010748          390 DSTSQQSSFTLH-AHDKAV----CTISYNPLVPNLLAT-GSTDK------MVKLWD-LSNNQPSCIASRNPKAGAVFS-V  455 (502)
Q Consensus       390 ~~~~~~~~~~~~-~h~~~v----~~l~~sp~~~~~l~t-~s~dg------~i~vwd-~~~~~~~~~~~~~~~~~~v~~-~  455 (502)
                           .....+. .+...+    ..++|+|+|..++++ +..++      .|.+|| ...+...+...+..+...+.. +
T Consensus       291 -----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~  365 (723)
T 1xfd_A          291 -----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL  365 (723)
T ss_dssp             -----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred             -----cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeee
Confidence                 3333333 234444    388999999555554 55677      577777 344331012223333344554 6


Q ss_pred             EEcCCCCcEEEEEeCC--CcEEEEECCCC
Q 010748          456 AFSEDSPFVLAIGGSK--GKLEIWDTLSD  482 (502)
Q Consensus       456 ~~spd~~~ll~sg~~d--g~i~vwd~~~~  482 (502)
                      +|+|+++++++++..+  +.++||++...
T Consensus       366 ~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          366 AYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             EEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            9999999654555554  78999998653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=2.1e-20  Score=181.46  Aligned_cols=240  Identities=13%  Similarity=0.085  Sum_probs=177.9

Q ss_pred             CCCCCEEEEecC-------CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC
Q 010748          206 REKGNFMAVGSM-------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  278 (502)
Q Consensus       206 s~~~~~la~g~~-------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  278 (502)
                      +|++++|++++.       ++.|.+||+.++......                            .....+.+++|+|++
T Consensus        49 s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~----------------------------~~~~~~~~~~~s~dg  100 (353)
T 3vgz_A           49 SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI----------------------------HNDLKPFGATINNTT  100 (353)
T ss_dssp             ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE----------------------------EESSCCCSEEEETTT
T ss_pred             CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE----------------------------ecCCCcceEEECCCC
Confidence            789998888774       468999998764332211                            122347889999996


Q ss_pred             CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCC---------eEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCccc
Q 010748          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDK---------VQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGF  347 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~  347 (502)
                      +.+++++..++.|.+||+.+++.+..+..+...         +.++.|+|++ +.+++++  .++.|.+||+.+.+....
T Consensus       101 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~~~~  179 (353)
T 3vgz_A          101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKLKTA  179 (353)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             CEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCceEEE
Confidence            656677777899999999999988888654432         7899999999 5555544  478999999988765543


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec----cCCCeeEEEEcCCCCCEEEEE
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .......+.+++|+|++. .+++++.++.|.+||+.+.         .....+..    +...+.+++|+|++..++++.
T Consensus       180 ~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          180 IQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADN---------KILSRKKLLDDGKEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             ECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTT---------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCC---------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence            322455688999999876 6788888999999999876         45555543    455688899999984444455


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..++.|.+||+.+++.......  ..  ..+++|+|++.+++++...++.|.+||+.+++.+...
T Consensus       250 ~~~~~v~~~d~~~~~~~~~~~~--~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          250 SKAAEVLVVDTRNGNILAKVAA--PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             SSSSEEEEEETTTCCEEEEEEC--SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEEc--CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            5569999999998874333332  22  2568999999976777667899999999988876543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=5.9e-21  Score=190.82  Aligned_cols=250  Identities=15%  Similarity=0.167  Sum_probs=169.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE--
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA--  283 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~--  283 (502)
                      ++++.+|++|+.++ |+||+........   ..+..         ..............|...|++++|+|++ ++|+  
T Consensus        45 s~~~~~l~~~~~dg-v~v~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~  110 (434)
T 2oit_A           45 SNKYGLVFAGGASG-LQIFPTKNLLIQN---KPGDD---------PNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSAC  110 (434)
T ss_dssp             ETTTTEEEEEETTE-EEEEEHHHHCCCC---CTTCC---------TTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEE
T ss_pred             ecCCCEEEEECCCE-EEEEEchHhhhhc---ccccC---------cccccccCccccccCCCcccEEEEcCCC-CEEEEE
Confidence            67889999999888 8998764211100   00000         0000000001112466789999999994 5777  


Q ss_pred             --EEecCCcEEEEeCCCC--------e---eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe
Q 010748          284 --SASADKQVKIWDVAAG--------K---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       284 --sgs~dg~v~vwd~~~~--------~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  350 (502)
                        +|+.|++|+|||+.++        +   .+..+.+|...|.+++|+|+.+.+|++++.||+|++||+++.........
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence              8889999999998764        2   24556779999999999998558999999999999999998755444455


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-------cCCCeeEEEEcCCCCCEEEE-
Q 010748          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-------HDKAVCTISYNPLVPNLLAT-  422 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~~l~t-  422 (502)
                      |...|.+++|+|++. +|++|+.||.|++||++ +         .....+..       |...|.+++|++++ .++++ 
T Consensus       191 ~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~---------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~  258 (434)
T 2oit_A          191 STVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-L---------QEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVY  258 (434)
T ss_dssp             GGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-C---------CEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEE
T ss_pred             CCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-C---------cccccccCCcccCCCCceeEEEEEEecCc-eEEEEE
Confidence            778999999999865 79999999999999998 3         22333332       33489999999976 44433 


Q ss_pred             EeCCCc------EEEEECCCCC---eeEEEEec-------CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          423 GSTDKM------VKLWDLSNNQ---PSCIASRN-------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       423 ~s~dg~------i~vwd~~~~~---~~~~~~~~-------~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ++.+|.      +++|+++...   +.....+.       ....+-..+.+.++...++++.+..+.|.|.....
T Consensus       259 ~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          259 AAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             EETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             ccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            444543      8999998652   11112211       22233334445577776667666677788877543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=4.1e-20  Score=198.04  Aligned_cols=289  Identities=13%  Similarity=0.129  Sum_probs=195.2

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCC---CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      ..+.+++|+|+|++|++++. +     .||+|+....   ....+..|     ...+.++.|       ||+|++||+++
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~-----~i~~~d~~~~~~~~~~~l~~~-----~~~~~~~~~-------SPDG~~la~~~  170 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-G-----ELYLYDLKQEGKAAVRQLTHG-----EGFATDAKL-------SPKGGFVSFIR  170 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-T-----EEEEEESSSCSTTSCCBCCCS-----SSCEEEEEE-------CTTSSEEEEEE
T ss_pred             cCcceeEECCCCCEEEEEeC-C-----cEEEEECCCCCcceEEEcccC-----CcccccccC-------CCCCCEEEEEe
Confidence            45899999999999999885 3     6666665443   22222222     122355666       89999999987


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc--------ccceeeEEeccCCCcEEEEEecC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH--------TDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h--------~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                       ++.|++|++.++.......  .+               .  .....++        ...+.+++|+|++ .+|++++.|
T Consensus       171 -~~~i~~~d~~~g~~~~~~~--~~---------------~--~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d  229 (741)
T 2ecf_A          171 -GRNLWVIDLASGRQMQLTA--DG---------------S--TTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARID  229 (741)
T ss_dssp             -TTEEEEEETTTTEEEECCC--CC---------------C--SSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEE
T ss_pred             -CCcEEEEecCCCCEEEecc--CC---------------c--cceeccccceeeeeccccccceEECCCC-CEEEEEEEc
Confidence             4699999997643211000  00               0  0000011        1235889999995 577777766


Q ss_pred             C---------------------------------cEEEEeCCC-CeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeC--
Q 010748          289 K---------------------------------QVKIWDVAA-GKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSF--  330 (502)
Q Consensus       289 g---------------------------------~v~vwd~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~--  330 (502)
                      +                                 .|++||+.+ ++......  .|...+.+++| |++ +.|++++.  
T Consensus       230 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~  307 (741)
T 2ecf_A          230 ESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSR  307 (741)
T ss_dssp             CTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEET
T ss_pred             CCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecc
Confidence            5                                 789999988 87654443  47788999999 999 66665543  


Q ss_pred             ---CCcEEEEecCCCCCccceEeecC----CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc
Q 010748          331 ---DRSVVMKDARISTHSGFKWAVAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH  403 (502)
Q Consensus       331 ---dg~i~iwd~~~~~~~~~~~~~~~----~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h  403 (502)
                         +..|.+||+.++........+..    .+..++|+|++. +++++..+|.+++|.+...        .. ...+..|
T Consensus       308 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~--------~~-~~~l~~~  377 (741)
T 2ecf_A          308 DQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSK--------GK-AAALTHG  377 (741)
T ss_dssp             TSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSS--------SC-EEESCCS
T ss_pred             cCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCC--------CC-eeeeeec
Confidence               56899999998776554333332    356899999987 8888899998888877633        24 6667778


Q ss_pred             CCCeeEE-EEcCCCCCEEEEEeCCC--cEEEEECCC-CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEE
Q 010748          404 DKAVCTI-SYNPLVPNLLATGSTDK--MVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEI  476 (502)
Q Consensus       404 ~~~v~~l-~~sp~~~~~l~t~s~dg--~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d---g~i~v  476 (502)
                      ...+..+ .|+|++..++++++.++  .++||++.. +.  ....+.. ...+.+++|+|++++++++.+..   ..+.+
T Consensus       378 ~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~--~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l  454 (741)
T 2ecf_A          378 NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG--QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIEL  454 (741)
T ss_dssp             SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC--CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC--Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEE
Confidence            8888887 59999844445666665  899998864 32  2233333 56688999999999755555443   46889


Q ss_pred             EECCCC
Q 010748          477 WDTLSD  482 (502)
Q Consensus       477 wd~~~~  482 (502)
                      |+...+
T Consensus       455 ~~~~~~  460 (741)
T 2ecf_A          455 FRANGE  460 (741)
T ss_dssp             EETTSC
T ss_pred             EEcCCC
Confidence            987543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=1.1e-19  Score=175.86  Aligned_cols=248  Identities=11%  Similarity=0.047  Sum_probs=171.0

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +++++++.++++++.++.|++||+.++......                          ..++...+..++|+|++..++
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~--------------------------~~~~~~~~~~~~~s~dg~~~~   58 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC--------------------------VMPDKFGPGTAMMAPDNRTAY   58 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE--------------------------ECSSCCSSCEEEECTTSSEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEE--------------------------ecCCCCCCceeEECCCCCEEE
Confidence            344788999999999999999999764322110                          001112577899999965556


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeeccCC------CCeEEEEEcCCCCcEEEEEeCC------------CcEEEEecCCCCC
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLEHHT------DKVQAVAWNHHSPQILLSGSFD------------RSVVMKDARISTH  344 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~s~d------------g~i~iwd~~~~~~  344 (502)
                      +++..++.|.+||+.+++.+..+..+.      ..+.+++|+|++ ++|++++.+            +.|.+||+.+.+.
T Consensus        59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  137 (349)
T 1jmx_B           59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  137 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence            677778999999999998887775332      237889999999 777777754            8999999987443


Q ss_pred             cc--ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCc-------------------------c-
Q 010748          345 SG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ-------------------------S-  396 (502)
Q Consensus       345 ~~--~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~-------------------------~-  396 (502)
                      ..  ....+...+.+++|+|++. +++ ++  +.|++||+.++..........                         . 
T Consensus       138 ~~~~~~~~~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (349)
T 1jmx_B          138 AKPVRTFPMPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML  213 (349)
T ss_dssp             BCCSEEEECCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             cceeeeccCCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence            22  2334455788999999886 444 43  349999998763210000000                         0 


Q ss_pred             ---------------------------------ceEEeccCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          397 ---------------------------------SFTLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       397 ---------------------------------~~~~~~h~~~v~~l~~sp-~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                                                       ...+..+...+.+++|+| ++ ++|+++  ++.|.+||+.+++..  
T Consensus       214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~--  288 (349)
T 1jmx_B          214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLI--  288 (349)
T ss_dssp             EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEE--
T ss_pred             eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEE--
Confidence                                             000001123466788889 87 777777  889999999988743  


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..+.. ...+.+++|+|++.+ |++++.++.|++||+.+++.+.+.
T Consensus       289 ~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          289 KAANL-DHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             EEEEC-SSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEE
T ss_pred             EEEcC-CCCccceEECCCCCE-EEEecCCCeEEEEeccccceeeee
Confidence            33322 234678999999986 555788899999999998877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=7.5e-20  Score=203.19  Aligned_cols=290  Identities=12%  Similarity=0.109  Sum_probs=211.0

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...+.++.|+|+ .+++++..++   ...||.++........+ .+|.    .+ .+..|       +|+|++||++.
T Consensus       201 ~~~~~v~~~~~s~d-~l~~~~~~dg---~~~l~~~~~~g~~~~~l-~~~~----~~-~~~~~-------SpDG~~la~~~  263 (1045)
T 1k32_A          201 DMSTHVSSPVIVGH-RIYFITDIDG---FGQIYSTDLDGKDLRKH-TSFT----DY-YPRHL-------NTDGRRILFSK  263 (1045)
T ss_dssp             CCSSCCEEEEEETT-EEEEEECTTS---SCEEEEEETTSCSCEEC-CCCC----SS-CEEEE-------EESSSCEEEEE
T ss_pred             CCCCcccceEEeCC-EEEEEEeccC---ceEEEEEeCCCCcceEe-cCCC----Cc-ceeeE-------cCCCCEEEEEe
Confidence            46778899999988 5555554433   56899988654311122 2221    11 23344       79999999884


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec-cCCCcEEEEEecCCcEEEEe
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILASASADKQVKIWD  295 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~sgs~dg~v~vwd  295 (502)
                       ++.|++|++... .+.   .+.+.             ..........|...|.+++|+ |+ +.+|++++ ++.|++|+
T Consensus       264 -~~~i~~~d~~~~-~l~---~l~~~-------------~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~  323 (1045)
T 1k32_A          264 -GGSIYIFNPDTE-KIE---KIEIG-------------DLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQD  323 (1045)
T ss_dssp             -TTEEEEECTTTC-CEE---ECCCC-------------CCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEEC
T ss_pred             -CCEEEEecCCce-Eee---eeccC-------------cccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEc
Confidence             899999998321 111   11110             000111122466789999999 99 45777776 78999999


Q ss_pred             CCCCeeeEeeccCCC-CeEEEEEcCCCCcEEEEEeCCCcEE-EEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          296 VAAGKCNLTLEHHTD-KVQAVAWNHHSPQILLSGSFDRSVV-MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      +.+++.. .+..|.. .+.+++|+ ++ ..|++++.++.+. +|++.+....... .+...+..++|+|++. .+++++.
T Consensus       324 ~~~~~~~-~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~-~la~~~~  398 (1045)
T 1k32_A          324 VSGTYVL-KVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGK-FAVVAND  398 (1045)
T ss_dssp             TTSSBEE-ECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSS-EEEEEET
T ss_pred             CCCCceE-EccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCC-EEEEECC
Confidence            9887654 4666777 89999999 87 7888888888888 9998876544433 5667899999999876 7888899


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC----------cEEEEECCCCCeeEEE
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----------MVKLWDLSNNQPSCIA  443 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----------~i~vwd~~~~~~~~~~  443 (502)
                      ++.|++||+.++         ........|...+.+++|+|++ ++|++++.++          .|++||+.+++   ..
T Consensus       399 ~~~v~~~d~~tg---------~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~  465 (1045)
T 1k32_A          399 RFEIMTVDLETG---------KPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IF  465 (1045)
T ss_dssp             TSEEEEEETTTC---------CEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EE
T ss_pred             CCeEEEEECCCC---------ceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc---EE
Confidence            999999999876         4455556799999999999998 7777776644          89999998875   45


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      .+..|...+.+++|+|+|++ |++++.++...+|+....
T Consensus       466 ~l~~~~~~~~~~~~spdG~~-l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          466 AATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             ECSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECSSSS
T ss_pred             EeeCCCcccCCceEcCCCCE-EEEEecccCCcCcchhcc
Confidence            66677888999999999995 777888888888886543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=8.9e-20  Score=202.56  Aligned_cols=286  Identities=10%  Similarity=0.013  Sum_probs=202.8

Q ss_pred             cccccccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          139 SEDLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ...+.++.|+ |+|+.|++++ .+     .||+++........+..|...    ...++.       |+ +|+.|++++.
T Consensus       295 ~~~v~~~~~S~pdG~~la~~~-~~-----~i~~~~~~~~~~~~~~~~~~~----~~~~~~-------~s-dg~~l~~~s~  356 (1045)
T 1k32_A          295 IPSKFAEDFSPLDGDLIAFVS-RG-----QAFIQDVSGTYVLKVPEPLRI----RYVRRG-------GD-TKVAFIHGTR  356 (1045)
T ss_dssp             CGGGGEEEEEECGGGCEEEEE-TT-----EEEEECTTSSBEEECSCCSCE----EEEEEC-------SS-SEEEEEEEET
T ss_pred             ccccceeeecCCCCCEEEEEE-cC-----EEEEEcCCCCceEEccCCCcc----eEEeee-------Ec-CCCeEEEEEC
Confidence            4478999999 9999999987 33     677777554311111111110    122333       48 9999999988


Q ss_pred             CCcEE-EeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          218 EPAIE-IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~-iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      ++.|. +|++.....                           . .+.+|...+.+++|+|+ +.+|++++.++.|++||+
T Consensus       357 ~~~l~~~~d~~~~~~---------------------------~-~l~~~~~~~~~~~~SpD-G~~la~~~~~~~v~~~d~  407 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKA---------------------------E-KFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDL  407 (1045)
T ss_dssp             TEEEEEEEETTTCCE---------------------------E-ECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEEET
T ss_pred             CCceEEEEECCCCCc---------------------------e-EecCCccceeeeEECCC-CCEEEEECCCCeEEEEEC
Confidence            88888 888864211                           1 12267788999999999 568999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC----------CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----------RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      .+++....+..|...+.+++|+|++ ++|++++.+          +.|++||+.++. ......+...+.+++|+|++. 
T Consensus       408 ~tg~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~-  484 (1045)
T 1k32_A          408 ETGKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK-  484 (1045)
T ss_dssp             TTCCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC-
T ss_pred             CCCceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC-
Confidence            9999888877899999999999999 777777654          489999998865 333445566788899999887 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCC---------------------------------CC-CCCccceEEeccCCCeeEEEE
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDP---------------------------------DS-TSQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~---------------------------------~~-~~~~~~~~~~~h~~~v~~l~~  412 (502)
                      .+++++.++....|+........                                 .. .....+..+..|.+.+..+++
T Consensus       485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~  564 (1045)
T 1k32_A          485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  564 (1045)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence            67777777776777654321100                                 00 001123455567788999999


Q ss_pred             cCCCCCEEEE-------------EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          413 NPLVPNLLAT-------------GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       413 sp~~~~~l~t-------------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      +|++ .++++             ......|.+||+.+++...+.      ..+.+++|+|||++ |++++.+ .|++||+
T Consensus       565 s~dg-~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~-l~~~~~~-~i~~~d~  635 (1045)
T 1k32_A          565 LESS-ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKT-VMVRKDD-GKIYTFP  635 (1045)
T ss_dssp             CSSE-EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCE-EEEEETT-SCEEEEE
T ss_pred             cCCC-eEEEEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCE-EEEEcCC-cEEEEeC
Confidence            9987 66664             123457889999888743222      55889999999996 6666655 8999999


Q ss_pred             CCCc
Q 010748          480 LSDA  483 (502)
Q Consensus       480 ~~~~  483 (502)
                      .+++
T Consensus       636 ~~~~  639 (1045)
T 1k32_A          636 LEKP  639 (1045)
T ss_dssp             SSCT
T ss_pred             ccCc
Confidence            8876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=2.1e-19  Score=191.97  Aligned_cols=306  Identities=13%  Similarity=0.090  Sum_probs=186.1

Q ss_pred             ccccccccCCCceEEEEEecCCcc----eeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVS----HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~----~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+++|+|+|++|++++.+....    .-.+|+|+...+....+.. .. .....+.+       ++|||+|++||.++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~-~~~~~~~~-------~~~SPdG~~la~~~  132 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP-PE-VSNAKLQY-------AGWGPKGQQLIFIF  132 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC-TT-CCSCCCSB-------CCBCSSTTCEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC-Cc-cccccccc-------cEECCCCCEEEEEE
Confidence            489999999999999997654221    1256666655441101111 10 00011223       34499999999998


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc---------cceeeEEeccCCCcEEEEEec
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT---------DSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      . +.|++|++.++.....   ...               ......+.++.         ..+.+++|+|++ ..|++++.
T Consensus       133 ~-~~i~~~~~~~g~~~~~---~~~---------------~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~  192 (723)
T 1xfd_A          133 E-NNIYYCAHVGKQAIRV---VST---------------GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAI  192 (723)
T ss_dssp             T-TEEEEESSSSSCCEEE---ECC---------------CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEE
T ss_pred             C-CeEEEEECCCCceEEE---ecC---------------CCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEE
Confidence            6 7999999986543211   000               00000011111         134789999995 57777765


Q ss_pred             CC----------------------------------cEEEEeCCCCeeeEeeccC------CCCeEEEEEcCCCCcEEEE
Q 010748          288 DK----------------------------------QVKIWDVAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       288 dg----------------------------------~v~vwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s  327 (502)
                      ++                                  .|++||+.++++...+..+      ...+.+++|+|++ ++|++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~  271 (723)
T 1xfd_A          193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVT  271 (723)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEE
T ss_pred             CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEE
Confidence            43                                  7999999988866666544      5678999999999 67766


Q ss_pred             EeC----CCcEEEEecCCCCCccceEee-cCCe----eEEEeCCCCCCEEEE-EeCCC------cEEEEEC-CCCCCCCC
Q 010748          328 GSF----DRSVVMKDARISTHSGFKWAV-AADV----ESLAWDPHAEHSFVV-SLEDG------TIKGFDI-RTAKSDPD  390 (502)
Q Consensus       328 ~s~----dg~i~iwd~~~~~~~~~~~~~-~~~v----~~v~~~~~~~~~~~~-~~~dg------~v~i~d~-~~~~~~~~  390 (502)
                      .+.    +..|.+||+.+++........ ...+    ..++|+|++..++++ +..++      .|++||+ .....   
T Consensus       272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~---  348 (723)
T 1xfd_A          272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN---  348 (723)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS---
T ss_pred             EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc---
Confidence            543    357999999887755433322 3333    378999998876665 56677      5677773 33210   


Q ss_pred             CCCCccceEEeccCCCeeE-EEEcCCCCCEEEEEeC-C--CcEEEEECCCCCeeEEEEecC---CCCcEEEEEEcCCCCc
Q 010748          391 STSQQSSFTLHAHDKAVCT-ISYNPLVPNLLATGST-D--KMVKLWDLSNNQPSCIASRNP---KAGAVFSVAFSEDSPF  463 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~spd~~~  463 (502)
                          .+...+..+...+.. ++|+|++ +.|+..+. +  +.++||++..........+..   |...+..++|+|++++
T Consensus       349 ----~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~  423 (723)
T 1xfd_A          349 ----DNIQSITSGDWDVTKILAYDEKG-NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDF  423 (723)
T ss_dssp             ----CCCCBSCCSSSCEEEEEEEETTT-TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred             ----cceeEeecCCeEEEeeeEEcCCC-CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCE
Confidence                012333333344544 6999998 66655544 4  789999986532111222222   5567889999999997


Q ss_pred             EEEEEeCCC--cEEEEECCCCcc
Q 010748          464 VLAIGGSKG--KLEIWDTLSDAG  484 (502)
Q Consensus       464 ll~sg~~dg--~i~vwd~~~~~~  484 (502)
                      ++++.+..+  ...+++..++..
T Consensus       424 l~~~~~~~~~p~~~~~~~~~~~~  446 (723)
T 1xfd_A          424 FLLKCEGPGVPMVTVHNTTDKKK  446 (723)
T ss_dssp             EEEECCSSSSCCEEEEETTTCCE
T ss_pred             EEEEccCCCCCeEEEEECCCCCE
Confidence            665554443  334456544443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=7.3e-19  Score=187.29  Aligned_cols=281  Identities=10%  Similarity=0.090  Sum_probs=185.4

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC--CCeeeeecccc------------CCCcceeeeecCCCCCC
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIII------------PAFPLCMAWLDCPLKDR  206 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~--~~l~~~~~~~~------------~~~~~~~~~~~~~~~~s  206 (502)
                      .+..+.|.  +..++.++.++    +   +|+...+..  ..+..++....            ...+.+++|       |
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~----i---~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~-------s   90 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD----L---VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD-------A   90 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE----E---EEEC-------CEEEEHHHHHTTC-----------CCCEEEEE-------T
T ss_pred             cCCCCcCc--CCeEEEEeCCc----E---EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEE-------C
Confidence            46678888  55666665432    4   444444333  34444442210            012345555       8


Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      |+ ++++.+. ++.|++||+.++...                            .+..+...+.+++|+|++ ..|+++ 
T Consensus        91 pd-~~~~~~~-~~~i~~~d~~~~~~~----------------------------~l~~~~~~~~~~~~SpdG-~~la~~-  138 (706)
T 2z3z_A           91 GR-GLVVLFT-QGGLVGFDMLARKVT----------------------------YLFDTNEETASLDFSPVG-DRVAYV-  138 (706)
T ss_dssp             TT-TEEEEEE-TTEEEEEETTTTEEE----------------------------EEECCTTCCTTCEECTTS-SEEEEE-
T ss_pred             CC-CeEEEEE-CCEEEEEECCCCceE----------------------------EccCCcccccCCcCCCCC-CEEEEE-
Confidence            89 6665553 599999999753211                            122356678999999995 577774 


Q ss_pred             cCCcEEEEeCCC-----CeeeEeeccCCCC--------------eEEEEEcCCCCcEEEEEe------------------
Q 010748          287 ADKQVKIWDVAA-----GKCNLTLEHHTDK--------------VQAVAWNHHSPQILLSGS------------------  329 (502)
Q Consensus       287 ~dg~v~vwd~~~-----~~~~~~~~~h~~~--------------v~~l~~~~~~~~~l~s~s------------------  329 (502)
                      .++.|++|++.+     ++.......+...              +.++.|+|++ ++|++++                  
T Consensus       139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~  217 (706)
T 2z3z_A          139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLE  217 (706)
T ss_dssp             ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSS
T ss_pred             ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCC
Confidence            679999999998     7766544433332              4899999999 7788777                  


Q ss_pred             ---------------CCCcEEEEecCCCCCccceE--eecCCeeEEEeCCCCCCEEEEEeCCC-----cEEEEECCCCCC
Q 010748          330 ---------------FDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDG-----TIKGFDIRTAKS  387 (502)
Q Consensus       330 ---------------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~~~~dg-----~v~i~d~~~~~~  387 (502)
                                     .+..|.+||+.++.......  .+...+.+++|+|++. .+++++.++     .|++||+.++  
T Consensus       218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g--  294 (706)
T 2z3z_A          218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETG--  294 (706)
T ss_dssp             CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTC--
T ss_pred             CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCC--
Confidence                           44789999998776433222  2345689999999876 566655554     8999999875  


Q ss_pred             CCCCCCCccceEEe--ccCC---CeeEEEEcC--CCCCEEEEEeCCCcEEEEECC-CCCeeEEEEecCCCCcEEE-EEEc
Q 010748          388 DPDSTSQQSSFTLH--AHDK---AVCTISYNP--LVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGAVFS-VAFS  458 (502)
Q Consensus       388 ~~~~~~~~~~~~~~--~h~~---~v~~l~~sp--~~~~~l~t~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~-~~~s  458 (502)
                             .....+.  .+..   .+.+++|+|  ++ .+|++++.++.++||.+. ++.  .+..+..+...+.+ ++|+
T Consensus       295 -------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~--~~~~l~~~~~~v~~~~~~s  364 (706)
T 2z3z_A          295 -------RFVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR--LIRQVTKGEWEVTNFAGFD  364 (706)
T ss_dssp             -------CEEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC--EEEECCCSSSCEEEEEEEC
T ss_pred             -------ceeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC--EEEecCCCCeEEEeeeEEc
Confidence                   1222222  2222   347789999  88 789999999999999876 343  45556667777876 7999


Q ss_pred             CCCCcEEEEEeCCC----cEEEEECCCCc
Q 010748          459 EDSPFVLAIGGSKG----KLEIWDTLSDA  483 (502)
Q Consensus       459 pd~~~ll~sg~~dg----~i~vwd~~~~~  483 (502)
                      |+++.++++++.++    .|..|++.++.
T Consensus       365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          365 PKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             TTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             CCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            99997666666665    67777777654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=5.2e-19  Score=184.08  Aligned_cols=274  Identities=8%  Similarity=0.019  Sum_probs=187.5

Q ss_pred             ccccccccccCCCceEEEEEe-cCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          139 SEDLEDMTINPNDAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ...|.++.|+|||+.||.++. ++   .++||.++.+..  ..+..|+...    ...+       .|+|+ +++++++.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g---~~~lw~~~~g~~--~~lt~~~~~~----~~~~-------~~spd-~~l~~~~~   83 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEG---SVNAYLYDGGET--VKLNREPINS----VLDP-------HYGVG-RVILVRDV   83 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETT---EEEEEEEETTEE--EECCSSCCSE----ECEE-------CTTCS-EEEEEEEC
T ss_pred             ccchheeecCCCCCeEEEEEccCC---ceeEEEEcCCCc--Eeeecccccc----cccc-------cCCCC-eEEEEecc
Confidence            346899999999999999886 44   678998754321  1111222111    1233       34888 77777765


Q ss_pred             ---CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          218 ---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       218 ---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                         +...+||.++..+.-.                      ..   .+. ....+...+|+|++..++++.+.++.+.+|
T Consensus        84 ~~g~~~~~l~~~~~~~~g~----------------------~~---~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~  137 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPGE----------------------EQ---RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALY  137 (582)
T ss_dssp             STTSCCEEEEEEETTSTTC----------------------CE---ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEE
T ss_pred             CCCCcceEEEEEeccCCCc----------------------cc---ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEE
Confidence               4566777664310000                      00   000 111233567888865555555555556699


Q ss_pred             eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEE
Q 010748          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~  370 (502)
                      |+.++++......+.   .+++|+|+| ++|++++.+    +.|++||+.++.... ...+...+..++|+|+|. .+++
T Consensus       138 d~~~g~~~~l~~~~~---~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~~~~~~~~~~~~SpDG~-~l~~  211 (582)
T 3o4h_A          138 ALDGGGLRELARLPG---FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLRV-FDSGEGSFSSASISPGMK-VTAG  211 (582)
T ss_dssp             EEETTEEEEEEEESS---CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCEE-ECCSSCEEEEEEECTTSC-EEEE
T ss_pred             EccCCcEEEeecCCC---ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCceE-eecCCCccccceECCCCC-EEEE
Confidence            999987765554333   789999999 888877776    789999998877553 455667789999999987 5667


Q ss_pred             EeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEE--------EcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          371 SLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS--------YNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       371 ~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--------~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      +..+|  .|++||+.++         ... .+..|...+..++        |+|++ .++++++.++.+++|++  ++. 
T Consensus       212 ~~~~~~~~i~~~d~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~-  277 (582)
T 3o4h_A          212 LETAREARLVTVDPRDG---------SVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER-  277 (582)
T ss_dssp             EECSSCEEEEEECTTTC---------CEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE-
T ss_pred             ccCCCeeEEEEEcCCCC---------cEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe-
Confidence            78888  8999999876         333 5667777777777        99999 99999999999999999  542 


Q ss_pred             EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC---cEEEEECCC
Q 010748          441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG---KLEIWDTLS  481 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg---~i~vwd~~~  481 (502)
                       ..   ...+.|.+++|+ ++. ++++++.+.   .+.+|++.+
T Consensus       278 -~~---~~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          278 -VE---APQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             -EC---CCSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred             -ec---cCCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence             22   334779999999 887 466666664   466666643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=1.7e-17  Score=160.87  Aligned_cols=267  Identities=9%  Similarity=0.140  Sum_probs=167.4

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec-CC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-ME  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~-~d  218 (502)
                      .....++|+|+++ |++++..+....+.+|..+....   ... .........|.+++|       +|+|++|++++ .+
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---~~~-~~~~~~~~~p~~~a~-------spdg~~l~~~~~~~  107 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---HKL-NTVVAPGTPPAYVAV-------DEARQLVYSANYHK  107 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---EEE-EEEEEESCCCSEEEE-------ETTTTEEEEEETTT
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---EEe-eeeecCCCCCEEEEE-------CCCCCEEEEEeCCC
Confidence            4567899999999 55555432223455555533221   111 111112344566666       79999888887 67


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC-
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA-  297 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~-  297 (502)
                      +.|.+|++...........+..           ..  ....  ...+...+.+++|+|++. +++++..++.|.+|++. 
T Consensus       108 ~~v~v~~~~~~g~~~~~~~~~~-----------~~--~~p~--~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A          108 GTAEVMKIAADGALTLTDTVQH-----------SG--HGPR--PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEC-----------CC--CCSS--TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECT
T ss_pred             CEEEEEEeCCCCCeeecceeec-----------CC--CCCC--ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECC
Confidence            9999999963222111111000           00  0000  112345688999999966 77777788999999998 


Q ss_pred             CCeee--Eeecc-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC--CCCccc--eEeec------CCeeEEEeCCCC
Q 010748          298 AGKCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGF--KWAVA------ADVESLAWDPHA  364 (502)
Q Consensus       298 ~~~~~--~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~~--~~~~~------~~v~~v~~~~~~  364 (502)
                      +++..  ..+.. ....+..++|+|++..+++++..++.|.+|++..  +.....  .....      ..+..++|+|++
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG  251 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG  251 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence            55432  22222 2346788999999933555567789999999875  221111  11111      347889999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-CCcEEEE--ECCCCCeeE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLW--DLSNNQPSC  441 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vw--d~~~~~~~~  441 (502)
                      ..+++++..++.|.+|++.....      ...+..+..+...+..++|+|++ ++|++++. ++.|.+|  |..+++...
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~~g~------~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTADGH------LTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECGGGC------EEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CEEEEEeCCCCEEEEEEECCCCc------EEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            75556777799999999873210      24455666667778999999998 76766665 5899999  555666433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=8.7e-18  Score=164.21  Aligned_cols=282  Identities=11%  Similarity=0.080  Sum_probs=173.5

Q ss_pred             eEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccC--CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCC-CC
Q 010748          153 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP--AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD-VI  229 (502)
Q Consensus       153 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~-~~  229 (502)
                      .|++|+.... ..+.+|.++...+   .+.........  ..|..++|       +|+|++|++++.+ .|.+|++. .+
T Consensus         4 ~~~vg~~~~~-~~i~~~~~d~~~g---~l~~~~~~~~~~~~~~~~~a~-------spdg~~l~~~~~~-~v~~~~~~~~g   71 (365)
T 1jof_A            4 HLMIGTWTPP-GAIFTVQFDDEKL---TCKLIKRTEIPQDEPISWMTF-------DHERKNIYGAAMK-KWSSFAVKSPT   71 (365)
T ss_dssp             EEEEEESSSS-CEEEEEEEETTTT---EEEEEEEEECCTTCCCSEEEE-------CTTSSEEEEEEBT-EEEEEEEEETT
T ss_pred             EEEEEEccCC-CcEEEEEEECCCC---CEEEeeEEccCCCCCCcEEEE-------CCCCCEEEEEccc-eEEEEEECCCC
Confidence            3555554321 2355556655444   33322222112  23455555       8999999998887 99999986 32


Q ss_pred             CCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc-EEEEEe-------------cCCcEEEEe
Q 010748          230 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN-ILASAS-------------ADKQVKIWD  295 (502)
Q Consensus       230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~sgs-------------~dg~v~vwd  295 (502)
                      .....                         .....+ +.+.+++|+|+++. ++++++             .+|++.+|+
T Consensus        72 ~~~~~-------------------------~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~  125 (365)
T 1jof_A           72 EIVHE-------------------------ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFS  125 (365)
T ss_dssp             EEEEE-------------------------EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEE
T ss_pred             CEEEe-------------------------eEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEc
Confidence            21100                         000011 23566899999543 355553             689999999


Q ss_pred             CC-CCeeeEeec----cCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEecC-CCCCccc-eEe---ecCCeeEEEeCCCC
Q 010748          296 VA-AGKCNLTLE----HHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDAR-ISTHSGF-KWA---VAADVESLAWDPHA  364 (502)
Q Consensus       296 ~~-~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~-~~~---~~~~v~~v~~~~~~  364 (502)
                      +. .++....+.    .+...+.+++|+|++ ++|+++. .++.|.+|++. +++.... ...   +...+..++|+|++
T Consensus       126 ~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg  204 (365)
T 1jof_A          126 VSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG  204 (365)
T ss_dssp             ECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred             cCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence            97 465544443    255789999999999 6666665 46899999998 5543221 112   24568999999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc---eEEe-------ccCC------CeeEEE-EcCCCCCEEEEEeC-C
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS---FTLH-------AHDK------AVCTIS-YNPLVPNLLATGST-D  426 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~---~~~~-------~h~~------~v~~l~-~sp~~~~~l~t~s~-d  426 (502)
                      ..+++++..++.|.+|++....       ....   ..+.       +|..      .+..++ |+|++ ++|+++.. .
T Consensus       205 ~~l~v~~~~~~~v~v~~~~~~~-------g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~  276 (365)
T 1jof_A          205 NYLYALMEAGNRICEYVIDPAT-------HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRAN  276 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTT-------CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEES
T ss_pred             CEEEEEECCCCeEEEEEEeCCC-------CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCC
Confidence            7444444457899999875321       0111   1121       1222      478999 99998 66666553 2


Q ss_pred             C-----cEEEEECC-CCCeeEEEE-ecCCCCcEEEEEEcC---CCCcEEEEEeC-CCcEEEEECCCC
Q 010748          427 K-----MVKLWDLS-NNQPSCIAS-RNPKAGAVFSVAFSE---DSPFVLAIGGS-KGKLEIWDTLSD  482 (502)
Q Consensus       427 g-----~i~vwd~~-~~~~~~~~~-~~~~~~~v~~~~~sp---d~~~ll~sg~~-dg~i~vwd~~~~  482 (502)
                      +     .|.+|++. +++...+.. ...+...+..++|+|   ++++ |++++. ++.|.||++...
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE-EEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE-EEEEEcCCCeEEEEEEchh
Confidence            3     89999996 555332222 323334456789999   8996 555655 589999999766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=2.7e-18  Score=165.15  Aligned_cols=234  Identities=11%  Similarity=0.050  Sum_probs=166.9

Q ss_pred             CEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc-ceeeEEeccCCCcEEEEEecC
Q 010748          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      ++|++++.++.|++||+.++......                          ..++.. .+.+++|+|+++.++++++.+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~--------------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~   55 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVI--------------------------TIADAGPTPMVPMVAPGGRIAYATVNKS   55 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE--------------------------ECTTCTTCCCCEEECTTSSEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEE--------------------------EcCCCCCCccceEEcCCCCEEEEEeCCC
Confidence            57899999999999999764322111                          012222 478899999966666777788


Q ss_pred             CcEEEEeCCCCeeeEeecc-C----CCCeEEEEEcCCCCcEEEEEe------------CCCcEEEEecCCCCCccceEee
Q 010748          289 KQVKIWDVAAGKCNLTLEH-H----TDKVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~-h----~~~v~~l~~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~  351 (502)
                      +.|.+||+.+++.+..+.. +    ...+.+++|+|++ ++|++++            .++.|.+||+.+.+... ....
T Consensus        56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~  133 (337)
T 1pby_B           56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-AFEA  133 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-EEEC
T ss_pred             CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEE-EEeC
Confidence            9999999999988877653 2    2267789999999 6777775            57999999998765443 3344


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC----
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----  427 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----  427 (502)
                      ...+.+++|+|++.. ++++  ++.|++||+.++         .....+..+.. ...+.|+|++..+++++..++    
T Consensus       134 ~~~~~~~~~s~dg~~-l~~~--~~~i~~~d~~~~---------~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~  200 (337)
T 1pby_B          134 PRQITMLAWARDGSK-LYGL--GRDLHVMDPEAG---------TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             CSSCCCEEECTTSSC-EEEE--SSSEEEEETTTT---------EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred             CCCcceeEECCCCCE-EEEe--CCeEEEEECCCC---------cEeeeeecccc-CCCceeCCCccEEeeeccCCCceee
Confidence            567889999998874 5555  689999999876         44445543331 113378888743433333333    


Q ss_pred             -------------------cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          428 -------------------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       428 -------------------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                                         .|.+||+.+++.. ......+...+.+++|+|++++ |+++  ++.|++||+.+++.+...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCcCccee
Confidence                               4689999998854 4455556677899999999996 5555  689999999988776543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=7.2e-17  Score=157.28  Aligned_cols=287  Identities=8%  Similarity=0.081  Sum_probs=173.5

Q ss_pred             CccccccccccCCCceEEEEEecC-CcceeEEEEEecCCCCCCCeeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          138 DSEDLEDMTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~-~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      +......++|+|++++|++++.++ ....+.+|.++...+   .+....... ....|..+++         ++++|+++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---~~~~~~~~~~~~~~p~~~~~---------dg~~l~~~  115 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---TLHLLNTQKTMGADPCYLTT---------NGKNIVTA  115 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT---EEEEEEEEECSSSCEEEEEE---------CSSEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---cEEEeeEeccCCCCcEEEEE---------CCCEEEEE
Confidence            345677899999999999888752 124678888886543   332222111 1223344332         67777766


Q ss_pred             c-CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          216 S-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       216 ~-~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      + .++.|.+|++.....+......-.          ..   .........+...+.+++|+|++..+++++..++.|.+|
T Consensus       116 ~~~~~~v~~~~~~~~g~~~~~~~~~~----------~~---g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~  182 (361)
T 3scy_A          116 NYSGGSITVFPIGQDGALLPASDVIE----------FK---GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF  182 (361)
T ss_dssp             ETTTTEEEEEEBCTTSCBCSCSEEEE----------CC---CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ECCCCEEEEEEeCCCCcCcccceeEE----------cc---CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence            5 578999999975433221110000          00   000000112344578899999965455666668999999


Q ss_pred             eCCCCe-------e------eEeeccCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCccceE-----eecCCe
Q 010748          295 DVAAGK-------C------NLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW-----AVAADV  355 (502)
Q Consensus       295 d~~~~~-------~------~~~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-----~~~~~v  355 (502)
                      ++....       .      ......+...+.+++|+|++ +++++++ .++.|.+|++.++.......     .....+
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~  261 (361)
T 3scy_A          183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS  261 (361)
T ss_dssp             EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred             EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence            887543       1      11122345668899999999 6666655 68999999998654322111     112346


Q ss_pred             eEEEeCCCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEE
Q 010748          356 ESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWD  433 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd  433 (502)
                      ..++|+|++..++++... ++.|.+|++......     ...+..+.. ...+.+++|+|++ ++|++++ .++.|.+|.
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-----~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-----LTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-----EEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEE
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-----EEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEE
Confidence            799999998744444444 589999999632100     123444444 5578899999998 6666666 678999965


Q ss_pred             C--CCCCeeEEEEecCCCCcEEEEEEc
Q 010748          434 L--SNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       434 ~--~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +  .+++...+ ....+...+.|+.|.
T Consensus       335 ~d~~~g~~~~~-~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          335 RDQATGLLTDI-KKDIKVDKPVCLKFV  360 (361)
T ss_dssp             ECTTTCCEEEC-SCCEECSSEEEEEEE
T ss_pred             EECCCCcEeec-ceeeeCCCCeEEEEc
Confidence            4  45552211 112244568888885

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=6.5e-18  Score=166.24  Aligned_cols=287  Identities=10%  Similarity=0.031  Sum_probs=178.2

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      +....|+|+|+.|+.++..+.  ...||+++........+..++...    .....|       +|+|++|+.++.++.|
T Consensus        38 ~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~~~~~----~~~~~~-------spdg~~l~~~~~~~~l  104 (388)
T 3pe7_A           38 FYQKCFTRDGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEGRGDN----TFGGFL-------SPDDDALFYVKDGRNL  104 (388)
T ss_dssp             TTSCCBCTTSCEEEEEECTTS--SCEEEEEETTTCEEEECCCSSCBC----SSSCEE-------CTTSSEEEEEETTTEE
T ss_pred             hcCccCCCCCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeCCCCC----ccceEE-------cCCCCEEEEEeCCCeE
Confidence            344899999999999987332  447888886654111111111111    113344       8999999999999999


Q ss_pred             EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE--eccCCCcEEEEE--------------
Q 010748          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA--WNKEFRNILASA--------------  285 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~~l~sg--------------  285 (502)
                      ++||+.++....                           ....+...+....  ++|++. +++..              
T Consensus       105 ~~~d~~~g~~~~---------------------------~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A          105 MRVDLATLEENV---------------------------VYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             EEEETTTCCEEE---------------------------EEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHH
T ss_pred             EEEECCCCccee---------------------------eeechhhcccccceeECCCCC-eeccccccCcccccccccc
Confidence            999998643211                           1112333343333  478744 55532              


Q ss_pred             --------ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcC-CCCcEEEEEeCC------CcEEEEecCCCCCccceEe
Q 010748          286 --------SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFD------RSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       286 --------s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~  350 (502)
                              ..+..|.+||+.+++... +..+...+..+.|+| ++ ..|+.++..      ..|.++|+...........
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  234 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH  234 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred             hhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence                    234679999999886544 444677899999999 88 666666553      3788888766544332222


Q ss_pred             ec-CCeeEEEeCCCCCCEEEEEeCCC----cEEEEECCCCCCCCCCCCCccceEEeccCC---CeeEEEEcCCCCCEEEE
Q 010748          351 VA-ADVESLAWDPHAEHSFVVSLEDG----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---AVCTISYNPLVPNLLAT  422 (502)
Q Consensus       351 ~~-~~v~~v~~~~~~~~~~~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~l~t  422 (502)
                      .. ..+..++|+|++..+++++..++    .|++||+.++..       ..+..+..+..   ....+.|+|+|..++++
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred             CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence            21 24778899999886656655433    399999987621       22323322110   02224789998444433


Q ss_pred             E--------eCCCcEEEEECCCCCeeEEEEecCCCC-----------cEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          423 G--------STDKMVKLWDLSNNQPSCIASRNPKAG-----------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       423 ~--------s~dg~i~vwd~~~~~~~~~~~~~~~~~-----------~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      .        ..+..|++||+.+++...+..   +..           .+.+++|+|||++++.++..+|...||.+.-
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNGTQHRVAR---HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             ---------CCCCEEEEEETTTTEEEEEEE---CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             eeeccccccCCCCEEEEEeccCCceEEecc---ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            3        456789999999876433332   333           4778899999997666666778777776543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=8.4e-19  Score=182.52  Aligned_cols=227  Identities=11%  Similarity=0.090  Sum_probs=164.7

Q ss_pred             CCCCCEEEEecC-CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc-cceeeEEeccCCCcEEE
Q 010748          206 REKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKEFRNILA  283 (502)
Q Consensus       206 s~~~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~  283 (502)
                      +|||++||+++. +|.++||+++.+..                            ..+..|. ..|.+++|+|+  .+++
T Consensus        30 ~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~~~~~~~~~~spd--~~l~   79 (582)
T 3o4h_A           30 VVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREPINSVLDPHYGVG--RVIL   79 (582)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSCCSEECEECTTCS--EEEE
T ss_pred             CCCCCeEEEEEccCCceeEEEEcCCCc----------------------------EeeecccccccccccCCCC--eEEE
Confidence            799999999887 99999999753211                            1122344 68999999998  4777


Q ss_pred             EEec---CCcEEEEeCCC---CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeE
Q 010748          284 SASA---DKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES  357 (502)
Q Consensus       284 sgs~---dg~v~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~  357 (502)
                      +++.   +....+|.+..   +... .+..+ ..+...+|+|++..++++++.++.+.+||+.++.... ...+..  .+
T Consensus        80 ~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~~~~--~~  154 (582)
T 3o4h_A           80 VRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LARLPG--FG  154 (582)
T ss_dssp             EEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEEESS--CE
T ss_pred             EeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eecCCC--ce
Confidence            7765   45556655432   2222 34322 2345678888886666666666667799998876443 223333  88


Q ss_pred             EEeCCCCCCEEEEEeCC----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC--cEEE
Q 010748          358 LAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--MVKL  431 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg--~i~v  431 (502)
                      ++|+|+|. .+++++.+    +.|++||+.++         . ...+..|...+..++|+|+| +.|+++..++  .|++
T Consensus       155 ~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g---------~-~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~  222 (582)
T 3o4h_A          155 FVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSG---------G-LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVT  222 (582)
T ss_dssp             EEEEEETT-EEEEEEEEETTEEEEEEEETTTC---------C-CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEE
T ss_pred             EEECCCCC-EEEEEEEcCCCCeEEEEEcCCCC---------C-ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEE
Confidence            99999987 56655555    67999999875         2 34677888899999999998 8888888888  8999


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEE--------EcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVA--------FSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~--------~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      ||+.+++..   ....|...+..++        |+||| .++++++.+|.+++|++  ++.+
T Consensus       223 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          223 VDPRDGSVE---DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             ECTTTCCEE---ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEE
T ss_pred             EcCCCCcEE---EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCee
Confidence            999988743   5556666666666        99999 58999999999999999  5443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=7.4e-18  Score=179.88  Aligned_cols=299  Identities=13%  Similarity=0.102  Sum_probs=189.6

Q ss_pred             cccccccCCCceEEEEEecCCc----ceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          142 LEDMTINPNDAVIVCARNEDDV----SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~----~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +.++.|+|+|++|+.++.....    ..-.||+++...+   ....  ...+.....++.|       ||+|++||.+. 
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g---~~~~--~~~l~~~~~~~~~-------SPDG~~la~~~-  128 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG---EFVR--GNELPRPIQYLCW-------SPVGSKLAYVY-  128 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---EECC--SSCCCSSBCCEEE-------CSSTTCEEEEE-
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC---cccc--ceecCcccccceE-------CCCCCEEEEEE-
Confidence            8899999999999998762100    0126777776554   2200  0111222344555       89999999986 


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccce---------eeEEeccCCCcEEEEEecC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV---------LGLAWNKEFRNILASASAD  288 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V---------~~l~~~~~~~~~l~sgs~d  288 (502)
                      ++.|++|++.++....-  ...                ......+.+|...|         .+++|+|+| .+||+++.|
T Consensus       129 ~~~i~~~~~~~g~~~~l--~~~----------------~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d  189 (719)
T 1z68_A          129 QNNIYLKQRPGDPPFQI--TFN----------------GRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFN  189 (719)
T ss_dssp             TTEEEEESSTTSCCEEC--CCC----------------CBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEE
T ss_pred             CCeEEEEeCCCCCcEEE--ecC----------------CCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEEC
Confidence            78999999986543210  000                00011122343333         589999995 578887765


Q ss_pred             C----------------------------------cEEEEeCCCCeee--------EeeccCCCCeEEEEEcCCCCcEEE
Q 010748          289 K----------------------------------QVKIWDVAAGKCN--------LTLEHHTDKVQAVAWNHHSPQILL  326 (502)
Q Consensus       289 g----------------------------------~v~vwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~l~  326 (502)
                      .                                  .|++||+.+++..        ..+.+|...+.+++|+|++ ++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~  268 (719)
T 1z68_A          190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCL  268 (719)
T ss_dssp             CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEE
T ss_pred             CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEE
Confidence            2                                  7889999988653        2234688889999999997 7777


Q ss_pred             EEeCC----CcEEEEe----cCCCCCccce----EeecCCee-----EEEeCCCCCCEEEE-EeCCC--cEEEEECCCCC
Q 010748          327 SGSFD----RSVVMKD----ARISTHSGFK----WAVAADVE-----SLAWDPHAEHSFVV-SLEDG--TIKGFDIRTAK  386 (502)
Q Consensus       327 s~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~-----~v~~~~~~~~~~~~-~~~dg--~v~i~d~~~~~  386 (502)
                      +....    ..|.+||    +.+++.....    ..+...+.     .+.|+|++..+++. +..+|  .|.+|++.+. 
T Consensus       269 ~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-  347 (719)
T 1z68_A          269 QWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-  347 (719)
T ss_dssp             EEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-
T ss_pred             EEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-
Confidence            65433    2488899    7766655444    34555566     78999998865553 44556  4666676553 


Q ss_pred             CCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC----CCcEEEEECCC--CCeeEEEEec----CCCCcEEEEE
Q 010748          387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST----DKMVKLWDLSN--NQPSCIASRN----PKAGAVFSVA  456 (502)
Q Consensus       387 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~----dg~i~vwd~~~--~~~~~~~~~~----~~~~~v~~~~  456 (502)
                              . ...+..+...+..+.++ ++..+++++..    ++.+++|.+..  +... ...+.    ++...+..+.
T Consensus       348 --------~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~  416 (719)
T 1z68_A          348 --------N-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS-KKCVTCHLRKERCQYYTAS  416 (719)
T ss_dssp             --------T-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC-EEESSTTTTTTTBCBEEEE
T ss_pred             --------c-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC-ceeccCccCCCCCceEEEE
Confidence                    2 34555566667777777 66344444444    47888988754  3210 12222    2556788999


Q ss_pred             EcCCCCcEEEEEeCC--CcEEEEECCCCccc
Q 010748          457 FSEDSPFVLAIGGSK--GKLEIWDTLSDAGI  485 (502)
Q Consensus       457 ~spd~~~ll~sg~~d--g~i~vwd~~~~~~~  485 (502)
                      |+|++++++++++..  ..+.+||+.+++++
T Consensus       417 ~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~  447 (719)
T 1z68_A          417 FSDYAKYYALVCYGPGIPISTLHDGRTDQEI  447 (719)
T ss_dssp             ECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred             ECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence            999999766665544  46889999887754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=1.7e-18  Score=184.78  Aligned_cols=282  Identities=9%  Similarity=0.058  Sum_probs=179.5

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-----
Q 010748          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-----  217 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~-----  217 (502)
                      .++.|+|++++++++ .++     .||+|+...+....+..++... .....+++|       ||+|++||+++.     
T Consensus        19 ~~~~~s~dg~~~~~~-~d~-----~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-------SpDg~~la~~~~~~~~~   84 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADN-----NIVLYNIETGQSYTILSNRTMK-SVNASNYGL-------SPDRQFVYLESDYSKLW   84 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTS-----CEEEEESSSCCEEEEECHHHHH-TTTCSEEEE-------CTTSSEEEEEEEEEECS
T ss_pred             CccEECCCCeEEEEc-CCC-----CEEEEEcCCCcEEEEEcccccc-ccceeeEEE-------CCCCCeEEEEecCceeE
Confidence            368999999766654 344     5566665544222333333221 001245555       899999999876     


Q ss_pred             ----CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          218 ----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       218 ----dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                          ++.|++||+.++..+.+                     .    .   ....+.+++|+|+| ..||+++ ++.|++
T Consensus        85 ~~s~~~~i~~~d~~~g~~~~~---------------------~----~---l~~~~~~~~~SPDG-~~la~~~-~~~i~~  134 (719)
T 1z68_A           85 RYSYTATYYIYDLSNGEFVRG---------------------N----E---LPRPIQYLCWSPVG-SKLAYVY-QNNIYL  134 (719)
T ss_dssp             SSCEEEEEEEEETTTTEECCS---------------------S----C---CCSSBCCEEECSST-TCEEEEE-TTEEEE
T ss_pred             EeecceEEEEEECCCCccccc---------------------e----e---cCcccccceECCCC-CEEEEEE-CCeEEE
Confidence                68999999986432110                     0    0   12458899999995 4777765 789999


Q ss_pred             EeCCCCeeeEee-ccCCCCe-----------------EEEEEcCCCCcEEEEEeCCC-----------------------
Q 010748          294 WDVAAGKCNLTL-EHHTDKV-----------------QAVAWNHHSPQILLSGSFDR-----------------------  332 (502)
Q Consensus       294 wd~~~~~~~~~~-~~h~~~v-----------------~~l~~~~~~~~~l~s~s~dg-----------------------  332 (502)
                      |++.++++.... .++...|                 .+++|+|+| +.|++++.|.                       
T Consensus       135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            999988765433 2333322                 489999999 7888877552                       


Q ss_pred             -----------cEEEEecCCCCCc---cc-----eEeecCCeeEEEeCCCCCCEEEEEeCC----CcEEEEE----CCCC
Q 010748          333 -----------SVVMKDARISTHS---GF-----KWAVAADVESLAWDPHAEHSFVVSLED----GTIKGFD----IRTA  385 (502)
Q Consensus       333 -----------~i~iwd~~~~~~~---~~-----~~~~~~~v~~v~~~~~~~~~~~~~~~d----g~v~i~d----~~~~  385 (502)
                                 .|++||+.++...   ..     ...+...+.+++|+|++ .++++....    ..|.+||    +.++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCC
Confidence                       7889999876532   10     11245568999999985 455554322    2488899    6655


Q ss_pred             CCCCCCCCCccceE--EeccCCCee-----EEEEcCCCCCEEE-EEeCCC--cEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748          386 KSDPDSTSQQSSFT--LHAHDKAVC-----TISYNPLVPNLLA-TGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       386 ~~~~~~~~~~~~~~--~~~h~~~v~-----~l~~sp~~~~~l~-t~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      ..       ..+..  ...|...+.     .+.|+|++..+++ ++..+|  .|.+|++.+++.   ..+..+...+..+
T Consensus       293 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~lt~~~~~v~~~  362 (719)
T 1z68_A          293 DC-------PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQITSGKWEAINI  362 (719)
T ss_dssp             EC-------CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EECSCSSSCEEEE
T ss_pred             ce-------EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---EecccCceEEEEE
Confidence            21       11111  135667676     8899999854444 344555  477778777652   3344455668887


Q ss_pred             EEcCCCCcEEEEEeC----CCcEEEEECCC
Q 010748          456 AFSEDSPFVLAIGGS----KGKLEIWDTLS  481 (502)
Q Consensus       456 ~~spd~~~ll~sg~~----dg~i~vwd~~~  481 (502)
                      .++ ++..+++++..    .+.+++|.+..
T Consensus       363 ~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          363 FRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            777 88766666554    47889998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=1.9e-16  Score=153.02  Aligned_cols=238  Identities=9%  Similarity=0.082  Sum_probs=157.1

Q ss_pred             cccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCC--CcceeeeecCCCCCCCCCCEEE-EecCCCc
Q 010748          144 DMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA--FPLCMAWLDCPLKDREKGNFMA-VGSMEPA  220 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~la-~g~~dg~  220 (502)
                      .++++++++++++++.++     .|++|+....   .+..  ....+.  .|..++|       +|+|++++ ++..++.
T Consensus         4 g~~~~~~~~~~v~~~~~~-----~v~~~d~~~~---~~~~--~~~~~~~~~~~~~~~-------s~dg~~~~v~~~~~~~   66 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPN-----NLHVVDVASD---TVYK--SCVMPDKFGPGTAMM-------APDNRTAYVLNNHYGD   66 (349)
T ss_dssp             CCCCCTTCEEEEEEETTT-----EEEEEETTTT---EEEE--EEECSSCCSSCEEEE-------CTTSSEEEEEETTTTE
T ss_pred             cccccCCCEEEEEeCCCC-----eEEEEECCCC---cEEE--EEecCCCCCCceeEE-------CCCCCEEEEEeCCCCc
Confidence            467889999999998776     7777776554   2221  112222  3556665       78998654 5567899


Q ss_pred             EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC------------
Q 010748          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD------------  288 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d------------  288 (502)
                      |.+||+.++........ +                    .....+...+.+++|+|++ .+|++++.+            
T Consensus        67 i~~~d~~t~~~~~~~~~-~--------------------~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~  124 (349)
T 1jmx_B           67 IYGIDLDTCKNTFHANL-S--------------------SVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKP  124 (349)
T ss_dssp             EEEEETTTTEEEEEEES-C--------------------CSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECC
T ss_pred             EEEEeCCCCcEEEEEEc-c--------------------cccccccccccceEECCCC-CEEEEEcccccccccccccCC
Confidence            99999976432211100 0                    0000013458899999995 477777755            


Q ss_pred             CcEEEEeCCCCee---eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---------------
Q 010748          289 KQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---------------  350 (502)
Q Consensus       289 g~v~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------------  350 (502)
                      +.|.+||+.+++.   +..+. +...+.+++|+|++ + +++++  +.|.+||+.+.+.......               
T Consensus       125 ~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          125 PRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CeEEEEECCCccccceeeecc-CCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence            8999999988543   33444 34468899999999 5 45543  4499999887653221100               


Q ss_pred             -----------------------------------------------------ecCCeeEEEeCC-CCCCEEEEEeCCCc
Q 010748          351 -----------------------------------------------------VAADVESLAWDP-HAEHSFVVSLEDGT  376 (502)
Q Consensus       351 -----------------------------------------------------~~~~v~~v~~~~-~~~~~~~~~~~dg~  376 (502)
                                                                           ....+..++|+| ++. +++++  ++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~  276 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNR  276 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCe
Confidence                                                                 011345677889 776 56666  889


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      |.+||+.+.         +.+..+.. ...+.+++|+|++ .+|++++.++.|++||+.+++.
T Consensus       277 v~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          277 LAKYDLKQR---------KLIKAANL-DHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EEEEETTTT---------EEEEEEEC-SSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTEE
T ss_pred             EEEEECccC---------eEEEEEcC-CCCccceEECCCC-CEEEEecCCCeEEEEeccccce
Confidence            999999876         44444443 3457899999998 6666678889999999998874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=1.2e-16  Score=157.45  Aligned_cols=300  Identities=11%  Similarity=0.015  Sum_probs=173.9

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+.+++|+|+|+.|+.+...+.  ...||+++........+..++.    ....+..|       +|+|++|+.++.++
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g--~~~l~~~d~~~~~~~~l~~~~~----~~~~~~~~-------spdg~~l~~~~~~~  102 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDG--NRNYYLLNLETQQAVQLTEGKG----DNTFGGFI-------STDERAFFYVKNEL  102 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTS--SCEEEEEETTTTEEEECCCSSC----BCTTTCEE-------CTTSSEEEEEETTT
T ss_pred             eeeecCcCCCCCCEEEEEEecCC--CceEEEEECCCCcEEEeecCCC----CccccceE-------CCCCCEEEEEEcCC
Confidence            34788999999999988876532  2367888765541111111110    01112334       89999999999999


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc----cceeeEEeccCCCcEEEEE-----ecCCc
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT----DSVLGLAWNKEFRNILASA-----SADKQ  290 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~V~~l~~~~~~~~~l~sg-----s~dg~  290 (502)
                      .|++|++.++..... .....  .       .. . ......+....    .....+.|+|++. .++.+     ..+..
T Consensus       103 ~l~~~d~~~~~~~~~-~~~~~--~-------~~-~-~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~  169 (396)
T 3c5m_A          103 NLMKVDLETLEEQVI-YTVDE--E-------WK-G-YGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCR  169 (396)
T ss_dssp             EEEEEETTTCCEEEE-EECCT--T-------EE-E-EEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEE
T ss_pred             cEEEEECCCCCcEEE-Eeccc--c-------cC-C-CCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcce
Confidence            999999976532111 00000  0       00 0 00000000000    0001146778754 44433     45678


Q ss_pred             EEEEeCCCCeeeEeeccCCCCeEEEEEcC-CCCcEEEEEeCC------CcEEEEecCCCCCccceEee-cCCeeEEEeCC
Q 010748          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFD------RSVVMKDARISTHSGFKWAV-AADVESLAWDP  362 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~  362 (502)
                      |.+||+.+++..... .+...+..+.|+| ++ ..|+.++.+      ..|.+|++............ ...+..++|+|
T Consensus       170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp  247 (396)
T 3c5m_A          170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP  247 (396)
T ss_dssp             EEEEETTTCCEEEEE-EESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred             EEEEECCCCcEEeec-cCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence            999999988765544 4677899999999 66 555555443      36888888765433222211 22477889999


Q ss_pred             CCCCEEEEEeCC----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC-CCCCEEEEEe-------------
Q 010748          363 HAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPNLLATGS-------------  424 (502)
Q Consensus       363 ~~~~~~~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~t~s-------------  424 (502)
                      ++..+++++..+    +.|++||+.++         .. ..+..... .. +.|+| ++ .++++++             
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g---------~~-~~l~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          248 DGSAMAYVSYFKGQTDRVIYKANPETL---------EN-EEVMVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             TSSCEEEEEEETTTCCEEEEEECTTTC---------CE-EEEEECCS-EE-EEEECSSS-SEEEEEECCC----------
T ss_pred             CCCEEEEEecCCCCccceEEEEECCCC---------Ce-EEeeeCCC-CC-CCccCCCC-ceEEEecCCcceeecccccc
Confidence            987655554432    34999999875         21 11221122 33 88999 88 6777654             


Q ss_pred             ---CCCcEEEEECCCCCeeEEEEecCCC--------CcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          425 ---TDKMVKLWDLSNNQPSCIASRNPKA--------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       425 ---~dg~i~vwd~~~~~~~~~~~~~~~~--------~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                         .++.|++||+.+++...+.......        ..+..++|+|++.++++++..++...||.+.
T Consensus       315 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          315 NIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence               3467999999887643333222100        0255678999999755555556665666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.73  E-value=1.1e-15  Score=150.15  Aligned_cols=242  Identities=10%  Similarity=0.018  Sum_probs=160.6

Q ss_pred             CCCCCCCCEEEEecC-CCc--EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748          203 LKDREKGNFMAVGSM-EPA--IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       203 ~~~s~~~~~la~g~~-dg~--I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      ++|+|+|++||.++. +|.  |.+||+.++...                           ....+|...+..++|+|+ +
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---------------------------~lt~~~~~~~~~~~~spd-g   92 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---------------------------QLTEGRGDNTFGGFLSPD-D   92 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---------------------------ECCCSSCBCSSSCEECTT-S
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---------------------------EeeeCCCCCccceEEcCC-C
Confidence            456999999999887 664  777787653221                           122345556667889999 4


Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEE--cCCCCcEEEEE----------------------eCCCcEE
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--NHHSPQILLSG----------------------SFDRSVV  335 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~----------------------s~dg~i~  335 (502)
                      ..|+.++.++.|++||+.+++....+..+...+....|  +|++ .+++..                      ..+..|.
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM  171 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEE
Confidence            58888888899999999999877766666665654444  7888 666532                      2447899


Q ss_pred             EEecCCCCCccceEeecCCeeEEEeCC-CCCCEEEEEeC-----CCcEEEEECCCCCCCCCCCCCccceEEeccC--CCe
Q 010748          336 MKDARISTHSGFKWAVAADVESLAWDP-HAEHSFVVSLE-----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAV  407 (502)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v  407 (502)
                      +||+.++.... .......+..++|+| ++..++++...     ...|.++|+...          ....+..+.  ..+
T Consensus       172 ~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~----------~~~~l~~~~~~~~~  240 (388)
T 3pe7_A          172 RVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT----------NMRKVKTHAEGESC  240 (388)
T ss_dssp             EEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC----------CCEESCCCCTTEEE
T ss_pred             EEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC----------ceEEeeeCCCCccc
Confidence            99998876433 445667789999999 87644344432     337888887653          233343344  357


Q ss_pred             eEEEEcCCCCCEEEEEeCCC----cEEEEECCCCCeeEEEEecCCCCcE---EEEEEcCCCCcEEEEE--------eCCC
Q 010748          408 CTISYNPLVPNLLATGSTDK----MVKLWDLSNNQPSCIASRNPKAGAV---FSVAFSEDSPFVLAIG--------GSKG  472 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~v---~~~~~spd~~~ll~sg--------~~dg  472 (502)
                      ..++|+|+|..+++++..++    .|++||+.+++...+.....+....   ..+.|+|+|++++++.        ..+.
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  320 (388)
T 3pe7_A          241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP  320 (388)
T ss_dssp             EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred             ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence            78999999844444443322    3999999998865555554311100   1136999999755433        4566


Q ss_pred             cEEEEECCCCcc
Q 010748          473 KLEIWDTLSDAG  484 (502)
Q Consensus       473 ~i~vwd~~~~~~  484 (502)
                      .|++||+.+++.
T Consensus       321 ~i~~~d~~~~~~  332 (388)
T 3pe7_A          321 FLYVFNMKNGTQ  332 (388)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEeccCCce
Confidence            899999988664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=6.4e-15  Score=138.47  Aligned_cols=237  Identities=14%  Similarity=0.148  Sum_probs=164.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec-cCCCcEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~s  284 (502)
                      +++++++++.+.++.|.+|+... .....   +..                  .....+|...+.++++. ++ +.++++
T Consensus        38 ~~~g~l~v~~~~~~~i~~~d~~g-~~~~~---~~~------------------~~~~~~~~~~p~~i~~~~~~-g~l~v~   94 (286)
T 1q7f_A           38 NAQNDIIVADTNNHRIQIFDKEG-RFKFQ---FGE------------------CGKRDSQLLYPNRVAVVRNS-GDIIVT   94 (286)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTS-CEEEE---ECC------------------BSSSTTCBSSEEEEEEETTT-TEEEEE
T ss_pred             CCCCCEEEEECCCCEEEEECCCC-cEEEE---ecc------------------cCCCcccccCceEEEEEcCC-CeEEEE
Confidence            68899888888899999999762 21111   000                  00012455678999995 55 556665


Q ss_pred             Eec-CCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---ecCCeeEEE
Q 010748          285 ASA-DKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLA  359 (502)
Q Consensus       285 gs~-dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~v~  359 (502)
                      ... ++.|.+|+ .+++.+..+. .+...+.++++.+++ +++++...++.|.+|+.... ... ...   ....+..++
T Consensus        95 ~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~-~~~~~~~~~~p~~i~  170 (286)
T 1q7f_A           95 ERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VLH-KFGCSKHLEFPNGVV  170 (286)
T ss_dssp             ECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC-EEE-EEECTTTCSSEEEEE
T ss_pred             cCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EEE-EeCCCCccCCcEEEE
Confidence            543 78999999 6677777664 344678999999998 78888778899999996532 221 222   224588999


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc--CCCeeEEEEcCCCCCEEEEEeCCC-cEEEEECCC
Q 010748          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDK-MVKLWDLSN  436 (502)
Q Consensus       360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg-~i~vwd~~~  436 (502)
                      +++++. ++++...++.|++|+...          ..+..+..+  ...+.++++++++ +++++...++ .|++|+.. 
T Consensus       171 ~~~~g~-l~v~~~~~~~i~~~~~~g----------~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-  237 (286)
T 1q7f_A          171 VNDKQE-IFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-  237 (286)
T ss_dssp             ECSSSE-EEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-
T ss_pred             ECCCCC-EEEEECCCCEEEEEcCCC----------CEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-
Confidence            999765 666667789999999753          334444333  3578999999988 8888887776 99999965 


Q ss_pred             CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      ++.............+.+++++|++. ++++ +.+++|++|++.....
T Consensus       238 g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          238 GQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCCCC
T ss_pred             CCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEcccccc
Confidence            44322233333334588999999997 5666 5789999999866443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.72  E-value=5.5e-15  Score=144.25  Aligned_cols=249  Identities=9%  Similarity=0.037  Sum_probs=156.8

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE--EEEec-
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF--MAVGS-  216 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--la~g~-  216 (502)
                      ..+..++|+|++++|++++.+    .+.+|..+. .+   .+...........|.++.       ++|+|++  ++++. 
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~----~v~~~~~~~-~g---~~~~~~~~~~~g~~~~~~-------~spdg~~l~~~~~~~  104 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK----KWSSFAVKS-PT---EIVHEASHPIGGHPRAND-------ADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT----EEEEEEEEE-TT---EEEEEEEEECCSSGGGGC-------TTSCCEEEEEEECSS
T ss_pred             CCCcEEEECCCCCEEEEEccc----eEEEEEECC-CC---CEEEeeEeecCCCCccEE-------ECCCCCEEEEEEecC
Confidence            357789999999999887754    567776652 22   221111111112244443       4899994  55653 


Q ss_pred             ------------CCCcEEEeeCCC-CCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          217 ------------MEPAIEIWDLDV-IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       217 ------------~dg~I~iwdl~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                                  .+|.+.+|+++. +.......                       .....+...+.+++|+|+++ +|+
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~-----------------------~~~~~~~~~~~~~~~spdG~-~l~  160 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ-----------------------NYEYQENTGIHGMVFDPTET-YLY  160 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE-----------------------EEECCTTCCEEEEEECTTSS-EEE
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEe-----------------------eEEeCCCCcceEEEECCCCC-EEE
Confidence                        689999999963 21111000                       00012456789999999955 566


Q ss_pred             EEe-cCCcEEEEeCC-CCeee--Eeec--cCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEecCC--CCCcc---ceEee
Q 010748          284 SAS-ADKQVKIWDVA-AGKCN--LTLE--HHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARI--STHSG---FKWAV  351 (502)
Q Consensus       284 sgs-~dg~v~vwd~~-~~~~~--~~~~--~h~~~v~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~--~~~~~---~~~~~  351 (502)
                      ++. .++.|++|++. +++..  ..+.  .|...+..++|+|++ ++|++++ .++.|.+|++..  ++...   .....
T Consensus       161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~  239 (365)
T 1jof_A          161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence            554 46899999998 67643  3333  245679999999999 6676666 478999998753  33211   01111


Q ss_pred             -------cC------CeeEEE-eCCCCCCEEEEEeC-CC-----cEEEEECCCCCCCCCCCCCccce---EEeccCCCee
Q 010748          352 -------AA------DVESLA-WDPHAEHSFVVSLE-DG-----TIKGFDIRTAKSDPDSTSQQSSF---TLHAHDKAVC  408 (502)
Q Consensus       352 -------~~------~v~~v~-~~~~~~~~~~~~~~-dg-----~v~i~d~~~~~~~~~~~~~~~~~---~~~~h~~~v~  408 (502)
                             ..      .+..++ |+|++. +++++.. .+     .|.+|++...        .....   ....+...+.
T Consensus       240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~~--------g~~~~~~~~~~~~~~~~~  310 (365)
T 1jof_A          240 PPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRDC--------GSIEKQLFLSPTPTSGGH  310 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECTT--------SCEEEEEEEEECSSCCTT
T ss_pred             CCCcCCcccccccccccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECCC--------CCEEEeeeeeecCCCCcc
Confidence                   11      478899 999987 4555443 33     8999999632        12221   2334555678


Q ss_pred             EEEEcC---CCCCEEEEEeC-CCcEEEEECCCCC
Q 010748          409 TISYNP---LVPNLLATGST-DKMVKLWDLSNNQ  438 (502)
Q Consensus       409 ~l~~sp---~~~~~l~t~s~-dg~i~vwd~~~~~  438 (502)
                      .++|+|   ++ ++|++++. ++.|++|++....
T Consensus       311 ~~a~sp~~~dg-~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          311 SNAVSPCPWSD-EWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CCCEEECTTCT-TEEEEECSSSCEEEEEEEETTE
T ss_pred             cceecCCCcCC-CEEEEEEcCCCeEEEEEEchhh
Confidence            899999   67 78888776 4899999987653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=2.8e-15  Score=144.11  Aligned_cols=202  Identities=19%  Similarity=0.126  Sum_probs=147.8

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe-eeEee---------ccCCCCeEEEEEcC-CCCcEEEEEe-CC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTL---------EHHTDKVQAVAWNH-HSPQILLSGS-FD  331 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-~~~~~---------~~h~~~v~~l~~~~-~~~~~l~s~s-~d  331 (502)
                      ++-.....|+++|++ +++++.+.++.|++|+..... .+..+         ..+-.....|+++| ++ .++++.+ .+
T Consensus        88 ~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~  165 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCN  165 (329)
T ss_dssp             TTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSC
T ss_pred             CccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCC
Confidence            344578899999994 588888889999999976442 45555         23445789999999 55 7888876 69


Q ss_pred             CcEEEEecCCCCCccceEee----------cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-
Q 010748          332 RSVVMKDARISTHSGFKWAV----------AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-  400 (502)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~~----------~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-  400 (502)
                      +.|++|+.. +.........          -..+..++++|++..++++...++.|++|+..++         ..+..+ 
T Consensus       166 ~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---------~~~~~~~  235 (329)
T 3fvz_A          166 SRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---------EFVREIK  235 (329)
T ss_dssp             CEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------CEEEEEC
T ss_pred             CeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------cEEEEEe
Confidence            999999943 3332211111          1237899999985667788888999999999865         445555 


Q ss_pred             -eccCCCeeEEEEcCCCCCEEEEEe-------CCCcEEEEECCCCCeeEEEEe---cCCCCcEEEEEEcCCCCcEEEEEe
Q 010748          401 -HAHDKAVCTISYNPLVPNLLATGS-------TDKMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       401 -~~h~~~v~~l~~sp~~~~~l~t~s-------~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~spd~~~ll~sg~  469 (502)
                       ..+...+.+++|+| + .++++.+       .+..|++|++.+++.  +..+   ..+...+..++++|+|. ++++..
T Consensus       236 ~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~  310 (329)
T 3fvz_A          236 HASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGT-VYIGDA  310 (329)
T ss_dssp             CTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSE-EEEEES
T ss_pred             ccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCC-EEEEEC
Confidence             34566788999999 3 4444433       345899999998873  4444   35667799999999995 788888


Q ss_pred             CCCcEEEEECCCC
Q 010748          470 SKGKLEIWDTLSD  482 (502)
Q Consensus       470 ~dg~i~vwd~~~~  482 (502)
                      .+++|++|++...
T Consensus       311 ~~~~I~~~~~~~~  323 (329)
T 3fvz_A          311 HTNTVWKFTLTEK  323 (329)
T ss_dssp             SSCCEEEEEEEEC
T ss_pred             CCCEEEEEeCCcc
Confidence            8999999998653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=9.7e-15  Score=142.16  Aligned_cols=271  Identities=10%  Similarity=0.066  Sum_probs=171.2

Q ss_pred             EEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC----------CCcEEEeeCCCCCCcCcce
Q 010748          167 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----------EPAIEIWDLDVIDEVQPHV  236 (502)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~----------dg~I~iwdl~~~~~~~~~~  236 (502)
                      .|++|+....   .+.  ........| .+.+       +|+|++|++++.          ++.|.+||+.+......+.
T Consensus        32 ~v~v~D~~t~---~~~--~~i~~g~~p-~i~~-------spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~   98 (361)
T 2oiz_A           32 RVHVYDYTNG---KFL--GMVPTAFNG-HVQV-------SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS   98 (361)
T ss_dssp             EEEEEETTTC---CEE--EEEECCEEE-EEEE-------CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCC---eEE--EEecCCCCC-ceEE-------CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence            7777776554   332  222233334 4444       899999998863          5679999987654433222


Q ss_pred             ecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec--CCcEEEEeCCCCeeeEe-eccCCCCeE
Q 010748          237 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWDVAAGKCNLT-LEHHTDKVQ  313 (502)
Q Consensus       237 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--dg~v~vwd~~~~~~~~~-~~~h~~~v~  313 (502)
                      +..+                     ...+......++|+|+++ +|+++..  +++|.+||+.+++.+.. +.. . ...
T Consensus        99 ~~~~---------------------~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~  154 (361)
T 2oiz_A           99 LPPK---------------------RVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCW  154 (361)
T ss_dssp             ECTT---------------------BCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEE
T ss_pred             cCcc---------------------ccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecC-C-Ccc
Confidence            1110                     001334577899999955 6666653  68999999999998888 653 2 233


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce------EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCC
Q 010748          314 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS  387 (502)
Q Consensus       314 ~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~  387 (502)
                      .+.+.|.+...+++.+.||.+.+|++.........      +........+.+.+++. .++..+.++.|.++|+.....
T Consensus       155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~  233 (361)
T 2oiz_A          155 SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKD-KAHFVSYYGNVYSADFSGDEV  233 (361)
T ss_dssp             EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSS-EEEEEBTTSEEEEEECSSSSC
T ss_pred             eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCC-EEEEEeCCCeEEEEEecCCCc
Confidence            46678877678899999999999998653222101      01111111222344444 455566788999999875411


Q ss_pred             CCCCCCCccceEEec------c----CCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEECCCCCeeEEEEecC
Q 010748          388 DPDSTSQQSSFTLHA------H----DKAVCTISYNPLVPNLLATGS----------TDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       388 ~~~~~~~~~~~~~~~------h----~~~v~~l~~sp~~~~~l~t~s----------~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                             .....+..      +    ......++|+|++..++++..          ..+.|.+||+.+.+  .+..+..
T Consensus       234 -------~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~  304 (361)
T 2oiz_A          234 -------KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPG  304 (361)
T ss_dssp             -------EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEEC
T ss_pred             -------eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEec
Confidence                   11111110      0    111223789999744444444          13479999999987  4555555


Q ss_pred             CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--cccccc
Q 010748          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD--AGISNR  488 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~--~~~~~~  488 (502)
                      +.  +.+++|+|+|++ |++++. +.|.|||+.++  +.+.++
T Consensus       305 ~~--p~~ia~spdg~~-l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          305 RD--ALSMTIDQQRNL-MLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             TT--CCEEEEETTTTE-EEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             CC--eeEEEECCCCCE-EEEeCC-CeEEEEECCCCcceeeEEe
Confidence            54  899999999995 666666 99999999999  877764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=4.3e-16  Score=166.68  Aligned_cols=242  Identities=12%  Similarity=0.147  Sum_probs=156.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+|.+|+++  ++.|++|++.++....   ++.++                   .+..+......++|||++ .+|+.+
T Consensus        25 ~~dg~~~~~~--~~~i~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~Spdg-~~l~~~   79 (740)
T 4a5s_A           25 ISDHEYLYKQ--ENNILVFNAEYGNSSV---FLENS-------------------TFDEFGHSINDYSISPDG-QFILLE   79 (740)
T ss_dssp             CSSSEEEEEE--TTEEEEEETTTCCEEE---EECTT-------------------TTTTCCSCCCEEEECTTS-SEEEEE
T ss_pred             CCCCcEEEEc--CCcEEEEECCCCceEE---EEech-------------------hhhhhcccccceEECCCC-CEEEEE
Confidence            7999999997  8999999998754321   11110                   001122233458899995 577777


Q ss_pred             ecC---------CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eec---
Q 010748          286 SAD---------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVA---  352 (502)
Q Consensus       286 s~d---------g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~---  352 (502)
                      +.+         +.+.+||+.++++. .+..|...+...+|+|+| +.|+.+ .++.|++|++.++....... ...   
T Consensus        80 ~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~  156 (740)
T 4a5s_A           80 YNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (740)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             ECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence            776         56679999998865 466678899999999999 667666 47899999998766443221 111   


Q ss_pred             --------------CCeeEEEeCCCCCCEEEEEeCCC-----------------------------------cEEEEECC
Q 010748          353 --------------ADVESLAWDPHAEHSFVVSLEDG-----------------------------------TIKGFDIR  383 (502)
Q Consensus       353 --------------~~v~~v~~~~~~~~~~~~~~~dg-----------------------------------~v~i~d~~  383 (502)
                                    +....+.|+|+|..++++...++                                   .|++||+.
T Consensus       157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~  236 (740)
T 4a5s_A          157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD  236 (740)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT
T ss_pred             ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC
Confidence                          12245899999875444433322                                   46667776


Q ss_pred             C---CCCCCCCCCCccceEEe------ccCCCeeEEEEcCCCCCEEEEEeC----CCcEEEEECCCCC-------eeEEE
Q 010748          384 T---AKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGST----DKMVKLWDLSNNQ-------PSCIA  443 (502)
Q Consensus       384 ~---~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~----dg~i~vwd~~~~~-------~~~~~  443 (502)
                      +   +..       .....+.      +|...+..++|+|++ ++++....    +..|++||+.+++       ...+.
T Consensus       237 ~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~  308 (740)
T 4a5s_A          237 SLSSVTN-------ATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI  308 (740)
T ss_dssp             SCCSSSC-------CCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred             CCCCCCc-------ceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence            5   310       0223333      277789999999998 65555432    3369999998876       11111


Q ss_pred             EecCCCCcEE-----EEEEcCCCCcEEEEEe-CCC--cEEEEECCCCcc
Q 010748          444 SRNPKAGAVF-----SVAFSEDSPFVLAIGG-SKG--KLEIWDTLSDAG  484 (502)
Q Consensus       444 ~~~~~~~~v~-----~~~~spd~~~ll~sg~-~dg--~i~vwd~~~~~~  484 (502)
                       ...+.+.|.     ...|+|||+.++...+ .+|  .|++|++.++..
T Consensus       309 -~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          309 -EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             -EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             -eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence             133444443     6889999996442444 344  588888876554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.69  E-value=4.5e-15  Score=158.73  Aligned_cols=287  Identities=10%  Similarity=0.078  Sum_probs=171.3

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC--
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--  218 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d--  218 (502)
                      ...++.|+|++.+|+++  ++     .|+.|+...+....+...|...  .  ..+.+  ..+.|||||++|+.++.+  
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~-----~i~~~~~~~~~~~~~~~~~~~~--~--~~~~~--~~~~~Spdg~~l~~~~~~~~   84 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--EN-----NILVFNAEYGNSSVFLENSTFD--E--FGHSI--NDYSISPDGQFILLEYNYVK   84 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TT-----EEEEEETTTCCEEEEECTTTTT--T--CCSCC--CEEEECTTSSEEEEEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CC-----cEEEEECCCCceEEEEechhhh--h--hcccc--cceEECCCCCEEEEEECCee
Confidence            35678999999988886  54     5666665544222233333211  1  11111  012239999999998876  


Q ss_pred             -------CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          219 -------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       219 -------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                             +.+.+||+.++...                            .+..|...+...+|||+| +.||.+ .++.|
T Consensus        85 ~~r~~~~~~~~~~d~~~~~~~----------------------------~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i  134 (740)
T 4a5s_A           85 QWRHSYTASYDIYDLNKRQLI----------------------------TEERIPNNTQWVTWSPVG-HKLAYV-WNNDI  134 (740)
T ss_dssp             CSSSCEEEEEEEEETTTTEEC----------------------------CSSCCCTTEEEEEECSST-TCEEEE-ETTEE
T ss_pred             eEEEccceEEEEEECCCCcEE----------------------------EcccCCCcceeeEECCCC-CEEEEE-ECCeE
Confidence                   56679999864321                            233567789999999995 467776 46899


Q ss_pred             EEEeCCCCeeeEe-eccCCCCe-----------------EEEEEcCCCCcEEEEEeCCC---------------------
Q 010748          292 KIWDVAAGKCNLT-LEHHTDKV-----------------QAVAWNHHSPQILLSGSFDR---------------------  332 (502)
Q Consensus       292 ~vwd~~~~~~~~~-~~~h~~~v-----------------~~l~~~~~~~~~l~s~s~dg---------------------  332 (502)
                      ++|++.+++..+. ..++...+                 .++.|+|+| +.|+.++.|.                     
T Consensus       135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~  213 (740)
T 4a5s_A          135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKT  213 (740)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred             EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence            9999988875442 22333222                 358999999 7777665321                     


Q ss_pred             ---------------cEEEEecCC---CCC--ccceE------eecCCeeEEEeCCCCCCEEEEEeC---CCcEEEEECC
Q 010748          333 ---------------SVVMKDARI---STH--SGFKW------AVAADVESLAWDPHAEHSFVVSLE---DGTIKGFDIR  383 (502)
Q Consensus       333 ---------------~i~iwd~~~---~~~--~~~~~------~~~~~v~~v~~~~~~~~~~~~~~~---dg~v~i~d~~  383 (502)
                                     +|.+||+.+   +..  .....      .+...+..++|+|++..+++....   +..|.+||+.
T Consensus       214 ~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~  293 (740)
T 4a5s_A          214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD  293 (740)
T ss_dssp             EEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred             eeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence                           478888887   532  11111      134458899999997633333332   2369999998


Q ss_pred             CCCCCCCCCCCccceEE--eccCCCee-----EEEEcCCCCCEEE-EEeC-CC--cEEEEECCCCCeeEEEEecCCCCcE
Q 010748          384 TAKSDPDSTSQQSSFTL--HAHDKAVC-----TISYNPLVPNLLA-TGST-DK--MVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       384 ~~~~~~~~~~~~~~~~~--~~h~~~v~-----~l~~sp~~~~~l~-t~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      ++......   ..+..+  ..|...|.     .+.|+|+| +.|+ ..+. +|  .|++|++.++...   .+......|
T Consensus       294 tg~~~~~~---~~~~~l~~~~~~~~v~~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~~~~~---~lT~g~~~v  366 (740)
T 4a5s_A          294 ESSGRWNC---LVARQHIEMSTTGWVGRFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDKKDCT---FITKGTWEV  366 (740)
T ss_dssp             TTTTEEEE---CGGGCEEEECSSSCSSSSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTCSSCE---ESCCSSSCE
T ss_pred             CCccccce---eEEEEeeeccCCceEccCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCCCceE---ecccCCEEE
Confidence            86200000   111222  45665554     78999998 5554 5553 44  5888898877632   233334456


Q ss_pred             EEEEEcCCCCcEEEEEeC----CCcEEEEEC
Q 010748          453 FSVAFSEDSPFVLAIGGS----KGKLEIWDT  479 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~----dg~i~vwd~  479 (502)
                      ..+.+ +++..++++++.    .+...||.+
T Consensus       367 ~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          367 IGIEA-LTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             EEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence            55442 446656666654    234455544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=3.6e-14  Score=151.04  Aligned_cols=289  Identities=10%  Similarity=0.031  Sum_probs=182.7

Q ss_pred             CCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC-----cEEE
Q 010748          149 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP-----AIEI  223 (502)
Q Consensus       149 p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg-----~I~i  223 (502)
                      |+|..++.....+....-.+|..+...+.. .+..........-...+    ..+.|||+|++||.++.++     .|++
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~----~~~~~SPDg~~la~~~~~~G~~~~~i~v  155 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVAL----RGYAFSEDGEYFAYGLSASGSDWVTIKF  155 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEE----EEEEECTTSSEEEEEEEETTCSCEEEEE
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEE----EEEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            888888887766544344677776543311 11111111111100011    1133489999999876543     8999


Q ss_pred             eeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc-------------
Q 010748          224 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ-------------  290 (502)
Q Consensus       224 wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~-------------  290 (502)
                      ||+.++.....                          .  .....+.+++|+|++ ..|+.++.++.             
T Consensus       156 ~d~~tg~~~~~--------------------------~--~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          156 MKVDGAKELPD--------------------------V--LERVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EETTTTEEEEE--------------------------E--EEEECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EECCCCCCCcc--------------------------c--ccCcccceEEEEeCC-CEEEEEEECCccccccccccccCC
Confidence            99986543210                          0  111236789999995 57777777665             


Q ss_pred             ---EEEEeCCCCee----eEeeccCCCCeEEEEEcCCCCcEEEEEeC-----CCcEEEEecCC------CC-CccceEee
Q 010748          291 ---VKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARI------ST-HSGFKWAV  351 (502)
Q Consensus       291 ---v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-----dg~i~iwd~~~------~~-~~~~~~~~  351 (502)
                         |++|++.+++.    +.....|...+.++.|+|++ ++|+.++.     +..|.+||+.+      +. .......+
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence               99999988752    22333356668899999999 66665553     56899999986      43 23323333


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCC---CcEEEEECCCCCCCCCCCCCccceEEeccCC--CeeEEEEcCCCCCEEEEEeCC
Q 010748          352 AADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ...+.. .|+|++..+++.+..+   +.|.+||+.+..       ......+..|..  .+..++|++.+ .++++...+
T Consensus       286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~  356 (710)
T 2xdw_A          286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE-------ESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHD  356 (710)
T ss_dssp             SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC-------GGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEET
T ss_pred             CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC-------cccceeccCCCCCCeEEEEEEEcCC-EEEEEEEEC
Confidence            444444 4788877555555433   369999987651       012345555544  68889998655 788888888


Q ss_pred             Cc--EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC---CCcEEEEECCCCc
Q 010748          427 KM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS---KGKLEIWDTLSDA  483 (502)
Q Consensus       427 g~--i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~---dg~i~vwd~~~~~  483 (502)
                      +.  |++|++.+++  .+..+..+.+.+..+.++|++..++++.++   .+.|++||+.+++
T Consensus       357 g~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            85  5667876665  344555667889999999998755554443   3689999998876

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=6.7e-15  Score=155.40  Aligned_cols=297  Identities=9%  Similarity=0.007  Sum_probs=178.4

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccC----CCcceeeeecCCCCCCCCCCE-E
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP----AFPLCMAWLDCPLKDREKGNF-M  212 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~-l  212 (502)
                      |...+..++|+++..+++.+..+. .....||.+... +....+..+......    .......|.     .||+|++ |
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~SPDg~~~l   94 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAE-AGRATLVRRRAD-GAEESALPAPWNVRNRVFEYSGFPWAGV-----PRPAGGPLL   94 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTT-TTEEEEEEECTT-SCEEESSCTTCCBCCCGGGTCCCCEEEE-----CCSSSSCEE
T ss_pred             cCCccceeEEcCCeEEEEecCccc-CCcEEEEEECCC-CCcceeCCCCccccccccccCCccceee-----eecCCCeEE
Confidence            566788999998765555553222 135678887332 211112122111000    000012231     1489998 7


Q ss_pred             EEecC-CCcEEEeeCC--C-CCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          213 AVGSM-EPAIEIWDLD--V-IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       213 a~g~~-dg~I~iwdl~--~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +.++. +..|.+|++.  . +. ...+.  .                    .....|...+.+++|+|++ ..|++++.+
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~--~--------------------~~~~~~~~~~~~~~~spDg-~~l~~~~~~  150 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-PRPLT--P--------------------VSAVGGGLRWADPVLLPER-GEVWCMAEE  150 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-CEECS--C--------------------CCCSTTCEEEEEEEEETTT-TEEEEEEEE
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-CEecc--C--------------------CccCCCCccccCcEECCCC-CEEEEEEec
Confidence            76654 4566666654  1 11 10000  0                    0000166788999999995 577777776


Q ss_pred             ----------CcEEEEeCCC------CeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEecC-CC
Q 010748          289 ----------KQVKIWDVAA------GKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFD--------RSVVMKDAR-IS  342 (502)
Q Consensus       289 ----------g~v~vwd~~~------~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~d--------g~i~iwd~~-~~  342 (502)
                                ..|++||+.+      ++. ..+. .+...+..++|+|+| +.|+.++.+        ..|.+||+. ++
T Consensus       151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             ECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             ccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence                      5899999988      554 4454 566788889999999 777766644        479999998 45


Q ss_pred             ---CCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccC-CC--------ee
Q 010748          343 ---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KA--------VC  408 (502)
Q Consensus       343 ---~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~--------v~  408 (502)
                         ........+...+..+.|+|++. +++++..++  .|.+||+.++         . ...+..+. ..        +.
T Consensus       229 ~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~---------~-~~~l~~~~~~~~~p~w~~~~~  297 (662)
T 3azo_A          229 RFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATG---------A-ATQLCRREEEFAGPLWTPGMR  297 (662)
T ss_dssp             CEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTC---------C-EEESSCCSSBSSCCCCSTTCC
T ss_pred             cccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCC---------c-eeecccccccccCccccccCc
Confidence               22222223357899999999987 888888888  5666666443         1 12222221 11        56


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEE--ECCCCCeeEEEEecCCCCcEEEE-EEcCCCCcEEEEEeCCC--cEEEEECCCCc
Q 010748          409 TISYNPLVPNLLATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSV-AFSEDSPFVLAIGGSKG--KLEIWDTLSDA  483 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~v~~~-~~spd~~~ll~sg~~dg--~i~vwd~~~~~  483 (502)
                      +++|+|++ .++++++. +.++||  |+.+++   +..+..+.+.+..+ +++++. .++++++.+.  .|.+||+.+++
T Consensus       298 ~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          298 WFAPLANG-LIAVVHGK-GAAVLGILDPESGE---LVDAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SEEECTTS-CEEEEEBS-SSCEEEEEETTTTE---EEECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEEEEETTTCC
T ss_pred             eEeEeCCC-EEEEEEEc-CccEEEEEECCCCc---EEEecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEEEEECCCCc
Confidence            78999987 89999988 999999  555554   45566667777776 554433 2344445454  45666776665


Q ss_pred             c
Q 010748          484 G  484 (502)
Q Consensus       484 ~  484 (502)
                      .
T Consensus       372 ~  372 (662)
T 3azo_A          372 A  372 (662)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=1e-13  Score=133.18  Aligned_cols=269  Identities=9%  Similarity=0.030  Sum_probs=172.3

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..|.++.|+|....++....++   .+++|.-.       .+....  .-...+.++.|       +++|++++++..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~--~~~~~~~~~~~-------~~~g~l~~~~~~~~   66 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISES---ELQTITAE-------PWLEIS--KKGLQLEGLNF-------DRQGQLFLLDVFEG   66 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGG---GSCEEECE-------EEEEEE--SSCCCEEEEEE-------CTTSCEEEEETTTC
T ss_pred             cccceeeecCCccceeEEeecc---cCcccccc-------eeEEEe--ccCccccCcEE-------CCCCCEEEEECCCC
Confidence            3477888898888777665554   34444111       111100  01123456666       78899888888899


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC----CcEEEEe
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD----KQVKIWD  295 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d----g~v~vwd  295 (502)
                      .|.+|+..+.....                           ....+...+.+++|++++ .+++++..+    +.|.+||
T Consensus        67 ~i~~~d~~~~~~~~---------------------------~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           67 NIFKINPETKEIKR---------------------------PFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EEEEECTTTCCEEE---------------------------EEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEEC
T ss_pred             EEEEEeCCCCcEEE---------------------------EeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEe
Confidence            99999986532110                           111345679999999994 567666665    6899999


Q ss_pred             CCCCeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeC------CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748          296 VAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       296 ~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  367 (502)
                      ..+++....+.  .+...+.++.++|++ +++++...      .+.|..++..+..... .......+..++|+|++..+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l  196 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVL  196 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEE
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEE
Confidence            98876543332  245679999999998 66666553      3556666655443322 22334567899999987645


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCCCCCccce--------EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF--------TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      +++.+.++.|.+|++.+..        ..+.        .+..+ ..+..+++++++ +++++...++.|.+||.. ++.
T Consensus       197 ~v~~~~~~~i~~~d~~~~g--------~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~~  265 (333)
T 2dg1_A          197 WVTETTANRLHRIALEDDG--------VTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYP  265 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTS--------SSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCE
T ss_pred             EEEeCCCCeEEEEEecCCC--------cCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CCE
Confidence            5666678899999986421        1111        11122 467889999988 777777778899999984 442


Q ss_pred             eEEEEecCCC------CcEEEEEEcCCCCcEEEEEeC
Q 010748          440 SCIASRNPKA------GAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       440 ~~~~~~~~~~------~~v~~~~~spd~~~ll~sg~~  470 (502)
                        +..+..+.      ..+.+++|+|++..+++++..
T Consensus       266 --~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          266 --IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             --EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             --EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence              23332222      268899999998755544443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.66  E-value=8.7e-14  Score=135.40  Aligned_cols=263  Identities=14%  Similarity=0.134  Sum_probs=170.1

Q ss_pred             cccccCCCceEEEEEec------CCcceeEEEEEecCCCCCCCeeeeecccc-------CCCcceeeeecCCCCCCCCCC
Q 010748          144 DMTINPNDAVIVCARNE------DDVSHLEVYILEESDGGDPNLYVHHHIII-------PAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~------~~~~~l~v~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~  210 (502)
                      .+.|+|++++|.++...      ++ ..-.|.+|+....   .+  .....+       ...|..+.+       +|+|+
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~-~~~~v~v~d~~t~---~~--~~~i~~~~~~~~~g~~p~~i~~-------spdg~  120 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGK-RSDVVEVWDADKL---TF--EKEISLPPKRVQGLNYDGLFRQ-------TTDGK  120 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSC-EEEEEEEEETTTC---CE--EEEEEECTTBCCBCCCGGGEEE-------CTTSS
T ss_pred             ceEECCCCCEEEEEEecccccccCC-CCCEEEEEECcCC---cE--EEEEEcCccccccCCCcceEEE-------CCCCC
Confidence            78999999999988641      00 0114555555432   21  122222       134455544       89999


Q ss_pred             EEEEecC--CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          211 FMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       211 ~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +|+++..  ++.|.+||+.+...+...                          . .+ .....+.+.|.+...+++.+.|
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~--------------------------i-~~-~~~~~v~~~p~~~~~~~~~~~d  172 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYVEDV--------------------------T-AA-AGCWSVIPQPNRPRSFMTICGD  172 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEEEEE--------------------------G-GG-TTEEEEEECTTSSSEEEEEETT
T ss_pred             EEEEECCCCCCeEEEEECCCCcEEEEE--------------------------e-cC-CCcceeEEcCCCCeeEEEECCC
Confidence            9999874  579999999864221110                          0 01 1122355777766788899999


Q ss_pred             CcEEEEeCCC-CeeeE------eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-Ee----------
Q 010748          289 KQVKIWDVAA-GKCNL------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WA----------  350 (502)
Q Consensus       289 g~v~vwd~~~-~~~~~------~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~----------  350 (502)
                      |.+.+|++.. ++...      .+..+..++ .+.+++++ ..++..+.++.|.++|+......... +.          
T Consensus       173 g~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~  250 (361)
T 2oiz_A          173 GGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN  250 (361)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred             CcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence            9999999865 55441      222222222 23345666 55666778999999999765432111 11          


Q ss_pred             -ecCCeeEEEeCCCCCCEEEEEe----------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          351 -VAADVESLAWDPHAEHSFVVSL----------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       351 -~~~~v~~v~~~~~~~~~~~~~~----------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                       .......++|+|++..++++..          ..+.|.+||+.+.         +.+.++..+.  +.+++|+|++ ++
T Consensus       251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~spdg-~~  318 (361)
T 2oiz_A          251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQQR-NL  318 (361)
T ss_dssp             CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEETTT-TE
T ss_pred             cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECCCC-CE
Confidence             0122223789998775444443          1347999999986         7778888777  9999999998 68


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC
Q 010748          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                      |++++. +.|.+||+.++++..+..+..+......++++|+|.
T Consensus       319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            887776 999999999984336666656667788999999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=5.5e-14  Score=130.68  Aligned_cols=235  Identities=11%  Similarity=0.061  Sum_probs=161.4

Q ss_pred             CCCCCEEE-EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REKGNFMA-VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la-~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +++|++++ +.+.++.|.+|+.......                           .....+...+.+|++.+++ .++++
T Consensus        32 ~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~~~p~~i~~~~~g-~l~v~   83 (270)
T 1rwi_B           32 DSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------VLPFNGLYQPQGLAVDGAG-TVYVT   83 (270)
T ss_dssp             CTTCCEEEEECSSSCEEEEECC-----E---------------------------ECCCCSCCSCCCEEECTTC-CEEEE
T ss_pred             CCCCCEEEEccCCCCcEEEecCCCcccc---------------------------eEeeCCcCCcceeEECCCC-CEEEE
Confidence            78888777 5577899999987532110                           0011233567889999984 45555


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  364 (502)
                      .. ++.|.+||................+.++++.+++ +++++...++.|.+|+..+.............+..+++++++
T Consensus        84 ~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  161 (270)
T 1rwi_B           84 DF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG  161 (270)
T ss_dssp             ET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred             cC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence            55 8899999987654432222233678999999988 777777778899999765543322111223457889999977


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . ++++...++.|.+|+....         ........+...+.++++++++ .++++...++.|.+|+......  ...
T Consensus       162 ~-l~v~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~--~~~  228 (270)
T 1rwi_B          162 N-VYVTDTDNNRVVKLEAESN---------NQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS--TVL  228 (270)
T ss_dssp             C-EEEEEGGGTEEEEECTTTC---------CEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC--EEC
T ss_pred             C-EEEEECCCCEEEEEecCCC---------ceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc--eee
Confidence            5 6666667889999998764         2111122233668899999988 8888877788999999876542  222


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      ...+...+.+++++++|. ++++...++.|++|++...+.
T Consensus       229 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          229 PFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGGS
T ss_pred             ccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCccc
Confidence            223335689999999997 788888899999999876554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=3.8e-14  Score=150.45  Aligned_cols=284  Identities=9%  Similarity=-0.012  Sum_probs=179.0

Q ss_pred             cCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCC---CcceeeeecCCCCCCCCCCEEE-----EecCCC
Q 010748          148 NPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFMA-----VGSMEP  219 (502)
Q Consensus       148 ~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~la-----~g~~dg  219 (502)
                      +|+|..++....++....-.+|..+...+.. ............   ....+.       |||+|++||     .|+.+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~d~~~~a~~~~~~~~~~~-------~SPDG~~la~~~~~~G~~~~  147 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQE-KVLLDPNGWSKDGTVSLGTWA-------VSWDGKKVAFAQKPNAADEA  147 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCC-EEEECGGGSSSSSCEEEEEEE-------ECTTSSEEEEEEEETTCSCC
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCc-EEEEchHHhccCCCEEEEEEE-------ECCCCCEEEEEECCCCCceE
Confidence            4889998888876643455788877543311 111111110000   012333       389999999     444557


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc--eeeEEeccCCCcEEEEEecCCc-------
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS--VLGLAWNKEFRNILASASADKQ-------  290 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~~l~sgs~dg~-------  290 (502)
                      .|++||+.++..+..                             .+...  ...++|+|++ ..|+.++.+..       
T Consensus       148 ~i~v~dl~tg~~~~~-----------------------------~~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          148 VLHVIDVDSGEWSKV-----------------------------DVIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             EEEEEETTTCCBCSS-----------------------------CCBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGG
T ss_pred             EEEEEECCCCCCcCC-----------------------------cccCcccccceEEecCC-CEEEEEEecCCCCCcccc
Confidence            899999987543210                             01111  2678999995 57778887766       


Q ss_pred             ------EEEEeCCCCe----eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEecCCCCCccceEeecCCee
Q 010748          291 ------VKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       291 ------v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~v~  356 (502)
                            |++|++.+++    ++.....|...+.++.|+|+| ++|+.++.++    .|.+|+..+... .........+.
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~  275 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKY  275 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceE
Confidence                  9999998876    333444566788999999999 6666555544    566666544433 22344455566


Q ss_pred             EEEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccceEEecc--CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748          357 SLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      ...| +++. +++.+.   .++.|.+||+.++..       .....+..|  ...+..++|+ .+ .++++...++..+|
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR-------ASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEV  344 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG-------GGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEE
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc-------cCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEE
Confidence            6667 5566 555554   357899999876510       112344433  4457888888 34 78889999998888


Q ss_pred             EECC-CCCeeEEEEecCC-CCcEEEEEEcCCCCcEEEEEeC---CCcEEEEECCCCcc
Q 010748          432 WDLS-NNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGS---KGKLEIWDTLSDAG  484 (502)
Q Consensus       432 wd~~-~~~~~~~~~~~~~-~~~v~~~~~spd~~~ll~sg~~---dg~i~vwd~~~~~~  484 (502)
                      |.+. .++  ....+..+ .+.+..++++|++..++++.++   .+.|++||+.+++.
T Consensus       345 ~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          345 RVATLKGK--PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEETTCC--EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEeCCCC--eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7654 233  23344443 6678889999999755544433   36799999988763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.65  E-value=1e-13  Score=134.00  Aligned_cols=264  Identities=12%  Similarity=0.093  Sum_probs=165.2

Q ss_pred             cccccccccCCCceEEEEEecC----CcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          140 EDLEDMTINPNDAVIVCARNED----DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~----~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..+..+.+  +|+.|+......    +...-.||+++...+   .....      ....+..|       ||+|++||.+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~l------~~~~~~~~-------SpDg~~la~~   76 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN---ARRFI------ENATMPRI-------SPDGKKIAFM   76 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC---CEEEE------ESCEEEEE-------CTTSSEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC---ceEEc------ccCCCeEE-------CCCCCEEEEE
Confidence            45667777  888887764321    112347888876654   21111      22244555       8999999987


Q ss_pred             cCC---C--cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec---
Q 010748          216 SME---P--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA---  287 (502)
Q Consensus       216 ~~d---g--~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~---  287 (502)
                      +.+   +  .|.+|++.++...                            .+..+.. +.+++|+|++. .|+.++.   
T Consensus        77 ~~~~~~~~~~l~~~~~~~g~~~----------------------------~l~~~~~-~~~~~wspdg~-~l~~~~~~~~  126 (347)
T 2gop_A           77 RANEEKKVSEIWVADLETLSSK----------------------------KILEAKN-IRSLEWNEDSR-KLLIVGFKRR  126 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEE----------------------------EEEEESE-EEEEEECTTSS-EEEEEEECCC
T ss_pred             EeccCCCcceEEEEECCCCceE----------------------------EEEcCCC-ccceeECCCCC-EEEEEEccCC
Confidence            654   3  3777777642211                            0111223 89999999954 5666553   


Q ss_pred             ------------------------CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC-------cEEE
Q 010748          288 ------------------------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------SVVM  336 (502)
Q Consensus       288 ------------------------dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-------~i~i  336 (502)
                                              ...|.+||+.+++.+..+.. . .+..+.|+|++  +++++..++       ...+
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l  202 (347)
T 2gop_A          127 EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDI  202 (347)
T ss_dssp             C---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEE
T ss_pred             CcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccE
Confidence                                    25799999998887455554 3 78899999998  666666542       4455


Q ss_pred             EecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC-------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeE
Q 010748          337 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED-------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       337 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d-------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                      |.+.++. ....... ..+..  ++|++..+++++...       ..|.+||  ++         ........|...+..
T Consensus       203 ~~~d~~~-~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---------~~~~l~~~~~~~~~~  267 (347)
T 2gop_A          203 YIWEDGK-EEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---------EVMGILDEVDRGVGQ  267 (347)
T ss_dssp             EEEETTE-EEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---------CEEESSTTCCSEEEE
T ss_pred             EEeCCCc-eEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CC---------ceEeccccCCcccCC
Confidence            5444333 2222333 44444  388887555554332       4688888  32         222223345677876


Q ss_pred             -EEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcE-EEEECC
Q 010748          410 -ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL-EIWDTL  480 (502)
Q Consensus       410 -l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i-~vwd~~  480 (502)
                       +.|+ ++  ++++++.++.++|| +.+++.   ..+..+.+.|.+++|+|  . ++++++.++.. .||.+.
T Consensus       268 ~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~---~~~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          268 AKIKD-GK--VYFTLFEEGSVNLY-IWDGEI---KPIAKGRHWIMGFDVDE--I-VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEET-TE--EEEEEEETTEEEEE-EESSSE---EEEECSSSEEEEEEESS--S-EEEEEECSSSCCEEEEES
T ss_pred             ccEEc-Cc--EEEEEecCCcEEEE-EcCCce---EEEecCCCeEEeeeeeC--c-EEEEEcCCCChHHheEeC
Confidence             8998 64  88889999999999 875543   22333467899999999  4 56667776654 777776

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=2.9e-14  Score=137.02  Aligned_cols=257  Identities=10%  Similarity=0.104  Sum_probs=172.2

Q ss_pred             cccccccccCCCceEEEEEecCCcc-------------------eeEEEEEecCCCCCCCeeeeeccccCCCcceeeeec
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVS-------------------HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLD  200 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~-------------------~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  200 (502)
                      ..+..++++|+|+++++.+.+....                   .-.|++++...+   .+...-....-..|..+++  
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~--   98 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSI--   98 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEE--
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEE--
Confidence            4688999999999998877653110                   014777776544   3322111111123455554  


Q ss_pred             CCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748          201 CPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       201 ~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                           +++|+++++.+.++.|++|+.+....  ....++...               ..-.-.++-....+|+++|+++.
T Consensus        99 -----d~~g~l~v~d~~~~~v~~~~~~g~~~--~~~~~~~~~---------------~~g~~~~~~~~P~~ia~~~~~g~  156 (329)
T 3fvz_A           99 -----DTDGNYWVTDVALHQVFKLDPHSKEG--PLLILGRSM---------------QPGSDQNHFCQPTDVAVEPSTGA  156 (329)
T ss_dssp             -----CTTSCEEEEETTTTEEEEECTTCSSC--CSEEESBTT---------------BCCCSTTCCSSEEEEEECTTTCC
T ss_pred             -----CCCCCEEEEECCCCEEEEEeCCCCeE--EEEEecccC---------------CCCCCccccCCCcEEEEeCCCCe
Confidence                 78999999999899999999864210  111111100               00001235567899999994366


Q ss_pred             EEEEEe-cCCcEEEEeCCCCeeeEeeccCC----------CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748          281 ILASAS-ADKQVKIWDVAAGKCNLTLEHHT----------DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       281 ~l~sgs-~dg~v~vwd~~~~~~~~~~~~h~----------~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (502)
                      ++++.+ .++.|++|+ .+++.+..+....          .....|+++|++..++++...++.|++|+..+++......
T Consensus       157 lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          157 VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            777776 689999999 5677777764322          3489999999844888888899999999998665443221


Q ss_pred             --eecCCeeEEEeCCCCCCEEEEE-------eCCCcEEEEECCCCCCCCCCCCCccceEE---eccCCCeeEEEEcCCCC
Q 010748          350 --AVAADVESLAWDPHAEHSFVVS-------LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVP  417 (502)
Q Consensus       350 --~~~~~v~~v~~~~~~~~~~~~~-------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~  417 (502)
                        .+...+..++|+| + ..+.+.       ..+..|++|+..++         ..+..+   ..+...+.+|+++|++ 
T Consensus       236 ~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g---------~~~~~~~~~~~~~~~p~~ia~~~dG-  303 (329)
T 3fvz_A          236 HASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSG---------EIIDVFKPVRKHFDMPHDIVASEDG-  303 (329)
T ss_dssp             CTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTC---------CEEEEECCSSSCCSSEEEEEECTTS-
T ss_pred             ccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCC---------eEEEEEcCCCCccCCeeEEEECCCC-
Confidence              2345688899998 2 222222       23458999999876         555555   3566778999999998 


Q ss_pred             CEEEEEeCCCcEEEEECCC
Q 010748          418 NLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~  436 (502)
                      .++++...++.|++|++..
T Consensus       304 ~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          304 TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEESSSCCEEEEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCc
Confidence            8999999999999999754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.63  E-value=6.3e-15  Score=145.01  Aligned_cols=234  Identities=9%  Similarity=0.017  Sum_probs=150.6

Q ss_pred             CCCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748          203 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       203 ~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      +.|+|+|++||.....   ..|.+|++.++....                           ...++......+.|+|+ +
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~---------------------------l~~~~~~~~~~~~~spd-g   92 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ---------------------------LTEGKGDNTFGGFISTD-E   92 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE---------------------------CCCSSCBCTTTCEECTT-S
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE---------------------------eecCCCCccccceECCC-C
Confidence            4458999998877543   367788876532110                           11122223334789999 4


Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEE-------------------EEEcCCCCcEEEEE-----eCCCcEE
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA-------------------VAWNHHSPQILLSG-----SFDRSVV  335 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~~~~l~s~-----s~dg~i~  335 (502)
                      ..|+.++.++.|++||+.+++....+..+......                   +.|+|++ ..++.+     ..+..|.
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~  171 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLI  171 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEE
Confidence            58888888889999999988766555544443222                   3466776 444332     4567899


Q ss_pred             EEecCCCCCccceEeecCCeeEEEeCC-CCCCEEEEEeCC------CcEEEEECCCCCCCCCCCCCccceEEecc--CCC
Q 010748          336 MKDARISTHSGFKWAVAADVESLAWDP-HAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKA  406 (502)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~  406 (502)
                      +||+.++.... .......+..+.|+| ++.. ++..+.+      ..|.+|++...          ....+..+  ...
T Consensus       172 ~~d~~~g~~~~-~~~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~----------~~~~l~~~~~~~~  239 (396)
T 3c5m_A          172 KVDIETGELEV-IHQDTAWLGHPIYRPFDDST-VGFCHEGPHDLVDARMWLVNEDGS----------NVRKIKEHAEGES  239 (396)
T ss_dssp             EEETTTCCEEE-EEEESSCEEEEEEETTEEEE-EEEEECSCSSSCSCCCEEEETTSC----------CCEESSCCCTTEE
T ss_pred             EEECCCCcEEe-eccCCcccccceECCCCCCE-EEEEecCCCCCCCceEEEEECCCC----------ceeEeeccCCCcc
Confidence            99998866543 345667789999999 5653 4443333      36888888654          12222222  235


Q ss_pred             eeEEEEcCCCCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcC-CCCcEEEEEe-----------
Q 010748          407 VCTISYNPLVPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE-DSPFVLAIGG-----------  469 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~ll~sg~-----------  469 (502)
                      +..++|+|++ ..|+.++.+     +.|++||+.+++...+.....    .. +.|+| ++++ |++++           
T Consensus       240 ~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~-l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          240 CTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSL-MVGDGCDAPVDVADAD  312 (396)
T ss_dssp             EEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSE-EEEEECCC--------
T ss_pred             ccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCce-EEEecCCcceeecccc
Confidence            7889999998 555554433     449999999887544443332    23 89999 9994 65543           


Q ss_pred             -----CCCcEEEEECCCCcc
Q 010748          470 -----SKGKLEIWDTLSDAG  484 (502)
Q Consensus       470 -----~dg~i~vwd~~~~~~  484 (502)
                           .++.|++||+.++..
T Consensus       313 ~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             --CCCCCCEEEEEETTTTBC
T ss_pred             ccccCCCCcEEEEecccCce
Confidence                 346899999987764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=2.5e-12  Score=121.01  Aligned_cols=281  Identities=10%  Similarity=0.082  Sum_probs=183.6

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d  218 (502)
                      ...+.++.+.|+|+++++....+     .|+.++.. .   .+...........|.++.+       +++|+++++...+
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~-----~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~-------~~~g~l~v~~~~~   77 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKAN-----MISCINLD-G---KITEYPLPTPDAKVMCLTI-------SSDGEVWFTENAA   77 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTT-----EEEEECTT-C---CEEEEECSSTTCCEEEEEE-------CTTSCEEEEETTT
T ss_pred             CCCccceEECCCCCEEEEecCCC-----cEEEEcCC-C---CeEEecCCcccCceeeEEE-------CCCCCEEEeCCCC
Confidence            35688999999999887765444     67777655 3   2222111111234455544       6789888887778


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~  298 (502)
                      +.|..|+... . ...                         .....+...+.++++.++ +.++++...++.|.+||. +
T Consensus        78 ~~i~~~~~~g-~-~~~-------------------------~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           78 NKIGRITKKG-I-IKE-------------------------YTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             TEEEEECTTS-C-EEE-------------------------EECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-T
T ss_pred             CeEEEECCCC-c-EEE-------------------------EeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-C
Confidence            8899998751 1 100                         001123456889999998 457777667889999998 5


Q ss_pred             CeeeEe-eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          299 GKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       299 ~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      ++.... +..+...+.++++.+++ .++++...++.|..||. ++....... .....+..+++++++. ++++....+.
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~  205 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNK  205 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCce
Confidence            544332 23345678999999998 77777767789999998 444322111 1234578999999764 5666556789


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      |.+|+. ++.        ........+...+.++++++++ .++++...++.|.+||. ++.. .......+...+.+++
T Consensus       206 i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~  273 (299)
T 2z2n_A          206 IGRITT-SGE--------ITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGIC  273 (299)
T ss_dssp             EEEECT-TCC--------EEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEE
T ss_pred             EEEECC-CCc--------EEEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEE
Confidence            999998 541        1122233455678999999987 66666667789999998 3432 2333344556799999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      + +++. ++++ +..+.|..++..++
T Consensus       274 ~-~~g~-l~v~-~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          274 F-DGET-IWFA-MECDKIGKLTLIKD  296 (299)
T ss_dssp             E-CSSC-EEEE-ETTTEEEEEEEC--
T ss_pred             e-cCCC-EEEE-ecCCcEEEEEcCcc
Confidence            9 8887 4554 34677888887654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.60  E-value=6.8e-13  Score=124.50  Aligned_cols=242  Identities=12%  Similarity=0.126  Sum_probs=160.9

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeecc----ccCCCcceeeeecCCCCCCCCCCEEE
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI----IIPAFPLCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~la  213 (502)
                      +-....+++++|+++++++...++     .|+.|+....   .+......    .....|.++++.      .+++++++
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~-----~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~------~~~g~l~v   93 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNH-----RIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVV------RNSGDIIV   93 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGT-----EEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEE------TTTTEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCC-----EEEEECCCCc---EEEEecccCCCcccccCceEEEEE------cCCCeEEE
Confidence            345678899999999888877665     6777765432   22111100    001234455442      35677777


Q ss_pred             EecC-CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEE
Q 010748          214 VGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       214 ~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~  292 (502)
                      +... ++.|++|+.+ +..+..                          ....+...+.++++.+++ +++++...++.|.
T Consensus        94 ~~~~~~~~i~~~d~~-g~~~~~--------------------------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~  145 (286)
T 1q7f_A           94 TERSPTHQIQIYNQY-GQFVRK--------------------------FGATILQHPRGVTVDNKG-RIIVVECKVMRVI  145 (286)
T ss_dssp             EECGGGCEEEEECTT-SCEEEE--------------------------ECTTTCSCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred             EcCCCCCEEEEECCC-CcEEEE--------------------------ecCccCCCceEEEEeCCC-CEEEEECCCCEEE
Confidence            6643 7899999943 221110                          011244568899999984 5777777889999


Q ss_pred             EEeCCCCeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec---CCeeEEEeCCCCCCE
Q 010748          293 IWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA---ADVESLAWDPHAEHS  367 (502)
Q Consensus       293 vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~v~~v~~~~~~~~~  367 (502)
                      +|+.. ++.+..+.  .+...+.++++++++ +++++.+.++.|++|+.... ... .....   ..+..+++++++ ++
T Consensus       146 ~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~-~~~~~g~~~~p~~i~~d~~G-~l  220 (286)
T 1q7f_A          146 IFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YLR-QIGGEGITNYPIGVGINSNG-EI  220 (286)
T ss_dssp             EECTT-SCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EEE-EESCTTTSCSEEEEEECTTC-CE
T ss_pred             EEcCC-CCEEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EEE-EEccCCccCCCcEEEECCCC-CE
Confidence            99964 56666653  345678999999998 77777778999999997542 221 22222   468899999986 46


Q ss_pred             EEEEeCCC-cEEEEECCCCCCCCCCCCCccceEEeccC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          368 FVVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       368 ~~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +++...++ .|.+|+...          ..+..+..+.  ..+.+++++|++ +++++ +.++.|++|++....
T Consensus       221 ~v~~~~~~~~i~~~~~~g----------~~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          221 LIADNHNNFNLTIFTQDG----------QLISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEECSSSCEEEEECTTS----------CEEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCC
T ss_pred             EEEeCCCCEEEEEECCCC----------CEEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEccccc
Confidence            77776675 999999542          4445555443  347799999987 66666 579999999986644

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.60  E-value=4.9e-13  Score=137.03  Aligned_cols=311  Identities=10%  Similarity=0.039  Sum_probs=198.0

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCC----CCCCEEEEec
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR----EKGNFMAVGS  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~la~g~  216 (502)
                      ....+.|+|++++|.+++.++     .|++++....   .......+.....|..+++       +    |+|+++++++
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg-----~V~viD~~~~---t~~~v~~i~~G~~P~~ia~-------s~~~~pDGk~l~v~n  262 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDG-----KVNMIDLWMK---EPTTVAEIKIGSEARSIET-------SKMEGWEDKYAIAGA  262 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTS-----EEEEEETTSS---SCCEEEEEECCSEEEEEEE-------CCSTTCTTTEEEEEE
T ss_pred             CccceEECCCCCEEEEEcCCC-----eEEEEECCCC---CCcEeEEEecCCCCceeEE-------ccccCCCCCEEEEEE
Confidence            345789999999999887654     6777776311   1122233444455555555       6    6999988877


Q ss_pred             CC-CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc-ceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          217 ME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       217 ~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      .. +.|.|+|..+.+.+....+.+.                 .......|.. .+..+..++++..++++....|.|.++
T Consensus       263 ~~~~~v~ViD~~t~~~~~~i~~~~~-----------------~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v  325 (567)
T 1qks_A          263 YWPPQYVIMDGETLEPKKIQSTRGM-----------------TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  325 (567)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEE-----------------CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             ccCCeEEEEECCCCcEEEEEecccc-----------------ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence            54 8999999877554432221110                 0000011333 677888888877677777778999999


Q ss_pred             eCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee-c---CCeeEEE-eCCCCCCE
Q 010748          295 DVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-A---ADVESLA-WDPHAEHS  367 (502)
Q Consensus       295 d~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~---~~v~~v~-~~~~~~~~  367 (502)
                      |....+.  +..+ ........+.|+|++..++++...++.|.++|+.+.+..... .. .   .+-..+. ++|++..+
T Consensus       326 d~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-~vgg~~Phpg~g~~~~~p~~g~v  403 (567)
T 1qks_A          326 DYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-DTGGQTPHPGRGANFVHPTFGPV  403 (567)
T ss_dssp             ETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-ECSSSSBCCTTCEEEEETTTEEE
T ss_pred             ecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-eccCcCCCCccceeeECCCCCcE
Confidence            9876543  2223 234567789999999444455557899999999987654322 22 1   1111222 57765545


Q ss_pred             EEEEe-CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-------CCcEEEEECCCC--
Q 010748          368 FVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-------DKMVKLWDLSNN--  437 (502)
Q Consensus       368 ~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-------dg~i~vwd~~~~--  437 (502)
                      ++++. .++.|.++|..+.....  ...+.+.++......-..+.++|++ .+|.+...       .++|.|||+.+.  
T Consensus       404 ~~t~~~g~~~Vsvid~~~~~~~~--~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  480 (567)
T 1qks_A          404 WATSHMGDDSVALIGTDPEGHPD--NAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTG  480 (567)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTT--TBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCC
T ss_pred             EEeCCCCCCeEEEecCCCCCCcc--ccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccc
Confidence            55554 56899999998732110  0024566666554444567899998 56666542       358999999876  


Q ss_pred             ---CeeEEEEec--------CCCCcEEEEEEcCCCCcEEEEEe----CCCcEEEEECCCCccccccc
Q 010748          438 ---QPSCIASRN--------PKAGAVFSVAFSEDSPFVLAIGG----SKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       438 ---~~~~~~~~~--------~~~~~v~~~~~spd~~~ll~sg~----~dg~i~vwd~~~~~~~~~~~  489 (502)
                         .. ....+.        .....+..+.|+|+|.+++++..    .++.|.|+|..+.+.+.++-
T Consensus       481 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          481 DGSDP-EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             SSSCC-CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             cccCC-CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence               21 111221        12357899999999998777644    37899999999998776554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=4.9e-13  Score=126.25  Aligned_cols=227  Identities=10%  Similarity=0.055  Sum_probs=153.9

Q ss_pred             CCCCC-EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|+|+ +++++..++.|.+|+..+.  ..                           .+..+...+.++++++++ .++++
T Consensus        36 d~~g~~l~~~~~~~~~i~~~~~~~~--~~---------------------------~~~~~~~~~~~l~~~~dg-~l~v~   85 (296)
T 3e5z_A           36 VPARSAVIFSDVRQNRTWAWSDDGQ--LS---------------------------PEMHPSHHQNGHCLNKQG-HLIAC   85 (296)
T ss_dssp             EGGGTEEEEEEGGGTEEEEEETTSC--EE---------------------------EEESSCSSEEEEEECTTC-CEEEE
T ss_pred             eCCCCEEEEEeCCCCEEEEEECCCC--eE---------------------------EEECCCCCcceeeECCCC-cEEEE
Confidence            68888 7888888999999998753  11                           122355678999999984 57777


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccC----CCCeEEEEEcCCCCcEEEEEeC-----------------CCcEEEEecCCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSGSF-----------------DRSVVMKDARIST  343 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~s~-----------------dg~i~iwd~~~~~  343 (502)
                      ...++.|.+||..+++........    ...+..++++|+| +++++.+.                 .+.|..++..  .
T Consensus        86 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g  162 (296)
T 3e5z_A           86 SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G  162 (296)
T ss_dssp             ETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S
T ss_pred             ecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC--C
Confidence            666789999999888754433221    2356789999999 77776321                 2355555544  2


Q ss_pred             CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCcc---ceEEeccCCCeeEEEEcCCCCCEE
Q 010748          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ..............++|+|++.. +++.+.++.|.+|++...        ...   ...+..+...+.+++++++| +++
T Consensus       163 ~~~~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~--------g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~  232 (296)
T 3e5z_A          163 TLSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNAR--------GETEYQGVHFTVEPGKTDGLRVDAGG-LIW  232 (296)
T ss_dssp             CEEEEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSS--------SCEEEEEEEECCSSSCCCSEEEBTTS-CEE
T ss_pred             CEEEeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCC--------CcCcCCCeEeeCCCCCCCeEEECCCC-CEE
Confidence            22223344556789999998874 577788899999998732        121   12223355667899999998 666


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEE-cCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      ++.  ++.|.+|+.. ++  .+..+..+.. +.+++| .|++.. |.+++.+ .+.-++..+..
T Consensus       233 v~~--~~~v~~~~~~-g~--~~~~~~~~~~-~~~~~f~~~d~~~-L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          233 ASA--GDGVHVLTPD-GD--ELGRVLTPQT-TSNLCFGGPEGRT-LYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             EEE--TTEEEEECTT-SC--EEEEEECSSC-CCEEEEESTTSCE-EEEEETT-EEEEEECSCCB
T ss_pred             EEc--CCeEEEECCC-CC--EEEEEECCCC-ceeEEEECCCCCE-EEEEcCC-eEEEEEccccc
Confidence            555  7889999986 44  3444555555 889999 688885 5555554 45566665544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.58  E-value=5.1e-14  Score=148.65  Aligned_cols=249  Identities=10%  Similarity=-0.031  Sum_probs=150.6

Q ss_pred             ccccc--CCCce-EEEEEecCCcceeEEEEEecC--C-CCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          144 DMTIN--PNDAV-IVCARNEDDVSHLEVYILEES--D-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       144 ~~~~~--p~~~~-l~~~~~~~~~~~l~v~~~~~~--~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      .+.|+  |+|+. |+.+...    ..+||.++..  . .....+..............++|       +|+|++|++++.
T Consensus        81 ~~~~~~SPDg~~~la~~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~-------spDg~~l~~~~~  149 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFG----DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL-------LPERGEVWCMAE  149 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTT----TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE-------ETTTTEEEEEEE
T ss_pred             cceeeeecCCCeEEEEEECC----CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE-------CCCCCEEEEEEe
Confidence            44454  99999 7766533    2478888865  2 21111111100000111234455       899999999887


Q ss_pred             C----------CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCccccccccc-CcccceeeEEeccCCCcEEEEEe
Q 010748          218 E----------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       218 d----------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +          ..|++|++.+.....                      ......+. .+...+..++|+|+| .+|+.++
T Consensus       150 ~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~  206 (662)
T 3azo_A          150 EFTGEGPSDVRRFLAAVPLDGSAAAD----------------------RSAVRELSDDAHRFVTGPRLSPDG-RQAVWLA  206 (662)
T ss_dssp             EECSSSTTCEEEEEEEEETTSTTTTC----------------------GGGSEESSCSCSSEECCCEECTTS-SEEEEEE
T ss_pred             cccCCCCCCceeEEEEEECCCCcccc----------------------CCceeEEEecCCCcccCceECCCC-CEEEEEE
Confidence            6          589999987510000                      00001122 345678889999995 4777766


Q ss_pred             cC--------CcEEEEeCC-CC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCccceEeec
Q 010748          287 AD--------KQVKIWDVA-AG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       287 ~d--------g~v~vwd~~-~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~  352 (502)
                      .+        ..|++||+. ++   +......+|...+..+.|+|+| ++++++..++  .|.+|++.++........+.
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeecccccc
Confidence            55        379999998 57   4444445567889999999999 5888888888  56666664544322111111


Q ss_pred             C--------CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE-EEcCCCCCEEE-E
Q 010748          353 A--------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-SYNPLVPNLLA-T  422 (502)
Q Consensus       353 ~--------~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~sp~~~~~l~-t  422 (502)
                      .        .+.+++|+|++. ++++++. +.+++|.+...        ...+..+..|...+..+ ++++  ..+++ +
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~--------~~~~~~l~~~~~~~~~~~s~~~--~~~~~~~  353 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPE--------SGELVDAAGPWTEWAATLTVSG--TRAVGVA  353 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETT--------TTEEEECCSSCCEEEEEEEEET--TEEEEEE
T ss_pred             cccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEECC--------CCcEEEecCCCCeEEEEEecCC--CEEEEEE
Confidence            1        146788888654 7888888 99999944322        12356667777777777 5544  34444 4


Q ss_pred             EeCCC--cEEEEECCCCCe
Q 010748          423 GSTDK--MVKLWDLSNNQP  439 (502)
Q Consensus       423 ~s~dg--~i~vwd~~~~~~  439 (502)
                      ++.+.  .|.+||+.+++.
T Consensus       354 ~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          354 ASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EETTEEEEEEEEETTTCCE
T ss_pred             cCCCCCCEEEEEECCCCce
Confidence            44444  466667777764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=2.8e-12  Score=121.85  Aligned_cols=248  Identities=10%  Similarity=0.080  Sum_probs=161.8

Q ss_pred             cceeeeecCCCCCCCCCCEEEE-------ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc
Q 010748          193 PLCMAWLDCPLKDREKGNFMAV-------GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH  265 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~-------g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h  265 (502)
                      |.+++|       +++++++++       ++.++.|.+|+..++.... ..                      .....++
T Consensus        20 ~~~~~~-------~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~----------------------~~~~~~~   69 (314)
T 1pjx_A           20 AEGPVF-------DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-IC----------------------KPEVNGY   69 (314)
T ss_dssp             CEEEEE-------CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EE----------------------CCEETTE
T ss_pred             ccCceE-------CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EE----------------------ecccCCC
Confidence            456666       678888888       6778999999976532210 00                      0001134


Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEe-ecc----CCCCeEEEEEcCCCCcEEEEEeCC---------
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT-LEH----HTDKVQAVAWNHHSPQILLSGSFD---------  331 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~~l~s~s~d---------  331 (502)
                      ...+.+++++++++.+++ ++..+.|.+||.. ++.... ...    ....+.++++.+++ +++++...+         
T Consensus        70 ~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           70 GGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             ECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCB
T ss_pred             CCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccc
Confidence            567899999998333444 4444579999988 765433 221    12358899999998 777666554         


Q ss_pred             ------CcEEEEecCCCCCccceEeecCCeeEEEeC----CCCCCEEEEEeCCCcEEEEECC-CCCCCCCCCCCccceEE
Q 010748          332 ------RSVVMKDARISTHSGFKWAVAADVESLAWD----PHAEHSFVVSLEDGTIKGFDIR-TAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       332 ------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~----~~~~~~~~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~  400 (502)
                            +.|..|+.. ++ .............++|+    |++..++++...++.|.+|++. .+....    ......+
T Consensus       147 ~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~----~~~~~~~  220 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN----KKVWGHI  220 (314)
T ss_dssp             TTSSSCEEEEEECTT-SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE----EEEEEEC
T ss_pred             cccCCCCeEEEECCC-CC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc----ceEEEEC
Confidence                  567777665 32 22233344567889999    9775455555678899999976 221000    0122223


Q ss_pred             eccC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          401 HAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       401 ~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      ..+. ..+..+++++++ +++++...++.|.+||..+++...  .+..+...+.+++|+|++.+++++...++.|..|++
T Consensus       221 ~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          221 PGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKM--RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSE--EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeE--EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            3333 567889999988 888887788899999998665322  333445679999999999866666666789999998


Q ss_pred             CCC
Q 010748          480 LSD  482 (502)
Q Consensus       480 ~~~  482 (502)
                      ...
T Consensus       298 ~~~  300 (314)
T 1pjx_A          298 QRN  300 (314)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=4.6e-12  Score=129.84  Aligned_cols=279  Identities=12%  Similarity=0.070  Sum_probs=182.5

Q ss_pred             CCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCC-
Q 010748          149 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD-  227 (502)
Q Consensus       149 p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~-  227 (502)
                      |.+.++++...++     .|++++....   .+.  ..+.+...|.++.+       +|+|++|++++.++.|.+||+. 
T Consensus       165 ~~~~~~V~~~~~~-----~V~viD~~t~---~v~--~~i~~g~~p~~v~~-------SpDGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          165 LENLFSVTLRDAG-----QIALIDGSTY---EIK--TVLDTGYAVHISRL-------SASGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             GGGEEEEEETTTT-----EEEEEETTTC---CEE--EEEECSSCEEEEEE-------CTTSCEEEEEETTSEEEEEETTS
T ss_pred             CCceEEEEeCCCC-----eEEEEECCCC---eEE--EEEeCCCCccceEE-------CCCCCEEEEEcCCCeEEEEECCC
Confidence            4344444444444     7777876654   222  22233334444443       8999999999999999999985 


Q ss_pred             -CCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec----cCCCcEEEEEecCCcEEEEeCCCCeee
Q 010748          228 -VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN----KEFRNILASASADKQVKIWDVAAGKCN  302 (502)
Q Consensus       228 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~----~~~~~~l~sgs~dg~v~vwd~~~~~~~  302 (502)
                       +...+.                           .... ......++|+    |+++.++++...+++|.|+|..+.+.+
T Consensus       228 ~t~~~v~---------------------------~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          228 KEPTTVA---------------------------EIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  279 (567)
T ss_dssp             SSCCEEE---------------------------EEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             CCCcEeE---------------------------EEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence             322111                           1111 1235789999    686655666667799999999999888


Q ss_pred             Eeecc----------CCC-CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCCCCEEEE
Q 010748          303 LTLEH----------HTD-KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       303 ~~~~~----------h~~-~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~  370 (502)
                      .++..          |.. .+..+..++.++.++++....|.|.++|........ ...........+.|+|++..++++
T Consensus       280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va  359 (567)
T 1qks_A          280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA  359 (567)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred             EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence            77642          222 678899999887777777788999999987654222 122334557788999998866666


Q ss_pred             EeCCCcEEEEECCCCCCCCCCCCCccceEEec-----cCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCC-----e
Q 010748          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ-----P  439 (502)
Q Consensus       371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~-----~  439 (502)
                      ...++.|.++|+.+.         +.+..+..     |.+.-..+ ++|+++.+.+++. .++.|.++|....+     .
T Consensus       360 ~~~sn~V~ViD~~t~---------kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~  429 (567)
T 1qks_A          360 ANARNKLVVIDTKEG---------KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW  429 (567)
T ss_dssp             EGGGTEEEEEETTTT---------EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             eCCCCeEEEEECCCC---------cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence            777899999999986         44444433     33222222 5787535556654 46899999998722     2


Q ss_pred             eEEEEecCCCCcEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCC
Q 010748          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSD  482 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~------dg~i~vwd~~~~  482 (502)
                      ..+..+....+.-..+.++|+++++.+....      .+.|.|+|+.+.
T Consensus       430 kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          430 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            2445554433333457789999975554311      358999999876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=2.9e-12  Score=136.28  Aligned_cols=254  Identities=9%  Similarity=0.022  Sum_probs=165.4

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+..+.|||+|++||.+...+......||+++...+   ......  ........+.|       +|||+.|+.++.
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg---~~~~~~--~~~~~~~~~~w-------spDg~~l~~~~~  190 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDV--LERVKFSCMAW-------THDGKGMFYNAY  190 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEE--EEEECSCCEEE-------CTTSSEEEEEEC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---CCCccc--ccCcccceEEE-------EeCCCEEEEEEE
Confidence            334678899999999999887765433346777776554   222110  00001234566       899999999988


Q ss_pred             CCc----------------EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748          218 EPA----------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       218 dg~----------------I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      ++.                |++|++.+.....                       ........|...+..+.|+|+++ +
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-----------------------~~v~~~~~~~~~~~~~~~SpDg~-~  246 (710)
T 2xdw_A          191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-----------------------ILCAEFPDEPKWMGGAELSDDGR-Y  246 (710)
T ss_dssp             CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-----------------------EEEECCTTCTTCEEEEEECTTSC-E
T ss_pred             CCccccccccccccCCCCEEEEEECCCCcccc-----------------------eEEeccCCCCeEEEEEEEcCCCC-E
Confidence            765                9999987532110                       01111123556688999999965 5


Q ss_pred             EEEEec-----CCcEEEEeCCC------Ce-eeEeeccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCC--
Q 010748          282 LASASA-----DKQVKIWDVAA------GK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTH--  344 (502)
Q Consensus       282 l~sgs~-----dg~v~vwd~~~------~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--  344 (502)
                      |+.++.     +..|++||+.+      +. ....+..+...+.. .|+|++..+++.+..+   +.|.+||+.++..  
T Consensus       247 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~  325 (710)
T 2xdw_A          247 VLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK  325 (710)
T ss_dssp             EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred             EEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence            555543     56899999986      43 35566666666655 4888884444444433   3699999987642  


Q ss_pred             ccceEeecC--CeeEEEeCCCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748          345 SGFKWAVAA--DVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       345 ~~~~~~~~~--~v~~v~~~~~~~~~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ......+..  .+..++|++. ..++++...++.  |.+|++.++         ..+..+..+.+.+.++.++|++..++
T Consensus       326 ~~~l~~~~~~~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          326 WKVLVPEHEKDVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             CEEEECCCSSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             ceeccCCCCCCeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCC---------CEEEecCCCCceEEEEecCCCCCEEE
Confidence            122333333  5778899864 457778888885  566676554         45566777778889999999874555


Q ss_pred             EEEeC---CCcEEEEECCCCC
Q 010748          421 ATGST---DKMVKLWDLSNNQ  438 (502)
Q Consensus       421 ~t~s~---dg~i~vwd~~~~~  438 (502)
                      ++.+.   .+.|++||+.+++
T Consensus       396 ~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEECSSCCCEEEEEETTSSS
T ss_pred             EEEeCCCCCCEEEEEECCCCc
Confidence            55443   4789999998876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=8.8e-13  Score=126.54  Aligned_cols=235  Identities=9%  Similarity=0.017  Sum_probs=160.2

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +++++++...++.|.+||..++..+..+                            ........+++++++ .++++...
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i----------------------------~~~~~p~~i~~~~~g-~lyv~~~~  103 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTFKEVGRI----------------------------TGFTSPRYIHFLSDE-KAYVTQIW  103 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTCCEEEEE----------------------------ECCSSEEEEEEEETT-EEEEEEBS
T ss_pred             CCEEEEEEcCCCEEEEEECcccEEEEEc----------------------------CCCCCCcEEEEeCCC-eEEEEECC
Confidence            4556666666799999999864432211                            123567889998884 45555447


Q ss_pred             CCcEEEEeCCCCeeeEeeccCC-----CCeEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCccceEeecCCeeEEEeC
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHT-----DKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      ++.|.+||+.+++....+....     .....|++ ..+ .++++.. .++.|.++|+.+.+... ..........++++
T Consensus       104 ~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~-~i~~g~~p~~i~~~  180 (328)
T 3dsm_A          104 DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVD-ELTIGIQPTSLVMD  180 (328)
T ss_dssp             CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEE-EEECSSCBCCCEEC
T ss_pred             CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEE-EEEcCCCccceEEc
Confidence            8999999999999887775322     14567777 333 4444443 48999999999876544 33445567788999


Q ss_pred             CCCCCEEEEEeCC----------CcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          362 PHAEHSFVVSLED----------GTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       362 ~~~~~~~~~~~~d----------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      |++. +++++..+          +.|.++|..+.         .....+... ......++|+|++ +.|+++..  .|.
T Consensus       181 ~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~  247 (328)
T 3dsm_A          181 KYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIW  247 (328)
T ss_dssp             TTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEE
T ss_pred             CCCC-EEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEE
Confidence            9765 55555443          78999999876         444444432 2368999999988 66666554  899


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEE----eCCCcEEEEECCCCcccccc
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG----GSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg----~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +||+.+++................++++|++..++++.    ..++.|.+||.. ++.+.+.
T Consensus       248 ~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          248 RMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             EEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             EEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            99998876321111122245688999999666577776    678899999998 7766543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=1.1e-12  Score=125.95  Aligned_cols=236  Identities=8%  Similarity=0.029  Sum_probs=158.8

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |++++..++..+.++.++.|.-.                              ....+..+...+.+++|++++ .++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~g-~l~~~   61 (333)
T 2dg1_A           13 YSGKSNSAVPIISESELQTITAE------------------------------PWLEISKKGLQLEGLNFDRQG-QLFLL   61 (333)
T ss_dssp             SCGGGGCSSCCCCGGGSCEEECE------------------------------EEEEEESSCCCEEEEEECTTS-CEEEE
T ss_pred             ecCCccceeEEeecccCcccccc------------------------------eeEEEeccCccccCcEECCCC-CEEEE
Confidence            36777777777778888888321                              011122455667899999984 57778


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEecCCCCCccceE--eecCCeeEE
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGFKW--AVAADVESL  358 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~v  358 (502)
                      +..++.|.+||..+++.......+...+.+++|++++ +++++...+    +.|.+||..+........  .....+..+
T Consensus        62 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i  140 (333)
T 2dg1_A           62 DVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDM  140 (333)
T ss_dssp             ETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEE
T ss_pred             ECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccce
Confidence            8889999999998887665544566789999999998 777776666    689999988766432111  123568899


Q ss_pred             EeCCCCCCEEEEEeC------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          359 AWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       359 ~~~~~~~~~~~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      +++|++. ++++...      .+.|..|+..+.          .+..+..+...+..++|+|++..++++.+.++.|.+|
T Consensus       141 ~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~  209 (333)
T 2dg1_A          141 VFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR----------TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRI  209 (333)
T ss_dssp             EECTTSC-EEEEECCCBTTBCCEEEEEECTTSC----------CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             EECCCCC-EEEEeccccccCCCceEEEEeCCCC----------EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEE
Confidence            9999864 5554432      355666665543          1222323344578999999983355555668899999


Q ss_pred             ECCC-CCeeE------EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          433 DLSN-NQPSC------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       433 d~~~-~~~~~------~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      ++.. +....      ......+ ..+..+++++++. ++++...++.|.+|+. .++.+.
T Consensus       210 d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~-~g~~~~  267 (333)
T 2dg1_A          210 ALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIG  267 (333)
T ss_dssp             EECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEE
T ss_pred             EecCCCcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECC-CCCEEE
Confidence            9964 22111      1112222 4688899999998 5776667789999998 444443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.54  E-value=1.3e-12  Score=121.35  Aligned_cols=241  Identities=9%  Similarity=0.026  Sum_probs=158.1

Q ss_pred             ccccccccCCCceEE-EEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          141 DLEDMTINPNDAVIV-CARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ...++.+.|++++++ +....+     .|+.++....   ...... ..-...|.++++       +++|+++++.. ++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~-----~i~~~~~~~~---~~~~~~-~~~~~~p~~i~~-------~~~g~l~v~~~-~~   87 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYG-----RVVKLATGST---GTTVLP-FNGLYQPQGLAV-------DGAGTVYVTDF-NN   87 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSC-----EEEEECC--------EECC-CCSCCSCCCEEE-------CTTCCEEEEET-TT
T ss_pred             CccceEECCCCCEEEEccCCCC-----cEEEecCCCc---ccceEe-eCCcCCcceeEE-------CCCCCEEEEcC-CC
Confidence            557789999999777 434444     6666765432   111100 011123455555       67888766666 88


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|.+|+.......                           .........+.+|++.+++ +++++...++.|.+|+..+.
T Consensus        88 ~i~~~d~~~~~~~---------------------------~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~  139 (270)
T 1rwi_B           88 RVVTLAAGSNNQT---------------------------VLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSK  139 (270)
T ss_dssp             EEEEECTTCSCCE---------------------------ECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCC
T ss_pred             EEEEEeCCCceEe---------------------------eeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCc
Confidence            9999997642110                           0001223568899999984 57777777889999987655


Q ss_pred             eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEE
Q 010748          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  379 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i  379 (502)
                      ............+.++++++++ +++++...++.|.+|+................+..+++++++ .++++...++.|.+
T Consensus       140 ~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          140 TQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVK  217 (270)
T ss_dssp             SCEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEE
T ss_pred             eeEeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEE
Confidence            4433333334567899999988 777777778899999987654332222222568899999987 56777777889999


Q ss_pred             EECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       380 ~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      |+....         ........+...+.++++++++ +++++...++.|++|++...+
T Consensus       218 ~~~~~~---------~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          218 LLAGST---------TSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             ECTTCS---------CCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred             EcCCCC---------cceeeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence            998654         1111112233568999999998 788888899999999987654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.53  E-value=2.9e-12  Score=136.98  Aligned_cols=288  Identities=8%  Similarity=0.015  Sum_probs=172.6

Q ss_pred             cCCCceEEEEEecCCcceeEEEEEecC---CCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-----C
Q 010748          148 NPNDAVIVCARNEDDVSHLEVYILEES---DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-----P  219 (502)
Q Consensus       148 ~p~~~~l~~~~~~~~~~~l~v~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d-----g  219 (502)
                      +|+|++++....++....-.+|..+..   ... ..............    .|....+.|||||++||.++.+     .
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~lld~~~l~~~~----~~~~~~~~~SPDG~~la~~~~~~G~e~~  189 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK-GRVLLDPNTWAKDG----ATALDAWAASDDGRLLAYSVQDGGSDWR  189 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCC-CEEEECGGGCC--------EEEEEEEECTTSSEEEEEEEETTCSEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC-CEEEECHHHhccCC----CEEEEeEEECCCCCEEEEEEcCCCCceE
Confidence            499999998887765445678888754   221 11111110000000    0111123348999999987654     4


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc---------
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ---------  290 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~---------  290 (502)
                      .|++||+.+++.+..                            ..+...+..++|+|+ . .|+.++.++.         
T Consensus       190 ~i~v~dl~tg~~~~~----------------------------~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          190 TVKFVGVADGKPLAD----------------------------ELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEETTTCCEEEE----------------------------EEEEEESCCCEESTT-S-EEEEEECCCC--------C
T ss_pred             EEEEEECCCCCCCCc----------------------------cCCCceeccEEEECC-C-EEEEEEecCcccccccccC
Confidence            699999987543210                            011222468899999 6 5555555543         


Q ss_pred             -----EEEEeCCCCe----eeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCC--CCccceEeecCC
Q 010748          291 -----VKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARIS--THSGFKWAVAAD  354 (502)
Q Consensus       291 -----v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~--~~~~~~~~~~~~  354 (502)
                           |++|++.++.    .+.....+...+.++.|+|+| ++|+..+.+     ..|.+||+.++  ............
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                 8999998765    222223344468899999999 666665543     38999999876  312223333334


Q ss_pred             eeEEEeCCCCCCEEEEEeC---CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748          355 VESLAWDPHAEHSFVVSLE---DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      +....+ |++..+++.+..   ++.|.+|++.+..       ......+..+...+..++++  +..++++...++..+|
T Consensus       319 ~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          319 QWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGST-------PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQV  388 (741)
T ss_dssp             CEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSS-------CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEE
T ss_pred             eEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCc-------cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEE
Confidence            444433 777644444432   4459999987631       01222334444556677777  3378888888998777


Q ss_pred             EECC-CCCeeEEEEecC-CCCcEEEEEEcCCCCcEEEEEeC---CCcEEEEECCCCc
Q 010748          432 WDLS-NNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGS---KGKLEIWDTLSDA  483 (502)
Q Consensus       432 wd~~-~~~~~~~~~~~~-~~~~v~~~~~spd~~~ll~sg~~---dg~i~vwd~~~~~  483 (502)
                      |.+. .+.  ....+.. ..+.+..+.++|++..++++.++   .++|++||+.+++
T Consensus       389 ~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          389 LAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEETTSC--EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEeCCCC--ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7554 233  2333433 35778999999998865554443   3689999998876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.53  E-value=4.3e-12  Score=118.38  Aligned_cols=211  Identities=12%  Similarity=0.030  Sum_probs=154.2

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc-cceeeEEeccCCCcEEEEEe
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .+++|++++.++.|.+||..+++.+..                           +..+. ..+.++.+.|+ +++|+  +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~---------------------------~~~~~~~~~~~~~~~pd-G~ilv--s   53 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWE---------------------------YPLEKGWECNSVAATKA-GEILF--S   53 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEE---------------------------EECCTTCCCCEEEECTT-SCEEE--E
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEE---------------------------eCCCccCCCcCeEECCC-CCEEE--e
Confidence            478999999999999999876544332                           22232 46788999999 45777  4


Q ss_pred             cCCcEEEEeCCCCeeeEeeccC-CCCeEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCccceEee-------cCCeeE
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWAV-------AADVES  357 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~-------~~~v~~  357 (502)
                      .++.|..||. +++.+..+..+ ...+.++.+.+++ +++++.+. ++.|..++.. ++... .+..       ......
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~~-Gk~l~-~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNMK-GEVLS-KTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECTT-SCEEE-EEEECCSCSSGGGSCSC
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeCC-CCEEE-EEeccCCCCcccccccC
Confidence            5778999998 89999998764 3578899999999 88888777 7788877753 33221 1221       123445


Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      +++.+++. ++++...++.|..||.. +         +.++++..+ ..+.++.+.+++ +++++++.++.|..+|..++
T Consensus       130 v~~~~~G~-~lv~~~~~~~v~~~d~~-G---------~~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          130 INKNKKGN-YLVPLFATSEVREIAPN-G---------QLLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             CEECTTSC-EEEEETTTTEEEEECTT-S---------CEEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTC
T ss_pred             ceECCCCC-EEEEecCCCEEEEECCC-C---------CEEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCC
Confidence            67788765 78888899999999987 5         677777765 345667788887 88888888889999999988


Q ss_pred             CeeEEEEecCC------CCcEEEEEEcCCCCcEEEEE
Q 010748          438 QPSCIASRNPK------AGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       438 ~~~~~~~~~~~------~~~v~~~~~spd~~~ll~sg  468 (502)
                      +.  +..+..+      ...+..++..++|. ++++.
T Consensus       197 ~~--~w~~~~~~~~~~~l~~~~~~~~~~~G~-i~v~~  230 (276)
T 3no2_A          197 RI--VRRVNANDIEGVQLFFVAQLFPLQNGG-LYICN  230 (276)
T ss_dssp             CE--EEEEEGGGSBSCCCSEEEEEEECTTSC-EEEEE
T ss_pred             cE--EEEecCCCCCCccccccccceEcCCCC-EEEEe
Confidence            84  4444321      23478899999998 46655

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.51  E-value=4.8e-11  Score=116.20  Aligned_cols=292  Identities=12%  Similarity=0.045  Sum_probs=176.4

Q ss_pred             cccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec---------
Q 010748          146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS---------  216 (502)
Q Consensus       146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~---------  216 (502)
                      ...|+++.+.++...+....+.|++|+....   .+.  ..+.....| .+.       ++|+|++|+++.         
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~--~~i~~g~~p-~i~-------~spDg~~lyv~n~~~~~~~rg   93 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSG---SIL--GHVNGGFLP-NPV-------AAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCC---eEE--EEecCCCCC-CeE-------ECCCCCEEEEEeccccccccC
Confidence            3447777777665311111116777776554   322  223333333 333       389999999886         


Q ss_pred             -CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec--CCcEEE
Q 010748          217 -MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKI  293 (502)
Q Consensus       217 -~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--dg~v~v  293 (502)
                       .++.|.+||..+........+.+.               .    .. .+......++|+|+++ +|+.++.  ++.|.+
T Consensus        94 ~~~~~v~viD~~t~~~~~~i~~~~~---------------~----~~-~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~v  152 (373)
T 2mad_H           94 KRTDYVEVFDPVTFLPIADIELPDA---------------P----RF-DVGPYSWMNANTPNNA-DLLFFQFAAGPAVGL  152 (373)
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCc---------------c----cc-ccCCCccceEECCCCC-EEEEEecCCCCeEEE
Confidence             367899999976543332211100               0    00 0112345889999955 6666653  578999


Q ss_pred             EeCCCCeeeEe-eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-----eecCC-eeEEEeCCCCCC
Q 010748          294 WDVAAGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-----AVAAD-VESLAWDPHAEH  366 (502)
Q Consensus       294 wd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~-v~~v~~~~~~~~  366 (502)
                      +| .+++.+.. +.. ..   |+.+.|.+.+.+++.+.||.+.+++. +++......     ....+ .....+.+++..
T Consensus       153 iD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  226 (373)
T 2mad_H          153 VV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR  226 (373)
T ss_pred             EE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCE
Confidence            99 99998877 642 22   24566777677888889999999999 655442111     11111 123445565554


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec----------cCCCeeEEEEcCCCCCEEEEEe---------CCC
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVPNLLATGS---------TDK  427 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~sp~~~~~l~t~s---------~dg  427 (502)
                      ++++. ..+.+.+.|+.....       ..+..+..          .......+.++|++..++++..         ..+
T Consensus       227 ~~~~~-~~~~v~vid~~~~~~-------~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          227 IVWPV-YSGKILQADISAAGA-------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             EEEEc-CCceEEEEeccCCcc-------eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            44444 678999999875421       11111111          1233445788998844444332         135


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCcccccc
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~-~dg~i~vwd~~~~~~~~~~  488 (502)
                      .|.++|+.+.+.  +..+. ..+...+++|+||++++|+++. .++.|.|||+.+++.+.+.
T Consensus       299 ~V~VID~~t~~v--v~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          299 EVTSVTGLVGQT--SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             eEEEEECCCCEE--EEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            799999998874  33433 2235889999999985566666 5899999999999988773

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.50  E-value=5.5e-11  Score=111.83  Aligned_cols=277  Identities=10%  Similarity=0.064  Sum_probs=178.3

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ....++.+.+++++.++....+     .|+.++.. .   .+...........|.++.+       .++|+++++...++
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~-----~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~-------~~~g~l~v~~~~~~   83 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKAN-----KISSLDQS-G---RIKEFEVPTPDAKVMCLIV-------SSLGDIWFTENGAN   83 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTT-----EEEEECTT-S---CEEEEECSSTTCCEEEEEE-------CTTSCEEEEETTTT
T ss_pred             CCcceeeECCCCCEEEEcCCCC-----eEEEECCC-C---ceEEEECCCCCCcceeEEE-------CCCCCEEEEecCCC
Confidence            4667899999999888765555     67777655 3   2222110001133455544       67888888777778


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|.+|+.. +.. ..                         .........+.++++.++ +.++++...++.|..|+.. +
T Consensus        84 ~v~~~d~~-g~~-~~-------------------------~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           84 KIGKLSKK-GGF-TE-------------------------YPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             EEEEECTT-SCE-EE-------------------------EECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTT-S
T ss_pred             eEEEECCC-CCe-EE-------------------------ecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCC-C
Confidence            89999876 221 10                         011112356889999988 4566666667899999987 6


Q ss_pred             eeeE-eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748          300 KCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       300 ~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~dg~v  377 (502)
                      +... .+......+.++++.+++ +++++...++.|..|+. .+....... .....+..+++++++ .++++....+.|
T Consensus       135 ~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i  211 (300)
T 2qc5_A          135 TIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKI  211 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEE
T ss_pred             CEEEccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEE
Confidence            5442 233345678999999998 66666666789999998 433222111 123458899999976 456655567789


Q ss_pred             EEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEE
Q 010748          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF  457 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~  457 (502)
                      .+|+. ++        ......+..+...+.++++.+++ ++.++...++.|..|+. +++. ...........+.++++
T Consensus       212 ~~~~~-~g--------~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~  279 (300)
T 2qc5_A          212 GRITT-TG--------EISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITF  279 (300)
T ss_dssp             EEECT-TC--------CEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEE
T ss_pred             EEEcC-CC--------cEEEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEe
Confidence            99998 33        12222233345678999999987 66666666789999998 4442 23333334456889999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEEC
Q 010748          458 SEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       458 spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      .++|. ++++ +.. .|..++.
T Consensus       280 ~~~g~-l~v~-~~~-~i~~~~p  298 (300)
T 2qc5_A          280 GKDGS-VWFA-LKC-KIGKLNL  298 (300)
T ss_dssp             CTTSC-EEEE-CSS-EEEEEEE
T ss_pred             CCCCC-EEEE-ccC-ceEEeCC
Confidence            99997 4554 444 6777765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.49  E-value=2.9e-12  Score=123.69  Aligned_cols=228  Identities=12%  Similarity=0.160  Sum_probs=144.3

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d-  218 (502)
                      ..+..+.|+|+|+.|+.++..++.....||+++...+....+..++     . ..++.|       +|+|+.|+.++.+ 
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-----~-~~~~~w-------spdg~~l~~~~~~~  125 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-----N-IRSLEW-------NEDSRKLLIVGFKR  125 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-----E-EEEEEE-------CTTSSEEEEEEECC
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-----C-ccceeE-------CCCCCEEEEEEccC
Confidence            3567899999999999887654223557888886554211222222     1 345666       8999999888642 


Q ss_pred             --------------------------CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          219 --------------------------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       219 --------------------------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                                                ..|.+|++.++....                           .+.. . .+..+
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~---------------------------~l~~-~-~~~~~  176 (347)
T 2gop_A          126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE---------------------------EFEK-P-RFSSG  176 (347)
T ss_dssp             CC---------CCCC---------CEEEEEEEETTTTEEEE---------------------------EEEE-E-TTCEE
T ss_pred             CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe---------------------------eecC-C-Ccccc
Confidence                                      468888886432100                           1111 2 67889


Q ss_pred             EeccCCCcEEEEEecCC-------cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEE
Q 010748          273 AWNKEFRNILASASADK-------QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--------RSVVMK  337 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg-------~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--------g~i~iw  337 (502)
                      +|+|++  ++++++.++       ...||.+.+++. ..+..+ ..+.++  +|+| +.|+.++.+        ..|.+|
T Consensus       177 ~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~  249 (347)
T 2gop_A          177 IWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIY  249 (347)
T ss_dssp             EEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEE
T ss_pred             cCCCCe--EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEE
Confidence            999994  777776542       344444445554 334334 455544  8999 566655543        368888


Q ss_pred             ecCCCCCccceEeecCCeeE-EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          338 DARISTHSGFKWAVAADVES-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~-v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      |  ++........+...+.. +.|+ ++  ++++++.++.+++| +.++         .. ..+..+...|.+++|+|  
T Consensus       250 d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g---------~~-~~~~~~~~~v~~~~~s~--  311 (347)
T 2gop_A          250 D--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDG---------EI-KPIAKGRHWIMGFDVDE--  311 (347)
T ss_dssp             C--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESS---------SE-EEEECSSSEEEEEEESS--
T ss_pred             C--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCC---------ce-EEEecCCCeEEeeeeeC--
Confidence            8  33322222233456775 8998 65  88888999999999 8732         33 34445677899999998  


Q ss_pred             CCEEEEEeCCCcE-EEEECC
Q 010748          417 PNLLATGSTDKMV-KLWDLS  435 (502)
Q Consensus       417 ~~~l~t~s~dg~i-~vwd~~  435 (502)
                       .++++++.++.. .||.+.
T Consensus       312 -~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          312 -IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             -SEEEEEECSSSCCEEEEES
T ss_pred             -cEEEEEcCCCChHHheEeC
Confidence             477777776654 777765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.49  E-value=1.7e-11  Score=118.06  Aligned_cols=295  Identities=12%  Similarity=0.082  Sum_probs=180.9

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec--------
Q 010748          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--------  216 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~--------  216 (502)
                      ....|+++.+.++........-.|++++....   .+  -..+.....|- +..       +|+|++|++++        
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v--~~~I~vG~~P~-va~-------spDG~~lyVan~~~~r~~~  104 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RV--IGMIDGGFLPN-PVV-------ADDGSFIAHASTVFSRIAR  104 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EE--EEEEEECSSCE-EEE-------CTTSSCEEEEEEEEEETTE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCC---eE--EEEEECCCCCc-EEE-------CCCCCEEEEEccccccccc
Confidence            45579999888887531000127888887654   22  23334444442 443       89999988875        


Q ss_pred             --CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec--CCcEE
Q 010748          217 --MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVK  292 (502)
Q Consensus       217 --~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--dg~v~  292 (502)
                        .++.|.+||..+......+.+-++               +     ..........++|+|+++ +|+.+..  ++.|.
T Consensus       105 G~~~~~VsviD~~t~~v~~~I~v~~g---------------~-----r~~~g~~P~~~a~spDGk-~lyVan~~~~~~Vs  163 (386)
T 3sjl_D          105 GERTDYVEVFDPVTLLPTADIELPDA---------------P-----RFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVG  163 (386)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEETTC---------------C-----CCCBSCCGGGEEECTTSS-EEEEEECSSSCEEE
T ss_pred             CCCCCEEEEEECCCCeEEEEEECCCc---------------c-----ccccCCCCceEEEcCCCC-EEEEEEcCCCCeEE
Confidence              357899999987554433222110               0     000122456789999965 5555543  68999


Q ss_pred             EEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCccceEee----cCCe-eEEEeC-CCCC
Q 010748          293 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAV----AADV-ESLAWD-PHAE  365 (502)
Q Consensus       293 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~----~~~v-~~v~~~-~~~~  365 (502)
                      ++|+.+++.+.++... +   |....|.+.+.+++.+.||.+.+.++.. ++........    ...+ ....|. +++ 
T Consensus       164 VID~~t~~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-  238 (386)
T 3sjl_D          164 VVDLEGKAFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-  238 (386)
T ss_dssp             EEETTTTEEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-
T ss_pred             EEECCCCcEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-
Confidence            9999999999988532 2   1223355557788889999999999876 3332111011    1111 123554 444 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe----------ccCCCeeEEEEcCCCCCEEEEEeC---------C
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH----------AHDKAVCTISYNPLVPNLLATGST---------D  426 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~~~~~l~t~s~---------d  426 (502)
                       .++..+.+|.|+++|+.....       .....+.          ........+++++.+..++++-..         .
T Consensus       239 -~~~~vs~~g~V~v~d~~~~~~-------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~  310 (386)
T 3sjl_D          239 -RLVWPTYTGKIHQIDLSSGDA-------KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  310 (386)
T ss_dssp             -EEEEEBTTSEEEEEECTTSSC-------EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             -cEEEEeCCCEEEEEECCCCcc-------eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence             344455689999999976521       1111111          112344567788987444444321         2


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCccccccc
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +.|.++|+.+.+........   ..+.+|++++|++ .++++...++.|.|+|..+++.+++.-
T Consensus       311 ~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          311 RFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             EEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence            56999999999853333332   3688999999996 444445568999999999999887654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.49  E-value=8.6e-12  Score=117.64  Aligned_cols=204  Identities=7%  Similarity=0.034  Sum_probs=144.9

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      .+.....+++|+|++..+++++..++.|.+|+..++  ...+..+...+.++++++++ +++++...++.|.+||..+++
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc
Confidence            455678899999995558889999999999999877  56666677889999999998 777776667899999997766


Q ss_pred             CccceEee----cCCeeEEEeCCCCCCEEEE----Ee-------------CCCcEEEEECCCCCCCCCCCCCccceEEec
Q 010748          344 HSGFKWAV----AADVESLAWDPHAEHSFVV----SL-------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       344 ~~~~~~~~----~~~v~~v~~~~~~~~~~~~----~~-------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                      ........    ...+..++++|++. ++++    |+             ..+.|..++.. +          .+..+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g----------~~~~~~~  169 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G----------TLSAPIR  169 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S----------CEEEEEC
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-C----------CEEEeec
Confidence            43321111    23467799999875 5555    22             13456666554 2          2333455


Q ss_pred             cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC-CCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~-~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      +......++|+|++ ++|++.+.++.|++|++. ++.. .....+..+.+.+.+++++++|. ++++.  ++.|.+|+..
T Consensus       170 ~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          170 DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD  245 (296)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT
T ss_pred             CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC
Confidence            66678999999998 666888888999999997 4443 11222233556677899999998 45544  7889999986


Q ss_pred             CCccccc
Q 010748          481 SDAGISN  487 (502)
Q Consensus       481 ~~~~~~~  487 (502)
                       ++.+..
T Consensus       246 -g~~~~~  251 (296)
T 3e5z_A          246 -GDELGR  251 (296)
T ss_dssp             -SCEEEE
T ss_pred             -CCEEEE
Confidence             554443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.47  E-value=7.7e-11  Score=110.75  Aligned_cols=229  Identities=7%  Similarity=0.026  Sum_probs=157.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +++|+++++...++.|.+|+.. .. ....                         ....+...+.++++.++ +.++++.
T Consensus        23 d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~-------------------------~~~~~~~~~~~i~~~~~-g~l~v~~   74 (299)
T 2z2n_A           23 SDKGKVWITQHKANMISCINLD-GK-ITEY-------------------------PLPTPDAKVMCLTISSD-GEVWFTE   74 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-CC-EEEE-------------------------ECSSTTCCEEEEEECTT-SCEEEEE
T ss_pred             CCCCCEEEEecCCCcEEEEcCC-CC-eEEe-------------------------cCCcccCceeeEEECCC-CCEEEeC
Confidence            6789888877767899999976 21 1100                         01123467889999998 4567666


Q ss_pred             ecCCcEEEEeCCCCee-eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCC
Q 010748          286 SADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH  363 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~  363 (502)
                      ..++.|..|+.. ++. ...+......+.++++.+++ .++++...++.|.+||. ++....... .....+..++++++
T Consensus        75 ~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           75 NAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             CCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence            667899999986 432 22222345678999999988 77777777889999998 433222111 12346889999997


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      +. ++++....+.|..||. ++.        ........+...+.++++++++ .+.++....+.|.+|+. +++.. ..
T Consensus       152 g~-l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-~~  218 (299)
T 2z2n_A          152 NA-LWFTENQNNAIGRITE-SGD--------ITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEIT-EF  218 (299)
T ss_dssp             SC-EEEEETTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-EE
T ss_pred             CC-EEEEeCCCCEEEEEcC-CCc--------EEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEE-EE
Confidence            64 6666666789999998 441        1112233345568899999987 77777666889999999 66532 23


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      ....+...+.++++++++. ++++...++.|.+|+.
T Consensus       219 ~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          219 KIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS  253 (299)
T ss_dssp             ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET
T ss_pred             ECCCCCCCceeEEECCCCC-EEEeccCCceEEEECC
Confidence            3344556799999999998 5666556789999998

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.47  E-value=5.8e-12  Score=133.65  Aligned_cols=257  Identities=9%  Similarity=-0.008  Sum_probs=161.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCc-ceeeeecCCCCCCCCCCEEEEe
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP-LCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      .|...+..+.|||+|++||.+...+......||+++...+   ....  ...++... ..+.|       +|+|+.|+.+
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg---~~~~--~~~~~~~~~~~~~w-------spDg~~l~~~  185 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG---EWSK--VDVIEGGKYATPKW-------TPDSKGFYYE  185 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC---CBCS--SCCBSCCTTCCCEE-------CTTSSEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC---CCcC--CcccCcccccceEE-------ecCCCEEEEE
Confidence            3455788999999999999776544221246666665554   2210  00111111 34455       8999999999


Q ss_pred             cCCCc-------------EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          216 SMEPA-------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       216 ~~dg~-------------I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +.+..             |++|++.+.....                       ........|...+.++.|+|+++ +|
T Consensus       186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-----------------------~lv~~~~~~~~~~~~~~~SpDG~-~l  241 (695)
T 2bkl_A          186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-----------------------TVVHERTGDPTTFLQSDLSRDGK-YL  241 (695)
T ss_dssp             ECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-----------------------EEEECCCCCTTCEEEEEECTTSC-CE
T ss_pred             EecCCCCCccccCCCCCEEEEEECCCCchhc-----------------------eEEEecCCCCEEEEEEEECCCCC-EE
Confidence            88776             9999997643211                       11112234666789999999965 55


Q ss_pred             EEEecCC----cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCc--cceEee--
Q 010748          283 ASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDARISTHS--GFKWAV--  351 (502)
Q Consensus       283 ~sgs~dg----~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~--~~~~~~--  351 (502)
                      +.++.++    .|++|+..+++ ...+..+...+....| +++ .+++++.   .++.|.+||+.++...  .....+  
T Consensus       242 ~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  318 (695)
T 2bkl_A          242 FVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS  318 (695)
T ss_dssp             EEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred             EEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence            5555555    67777765554 3444445556666667 667 4555544   2588999999876531  222322  


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeC---CC
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                      ...+..++|+  +..++++...++..++|.+...        ......+..+ .+.+..++++|++..++++.+.   .+
T Consensus       319 ~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~--------g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  388 (695)
T 2bkl_A          319 SASLLSVSIV--GGHLSLEYLKDATSEVRVATLK--------GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR  388 (695)
T ss_dssp             SCEEEEEEEE--TTEEEEEEEETTEEEEEEEETT--------CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred             CCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC--------CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence            3347788887  3457888889998888866522        1334445544 6678888999987445544443   46


Q ss_pred             cEEEEECCCCCeeEE
Q 010748          428 MVKLWDLSNNQPSCI  442 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~  442 (502)
                      .|++||+.+++...+
T Consensus       389 ~v~~~d~~~g~~~~l  403 (695)
T 2bkl_A          389 QIYKTSVSTGKSELW  403 (695)
T ss_dssp             EEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCcEEEE
Confidence            799999988774333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.43  E-value=4.1e-11  Score=118.34  Aligned_cols=230  Identities=8%  Similarity=0.014  Sum_probs=154.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +++++++++...++.|++|++.+.....                           .... ..... ++|++++ ..|+++
T Consensus       139 d~~g~lyv~d~~~~~I~~id~~~g~~~~---------------------------~~~~-~~~~~-ia~~~~g-~~l~~~  188 (409)
T 3hrp_A          139 VGNNTVLAYQRDDPRVRLISVDDNKVTT---------------------------VHPG-FKGGK-PAVTKDK-QRVYSI  188 (409)
T ss_dssp             CSTTEEEEEETTTTEEEEEETTTTEEEE---------------------------EEET-CCBCB-CEECTTS-SEEEEE
T ss_pred             eCCCCEEEEecCCCcEEEEECCCCEEEE---------------------------eecc-CCCCc-eeEecCC-CcEEEE
Confidence            7889988888888999999987432110                           0011 12233 8999995 477777


Q ss_pred             ecCC--cEEEEeCCCCeeeEee----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc----eEeecCCe
Q 010748          286 SADK--QVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----KWAVAADV  355 (502)
Q Consensus       286 s~dg--~v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~v  355 (502)
                      ..++  .|.+|+...+.....+    ......+.+++++|.+.. |+.+..++.|+.||..+......    ........
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCC
Confidence            7655  7999998766543344    224567789999995524 55577788999999987653221    11111111


Q ss_pred             -e-EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc---------------CCCeeEEEEcCCCCC
Q 010748          356 -E-SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------DKAVCTISYNPLVPN  418 (502)
Q Consensus       356 -~-~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~sp~~~~  418 (502)
                       . .++|+|.+..++++...++.|+.|+....           +..+.++               -.....++++|++ .
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~  335 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-N  335 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-C
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-C
Confidence             3 89999976666777777889999987632           2222222               1347899999998 7


Q ss_pred             EEEEEe-CCCcEEEEECCCCCeeEEEEecC------------CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          419 LLATGS-TDKMVKLWDLSNNQPSCIASRNP------------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       419 ~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~------------~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      ++++-+ .++.|+.|++.++....+.....            .......+++++++. ++++-..+++|+.+.+
T Consensus       336 lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          336 FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence            888877 88999999987776332222110            124588999999976 6777778888888775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.43  E-value=2.1e-11  Score=116.92  Aligned_cols=199  Identities=8%  Similarity=-0.037  Sum_probs=140.6

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      .....+.+..  ..++++...++.|.+||..+++.+.++. .......+++++++ .++++...++.|.+||+.+.+...
T Consensus        44 ~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           44 DVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             SCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             ccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEE
Confidence            4456777753  4566677778999999999999988885 35678899998888 665555589999999998876543


Q ss_pred             ceEeecC------CeeEEEeCCCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          347 FKWAVAA------DVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       347 ~~~~~~~------~v~~v~~~~~~~~~~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                       ......      ....+++  .+..++++.. .++.|.+||+.+.         ..+..+... .....++++|++ ++
T Consensus       120 -~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~---------~~~~~i~~g-~~p~~i~~~~dG-~l  185 (328)
T 3dsm_A          120 -YIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD---------KVVDELTIG-IQPTSLVMDKYN-KM  185 (328)
T ss_dssp             -EEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT---------EEEEEEECS-SCBCCCEECTTS-EE
T ss_pred             -EEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC---------eEEEEEEcC-CCccceEEcCCC-CE
Confidence             233333      5667777  3443444444 4889999999886         445555433 345788999987 66


Q ss_pred             EEEEeCC----------CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          420 LATGSTD----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       420 l~t~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ++++..+          +.|.+||..+++........ .......++|+|++.+ |.++..  .|.+||+.+++....
T Consensus       186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~~  259 (328)
T 3dsm_A          186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDT-LYWINN--DIWRMPVEADRVPVR  259 (328)
T ss_dssp             EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCE-EEEESS--SEEEEETTCSSCCSS
T ss_pred             EEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCE-EEEEcc--EEEEEECCCCceeee
Confidence            6666554          78999999988743222222 1236789999999986 444443  899999998876543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=9.3e-11  Score=110.65  Aligned_cols=226  Identities=9%  Similarity=0.065  Sum_probs=148.7

Q ss_pred             CC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      ++ ++.++++....+.|..|+..+....                             ...+...+.++++++++. ++++
T Consensus        21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------------------------~~~~~~~~~~i~~~~dG~-l~v~   70 (297)
T 3g4e_A           21 EEVSNSLLFVDIPAKKVCRWDSFTKQVQ-----------------------------RVTMDAPVSSVALRQSGG-YVAT   70 (297)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEE-----------------------------EEECSSCEEEEEEBTTSS-EEEE
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCCcEE-----------------------------EEeCCCceEEEEECCCCC-EEEE
Confidence            45 4667778888899999998753210                             001345789999999954 4443


Q ss_pred             EecCCcEEEEeCCCCeeeEeecc----CCCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEecCCCCCccceEee
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSFD---------RSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~  351 (502)
                       . ++.|.+||..+++.......    ....+..+++.|+| +++++....         ....+|.+............
T Consensus        71 -~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~  147 (297)
T 3g4e_A           71 -I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ  147 (297)
T ss_dssp             -E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE
T ss_pred             -E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec
Confidence             4 56899999988865433221    12357889999999 665544321         23455555433333323444


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECC--CCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIR--TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ......++|+|++..++++.+..+.|..|++.  ++...    .......+..+......+++.++| ++.++....+.|
T Consensus       148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v  222 (297)
T 3g4e_A          148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRV  222 (297)
T ss_dssp             ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE----EEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEE
T ss_pred             cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc----CcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEE
Confidence            45678899999987666777778999999974  32100    001122233344567899999998 788887778889


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEc-CCCCcEEEEEeCC
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK  471 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~ll~sg~~d  471 (502)
                      .+||..+++.  +..+..+...+++++|. |++..|+++....
T Consensus       223 ~~~d~~tG~~--~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          223 IRLDPVTGKR--LQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEECTTTCCE--EEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEcCCCceE--EEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            9999988773  44445555679999998 8888666666543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.41  E-value=1.8e-11  Score=114.11  Aligned_cols=188  Identities=15%  Similarity=0.106  Sum_probs=141.7

Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEeeccCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec--CCee
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVE  356 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~v~  356 (502)
                      ++|++++.++.|.+||..+|+.+.++..+. ..+.++.+.|+| ++|+  +.++.|..||. +++..- .+...  ..+.
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W-~~~~~~~~~~~   80 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELW-NIAAPAGCEMQ   80 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEE-EEECCTTCEEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEE-EEcCCCCcccc
Confidence            689999999999999999999999998765 578999999999 7777  45788999998 555332 23222  4678


Q ss_pred             EEEeCCCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCccceEEec------cCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          357 SLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ++.+.+++. ++++.+. ++.|..++. .+         +.++.+..      +......+++.+++ +++++.+.++.|
T Consensus        81 ~~~~~~dG~-~lv~~~~~~~~v~~vd~-~G---------k~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v  148 (276)
T 3no2_A           81 TARILPDGN-ALVAWCGHPSTILEVNM-KG---------EVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEV  148 (276)
T ss_dssp             EEEECTTSC-EEEEEESTTEEEEEECT-TS---------CEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEE
T ss_pred             ccEECCCCC-EEEEecCCCCEEEEEeC-CC---------CEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEE
Confidence            889999876 6776666 777887775 33         44444432      22245566788888 899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .+||.. ++  .+..+... ..+.++.+.+++. ++++++.+++|..+|..+++.+.+.-
T Consensus       149 ~~~d~~-G~--~~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          149 REIAPN-GQ--LLNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEECTT-SC--EEEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEECCC-CC--EEEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            999998 77  34454433 3456778899998 57777778899999999898876654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=9.9e-12  Score=120.28  Aligned_cols=172  Identities=14%  Similarity=0.109  Sum_probs=129.5

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe-----------eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~i  336 (502)
                      .++.|++++. ..+|++|+.+ .+++|++...+           ..... .+.. |+.|+|  ++ .+|+++ .++.|++
T Consensus        39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~-~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HG-DQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ET-TEEEEE-ESSEEEE
T ss_pred             cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CC-CEEEEE-cCCcEEE
Confidence            6899999999 4588888887 46669875433           11222 3566 999999  66 788888 8899999


Q ss_pred             EecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          337 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       337 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      ||+++.........+...+.++.+.+.   .+++++.+|.|.+||+...         ....    +...|+|++|+|.|
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~---------~~~~----~~~~Vs~v~WSpkG  174 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTK---------STKQ----LAQNVTSFDVTNSQ  174 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTC---------CEEE----EEESEEEEEECSSE
T ss_pred             EEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCC---------cccc----ccCCceEEEEcCCc
Confidence            999987755545566777888887763   2888899999999999876         2221    44689999999976


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCeeEEEEe------c---CCCCcEEEEEEcCCCCcEEE
Q 010748          417 PNLLATGSTDKMVKLWDLSNNQPSCIASR------N---PKAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~~~~~~~------~---~~~~~v~~~~~spd~~~ll~  466 (502)
                         ++.|..||++++|+...........+      .   +|...|.++.|.+++.|+++
T Consensus       175 ---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          175 ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence               67899999999998877652113333      2   36788999999999987544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.37  E-value=1.1e-09  Score=102.75  Aligned_cols=229  Identities=9%  Similarity=0.027  Sum_probs=156.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .++|++.++...++.|.+|+.. +.. ..                         .....+...+.++++.++ +.++++.
T Consensus        28 d~~g~l~v~~~~~~~v~~~~~~-~~~-~~-------------------------~~~~~~~~~~~~i~~~~~-g~l~v~~   79 (300)
T 2qc5_A           28 SEDGKVWFTQHKANKISSLDQS-GRI-KE-------------------------FEVPTPDAKVMCLIVSSL-GDIWFTE   79 (300)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-SCE-EE-------------------------EECSSTTCCEEEEEECTT-SCEEEEE
T ss_pred             CCCCCEEEEcCCCCeEEEECCC-Cce-EE-------------------------EECCCCCCcceeEEECCC-CCEEEEe
Confidence            6789888887778999999876 221 10                         001123456889999988 4566666


Q ss_pred             ecCCcEEEEeCCCCeeeE-eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe-ecCCeeEEEeCCC
Q 010748          286 SADKQVKIWDVAAGKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPH  363 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~  363 (502)
                      ..++.|..||.. ++... .+......+.++++.+++ .++++...++.|..++.. +........ ....+..++++++
T Consensus        80 ~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           80 NGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            667889999987 55432 223244678999999988 777777668899999987 333221111 2356889999997


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      +. ++++...++.|..|+. .+.        ........+...+.++++.+++ .+.++....+.|.+|+. ++... ..
T Consensus       157 g~-l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-~~  223 (300)
T 2qc5_A          157 NA-LWFTENQNNSIGRITN-TGK--------LEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEIS-EY  223 (300)
T ss_dssp             SS-EEEEETTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-EE
T ss_pred             CC-EEEEecCCCeEEEECC-CCc--------EEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEE-EE
Confidence            65 5666666788999998 331        1222223344568899999987 77777666778999998 44422 22


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      ....+...+.++++++++. ++++...++.|.+|+.
T Consensus       224 ~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          224 DIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITN  258 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECT
T ss_pred             ECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECC
Confidence            3334456789999999998 5666656789999998

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=7.6e-11  Score=114.07  Aligned_cols=175  Identities=13%  Similarity=0.131  Sum_probs=125.7

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++...++++|+.+ .+.||++........                ......... ....+.. |+.|+|  + +++|+++
T Consensus        46 s~~~gll~a~~~~-~l~v~~~~~l~~~~~----------------~~~~~~~~~-~~~~lp~-V~~l~f--d-~~~L~v~  103 (388)
T 1xip_A           46 SNSKSLFVAASGS-KAVVGELQLLRDHIT----------------SDSTPLTFK-WEKEIPD-VIFVCF--H-GDQVLVS  103 (388)
T ss_dssp             ETTTTEEEEEETT-EEEEEEHHHHHHHHH----------------SSSCCCCCS-EEEECTT-EEEEEE--E-TTEEEEE
T ss_pred             cCCCCEEEEeCCC-EEEEEEhhHhhhhhc----------------cccccccce-EEeeCCC-eeEEEE--C-CCEEEEE
Confidence            6788899999887 455699754221000                000000110 1123556 999999  5 5688888


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                       .++.|++||+.+.........|...+.++.+.+.   .+++++.||.|.+||+......    .+...|+|++|+|.| 
T Consensus       104 -~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~----~~~~~Vs~v~WSpkG-  174 (388)
T 1xip_A          104 -TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTK----QLAQNVTSFDVTNSQ-  174 (388)
T ss_dssp             -ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEE----EEEESEEEEEECSSE-
T ss_pred             -cCCcEEEEEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCccc----cccCCceEEEEcCCc-
Confidence             8899999999877666666677888988887754   3888999999999999976643    255689999999976 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCcc--ceEE------e---ccCCCeeEEEEcCCCCCEEEEE
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS--SFTL------H---AHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~--~~~~------~---~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                        +++|..||.+++|+....         ..  ...+      .   +|...|.+|.|.+++ .++++-
T Consensus       175 --~~vg~~dg~i~~~~~~~~---------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~y  231 (388)
T 1xip_A          175 --LAVLLKDRSFQSFAWRNG---------EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAVF  231 (388)
T ss_dssp             --EEEEETTSCEEEEEEETT---------EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred             --eEEEEcCCcEEEEcCCCc---------cccccceecCCcccccccCCCeeEEEEEEecCC-eEEEEE
Confidence              678999999999988764         21  3334      2   378899999999987 666663

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.36  E-value=1.6e-10  Score=113.41  Aligned_cols=293  Identities=12%  Similarity=0.076  Sum_probs=177.1

Q ss_pred             CCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----------CC
Q 010748          149 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------ME  218 (502)
Q Consensus       149 p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~----------~d  218 (502)
                      |+++.+.++........-.|++++....     .+...+.+...| .+.+       +|+|++|+++.          .+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~-----~vv~~I~vG~~P-gia~-------SpDgk~lyVan~~~~~~~~G~~~  148 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG-----RILGMTDGGFLP-HPVA-------AEDGSFFAQASTVFERIARGKRT  148 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT-----EEEEEEEECSSC-EEEE-------CTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC-----EEEEEEECCCCC-ceEE-------CCCCCEEEEEeccccccccCCCC
Confidence            5566665555321000037777776643     233445555566 5555       89999998886          36


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec--CCcEEEEeC
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWDV  296 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--dg~v~vwd~  296 (502)
                      +.|.++|..+......+.+-+.               .    .+ ........+.|+|+++ +|+.+..  +++|.+.|+
T Consensus       149 ~~VsviD~~t~~vv~~I~v~g~---------------~----r~-~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~  207 (426)
T 3c75_H          149 DYVEVFDPVTFLPIADIELPDA---------------P----RF-LVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDL  207 (426)
T ss_dssp             EEEEEECTTTCCEEEEEEETTC---------------C----CC-CBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCc---------------c----cc-ccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEEC
Confidence            7899999987554333221100               0    00 0112345789999955 6666553  688999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc---eEeec-CC-eeEEEeCCCCCCEEEEE
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAVA-AD-VESLAWDPHAEHSFVVS  371 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~-~~-v~~v~~~~~~~~~~~~~  371 (502)
                      .+++.+.++..- .   +....|.+...+++.+.||.+.+.++.+.+....   .+... .+ ...+.+.+++.. ++..
T Consensus       208 ~t~kvv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~-~~~~  282 (426)
T 3c75_H          208 EGKTFDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR-LVWP  282 (426)
T ss_dssp             TTTEEEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE-EEEE
T ss_pred             CCCeEEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE-EEEE
Confidence            999998888631 1   1334455556777888899888888844433211   01111 11 123467887764 4444


Q ss_pred             eCCCcEEEEECCCCCCCCCCCCCccceEEe--------ccCCCeeEEEEcCCCCCEEEEEe---------CCCcEEEEEC
Q 010748          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--------AHDKAVCTISYNPLVPNLLATGS---------TDKMVKLWDL  434 (502)
Q Consensus       372 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~~l~t~s---------~dg~i~vwd~  434 (502)
                      +..+.|.+.|+.......     ...+.+.        ........++++|++.+++++..         ..+.|.++|+
T Consensus       283 s~~g~V~ViD~~~~~~~v-----~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~  357 (426)
T 3c75_H          283 TYTGKIFQADLTAEGATF-----RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA  357 (426)
T ss_dssp             BTTSEEEEEEECSSCEEE-----CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             eCCCcEEEEeccCCceEE-----eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence            567899999986541100     0001110        01122234689998845555433         1357999999


Q ss_pred             CCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCcccccc
Q 010748          435 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       435 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~-~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+.+........   ....++.|+|+++.+++++. .++.|.|+|+.+++.++++
T Consensus       358 ~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          358 ETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            998843333222   34789999999983455555 6899999999999998775

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.34  E-value=4.9e-10  Score=106.16  Aligned_cols=243  Identities=10%  Similarity=0.113  Sum_probs=151.0

Q ss_pred             ccccccccCCCceEEE-------EEecCCcceeEEEEEecCCCCCCCeeeeec---cccCCCcceeeeecCCCCCCCC-C
Q 010748          141 DLEDMTINPNDAVIVC-------ARNEDDVSHLEVYILEESDGGDPNLYVHHH---IIIPAFPLCMAWLDCPLKDREK-G  209 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~-------~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~s~~-~  209 (502)
                      ...++.|.|+++++++       +...+     .|+.|+...+   .+.....   ......|.++.+       +++ |
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~-----~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~-------~~~~g   83 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAG-----EILRIDLKTG---KKTVICKPEVNGYGGIPAGCQC-------DRDAN   83 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECC-----EEEEECTTTC---CEEEEECCEETTEECCEEEEEE-------CSSSS
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCC-----EEEEEeCCCC---cEEEEEecccCCCCCCCceEEE-------ecCCC
Confidence            4567889999988887       45554     6777775443   2221111   001234555555       677 6


Q ss_pred             CEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC-
Q 010748          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD-  288 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d-  288 (502)
                      +++++.. .+.|.+|+.+ +... ... ..                    .....+...+.++++.+++ +++++...+ 
T Consensus        84 ~l~v~~~-~~~l~~~d~~-g~~~-~~~-~~--------------------~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~  138 (314)
T 1pjx_A           84 QLFVADM-RLGLLVVQTD-GTFE-EIA-KK--------------------DSEGRRMQGCNDCAFDYEG-NLWITAPAGE  138 (314)
T ss_dssp             EEEEEET-TTEEEEEETT-SCEE-ECC-SB--------------------CTTSCBCBCCCEEEECTTS-CEEEEECBCB
T ss_pred             cEEEEEC-CCCEEEEeCC-CCEE-EEE-ec--------------------cCCCccccCCcCEEECCCC-CEEEEecCcc
Confidence            6555554 4478889876 3211 000 00                    0001123468899999984 566666554 


Q ss_pred             --------------CcEEEEeCCCCeeeEeeccCCCCeEEEEEc----CCCCcEEEEEeCCCcEEEEecC-CCCCcc--c
Q 010748          289 --------------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWN----HHSPQILLSGSFDRSVVMKDAR-ISTHSG--F  347 (502)
Q Consensus       289 --------------g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~----~~~~~~l~s~s~dg~i~iwd~~-~~~~~~--~  347 (502)
                                    +.|..|+.. ++..... .+......++|+    |++..++++...++.|.+|++. .+....  .
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~  216 (314)
T 1pjx_A          139 VAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV  216 (314)
T ss_dssp             CTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred             cccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence                          567778765 5543332 234457889999    9883344555568999999986 222111  1


Q ss_pred             eEeec----CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC-EEEE
Q 010748          348 KWAVA----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLAT  422 (502)
Q Consensus       348 ~~~~~----~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t  422 (502)
                      .....    ..+..+++++++. ++++...++.|.+||..++         ..+..+..+...+.+++|+|++ + ++++
T Consensus       217 ~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~i~~~~dg-~~l~v~  285 (314)
T 1pjx_A          217 WGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGG---------QPKMRIRCPFEKPSNLHFKPQT-KTIFVT  285 (314)
T ss_dssp             EEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCB---------SCSEEEECSSSCEEEEEECTTS-SEEEEE
T ss_pred             EEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCC---------cEeEEEeCCCCCceeEEECCCC-CEEEEE
Confidence            11111    4578899999764 6666667889999998755         3445556666789999999988 6 5556


Q ss_pred             EeCCCcEEEEECCC
Q 010748          423 GSTDKMVKLWDLSN  436 (502)
Q Consensus       423 ~s~dg~i~vwd~~~  436 (502)
                      ...++.|..|++..
T Consensus       286 ~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          286 EHENNAVWKFEWQR  299 (314)
T ss_dssp             ETTTTEEEEEECSS
T ss_pred             eCCCCeEEEEeCCC
Confidence            66678899999865

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.34  E-value=2.4e-10  Score=122.12  Aligned_cols=249  Identities=12%  Similarity=0.064  Sum_probs=154.9

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCC-cceeeeecCCCCCCCCCCEEEEecCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF-PLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~la~g~~d  218 (502)
                      ..+..+.|||+|++||.+...+......||+++...+   .....+   ++.. ...+.|       +|+ +.|+.++.+
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg---~~~~~~---~~~~~~~~~~w-------spD-~~l~~~~~~  228 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG---KPLADE---LKWVKFSGLAW-------LGN-DALLYSRFA  228 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC---CEEEEE---EEEEESCCCEE-------STT-SEEEEEECC
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---CCCCcc---CCCceeccEEE-------ECC-CEEEEEEec
Confidence            4678899999999999987664332356777776665   332111   1110 123444       899 999888776


Q ss_pred             Cc--------------EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          219 PA--------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       219 g~--------------I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +.              |++|++.+.....                       ........|...+..+.|+|+|+ +|+.
T Consensus       229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-----------------------~lv~~~~~~~~~~~~~~~SpDG~-~l~~  284 (741)
T 1yr2_A          229 EPKEGQAFQALNYNQTVWLHRLGTPQSAD-----------------------QPVFATPELPKRGHGASVSSDGR-WVVI  284 (741)
T ss_dssp             CC--------CCCCCEEEEEETTSCGGGC-----------------------EEEECCTTCTTCEEEEEECTTSC-EEEE
T ss_pred             CcccccccccCCCCCEEEEEECCCCchhC-----------------------EEEeccCCCCeEEEEEEECCCCC-EEEE
Confidence            54              8888886432111                       11111123444588999999965 5655


Q ss_pred             EecC-----CcEEEEeCCCC--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEecCCCC-CccceEe-e
Q 010748          285 ASAD-----KQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF----DRSVVMKDARIST-HSGFKWA-V  351 (502)
Q Consensus       285 gs~d-----g~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~-~  351 (502)
                      .+.+     ..|++||+.++  ++...+..+...+.... +|++ ..|+..+.    ++.|.+|++.++. ....... .
T Consensus       285 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~  362 (741)
T 1yr2_A          285 TSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES  362 (741)
T ss_dssp             EEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC
T ss_pred             EEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC
Confidence            5544     38999999877  31455555555555554 4777 55555554    3459999988752 2122222 2


Q ss_pred             cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-cCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010748          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                      ...+..++|.  +..++++...++..++|.+...        ......+.. +.+.+..+.++|++..++++.+.   .+
T Consensus       363 ~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~--------g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  432 (741)
T 1yr2_A          363 KDNLESVGIA--GNRLFASYIHDAKSQVLAFDLD--------GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA  432 (741)
T ss_dssp             SSEEEEEEEE--BTEEEEEEEETTEEEEEEEETT--------SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred             CCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC--------CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence            3346677776  3557888888998777765422        133444443 35678899999988556555443   47


Q ss_pred             cEEEEECCCCC
Q 010748          428 MVKLWDLSNNQ  438 (502)
Q Consensus       428 ~i~vwd~~~~~  438 (502)
                      +|++||+.+++
T Consensus       433 ~i~~~d~~tg~  443 (741)
T 1yr2_A          433 TVLALDPATAK  443 (741)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            79999998876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=1.6e-10  Score=122.42  Aligned_cols=236  Identities=15%  Similarity=0.100  Sum_probs=148.5

Q ss_pred             CCCCCEEEEe-----cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748          206 REKGNFMAVG-----SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       206 s~~~~~la~g-----~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      ||+|++||.+     +....|+|||+.+++.+..                          .  .+......++|+ ++ .
T Consensus       137 SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--------------------------~--~~~~k~~~~~Ws-Dg-~  186 (693)
T 3iuj_A          137 SRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--------------------------P--LKDVKFSGISWL-GN-E  186 (693)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--------------------------E--EEEEESCCCEEE-TT-T
T ss_pred             CCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--------------------------c--cCCceeccEEEe-CC-C
Confidence            8999999953     3336799999987543211                          0  011113578899 85 4


Q ss_pred             EEEEEecCC-------------cEEEEeCCCCe----eeEeecc-CCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEec
Q 010748          281 ILASASADK-------------QVKIWDVAAGK----CNLTLEH-HTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDA  339 (502)
Q Consensus       281 ~l~sgs~dg-------------~v~vwd~~~~~----~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~---dg~i~iwd~  339 (502)
                      .|+.++.+.             .|++|++.++.    ++..... |...+.++.|+|++..++++.+.   .+.|.++|+
T Consensus       187 ~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  266 (693)
T 3iuj_A          187 GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDL  266 (693)
T ss_dssp             EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred             EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence            666666664             39999998764    3333344 55567899999999544455443   258999999


Q ss_pred             CCCCC-ccceEeecCCeeEEEeCCCCCCEEEEEeCC---CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          340 RISTH-SGFKWAVAADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       340 ~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      .++.. .............. |++++..+++.+..+   +.|..+++.++.       ......+..|...+.  .|+++
T Consensus       267 ~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-------~~~~~~l~~~~~~~~--~~s~~  336 (693)
T 3iuj_A          267 SQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-------PAHWRDLIPERQQVL--TVHSG  336 (693)
T ss_dssp             TSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC-------GGGCEEEECCCSSCE--EEEEE
T ss_pred             CCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC-------ccccEEEecCCCCEE--EEEEE
Confidence            87642 22233333344444 666667666666544   679999998752       122345666666555  88888


Q ss_pred             CCCEEEEEeCCC--cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCc
Q 010748          416 VPNLLATGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d---g~i~vwd~~~~~  483 (502)
                      +..++++...++  .|++|++..+.. ....+ ...+.+..+.++|++..++++.++.   +.|..||+.+++
T Consensus       337 g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          337 SGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            744444444555  588999875542 22222 2446688888899988655554432   789999997765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.29  E-value=2.1e-09  Score=102.70  Aligned_cols=223  Identities=12%  Similarity=0.057  Sum_probs=140.6

Q ss_pred             CCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|+ +.+++++...+.|.+|+..+....                          .  + .+...+.+++|++++ .++++
T Consensus        57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------------------------~--~-~~~~~v~~i~~~~dg-~l~v~  106 (326)
T 2ghs_A           57 DPASGTAWWFNILERELHELHLASGRKT--------------------------V--H-ALPFMGSALAKISDS-KQLIA  106 (326)
T ss_dssp             ETTTTEEEEEEGGGTEEEEEETTTTEEE--------------------------E--E-ECSSCEEEEEEEETT-EEEEE
T ss_pred             eCCCCEEEEEECCCCEEEEEECCCCcEE--------------------------E--E-ECCCcceEEEEeCCC-eEEEE
Confidence            565 667777777899999998642110                          0  0 123568999999984 45554


Q ss_pred             EecCCcEEEEeCCCCeeeEeecc----CCCCeEEEEEcCCCCcEEEEEeC------CCcEEEEecCCCCCccceEeecCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~  354 (502)
                       +.+ .|.+||..+++.......    ....+..+.++|++ +++++...      .+.|..++  .++. .........
T Consensus       107 -~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~  180 (326)
T 2ghs_A          107 -SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISI  180 (326)
T ss_dssp             -ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESS
T ss_pred             -ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcc
Confidence             444 499999988875432221    12358899999999 66555432      24455555  3322 222233345


Q ss_pred             eeEEEeCCCCCCEEEEEeCCCcEEEEECC--CC-CCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIR--TA-KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~--~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      ...++|+|++..++++.+.++.|.+|++.  ++ ....    ...+..+........++++.+++ .+.++....+.|.+
T Consensus       181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~  255 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDR  255 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEE
T ss_pred             cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEE
Confidence            77899999887555666677899999986  32 1100    01122222234567889999988 77777666788999


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEEEc-CCCCcEEEEEeCCC
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSKG  472 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~ll~sg~~dg  472 (502)
                      |+. +++  .+..+..+...+++++|+ |++..++++....+
T Consensus       256 ~d~-~g~--~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          256 YDT-DGN--HIARYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             ECT-TCC--EEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             ECC-CCC--EEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            998 454  233444455679999998 88876556555543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.28  E-value=1.1e-09  Score=115.94  Aligned_cols=253  Identities=12%  Similarity=0.106  Sum_probs=158.3

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCC-cceeeeecCCCCCCCCCCEEEEec
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF-PLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      +...+..+.|||+|++||.+...+..-...||+++...+   .....+   ++.. ...+.|       + ||+.|+.++
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg---~~~~~~---~~~~k~~~~~W-------s-Dg~~l~y~~  192 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK---QPLETP---LKDVKFSGISW-------L-GNEGFFYSS  192 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC---SEEEEE---EEEEESCCCEE-------E-TTTEEEEEE
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC---CCCccc---cCCceeccEEE-------e-CCCEEEEEE
Confidence            445678889999999999877554332457777776655   322111   1111 123344       8 999999888


Q ss_pred             CCCc-------------EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccC-cccceeeEEeccCCCcEE
Q 010748          217 MEPA-------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       217 ~dg~-------------I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l  282 (502)
                      .+..             |++|++.+.....                       ........ |...+.++.|+|+++.++
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-----------------------~~v~~~~~~~~~~~~~~~~SpDg~~l~  249 (693)
T 3iuj_A          193 YDKPDGSELSARTDQHKVYFHRLGTAQEDD-----------------------RLVFGAIPAQHHRYVGATVTEDDRFLL  249 (693)
T ss_dssp             SSCCC-------CCCCEEEEEETTSCGGGC-----------------------EEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred             ecCcccccccccCCCcEEEEEECCCCcccc-----------------------eEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence            7743             8889886532111                       11112223 445578899999976555


Q ss_pred             EEEec---CCcEEEEeCCCCe-eeEeeccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCc--cceEeecC
Q 010748          283 ASASA---DKQVKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHS--GFKWAVAA  353 (502)
Q Consensus       283 ~sgs~---dg~v~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~--~~~~~~~~  353 (502)
                      ++.+.   ...|++||+.++. ....+..+....... |++++..+++++..+   +.|..+++.++...  .....+..
T Consensus       250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  328 (693)
T 3iuj_A          250 ISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ  328 (693)
T ss_dssp             EEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred             EEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence            55543   2589999998763 445555566666555 666664666666554   67999999876541  22344444


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEe-ccCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010748          354 DVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                      .+.  .|++++..++++...+|  .|++|++...          ....+. ...+.+..+.+++++..++++.+.   -+
T Consensus       329 ~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~----------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~  396 (693)
T 3iuj_A          329 QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK----------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPP  396 (693)
T ss_dssp             SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC----------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCC
T ss_pred             CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC----------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCC
Confidence            444  78888776666666666  5888887643          233333 234567778888887566665543   27


Q ss_pred             cEEEEECCCCCee
Q 010748          428 MVKLWDLSNNQPS  440 (502)
Q Consensus       428 ~i~vwd~~~~~~~  440 (502)
                      .|..||+.+++..
T Consensus       397 ~l~~~d~~~g~~~  409 (693)
T 3iuj_A          397 TLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEEECTTTCCEE
T ss_pred             EEEEEECCCCeEE
Confidence            8999999887643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=3.9e-10  Score=108.75  Aligned_cols=282  Identities=13%  Similarity=0.055  Sum_probs=166.3

Q ss_pred             ccccccccCCCceEEEEEe-cCCcceeEEEEEecCCCCCCCeeeeec-----cccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          141 DLEDMTINPNDAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHH-----IIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      ....++++|+|+++++... .+..  ..||.++  .+   .+...-.     ...-..|.++++       +++++++++
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~--~~l~~~~--~g---~~~~~p~~~~~~~~~~~~p~gv~~-------d~~g~L~v~   83 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPE--MQVAELT--QD---GLIPFPPQSGNAIITFDTVLGIKS-------DGNGIVWML   83 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCS--CSEEEEE--TT---EEEESCCCCSSCCCCCSCEEEEEE-------CSSSEEEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCc--eEEEEEC--CC---CeecCCCcccCcccceeEeeEEEE-------cCCCcEEEE
Confidence            5678999999999888642 2211  5677776  22   2221100     000123444444       778887776


Q ss_pred             ecC-----CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe---
Q 010748          215 GSM-----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS---  286 (502)
Q Consensus       215 g~~-----dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs---  286 (502)
                      -..     .+.|.+||+.++..+..+. +.                    .....+...+..+++.++++.++++.+   
T Consensus        84 D~g~~~~~~~~i~~~d~~tg~~~~~~~-~~--------------------~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           84 DNGNQSKSVPKLVAWDTLNNQLSRVIY-LP--------------------PPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             ECHHHHTSCCEEEEEETTTTEEEEEEE-CC--------------------TTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             cCCCCcCCCCeEEEEECCCCeEEEEEE-CC--------------------hhhcccccccceEEEecCCCEEEEEcCccC
Confidence            543     5789999987644222110 00                    000123345789999986565666665   


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeE-EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      .++.|.+||+.+++..+.+.+|..... ...+.+++ ..+.+.+.++.+..|.              ..+..++|+|++.
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~  207 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH--------------LGVNGIVLDAENE  207 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT-EECBEECTTSCEECCC--------------CCEEEEEECTTSC
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECC-EEEEeccCCCceecee--------------cccceeEeccCCC
Confidence            688999999998887777765432111 13334455 5666677777765543              2357799999876


Q ss_pred             CEEEEEeCCC-cEEEEECCCCCCCCCCCCCc--cceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          366 HSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQ--SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       366 ~~~~~~~~dg-~v~i~d~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                       .++++...+ .|..++........ .....  ......++......+++++++ .++++....+.|.+||..+++...+
T Consensus       208 -~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~  284 (343)
T 2qe8_A          208 -WLYLSPMHSTSMYRIKSADLSNLQ-LTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLL  284 (343)
T ss_dssp             -EEEEEESSCSEEEEEEHHHHTCTT-CCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             -EEEEEeCCCCeEEEEEHHHhcCCC-CChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEE
Confidence             555555444 66666542110000 00000  011222445567789999987 8888888899999999855553333


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vw  477 (502)
                      .. ..+...+.+++|.+++. ++++.+..+.+.+|
T Consensus       285 ~~-~~~~~~p~~va~~~~g~-l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          285 VT-DEKLSWTDSFNFGSDGY-LYFDCNQLHHSAPL  317 (343)
T ss_dssp             EE-CGGGSCEEEEEECTTSC-EEEEECCGGGSGGG
T ss_pred             EE-CCceecCCeeEECCCCc-EEEEeCcccccccc
Confidence            32 22345689999999987 67776655444333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=4.5e-09  Score=103.67  Aligned_cols=239  Identities=11%  Similarity=0.055  Sum_probs=152.0

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      .....++|+|+++++++....+     .|+.++....   .+......  ...|. ++|       ++++++|+++..++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~-----~I~~id~~~g---~~~~~~~~--~~~~~-ia~-------~~~g~~l~~~d~~~  192 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDP-----RVRLISVDDN---KVTTVHPG--FKGGK-PAV-------TKDKQRVYSIGWEG  192 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTT-----EEEEEETTTT---EEEEEEET--CCBCB-CEE-------CTTSSEEEEEBSST
T ss_pred             CCceEEEEeCCCCEEEEecCCC-----cEEEEECCCC---EEEEeecc--CCCCc-eeE-------ecCCCcEEEEecCC
Confidence            3567889999999777766444     6777776544   33221111  11222 444       78999998888766


Q ss_pred             --cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          220 --AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       220 --~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                        .|.+|+........   .++                    .....+...+.+++++|+++. |+.+..++.|+.||..
T Consensus       193 ~~~I~~~d~~~~~~~~---~~g--------------------~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~  248 (409)
T 3hrp_A          193 THTVYVYMKASGWAPT---RIG--------------------QLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVK  248 (409)
T ss_dssp             TCEEEEEEGGGTTCEE---EEE--------------------ECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETT
T ss_pred             CceEEEEEcCCCceeE---Eee--------------------eccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECC
Confidence              67777764321100   000                    000113456788999995454 4446778899999998


Q ss_pred             CCeeeEe----eccCCCCe-E-EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee---------------cCCee
Q 010748          298 AGKCNLT----LEHHTDKV-Q-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---------------AADVE  356 (502)
Q Consensus       298 ~~~~~~~----~~~h~~~v-~-~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------------~~~v~  356 (502)
                      ++.....    ..++...- . .++|+|++..++++-..++.|+.|+....  .......               -....
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~  326 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN  326 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence            7754322    22222222 3 99999965477777778899999987643  1112221               13478


Q ss_pred             EEEeCCCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCccceEEecc---------------CCCeeEEEEcCCCCCEE
Q 010748          357 SLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------DKAVCTISYNPLVPNLL  420 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~sp~~~~~l  420 (502)
                      .++++|++. ++++-+ .++.|+.|++.++          .+..+.++               -.....+++++++ .++
T Consensus       327 gia~d~dG~-lyvad~~~~~~I~~~~~~~G----------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~ly  394 (409)
T 3hrp_A          327 GMTVDEDGN-FYIVDGFKGYCLRKLDILDG----------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYW  394 (409)
T ss_dssp             EEEECTTCC-EEEEETTTTCEEEEEETTTT----------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEE
T ss_pred             EEEEeCCCC-EEEEeCCCCCEEEEEECCCC----------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEE
Confidence            899999875 677777 7899999997654          23333333               2357889999986 788


Q ss_pred             EEEeCCCcEEEEEC
Q 010748          421 ATGSTDKMVKLWDL  434 (502)
Q Consensus       421 ~t~s~dg~i~vwd~  434 (502)
                      ++-..++.|+.+++
T Consensus       395 Vad~~n~~Ir~i~~  408 (409)
T 3hrp_A          395 IAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEESTTCEEEEEEE
T ss_pred             EEECCCCeEEEEEe
Confidence            88888888887764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.23  E-value=1.5e-08  Score=98.51  Aligned_cols=241  Identities=10%  Similarity=0.011  Sum_probs=147.8

Q ss_pred             cccccCCCceEEEEEecCC-----cceeEEEEEecCCCCCCCeeeeeccccC--------CCcceeeeecCCCCCCCCCC
Q 010748          144 DMTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~~-----~~~l~v~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~  210 (502)
                      .+.|+|+++.|.++.....     ...=.|.+++....   ..  -....++        ..|..+.|       +|+|+
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~---~~--~~~i~~~~~~~~~~g~~p~~~~~-------spDG~  137 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF---LP--IADIELPDAPRFDVGPYSWMNAN-------TPNNA  137 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC---cE--EEEEECCCccccccCCCccceEE-------CCCCC
Confidence            8999999999998863100     00014556665432   21  1222222        23444444       89999


Q ss_pred             EEEEecC--CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          211 FMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       211 ~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +|++++.  ++.|.++| .++......                          . ...   .|+.+.|.+...+++.+.|
T Consensus       138 ~l~v~n~~~~~~v~viD-~t~~~~~~~--------------------------i-~~~---~~~~~~~~~~~~~~~~~~d  186 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-QGGSSDDQL--------------------------L-SSP---TCYHIHPGAPSTFYLLCAQ  186 (373)
T ss_pred             EEEEEecCCCCeEEEEE-CCCCEEeEE--------------------------c-CCC---ceEEEEeCCCceEEEEcCC
Confidence            9999874  47899999 764322110                          0 011   1244556666677888899


Q ss_pred             CcEEEEeCCCCeeeEeec-----cCCCCe-EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEe-----------
Q 010748          289 KQVKIWDVAAGKCNLTLE-----HHTDKV-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWA-----------  350 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~-----~h~~~v-~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~-----------  350 (502)
                      |.+.+++. +++.+....     ....++ ....+.+++..++++ +..+.+.+.|+....... ..+.           
T Consensus       187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~  264 (373)
T 2mad_H          187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTW  264 (373)
T ss_pred             CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence            99999999 887664322     111221 234556666344444 477899999987543211 1111           


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEe---------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748          351 VAADVESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      .......+.++|++..++++..         ..+.|.++|+.+.         +.+.++.. .....++.|+|++..+++
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i~~-g~~p~~i~~s~Dg~~~l~  334 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQISL-GHDVDAISVAQDGGPDLY  334 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEEEC-CCCcCeEEECCCCCeEEE
Confidence            1233445788998775444432         1357999999886         55666643 335799999999843777


Q ss_pred             EEe-CCCcEEEEECCCCCe
Q 010748          422 TGS-TDKMVKLWDLSNNQP  439 (502)
Q Consensus       422 t~s-~dg~i~vwd~~~~~~  439 (502)
                      ++. .++.|.+||+.+++.
T Consensus       335 v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          335 ALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             EEcCCCCeEEEEECCCCCE
Confidence            776 589999999999884

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.22  E-value=4e-09  Score=101.61  Aligned_cols=259  Identities=10%  Similarity=0.066  Sum_probs=155.5

Q ss_pred             cccccCCCceEEEEEecC-----CcceeEEEEEecCCCCCCCeeeeeccccC--------CCcceeeeecCCCCCCCCCC
Q 010748          144 DMTINPNDAVIVCARNED-----DVSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~-----~~~~l~v~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~  210 (502)
                      .+.++|+++.|.++....     ....-.|.+++....   .  .-..+.++        ..|..+.+       +|+|+
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~---~--v~~~I~v~~g~r~~~g~~P~~~a~-------spDGk  149 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---L--PTADIELPDAPRFLVGTYPWMTSL-------TPDGK  149 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---C--EEEEEEETTCCCCCBSCCGGGEEE-------CTTSS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---e--EEEEEECCCccccccCCCCceEEE-------cCCCC
Confidence            389999999988876310     000115667776543   2  22223332        24555554       89999


Q ss_pred             EEEEecC--CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          211 FMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       211 ~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +|.++..  ++.|.|+|+.+...+..+.+                         .+      |..+.|.+...+++.+.|
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v-------------------------~g------~~~~~P~g~~~~~~~~~D  198 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDV-------------------------PD------CYHIFPTAPDTFFMHCRD  198 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEEC-------------------------CS------EEEEEEEETTEEEEEETT
T ss_pred             EEEEEEcCCCCeEEEEECCCCcEEEEEEC-------------------------CC------cceeecCCCceeEEECCC
Confidence            9998864  68999999986433221110                         01      112335545677788899


Q ss_pred             CcEEEEeCCC-CeeeEeeccC----CCCeE-EEEEc-CCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEe----------
Q 010748          289 KQVKIWDVAA-GKCNLTLEHH----TDKVQ-AVAWN-HHSPQILLSGSFDRSVVMKDARISTHSG-FKWA----------  350 (502)
Q Consensus       289 g~v~vwd~~~-~~~~~~~~~h----~~~v~-~l~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~----------  350 (502)
                      |++.+.++.+ ++...+...+    ..++. ...|. ++| ++++ .+.+|.|.+.|+.+..... ..+.          
T Consensus       199 G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g  276 (386)
T 3sjl_D          199 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG  276 (386)
T ss_dssp             SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             CCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceecccccccccc
Confidence            9999999976 5553322111    12221 23554 555 4444 6668999999997664321 1111          


Q ss_pred             -ecCCeeEEEeCCCCCCEEEEEeC---------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748          351 -VAADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       351 -~~~~v~~v~~~~~~~~~~~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                       .......+++++++..++++...         .+.|.++|+.+.         +.+..+... ..+.+|.+++++..+|
T Consensus       277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---------kv~~~i~vg-~~~~~lavs~D~~~~l  346 (386)
T 3sjl_D          277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEMG-HEIDSINVSQDEKPLL  346 (386)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEE-EEECEEEECSSSSCEE
T ss_pred             ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---------eEEEEEECC-CCcceEEECCCCCeEE
Confidence             13344567778877654444321         257999999987         556655532 3678999999984366


Q ss_pred             EEE-eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          421 ATG-STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       421 ~t~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      +++ ..++.|.++|..+++........+|   -..|.+++|
T Consensus       347 y~tn~~~~~VsViD~~t~k~~~~i~~~~~---p~~l~~s~d  384 (386)
T 3sjl_D          347 YALSTGDKTLYIHDAESGEELRSVNQLGH---GPQVITTAD  384 (386)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECCCCS---SCCEEEECC
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEecCCCC---CceeEECCc
Confidence            554 5589999999999985443333433   334455554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.21  E-value=4.1e-09  Score=99.27  Aligned_cols=209  Identities=9%  Similarity=0.050  Sum_probs=138.1

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      +..-.-+..|+++.+.++++....+.|..||..+++. ..+. ....+.++++++++ ++++ +. ++.|.+||..++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG-~l~v-~~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSG-GYVA-TI-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTS-SEEE-EE-TTEEEEEETTTTEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCC-CEEE-EE-CCeEEEEECCCCcE
Confidence            3345568899997677888888889999999988765 3333 45689999999999 6444 44 56899999887654


Q ss_pred             ccceEee----cCCeeEEEeCCCCCCEEEEEeCC---------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEE
Q 010748          345 SGFKWAV----AADVESLAWDPHAEHSFVVSLED---------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  411 (502)
Q Consensus       345 ~~~~~~~----~~~v~~v~~~~~~~~~~~~~~~d---------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  411 (502)
                      .......    ...+..++++|++. ++++....         ..-.+|.+...         ..+..+..+....+.++
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~---------g~~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD---------HHVKKYFDQVDISNGLD  155 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT---------SCEEEEEEEESBEEEEE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC---------CCEEEEeeccccccceE
Confidence            3211111    23478899999876 44443221         22344444322         11222333344568999


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEEC--CCCCee---EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          412 YNPLVPNLLATGSTDKMVKLWDL--SNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vwd~--~~~~~~---~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      |+|++..++++.+..+.|.+|++  .++...   ....+..+.+.+..++++++|. +.++....+.|.+||..+++.+.
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEE
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEE
Confidence            99998445566777889999997  444421   2223333446788999999997 57766677889999998888765


Q ss_pred             ccc
Q 010748          487 NRF  489 (502)
Q Consensus       487 ~~~  489 (502)
                      .+.
T Consensus       235 ~i~  237 (297)
T 3g4e_A          235 TVK  237 (297)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.19  E-value=7.4e-10  Score=106.86  Aligned_cols=267  Identities=10%  Similarity=-0.014  Sum_probs=160.8

Q ss_pred             EEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----------CCCcEEEeeCCCCCCcCcce
Q 010748          167 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------MEPAIEIWDLDVIDEVQPHV  236 (502)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~----------~dg~I~iwdl~~~~~~~~~~  236 (502)
                      .|++++....     ..-+.+.+...| .+..       +|+++++.++.          .++.|.+||+.+......+.
T Consensus        47 ~vsvID~~t~-----~v~~~i~vG~~P-~i~~-------spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           47 ENWVSCAGCG-----VTLGHSLGAFLS-LAVA-------GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEEEEETTTT-----EEEEEEEECTTC-EEEE-------CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEECCCC-----eEEEEEeCCCCC-ceEE-------CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            7778876654     233445555566 5544       89999999886          36889999998765544332


Q ss_pred             ecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec--CCcEEE--EeCCCCeeeEeeccCCCCe
Q 010748          237 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKI--WDVAAGKCNLTLEHHTDKV  312 (502)
Q Consensus       237 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--dg~v~v--wd~~~~~~~~~~~~h~~~v  312 (502)
                      +-++               .+   ..  .......++++|+++ +|+.+..  ...|.+  +|+.+   +..+.. .+. 
T Consensus       114 v~~~---------------~~---~~--~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~-  167 (368)
T 1mda_H          114 LPDA---------------PR---FS--VGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC-  167 (368)
T ss_dssp             ETTS---------------CS---CC--BSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC-
T ss_pred             CCCc---------------cc---cc--cCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc-
Confidence            2100               00   00  012356789999955 5666553  467888  99877   444431 111 


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEecCC-----CCCcc---ceEee-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECC
Q 010748          313 QAVAWNHHSPQILLSGSFDRSVVMKDARI-----STHSG---FKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  383 (502)
Q Consensus       313 ~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~---~~~~~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~  383 (502)
                        ....|.+...+++.+.||.+.+.++.+     ++...   ..+.. ..+.   . .+++.. ++..+. +.|.+.|+.
T Consensus       168 --~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~-~~~vs~-~~V~viD~~  239 (368)
T 1mda_H          168 --FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGM-LVWAVA-SSILQGDIP  239 (368)
T ss_dssp             --CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTE-EEECBS-SCCEEEECC
T ss_pred             --eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCE-EEEEcC-CEEEEEECC
Confidence              223456656777778889988888876     22211   01111 1222   3 444553 444444 899999986


Q ss_pred             CCCCCCCCCCCccceEEec----------cCCCeeEEEEcCCCCCEEEEEe---C-----CCcEEEEECCCCCeeEEEEe
Q 010748          384 TAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVPNLLATGS---T-----DKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~sp~~~~~l~t~s---~-----dg~i~vwd~~~~~~~~~~~~  445 (502)
                      ....       ..+..+..          +......+.++|++..++++..   .     .+.+.++|+.+.+.  +..+
T Consensus       240 ~~~~-------~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i  310 (368)
T 1mda_H          240 AAGA-------TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPI  310 (368)
T ss_dssp             SSCC-------EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECC
T ss_pred             CCcc-------eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--EEEE
Confidence            5310       11111100          1122223689999844444443   2     23566999999873  3333


Q ss_pred             cCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCcccccccc
Q 010748          446 NPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~ll~sg~-~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ... .....++|+|++++++++.. .++.|.|+|+.+++.+.++-.
T Consensus       311 ~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          311 SNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             ECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            322 25889999999987788877 589999999999998876653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.11  E-value=7e-08  Score=89.16  Aligned_cols=207  Identities=8%  Similarity=0.065  Sum_probs=137.6

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      ..+.+++|++.++.++++-...+.|.++++..+.....+.........+++++.+..++++-...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            45789999997566666767788999999876654333333335788999999764666666677899999987543222


Q ss_pred             ceEee-cCCeeEEEeCCCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEE
Q 010748          347 FKWAV-AADVESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       347 ~~~~~-~~~v~~v~~~~~~~~~~~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                       .... ......++++|.+..++++...  .+.|..+++...          ....+ ...-.....++++|++..++++
T Consensus       116 -~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~----------~~~~~~~~~~~~P~gia~d~~~~~lyv~  184 (267)
T 1npe_A          116 -LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT----------NRRILAQDNLGLPNGLTFDAFSSQLCWV  184 (267)
T ss_dssp             -EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC----------CCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             -EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC----------CcEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence             2221 2467899999976644454433  468888887643          11222 1223457899999987456666


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      -...+.|.++++.......+.  .. ......++..  +.+++++....+.|.++|..+++.+....
T Consensus       185 d~~~~~I~~~~~~g~~~~~~~--~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          185 DAGTHRAECLNPAQPGRRKVL--EG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             ETTTTEEEEEETTEEEEEEEE--EC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCEEEEEecCCCceEEEe--cC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            667789999999765422222  22 2334567664  44567766667899999999888776654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.09  E-value=1.7e-08  Score=95.44  Aligned_cols=223  Identities=15%  Similarity=0.103  Sum_probs=137.0

Q ss_pred             CCCCC-EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +++|+ +++++..++.|..|+... . ..                           .+..+...+.++++.+++ +++++
T Consensus        53 ~~~g~~l~~~d~~~~~i~~~~~~g-~-~~---------------------------~~~~~~~~~~gl~~d~dG-~l~v~  102 (305)
T 3dr2_A           53 WEAQRTLVWSDLVGRRVLGWREDG-T-VD---------------------------VLLDATAFTNGNAVDAQQ-RLVHC  102 (305)
T ss_dssp             EGGGTEEEEEETTTTEEEEEETTS-C-EE---------------------------EEEESCSCEEEEEECTTS-CEEEE
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCC-C-EE---------------------------EEeCCCCccceeeECCCC-CEEEE
Confidence            57887 677777889999998742 1 10                           111244568899999994 46655


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccC----CCCeEEEEEcCCCCcEEEE----EeC-------------CCcEEEEecCCCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLS----GSF-------------DRSVVMKDARIST  343 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s----~s~-------------dg~i~iwd~~~~~  343 (502)
                      ...++.|.+|+.. ++........    ...+..+.+.++| +++++    |..             .+.|..||..+++
T Consensus       103 ~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~  180 (305)
T 3dr2_A          103 EHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP  180 (305)
T ss_dssp             ETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred             ECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence            5556789999986 5533222111    2346789999999 77765    332             2567777776665


Q ss_pred             CccceEeecCCeeEEEeCCCCCCEEEEEeCC------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      .....  .......++|+|++. .++++...      +.|.+|++.....      ................+++.++| 
T Consensus       181 ~~~~~--~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l------~~~~~~~~~~~~~pdgi~~d~~G-  250 (305)
T 3dr2_A          181 LQRMA--DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGAL------HDRRHFASVPDGLPDGFCVDRGG-  250 (305)
T ss_dssp             CEEEE--EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEE------EEEEEEECCSSSCCCSEEECTTS-
T ss_pred             EEEEe--cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCc------cCCeEEEECCCCCCCeEEECCCC-
Confidence            54432  445678899999876 45555443      7899999875410      00001111123456788999988 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      ++.+ ++.+ .|.+|+.. ++.  +..+..+. .+.+++|.|++.. |..++.++ +..++
T Consensus       251 ~lwv-~~~~-gv~~~~~~-g~~--~~~~~~~~-~~~~~~f~~d~~~-L~it~~~~-l~~~~  303 (305)
T 3dr2_A          251 WLWS-SSGT-GVCVFDSD-GQL--LGHIPTPG-TASNCTFDQAQQR-LFITGGPC-LWMLP  303 (305)
T ss_dssp             CEEE-CCSS-EEEEECTT-SCE--EEEEECSS-CCCEEEECTTSCE-EEEEETTE-EEEEE
T ss_pred             CEEE-ecCC-cEEEECCC-CCE--EEEEECCC-ceeEEEEeCCCCE-EEEEcCCe-EEEEE
Confidence            6444 4444 49999985 442  33333333 4888999999885 44455543 44433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=2.8e-08  Score=97.41  Aligned_cols=242  Identities=10%  Similarity=0.065  Sum_probs=150.2

Q ss_pred             cccccCCCceEEEEEecCC-----cceeEEEEEecCCCCCCCeeeeeccccC--------CCcceeeeecCCCCCCCCCC
Q 010748          144 DMTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~~-----~~~l~v~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~  210 (502)
                      .+.++|+++.|.++.....     ...=.|.+++....   .  ....+.++        ..|..+.+       +|+|+
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~---~--vv~~I~v~g~~r~~~g~~P~~~~~-------spDGk  189 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF---L--PIADIELPDAPRFLVGTYQWMNAL-------TPDNK  189 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---C--EEEEEEETTCCCCCBSCCGGGSEE-------CTTSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC---c--EEEEEECCCccccccCCCcceEEE-------cCCCC
Confidence            6899999999988864100     00116777776654   2  22233332        23444433       89999


Q ss_pred             EEEEecC--CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          211 FMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       211 ~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +|+++..  ++.|.+.|+.+...+..+.                         . +.     +....|.+...+++.+.|
T Consensus       190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~-------------------------v-~g-----~~~~~p~g~~~~v~~~~d  238 (426)
T 3c75_H          190 NLLFYQFSPAPAVGVVDLEGKTFDRMLD-------------------------V-PD-----CYHIFPASPTVFYMNCRD  238 (426)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEE-------------------------C-CS-----EEEEEEEETTEEEEEETT
T ss_pred             EEEEEecCCCCeEEEEECCCCeEEEEEE-------------------------c-CC-----ceeeccCCCcEEEEEcCC
Confidence            9999874  5789999998643322111                         0 11     123445545577777888


Q ss_pred             CcEEEEeCCCCeeeEe----eccCCCCe-EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceE-----------ee
Q 010748          289 KQVKIWDVAAGKCNLT----LEHHTDKV-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKW-----------AV  351 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~----~~~h~~~v-~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~-----------~~  351 (502)
                      |.+.+.++.+++....    +.....++ ..+.|.+++ ..++..+..+.|.+.|+....... ..+           ..
T Consensus       239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~  317 (426)
T 3c75_H          239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR  317 (426)
T ss_dssp             SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred             CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence            8888888866655432    21112221 235678888 455555678999999986543211 011           11


Q ss_pred             cCCeeEEEeCCCCCCEEEEEe---------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748          352 AADVESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       352 ~~~v~~v~~~~~~~~~~~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ......++++|++..++++..         ..+.|.++|+.+.         +.+.++.... ...++.|+|++..++++
T Consensus       318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---------kvv~~I~vg~-~P~gia~spDg~~~lyv  387 (426)
T 3c75_H          318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---------ERINKIELGH-EIDSINVSQDAEPLLYA  387 (426)
T ss_dssp             ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEEE-EECEEEECCSSSCEEEE
T ss_pred             cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---------eEEEEEECCC-CcCeEEEccCCCEEEEE
Confidence            223334688998775555433         1357999999987         5666665332 47899999998427777


Q ss_pred             Ee-CCCcEEEEECCCCCe
Q 010748          423 GS-TDKMVKLWDLSNNQP  439 (502)
Q Consensus       423 ~s-~dg~i~vwd~~~~~~  439 (502)
                      +. .++.|.++|+.+.+.
T Consensus       388 ~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          388 LSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             EETTTTEEEEEETTTCCE
T ss_pred             EcCCCCeEEEEECCCCCE
Confidence            76 599999999999984

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.07  E-value=3.6e-08  Score=94.14  Aligned_cols=198  Identities=12%  Similarity=0.096  Sum_probs=130.3

Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (502)
                      ..+..|+|+++.++++...++.|.+||..+++.. .+. ....+.++.|++++ +++++ +.+ .|.+||..++.... .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g~~~~-~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTL-H  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEE-E
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCCcEEE-E
Confidence            4567899986777888888899999999887643 333 34679999999998 65554 444 49999987765432 1


Q ss_pred             Eee-----cCCeeEEEeCCCCCCEEEEEeC------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          349 WAV-----AADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       349 ~~~-----~~~v~~v~~~~~~~~~~~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      ...     ...+..++++|++. ++++...      .+.|..++  ++         .. ..+..+......++|+|++.
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g---------~~-~~~~~~~~~~~~i~~s~dg~  191 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KG---------KV-TKLFADISIPNSICFSPDGT  191 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TT---------EE-EEEEEEESSEEEEEECTTSC
T ss_pred             eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CC---------cE-EEeeCCCcccCCeEEcCCCC
Confidence            111     13478899999875 4444332      24566666  33         21 22222334567899999983


Q ss_pred             CEEEEEeCCCcEEEEECC--CC-Ce---eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          418 NLLATGSTDKMVKLWDLS--NN-QP---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~--~~-~~---~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .++++.+.++.|.+|++.  ++ ..   .....+....+.+..++++++|. ++++....+.|.+|+. +++.+..
T Consensus       192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~~~~  265 (326)
T 2ghs_A          192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIAR  265 (326)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEEE
T ss_pred             EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCEEEE
Confidence            344555667899999985  44 31   12333333446678999999997 5665556678999998 4554433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.05  E-value=2.7e-08  Score=93.99  Aligned_cols=225  Identities=12%  Similarity=-0.024  Sum_probs=137.0

Q ss_pred             ccccccccCCCceE-EEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          141 DLEDMTINPNDAVI-VCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l-~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+...|+|+++.| +++...+     .|+.|+.. +   .+....  .....+..+.+       +++|+++++....+
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~-----~i~~~~~~-g---~~~~~~--~~~~~~~gl~~-------d~dG~l~v~~~~~~  107 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGR-----RVLGWRED-G---TVDVLL--DATAFTNGNAV-------DAQQRLVHCEHGRR  107 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTT-----EEEEEETT-S---CEEEEE--ESCSCEEEEEE-------CTTSCEEEEETTTT
T ss_pred             CccCCeEeCCCCEEEEEECCCC-----EEEEEeCC-C---CEEEEe--CCCCccceeeE-------CCCCCEEEEECCCC
Confidence            45678999999944 4444444     67777653 2   222111  12344556665       78899777766668


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccC-cccceeeEEeccCCCcEEEE----Eec-------
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILAS----ASA-------  287 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s----gs~-------  287 (502)
                      .|.+|+.+ +. ...   +.                    ....+ ....+.++++.+++ .++++    |..       
T Consensus       108 ~v~~~~~~-g~-~~~---~~--------------------~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~  161 (305)
T 3dr2_A          108 AITRSDAD-GQ-AHL---LV--------------------GRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCP  161 (305)
T ss_dssp             EEEEECTT-SC-EEE---EE--------------------CEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCC
T ss_pred             EEEEECCC-CC-EEE---EE--------------------eccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccc
Confidence            89999875 21 110   00                    00001 12457789999995 46665    332       


Q ss_pred             ------CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEecCCCCCccc-eE--eec
Q 010748          288 ------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSGF-KW--AVA  352 (502)
Q Consensus       288 ------dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~-~~--~~~  352 (502)
                            .+.|..||..+++.....  .......++|+|++ +.|+.+...      +.|.+|++........ .+  ...
T Consensus       162 ~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~  238 (305)
T 3dr2_A          162 ADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD  238 (305)
T ss_dssp             CCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS
T ss_pred             cccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC
Confidence                  256888887677654433  34567889999999 666666554      7899999875431110 01  012


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      ..+..+++++++.  +.+++.+ .|.+|+...          ..+..+..+. .+.+++|+|++ +.|+.++.++
T Consensus       239 ~~pdgi~~d~~G~--lwv~~~~-gv~~~~~~g----------~~~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~  298 (305)
T 3dr2_A          239 GLPDGFCVDRGGW--LWSSSGT-GVCVFDSDG----------QLLGHIPTPG-TASNCTFDQAQ-QRLFITGGPC  298 (305)
T ss_dssp             SCCCSEEECTTSC--EEECCSS-EEEEECTTS----------CEEEEEECSS-CCCEEEECTTS-CEEEEEETTE
T ss_pred             CCCCeEEECCCCC--EEEecCC-cEEEECCCC----------CEEEEEECCC-ceeEEEEeCCC-CEEEEEcCCe
Confidence            3456788998765  5555544 499999842          4455555444 58899999887 6666666654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=2e-07  Score=90.50  Aligned_cols=234  Identities=18%  Similarity=0.099  Sum_probs=138.9

Q ss_pred             CCCCEEEE-ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccc-cCcccceeeEEeccCCCcEEEE
Q 010748          207 EKGNFMAV-GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKK-GSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       207 ~~~~~la~-g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +++++|++ |..++.|.|+|+.+.... +...                +........ ......-..+...|++  ++++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-p~~~----------------k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs  153 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE-PKII----------------KVIEPEEVKKVSGYSRLHTVHCGPDA--IYIS  153 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS-CEEE----------------EEECHHHHHHHHCEEEEEEEEECSSC--EEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC-ceee----------------eeechhhcccccCCCcccceeECCCe--EEEE
Confidence            77777665 557789999998643211 1000                000000000 0011134556778984  6667


Q ss_pred             EecC------CcEEEEeCCCCeeeEeeccCC---CCeEEEEEcCCCCcEEEEEe-------------------CCCcEEE
Q 010748          285 ASAD------KQVKIWDVAAGKCNLTLEHHT---DKVQAVAWNHHSPQILLSGS-------------------FDRSVVM  336 (502)
Q Consensus       285 gs~d------g~v~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~s-------------------~dg~i~i  336 (502)
                      +..+      |.|.++|..+.+.+.++....   ..-..+.|+|++ +.++++.                   ...+|.+
T Consensus       154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v  232 (462)
T 2ece_A          154 ALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF  232 (462)
T ss_dssp             EEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred             cCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence            6665      789999999999999886322   223458889999 7777774                   4789999


Q ss_pred             EecCCCCCccceEeec---CCeeEEEe--CCCCCCEEEEEe-----CCCcEEEEECCCCCCCCCCCCCccceEE--ec--
Q 010748          337 KDARISTHSGFKWAVA---ADVESLAW--DPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTL--HA--  402 (502)
Q Consensus       337 wd~~~~~~~~~~~~~~---~~v~~v~~--~~~~~~~~~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~--  402 (502)
                      ||+.+.+... .....   .....+.|  +|++...++++-     .+++|.+|....+.       ......+  ..  
T Consensus       233 ~D~~~~k~~~-tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------~~~~~vIdi~~~~  304 (462)
T 2ece_A          233 WDLRKRKRIH-SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------WNAEKVIEIPAEP  304 (462)
T ss_dssp             EETTTTEEEE-EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------EEEEEEEEECCEE
T ss_pred             EECCCCcEee-EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------eeEEEEEeCCCcc
Confidence            9999764333 23332   23445545  998875555555     67788776654321       0111111  10  


Q ss_pred             --------------cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CCeeEEEEecCC--------------CCcEE
Q 010748          403 --------------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASRNPK--------------AGAVF  453 (502)
Q Consensus       403 --------------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~-~~~~~~~~~~~~--------------~~~v~  453 (502)
                                    -......|.++|++..+.++.-..+.|.+||+.. .++..+......              .+.-.
T Consensus       305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr  384 (462)
T 2ece_A          305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQ  384 (462)
T ss_dssp             CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred             ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCC
Confidence                          0245788999999944444445578999999863 333344333221              01357


Q ss_pred             EEEEcCCCCcEEEEE
Q 010748          454 SVAFSEDSPFVLAIG  468 (502)
Q Consensus       454 ~~~~spd~~~ll~sg  468 (502)
                      .++++|||++++++.
T Consensus       385 ~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          385 MLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSSEEEEEC
T ss_pred             EEEEcCCCCEEEEEc
Confidence            899999999755544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.00  E-value=5.2e-11  Score=116.04  Aligned_cols=185  Identities=16%  Similarity=0.109  Sum_probs=103.7

Q ss_pred             CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-EeecCCee-
Q 010748          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVE-  356 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~-  356 (502)
                      +.++++++.||.|+.||..+|+.+.++..  +.+.+..+..++ .++++++.||.|+.||..+++..... ......+. 
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            34899999999999999999999988875  455555555666 67777889999999999877653211 11111110 


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      +..+. .+ ..+++++.++.|+.||..++         +.++.+..+.    ...++|.+ ..+++++.++.|+.||..+
T Consensus        86 sp~~~-~~-~~v~~g~~dg~v~a~D~~tG---------~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~t  149 (369)
T 2hz6_A           86 SPCRS-SD-GILYMGKKQDIWYVIDLLTG---------EKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKT  149 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEECCCSSS
T ss_pred             CceEe-cC-CEEEEEeCCCEEEEEECCCC---------cEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCC
Confidence            00111 22 35778888999999999987         4555555443    23456655 7888899999999999998


Q ss_pred             CCeeEEEEecCCCCcEEEEEEcCCC---CcEEEEEeCCCcEEEEECCCCccccc
Q 010748          437 NQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~---~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ++..-......    .....+.++.   . .+++++.+|.|+.||..+++.+.+
T Consensus       150 G~~~W~~~~~~----~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          150 RELRWNATYFD----YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             SSCCCEEEEEE----ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCEEEE
T ss_pred             CCEEEeEeccc----ccCccccCCccccc-eEEEECCCCEEEEEECCCCcEEEE
Confidence            87432222211    1223334431   3 366688899999999999887644

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.98  E-value=3.3e-08  Score=104.14  Aligned_cols=243  Identities=12%  Similarity=0.048  Sum_probs=145.8

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe-
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-  286 (502)
                      .+..|++++.++.|..+|..+++.+.......               ...  ........++    +. + + .++.++ 
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~---------------~~~--~~~~~~~sP~----v~-~-g-~v~vg~~  175 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA---------------DHK--RSYTITGAPR----VV-N-G-KVVIGNG  175 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCS---------------CTT--SCCBCCSCCE----EE-T-T-EEEECCB
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcC---------------CCC--CCccccCCcE----EE-C-C-EEEEEeC
Confidence            46788899999999999998876554321100               000  0000011111    11 2 3 444443 


Q ss_pred             -----cCCcEEEEeCCCCeeeEeeccCC-------------------------------CCeEEEEEcCCCCcEEEEEeC
Q 010748          287 -----ADKQVKIWDVAAGKCNLTLEHHT-------------------------------DKVQAVAWNHHSPQILLSGSF  330 (502)
Q Consensus       287 -----~dg~v~vwd~~~~~~~~~~~~h~-------------------------------~~v~~l~~~~~~~~~l~s~s~  330 (502)
                           .+|.|..||..+|+.+.++....                               .....+.+.|.. .+++.++.
T Consensus       176 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~  254 (689)
T 1yiq_A          176 GAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVG  254 (689)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECC
T ss_pred             CCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCC
Confidence                 36899999999999887764210                               011257788877 67888887


Q ss_pred             CCc-------------------EEEEecCCCCCccceEee---------cCCeeEEEeCCCCC--CEEEEEeCCCcEEEE
Q 010748          331 DRS-------------------VVMKDARISTHSGFKWAV---------AADVESLAWDPHAE--HSFVVSLEDGTIKGF  380 (502)
Q Consensus       331 dg~-------------------i~iwd~~~~~~~~~~~~~---------~~~v~~v~~~~~~~--~~~~~~~~dg~v~i~  380 (502)
                      ++.                   |..+|.++++..-.....         ...+.......++.  ..++.++.+|.++++
T Consensus       255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l  334 (689)
T 1yiq_A          255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI  334 (689)
T ss_dssp             CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence            764                   999999988754322211         11111111111221  268888999999999


Q ss_pred             ECCCCCCCCCCCCCccceEEecc----------------------------C-----------CCeeEEEEcCCCCCEEE
Q 010748          381 DIRTAKSDPDSTSQQSSFTLHAH----------------------------D-----------KAVCTISYNPLVPNLLA  421 (502)
Q Consensus       381 d~~~~~~~~~~~~~~~~~~~~~h----------------------------~-----------~~v~~l~~sp~~~~~l~  421 (502)
                      |.++++.         +......                            .           ..-..++|+|.. .+++
T Consensus       335 D~~tG~~---------l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~y  404 (689)
T 1yiq_A          335 DRATGEL---------LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVY  404 (689)
T ss_dssp             ETTTCCE---------EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEE
T ss_pred             ECCCCCE---------eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEE
Confidence            9998742         2111100                            0           011237888876 6666


Q ss_pred             EEeC---------------------------------------------CCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748          422 TGST---------------------------------------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       422 t~s~---------------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      +.+.                                             +|.|+.||+.+++.  +.....+ .++....
T Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~-~~~~~g~  481 (689)
T 1yiq_A          405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPYV-TIFNGGT  481 (689)
T ss_dssp             EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE--EEEEEES-SSCCCCE
T ss_pred             EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe--EeEccCC-CCccCcc
Confidence            6532                                             37799999999984  3333322 2233334


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +...+. ++++|+.||.|+.||..+++.+.+.-
T Consensus       482 ~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          482 LSTAGN-LVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             EEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceECCC-EEEEECCCCcEEEEECCCCccceeee
Confidence            555565 68889999999999999999986543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.98  E-value=2.1e-10  Score=111.74  Aligned_cols=203  Identities=13%  Similarity=0.064  Sum_probs=110.0

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++.+|++|+.+|.|+.||..+++.+....                           .  ..+.+..+..+ +.++++++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~---------------------------~--~~~~s~p~~~~-g~~~v~~s~   57 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK---------------------------E--DPVLQVPTHVE-EPAFLPDPN   57 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE---------------------------C--CCSCCCC------CCEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec---------------------------C--CCceecceEcC-CCEEEEeCC
Confidence            58899999999999999998765433211                           1  23444444455 447777889


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCC-eE-EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDK-VQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~-v~-~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      ||.|+.||..+|+.+..+..+... +. +..+. .+ ..+++++.++.|+.||.++++..-..... .   ...++|.+ 
T Consensus        58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~---~~~~~p~~-  130 (369)
T 2hz6_A           58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSA-F---ADSLSPST-  130 (369)
T ss_dssp             TCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------
T ss_pred             CCEEEEEECCCCceeeeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCC-C---cccccccC-
Confidence            999999999999887666533211 10 00111 23 46788888999999999988764322221 1   23455644 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC--CCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      ..+++++.++.|+.||.+++         ..++.+..+.  .....+.++.  ...+++++.+|.|+.||..+++.  +.
T Consensus       131 ~~v~~~~~dg~v~a~d~~tG---------~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~--~W  197 (369)
T 2hz6_A          131 SLLYLGRTEYTITMYDTKTR---------ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV--LW  197 (369)
T ss_dssp             --EEEEEEEEEEECCCSSSS---------SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE--EE
T ss_pred             CEEEEEecCCEEEEEECCCC---------CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE--EE
Confidence            47888888999999999987         4445443221  1223333321  14567788999999999999883  44


Q ss_pred             EecCCCCcEEE-EEEcCCC
Q 010748          444 SRNPKAGAVFS-VAFSEDS  461 (502)
Q Consensus       444 ~~~~~~~~v~~-~~~spd~  461 (502)
                      .... ..++.. ..+++++
T Consensus       198 ~~~~-~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          198 IQNY-ASPVVAFYVWQREG  215 (369)
T ss_dssp             EEEC-SSCEEEEEECTTSS
T ss_pred             EecC-CCceEEEEEecCCc
Confidence            4432 344443 4455565

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.97  E-value=8.6e-08  Score=100.74  Aligned_cols=244  Identities=11%  Similarity=0.067  Sum_probs=150.2

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee-EEeccCCCcEEEEEe
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs  286 (502)
                      .+..|++++.++.|..+|..+++.+.......               ..       .....+.+ .... + + .++.++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~---------------~~-------~~~~~~~~~p~v~-~-~-~v~v~~  181 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFE---------------GQ-------KGSLTITGAPRVF-K-G-KVIIGN  181 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTT---------------TC-------CSSCBCCSCCEEE-T-T-EEEECC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCc---------------Cc-------CcCcccccCcEEE-C-C-EEEEEe
Confidence            46788889999999999998876544321100               00       00001111 1111 2 3 455554


Q ss_pred             c------CCcEEEEeCCCCeeeEeeccCCCC--------------------------------eEEEEEcCCCCcEEEEE
Q 010748          287 A------DKQVKIWDVAAGKCNLTLEHHTDK--------------------------------VQAVAWNHHSPQILLSG  328 (502)
Q Consensus       287 ~------dg~v~vwd~~~~~~~~~~~~h~~~--------------------------------v~~l~~~~~~~~~l~s~  328 (502)
                      .      ++.|+.||..+|+.+.++......                                ...+.+.|.+ .+++.+
T Consensus       182 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~  260 (677)
T 1kb0_A          182 GGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVG  260 (677)
T ss_dssp             BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEE
T ss_pred             cccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEE
Confidence            3      689999999999998877532211                                1356788887 677777


Q ss_pred             eCCC-------------------cEEEEecCCCCCccceEee---------cCCeeEEEeCCCCC--CEEEEEeCCCcEE
Q 010748          329 SFDR-------------------SVVMKDARISTHSGFKWAV---------AADVESLAWDPHAE--HSFVVSLEDGTIK  378 (502)
Q Consensus       329 s~dg-------------------~i~iwd~~~~~~~~~~~~~---------~~~v~~v~~~~~~~--~~~~~~~~dg~v~  378 (502)
                      +.++                   .|..+|.++++..-.....         ......+....++.  ..+++++.+|.|+
T Consensus       261 ~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~  340 (677)
T 1kb0_A          261 TGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFF  340 (677)
T ss_dssp             CCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred             CCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEE
Confidence            7664                   4899999887754322111         11122222222342  4788899999999


Q ss_pred             EEECCCCCCCCCCCCCccceEEeccC-----------CC------------------------eeEEEEcCCCCCEEEEE
Q 010748          379 GFDIRTAKSDPDSTSQQSSFTLHAHD-----------KA------------------------VCTISYNPLVPNLLATG  423 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~-----------~~------------------------v~~l~~sp~~~~~l~t~  423 (502)
                      ++|..++         +.++......           .+                        -..++|+|+. .++++.
T Consensus       341 ~lD~~tG---------~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~  410 (677)
T 1kb0_A          341 VLDRTNG---------KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLP  410 (677)
T ss_dssp             EEETTTC---------CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred             EEECCCC---------CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEe
Confidence            9999987         3343332110           00                        0257888887 666665


Q ss_pred             eC-------------------------------------------CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          424 ST-------------------------------------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       424 s~-------------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ..                                           .|.|..||+.+++.  +.... +..++....+...
T Consensus       411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~-~~~~~~~g~~~~~  487 (677)
T 1kb0_A          411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA--AWSVE-HVSPWNGGTLTTA  487 (677)
T ss_dssp             EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE--EEEEE-ESSSCCCCEEEET
T ss_pred             ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE--EeecC-CCCCCcCcceEeC
Confidence            33                                           27799999999873  33332 2233444456666


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          461 SPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       461 ~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +. ++++++.+|.+++||+.+++.+.+....
T Consensus       488 g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          488 GN-VVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             TT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CC-EEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            66 5777899999999999999998765533

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.97  E-value=1.6e-08  Score=101.52  Aligned_cols=247  Identities=11%  Similarity=0.094  Sum_probs=158.8

Q ss_pred             CCCCEEEEecC-CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEe-c-cCCCcEEE
Q 010748          207 EKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-N-KEFRNILA  283 (502)
Q Consensus       207 ~~~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~-~~~~~~l~  283 (502)
                      +||++|.+... ++.|.+.|+++.+...-+.+                          ........+++ . |+++ +++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i--------------------------p~g~~phg~~~~~~p~~~-~v~  151 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI--------------------------PNAKGIHGLRPQKWPRSN-YVF  151 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--------------------------SSCCSEEEEEECCSSBCS-EEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeC--------------------------CCCCCCcceeeeecCCCc-EEE
Confidence            47888877665 46799999987554331110                          11234667777 4 7855 555


Q ss_pred             EEe------------------cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC-------------
Q 010748          284 SAS------------------ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------------  332 (502)
Q Consensus       284 sgs------------------~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-------------  332 (502)
                      +++                  .++.|.+.|..+.+.+.++.--. ....++++|++ .++++.+.+.             
T Consensus       152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~  229 (595)
T 1fwx_A          152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAE  229 (595)
T ss_dssp             EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCS
T ss_pred             EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccc
Confidence            553                  35689999999999888886322 45677899998 6676666543             


Q ss_pred             -------------------------cEEEEecCC--CCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          333 -------------------------SVVMKDARI--STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       333 -------------------------~i~iwd~~~--~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~  385 (502)
                                               .|.+.|.++  .+.............++.++|+|..+++++..+..|.++|+.+.
T Consensus       230 ~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          230 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             cceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence                                     477777776  33323345566778899999999877777788999999999854


Q ss_pred             CCC--CCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--------CeeEEEEecCCCCcE-E-
Q 010748          386 KSD--PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--------QPSCIASRNPKAGAV-F-  453 (502)
Q Consensus       386 ~~~--~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v-~-  453 (502)
                      ...  ........+.....-......++|+|+| ...++.-.|++|.+||+...        ....+..+..|..+- . 
T Consensus       310 ~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~  388 (595)
T 1fwx_A          310 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK  388 (595)
T ss_dssp             HHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred             ccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence            100  0000001121112223457889999998 77777888999999998761        112445555554332 1 


Q ss_pred             ---EEEEcCCCCcEEEEEeCC-CcE-----------EEEECCCCc
Q 010748          454 ---SVAFSEDSPFVLAIGGSK-GKL-----------EIWDTLSDA  483 (502)
Q Consensus       454 ---~~~~spd~~~ll~sg~~d-g~i-----------~vwd~~~~~  483 (502)
                         .+.++|||+|++++.... .++           .++|+..++
T Consensus       389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence               224589999866554333 344           899996554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.93  E-value=1.4e-06  Score=80.33  Aligned_cols=216  Identities=10%  Similarity=0.023  Sum_probs=130.9

Q ss_pred             CCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +++ +.++++-...+.|.+++++.... .  .                        ..........+|++.+.++.++++
T Consensus        44 d~~~~~ly~~d~~~~~I~~~~~~g~~~-~--~------------------------~~~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           44 DCVDKVVYWTDISEPSIGRASLHGGEP-T--T------------------------IIRQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             ETTTTEEEEEETTTTEEEEEESSSCCC-E--E------------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred             ecCCCEEEEEECCCCEEEEEecCCCCc-E--E------------------------EEECCCCCccEEEEEecCCeEEEE
Confidence            565 44555555678999999864211 0  0                        001112457889999875666666


Q ss_pred             EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF--DRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  362 (502)
                      -...+.|.++++........+.........++++|++..++++...  .+.|..+++..................+++++
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~  176 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC
Confidence            6677899999986443222222222567899999976355555433  46888888765332211111224578899999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      ++..++++-...+.|..+++...         .....+. .......+++.  +..++++....+.|.++|..+++.  +
T Consensus       177 ~~~~lyv~d~~~~~I~~~~~~g~---------~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~--~  242 (267)
T 1npe_A          177 FSSQLCWVDAGTHRAECLNPAQP---------GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE--M  242 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEE---------EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE--E
T ss_pred             CCCEEEEEECCCCEEEEEecCCC---------ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc--e
Confidence            87766667777889999998753         2112222 22334566654  335666655678999999988773  3


Q ss_pred             EEecCCC-CcEEEEEEcCCCC
Q 010748          443 ASRNPKA-GAVFSVAFSEDSP  462 (502)
Q Consensus       443 ~~~~~~~-~~v~~~~~spd~~  462 (502)
                      ..+.... .....+++.|++.
T Consensus       243 ~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          243 DTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEECCSSCCCCCCEEEECSCC
T ss_pred             EEEccccccccceeeecCccC
Confidence            3433222 2356777877764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.90  E-value=3.9e-08  Score=94.80  Aligned_cols=251  Identities=10%  Similarity=-0.027  Sum_probs=150.5

Q ss_pred             cccccCCCceEEEEEecC-----CcceeEEEEEecCCCCCCCeeeeeccccC--------CCcceeeeecCCCCCCCCCC
Q 010748          144 DMTINPNDAVIVCARNED-----DVSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~-----~~~~l~v~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~  210 (502)
                      .+.++|+++.|.++....     .-..=.|.+++....   .  ....+.++        ..|..+..       +|+|+
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---~--vv~~I~v~~~~~~~~g~~P~~ia~-------SpDGk  136 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---L--PIADIELPDAPRFSVGPRVHIIGN-------CASSA  136 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---C--EEEEEEETTSCSCCBSCCTTSEEE-------CTTSS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---C--EEEEEECCCccccccCCCcceEEE-------cCCCC
Confidence            689999999998887310     000116777776654   2  22333333        23555544       89999


Q ss_pred             EEEEecC--CCcEEE--eeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          211 FMAVGSM--EPAIEI--WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       211 ~la~g~~--dg~I~i--wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +|+++..  ...|.+  +|+.+   +....                         . +.     |+.+.|++...+++.+
T Consensus       137 ~lyVan~~~~~~v~V~~iD~~t---v~~i~-------------------------v-~~-----~~~~~p~g~~~~~~~~  182 (368)
T 1mda_H          137 CLLFFLFGSSAAAGLSVPGASD---DQLTK-------------------------S-AS-----CFHIHPGAAATHYLGS  182 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEE---EEEEE-------------------------C-SS-----CCCCEEEETTEEECCC
T ss_pred             EEEEEccCCCCeEEEEEEchhh---ceEEE-------------------------C-CC-----ceEEccCCCeEEEEEc
Confidence            9999875  357888  88864   11000                         0 11     1223456566777778


Q ss_pred             cCCcEEEEeCCC-----CeeeEe----eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEe------
Q 010748          287 ADKQVKIWDVAA-----GKCNLT----LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWA------  350 (502)
Q Consensus       287 ~dg~v~vwd~~~-----~~~~~~----~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~------  350 (502)
                      .||.+.+.++.+     ++.+..    +.-...+.   . .+.+ ..++..+. +.|.+.|+.+..... ..+.      
T Consensus       183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~  256 (368)
T 1mda_H          183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             CCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccc
Confidence            899998899887     443321    11122333   3 5555 34444555 999999986533111 0111      


Q ss_pred             -----ecCCeeEEEeCCCCCCEEEEEe---C-----CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          351 -----VAADVESLAWDPHAEHSFVVSL---E-----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       351 -----~~~~v~~v~~~~~~~~~~~~~~---~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                           .......++++|++..++++..   .     .+.+.++|+.+.         +.+..+.... ...+++|+|++.
T Consensus       257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---------~vv~~i~vg~-~p~gi~~s~Dg~  326 (368)
T 1mda_H          257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------QTSGPISNGH-DSDAIIAAQDGA  326 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------CEEECCEEEE-EECEEEECCSSS
T ss_pred             cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---------eEEEEEECCC-CcceEEECCCCC
Confidence                 1222233789998875554443   2     235669999987         4455554333 588999999986


Q ss_pred             CEEEEEe-CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcC
Q 010748          418 NLLATGS-TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE  459 (502)
Q Consensus       418 ~~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp  459 (502)
                      .++++.. .++.|.++|+.+.+  .+..+... .....+++.+
T Consensus       327 ~l~va~~~~~~~VsVID~~t~k--vv~~I~vg-~~P~~i~~~~  366 (368)
T 1mda_H          327 SDNYANSAGTEVLDIYDAASDQ--DQSSVELD-KGPESLSVQN  366 (368)
T ss_dssp             CEEEEEETTTTEEEEEESSSCE--EEEECCCC-SCCCEEECCC
T ss_pred             EEEEEccCCCCeEEEEECCCCc--EEEEEECC-CCCCEEEeec
Confidence            6788888 69999999999987  45555433 2344555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.89  E-value=4e-06  Score=79.38  Aligned_cols=211  Identities=12%  Similarity=0.078  Sum_probs=136.0

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCC----CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      ..+.+++|.+.++.++.+-...+.|..+++..    ......+...-.....+++.+.+.+++++-...+.|.++++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            45789999987566666667778999999876    22222233223456788998766466666677889999998754


Q ss_pred             CCccceEeecCCeeEEEeCCCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEE
Q 010748          343 THSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ...............++++|.+..++++.... +.|..+++...          ....+ ...-.....++++|.+..+.
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~----------~~~~~~~~~~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----------DIYSLVTENIQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------CEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC----------CeEEEEECCCCCceEEEEeccCCEEE
Confidence            33222222235678999998766555555443 78888887532          22222 22334678999998774666


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ++-+..+.|..+|+.......+............+++.. + +++.+-...+.|..++..+++.+..+.
T Consensus       180 ~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            666667899999998654333333322334567888853 3 467777778899999987777655443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.88  E-value=1e-06  Score=85.70  Aligned_cols=223  Identities=8%  Similarity=0.049  Sum_probs=133.0

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +..+++++.++.|..+|..+++.+......                  ...........+    ... +  ..++.++.+
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~------------------~~~~~~~~~~~~----~~~-~--~~v~~g~~~  197 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLD------------------MPSLSLRGESAP----TTA-F--GAAVVGGDN  197 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECC------------------C-----CCCCCC----EEE-T--TEEEECCTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCC------------------CCceeecCCCCc----EEE-C--CEEEEEcCC
Confidence            557888888999999999876544321110                  000000111111    222 2  367788889


Q ss_pred             CcEEEEeCCCCeeeEeeccCCCC----eEE---EEEcC--CCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEE
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDK----VQA---VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  359 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~----v~~---l~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  359 (502)
                      +.|..+|..+++.+..+......    +..   +...|  .+ ..++.++.++.+..+|.++++..- ... ......+.
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG~~~w-~~~-~~~~~~~~  274 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSGQIMW-KRE-LGSVNDFI  274 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEEEEETTTCCEEE-EEC-CCCEEEEE
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCCcEEe-ecc-CCCCCCce
Confidence            99999999999888776432110    000   00111  12 467888889999999998876432 111 12233444


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ..  + ..+++++.+|.|..+|..++         ..++.... ....+......  + ..|+.++.+|.|.++|..+++
T Consensus       275 ~~--~-~~l~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          275 VD--G-NRIYLVDQNDRVMALTIDGG---------VTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EE--T-TEEEEEETTCCEEEEETTTC---------CEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCC
T ss_pred             EE--C-CEEEEEcCCCeEEEEECCCC---------cEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCc
Confidence            43  2 36888888999999999987         55565542 22233333333  2 678889999999999999988


Q ss_pred             eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      ..  .........+.+.....++  .|..++.+|.|+.|+
T Consensus       340 ~~--~~~~~~~~~~~~~~~~~~~--~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          340 FV--AQQKVDSSGFQTEPVAADG--KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EE--EEEECCTTCBCSCCEEETT--EEEEEBTTSCEEEEE
T ss_pred             EE--EEEecCCCcceeCCEEECC--EEEEEeCCCEEEEEe
Confidence            43  3333222222221111244  367788999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.88  E-value=7.3e-08  Score=96.82  Aligned_cols=255  Identities=12%  Similarity=0.132  Sum_probs=161.0

Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchh------hhhhccccC----------Cccc-ccccccCcccceeeEEe
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKG----------KKSS-IKYKKGSHTDSVLGLAW  274 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~----------~~~~-~~~~~~~h~~~V~~l~~  274 (502)
                      +.+|+..|.++|+-+.+++.+..+.++......      ..++....+          .... ....-..|.   ..+++
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh---~~~s~   94 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH---VHMSF   94 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCC---EEEEE
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCc---cccCC
Confidence            678899999999999999888777766543322      011101000          0000 010111121   33444


Q ss_pred             ---ccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc-CCCCeEEEEE-c-CCCCcEEEEEe------------------C
Q 010748          275 ---NKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAW-N-HHSPQILLSGS------------------F  330 (502)
Q Consensus       275 ---~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~~l~s~s------------------~  330 (502)
                         .++|+.++++...++.|.+.|+.+.++...+.- ....+..+++ . |++ .++++++                  .
T Consensus        95 t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           95 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCccccccccc
Confidence               236565666666677899999999998885532 2345788887 4 888 6666664                  3


Q ss_pred             CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC------------------------------------
Q 010748          331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED------------------------------------  374 (502)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d------------------------------------  374 (502)
                      ++.+.+.|..+.+... .....+....++++|++...++++...                                    
T Consensus       174 ~~~vtvID~~t~~v~~-qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAW-QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEE-EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEE-EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4578999998765433 334444667788999877444444222                                    


Q ss_pred             -CcEEEEECCCCCCCCCCCCCcc-ceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------eEE
Q 010748          375 -GTIKGFDIRTAKSDPDSTSQQS-SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SCI  442 (502)
Q Consensus       375 -g~v~i~d~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------~~~  442 (502)
                       +.|.+.|.++..       ... +..+.. .....++.++|+|..+++++..+.+|.++|+.+.+.          ...
T Consensus       253 i~~V~VID~~~~~-------~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          253 LNGVKVVDGRKEA-------SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             ETTEEEEECSGGG-------CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             ECcEEEEeCcccC-------CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence             236666666520       022 334433 235678999999955666666789999999986421          122


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      .... -......++|+|+| +++++.-.++.|.+||+.+
T Consensus       325 ~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          325 AEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             EEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            3333 23457899999999 6788888999999999977

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.86  E-value=2.2e-06  Score=83.29  Aligned_cols=228  Identities=11%  Similarity=0.093  Sum_probs=139.3

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+..|++++.++.|..+|..+++.......                           ........... +  ..++.++.
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~---------------------------~~~~~~~p~~~-~--~~v~v~~~  151 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKV---------------------------AGEALSRPVVS-D--GLVLIHTS  151 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEEC---------------------------SSCCCSCCEEE-T--TEEEEECT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeC---------------------------CCceEcCCEEE-C--CEEEEEcC
Confidence            466788888899999999987654332110                           00001111122 2  37788889


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCe-----EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCC-----eeE
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKV-----QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VES  357 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~  357 (502)
                      ++.|..+|..+|+.+..+.......     ......  + ..+++++.++.|..+|..+++..-.. ....+     +..
T Consensus       152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~  227 (376)
T 3q7m_A          152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDR  227 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEE-ECCC---------
T ss_pred             CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCccccc
Confidence            9999999999999887775432111     111222  2 46778888999999999877643211 11110     000


Q ss_pred             ---EEeCCC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          358 ---LAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       358 ---v~~~~~-~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                         +...|- ....+++++.+|.|..+|.+++         ..++....  .....+...  + ..|+.++.++.|..+|
T Consensus       228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---------~~~w~~~~--~~~~~~~~~--~-~~l~~~~~~g~l~~~d  293 (376)
T 3q7m_A          228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---------QIMWKREL--GSVNDFIVD--G-NRIYLVDQNDRVMALT  293 (376)
T ss_dssp             --CCCCCCEEETTEEEEECTTSCEEEEETTTC---------CEEEEECC--CCEEEEEEE--T-TEEEEEETTCCEEEEE
T ss_pred             ccccCCCcEEECCEEEEEecCcEEEEEECCCC---------cEEeeccC--CCCCCceEE--C-CEEEEEcCCCeEEEEE
Confidence               001110 1236888888999999999887         45555442  234445444  3 6788888899999999


Q ss_pred             CCCCCeeEEEEec-CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          434 LSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       434 ~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..+++.  +.... .....+......  +. .|.+++.+|.|.++|..+++.+.+.
T Consensus       294 ~~tG~~--~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          294 IDGGVT--LWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             TTTCCE--EEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCCcE--EEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcEEEEE
Confidence            999884  33333 111222222232  23 4777888999999999999877543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.85  E-value=7.1e-07  Score=93.97  Aligned_cols=185  Identities=13%  Similarity=0.182  Sum_probs=117.9

Q ss_pred             eeeEEeccCCCcEEEEEecCCc-------------------EEEEeCCCCeeeEeecc--CC-------CCeEEEEEcCC
Q 010748          269 VLGLAWNKEFRNILASASADKQ-------------------VKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNHH  320 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~-------------------v~vwd~~~~~~~~~~~~--h~-------~~v~~l~~~~~  320 (502)
                      ...+++.|. ..+|+.++.++.                   |..||..+|+.+..++.  |.       ..+.......+
T Consensus       237 w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~  315 (689)
T 1yiq_A          237 WDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPID  315 (689)
T ss_dssp             CSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred             ccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccC
Confidence            346788887 457888877763                   99999999999888753  21       12222222223


Q ss_pred             C--CcEEEEEeCCCcEEEEecCCCCCccce------Eeec---------------------------------CCeeEEE
Q 010748          321 S--PQILLSGSFDRSVVMKDARISTHSGFK------WAVA---------------------------------ADVESLA  359 (502)
Q Consensus       321 ~--~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~---------------------------------~~v~~v~  359 (502)
                      +  ...++.++.+|.++++|.++++.+...      +...                                 ..-..++
T Consensus       316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a  395 (689)
T 1yiq_A          316 GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS  395 (689)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred             CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence            4  137889999999999999988764211      0000                                 0011267


Q ss_pred             eCCCCCCEEEEEeC---------------------------------------------CCcEEEEECCCCCCCCCCCCC
Q 010748          360 WDPHAEHSFVVSLE---------------------------------------------DGTIKGFDIRTAKSDPDSTSQ  394 (502)
Q Consensus       360 ~~~~~~~~~~~~~~---------------------------------------------dg~v~i~d~~~~~~~~~~~~~  394 (502)
                      ++|... ++++...                                             +|.|+.||+.++         
T Consensus       396 ~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG---------  465 (689)
T 1yiq_A          396 YNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ---------  465 (689)
T ss_dssp             EETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT---------
T ss_pred             ECCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC---------
Confidence            777655 5555422                                             377999999987         


Q ss_pred             ccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC-cEEEEEEcCCCCcEEEEE
Q 010748          395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG-AVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~v~~~~~spd~~~ll~sg  468 (502)
                      +.+++...+.. +....+...+ .++++++.||.|+.||.++++.  +..+....+ ...-+.|..+|+..+++.
T Consensus       466 ~~~W~~~~~~~-~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~--lw~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          466 QAAWEVPYVTI-FNGGTLSTAG-NLVFEGSADGRVIAYAADTGEK--LWEQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             EEEEEEEESSS-CCCCEEEETT-TEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CeEeEccCCCC-ccCccceECC-CEEEEECCCCcEEEEECCCCcc--ceeeeCCCCcccCceEEEECCEEEEEEE
Confidence            67777765543 3333455555 7899999999999999999984  444433222 113356778886444443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.83  E-value=2.3e-07  Score=88.21  Aligned_cols=219  Identities=12%  Similarity=0.071  Sum_probs=142.2

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      +..|.+|+.++.|..+|.. +.....                           ...+...+.++...++ + .|..|+.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~---------------------------~~~~~~~~~~~~~~~~-g-~l~vgt~~  156 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWR---------------------------FKTKKAIYATPIVSED-G-TIYVGSND  156 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEE---------------------------EECSSCCCSCCEECTT-S-CEEEECTT
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEE---------------------------EcCCCceeeeeEEcCC-C-EEEEEcCC
Confidence            5567788888999999876 332111                           0112234556666666 3 36678888


Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~  368 (502)
                      +.|..||.. ++.+..+......+.++...+++ . +..++  +.|..+| .++............+.++...+++  .+
T Consensus       157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g--~l  228 (330)
T 3hxj_A          157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG--TI  228 (330)
T ss_dssp             SEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS--CE
T ss_pred             CEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC--eE
Confidence            999999998 88777776556667777887777 4 44455  8899999 5443322122223457777887764  47


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC
Q 010748          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK  448 (502)
Q Consensus       369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~  448 (502)
                      ++++.++.|..++.. +         ..++.+......+.++.+.++  ..|..++.+|.|..+|. +++.  +......
T Consensus       229 ~v~t~~~gl~~~~~~-g---------~~~~~~~~~~~~~~~~~~~~~--g~l~v~t~~ggl~~~d~-~g~~--~~~~~~~  293 (330)
T 3hxj_A          229 YVTSLDGHLYAINPD-G---------TEKWRFKTGKRIESSPVIGNT--DTIYFGSYDGHLYAINP-DGTE--KWNFETG  293 (330)
T ss_dssp             EEEETTTEEEEECTT-S---------CEEEEEECSSCCCSCCEECTT--SCEEEECTTCEEEEECT-TSCE--EEEEECS
T ss_pred             EEEcCCCeEEEECCC-C---------CEeEEeeCCCCccccceEcCC--CeEEEecCCCCEEEECC-CCcE--EEEEEcC
Confidence            778888889888743 2         445555555454556666654  45777888888999996 5553  3333334


Q ss_pred             CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       449 ~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      ...+.++...+++.  |..|+.+|.+++......
T Consensus       294 ~~~~~~~~~d~~g~--l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          294 SWIIATPVIDENGT--IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             SCCCSCCEECTTCC--EEEECTTSCEEEEEC---
T ss_pred             CccccceEEcCCCE--EEEEcCCCeEEEEecccc
Confidence            45567778888886  556899999998876543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.83  E-value=1e-06  Score=92.60  Aligned_cols=199  Identities=9%  Similarity=0.116  Sum_probs=126.9

Q ss_pred             ceeeEEeccCCCcEEEEEecCC-------------------cEEEEeCCCCeeeEeecc--CC-------CCeEEEEEcC
Q 010748          268 SVLGLAWNKEFRNILASASADK-------------------QVKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNH  319 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg-------------------~v~vwd~~~~~~~~~~~~--h~-------~~v~~l~~~~  319 (502)
                      ....+++.|. ..+|+.++.++                   +|..+|..+|+.+..++.  |.       .....+....
T Consensus       244 ~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~  322 (677)
T 1kb0_A          244 MWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI  322 (677)
T ss_dssp             CCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE
T ss_pred             cccceeEcCC-CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc
Confidence            3456788888 45777776654                   599999999999887753  21       1122223333


Q ss_pred             CCC--cEEEEEeCCCcEEEEecCCCCCccceEeec----------CC-e------------------------eEEEeCC
Q 010748          320 HSP--QILLSGSFDRSVVMKDARISTHSGFKWAVA----------AD-V------------------------ESLAWDP  362 (502)
Q Consensus       320 ~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~~-v------------------------~~v~~~~  362 (502)
                      +|.  ..++.++.+|.|+++|.++++.+.......          +. +                        ..++++|
T Consensus       323 dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp  402 (677)
T 1kb0_A          323 AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP  402 (677)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET
T ss_pred             CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC
Confidence            442  578899999999999999887543211000          00 0                        1467788


Q ss_pred             CCCCEEEEEeC-------------------------------------------CCcEEEEECCCCCCCCCCCCCccceE
Q 010748          363 HAEHSFVVSLE-------------------------------------------DGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       363 ~~~~~~~~~~~-------------------------------------------dg~v~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                      +.. ++++...                                           .|.|..||+.++         +.+++
T Consensus       403 ~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG---------~~~W~  472 (677)
T 1kb0_A          403 QTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ---------KAAWS  472 (677)
T ss_dssp             TTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---------EEEEE
T ss_pred             CCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---------cEEee
Confidence            755 5655432                                           277999999887         66777


Q ss_pred             EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC-CcEEEEEEcCCCCcEEEEEeC--------
Q 010748          400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGS--------  470 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~ll~sg~~--------  470 (502)
                      ... ..++.+..+...+ .++++++.||.+++||..+++.  +..+.... ..-.-+.|..+|+..+++.+.        
T Consensus       473 ~~~-~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~--lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~  548 (677)
T 1kb0_A          473 VEH-VSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEK--LWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLA  548 (677)
T ss_dssp             EEE-SSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHH
T ss_pred             cCC-CCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCce--eeeeeCCCCcccCCEEEEeCCEEEEEEeccCCcccccc
Confidence            653 3444555566666 7888899999999999999984  44433221 222335566788644444322        


Q ss_pred             --------CCcEEEEECCC
Q 010748          471 --------KGKLEIWDTLS  481 (502)
Q Consensus       471 --------dg~i~vwd~~~  481 (502)
                              .+.+.+|.+..
T Consensus       549 ~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          549 ARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             CCSCSCCCCCEEEEEEETC
T ss_pred             ccccccCCCCeEEEEeccc
Confidence                    36788888864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.81  E-value=7.4e-07  Score=81.26  Aligned_cols=198  Identities=10%  Similarity=0.001  Sum_probs=134.1

Q ss_pred             ceeeEEeccCCCcEEEEEec--CCcEEEEeCCCCeeeEeeccCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          268 SVLGLAWNKEFRNILASASA--DKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~--dg~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      ....|.|+++ +.++++.+.  ++.|.++|+.+++.+.++.... .....+++.  +..+.++.-.++.+.++|..+.+.
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence            3579999998 444444443  5799999999999988875222 233455665  335666666789999999998766


Q ss_pred             ccceEeec-CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc--C---CCeeEEEEcCCCCC
Q 010748          345 SGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPN  418 (502)
Q Consensus       345 ~~~~~~~~-~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~  418 (502)
                      ... .... ..-..+  ++++..++ ++..++.|.++|..+.         +.+..+...  .   ..++.+.|. ++ .
T Consensus        99 ~~~-i~~g~~~g~gl--t~Dg~~l~-vs~gs~~l~viD~~t~---------~v~~~I~Vg~~~~p~~~~nele~~-dg-~  163 (266)
T 2iwa_A           99 IKN-FTHQMKDGWGL--ATDGKILY-GSDGTSILYEIDPHTF---------KLIKKHNVKYNGHRVIRLNELEYI-NG-E  163 (266)
T ss_dssp             EEE-EECCSSSCCEE--EECSSSEE-EECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred             EEE-EECCCCCeEEE--EECCCEEE-EECCCCeEEEEECCCC---------cEEEEEEECCCCcccccceeEEEE-CC-E
Confidence            543 3333 222334  44566544 5557889999999886         444444422  1   236678887 44 5


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecC-----------CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          419 LLATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      +.+.....+.|.+.|..+++........+           .......++|+|++..+++++...+.|.+.++....
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            55555568899999999998544444321           113568999999998888988888999999987643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.81  E-value=4.1e-06  Score=81.71  Aligned_cols=210  Identities=6%  Similarity=0.043  Sum_probs=138.1

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      ..+..++|.+..+.++.+-...+.|..+++..+.....+.........+++.+.+..++++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            45789999987566666666778999999886654443433334556788887664666777777889888887544332


Q ss_pred             ceEeecCCeeEEEeCCCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          347 FKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~~~~~~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...........++++|.+..++++-... +.|..+++...         .........-.....|+|+|.+..+.++-+.
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---------~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS---------GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC---------CcEEEEECCCCCeeeEEEeCCCCEEEEEECC
Confidence            2222235678899998777555555555 78888887643         1112222233457899999876466666667


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .+.|..+++.......+  ..........+++.. + +++.+-...+.|..++..++..+..+.
T Consensus       267 ~~~I~~~d~dG~~~~~~--~~~~~~~P~giav~~-~-~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          267 HHVIERANLDGSHRKAV--ISQGLPHPFAITVFE-D-SLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTEEEEECTTSCSCEEE--ECSSCSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCeeEEE--EECCCCCceEEEEEC-C-EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            78899999876543222  222345677888833 3 467777778899999976766554443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.80  E-value=1.4e-07  Score=91.54  Aligned_cols=199  Identities=16%  Similarity=0.165  Sum_probs=130.9

Q ss_pred             eeEEec--cCCCcEEEEEecCCcEEEEeCCCC----eeeEeec------c-CCCCeEEEEEcCCCCcEEEEEeCC-----
Q 010748          270 LGLAWN--KEFRNILASASADKQVKIWDVAAG----KCNLTLE------H-HTDKVQAVAWNHHSPQILLSGSFD-----  331 (502)
Q Consensus       270 ~~l~~~--~~~~~~l~sgs~dg~v~vwd~~~~----~~~~~~~------~-h~~~v~~l~~~~~~~~~l~s~s~d-----  331 (502)
                      .+..++  ++.+.++++|..+++|.|+|+.+.    +.+.++.      . .......+...|++  +++++..+     
T Consensus        85 ~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~  162 (462)
T 2ece_A           85 LCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEG  162 (462)
T ss_dssp             GSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCS
T ss_pred             cccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCC
Confidence            344556  776777788888999999999755    6666662      1 11245567788998  66666555     


Q ss_pred             -CcEEEEecCCCCCccceEeec-C---CeeEEEeCCCCCCEEEEEe-------------------CCCcEEEEECCCCCC
Q 010748          332 -RSVVMKDARISTHSGFKWAVA-A---DVESLAWDPHAEHSFVVSL-------------------EDGTIKGFDIRTAKS  387 (502)
Q Consensus       332 -g~i~iwd~~~~~~~~~~~~~~-~---~v~~v~~~~~~~~~~~~~~-------------------~dg~v~i~d~~~~~~  387 (502)
                       |.|.++|..+.+... .+... .   --..+.|+|++. .++++.                   ...+|.+||+.+.  
T Consensus       163 ~g~v~vlD~~T~~v~~-~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--  238 (462)
T 2ece_A          163 PGGILMLDHYSFEPLG-KWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--  238 (462)
T ss_dssp             CCEEEEECTTTCCEEE-ECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--
T ss_pred             CCeEEEEECCCCeEEE-EEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--
Confidence             789999999887655 33222 1   123477899766 566653                   3689999999875  


Q ss_pred             CCCCCCCccceEEecc-C-CCeeEEEE--cCCCCCEEEEEe-----CCCcEEEEECCCCCeeEEEE--ecCC--------
Q 010748          388 DPDSTSQQSSFTLHAH-D-KAVCTISY--NPLVPNLLATGS-----TDKMVKLWDLSNNQPSCIAS--RNPK--------  448 (502)
Q Consensus       388 ~~~~~~~~~~~~~~~h-~-~~v~~l~~--sp~~~~~l~t~s-----~dg~i~vwd~~~~~~~~~~~--~~~~--------  448 (502)
                             +.+.++... . .....+.|  +|++...++++-     .+++|.+|....+.......  ....        
T Consensus       239 -------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          239 -------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             -------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred             -------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence                   455555542 1 23344555  999844445555     67788887765543222221  1110        


Q ss_pred             --------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          449 --------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       449 --------~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                              ......+.++||+++|+++.-..+.|.+||+..
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                    134678999999999777777788999999863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.77  E-value=1.2e-07  Score=91.19  Aligned_cols=212  Identities=9%  Similarity=0.044  Sum_probs=125.6

Q ss_pred             cceeeEEeccCCCcEEEEEe--cCCcEEEEeCCCCeeeEee-------ccCCCCeEEEEEcCCCCcEEEEEeC-----CC
Q 010748          267 DSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSF-----DR  332 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs--~dg~v~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~~l~s~s~-----dg  332 (502)
                      ..+..+++++++ .++++..  .++.++||.+.+++.. .+       ..|-..+.++++.+++ +++++-..     .+
T Consensus        17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence            578999999995 4777754  2343555555455533 22       2345689999999998 65555433     57


Q ss_pred             cEEEEecCCCCCccceEe------ecCCeeEEEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCC------CCCccc
Q 010748          333 SVVMKDARISTHSGFKWA------VAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDS------TSQQSS  397 (502)
Q Consensus       333 ~i~iwd~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~------~~~~~~  397 (502)
                      .|.+||+.+++.......      ....+..+++++.+...+++..   .++.|.+||+.++......      ......
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            899999987764332211      1234688999986554445554   5789999998765210000      000000


Q ss_pred             eEEec--------------cCCCeeEEEEcCCCCCEEEEEeCCC-cEEEEECC---CCCe-----eEEEEecCCCCcEEE
Q 010748          398 FTLHA--------------HDKAVCTISYNPLVPNLLATGSTDK-MVKLWDLS---NNQP-----SCIASRNPKAGAVFS  454 (502)
Q Consensus       398 ~~~~~--------------h~~~v~~l~~sp~~~~~l~t~s~dg-~i~vwd~~---~~~~-----~~~~~~~~~~~~v~~  454 (502)
                      ....+              ....+..|+|+|++ +.|+.+...+ .|..++..   ....     .......++.+....
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence            00000              01246889999998 7777776655 45444431   1110     000011122234567


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       455 ~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      ++++++|. ++++...++.|.+||..+++
T Consensus       253 ia~d~~G~-l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          253 ISIDKDHN-IYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             EEECTTCC-EEEEEGGGTEEEEEETTTTE
T ss_pred             EEECCCCC-EEEEccCCCeEEEEECCCCC
Confidence            89999997 68888888999999985554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.76  E-value=1.4e-05  Score=78.35  Aligned_cols=213  Identities=12%  Similarity=0.059  Sum_probs=138.5

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~  341 (502)
                      ...+..|+|.+..+.++.+-...+.|+.+++...    .....+.........|++.+.+.+++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            4568899999875656666666788999998752    223333334456788999886546777777788999999876


Q ss_pred             CCCccceEeecCCeeEEEeCCCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748          342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ................++++|.+..++++-.. .+.|...++...         .........-.....|++++.+..+.
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~---------~~~~~~~~~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC---------ccEEEEECCCCceEEEEEEeCCCEEE
Confidence            54333222233457899999976644544433 478888888643         22222222335678999998774555


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ++-+..+.|..+|+.......+...........++++..+  +++.+-...+.|..++..+++.+..+.
T Consensus       262 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~--~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          262 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETT--EEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCC--EEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            6656678899999977654444433333455677877433  467777778899999977776655443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.75  E-value=3.6e-07  Score=86.86  Aligned_cols=180  Identities=10%  Similarity=0.006  Sum_probs=121.2

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEe
Q 010748          281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  360 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~  360 (502)
                      .|..++.++.|..+|.. ++....+..+...+.++...+++ . +..++.++.|..+|.. +............+.++..
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            67778888999999988 77777666555666777777766 3 6678888999999988 4433222222344666677


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      .+++.  +++++  +.|..|| .++         ...+........+.++...+++  .|..++.++.|..++. +++. 
T Consensus       185 d~~g~--l~v~t--~~l~~~d-~~g---------~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~-~g~~-  246 (330)
T 3hxj_A          185 GKDGT--IYFGS--DKVYAIN-PDG---------TEKWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINP-DGTE-  246 (330)
T ss_dssp             CTTCC--EEEES--SSEEEEC-TTS---------CEEEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECT-TSCE-
T ss_pred             cCCCE--EEEEe--CEEEEEC-CCC---------cEEEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECC-CCCE-
Confidence            66543  66666  8899999 554         4556666566678888888865  4666777888888875 3432 


Q ss_pred             EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                       +.........+.++.+.+++.  |..++.+|.|..+|. +++.+.
T Consensus       247 -~~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g~~~~  288 (330)
T 3hxj_A          247 -KWRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DGTEKW  288 (330)
T ss_dssp             -EEEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TSCEEE
T ss_pred             -eEEeeCCCCccccceEcCCCe--EEEecCCCCEEEECC-CCcEEE
Confidence             333333333344566666775  666788888999996 555443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.73  E-value=1.4e-05  Score=76.65  Aligned_cols=208  Identities=5%  Similarity=0.052  Sum_probs=137.3

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      ..+..++|.+..+.++.+-...+.|..+++..+.....+.........+++.+.+..++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            34789999987565666666778999999886654443333334567889988664666777778899999987654332


Q ss_pred             ceEeecCCeeEEEeCCCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEe
Q 010748          347 FKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~~~~~~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      .....-.....++++|.+..++++-... +.|..+++...          ....+ ...-.....|+++|.+..+.++-+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~----------~~~~~~~~~~~~PnGla~d~~~~~lY~aD~  222 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS----------GRRIIADTHLFWPNGLTIDYAGRRMYWVDA  222 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------SCEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC----------CcEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence            2212234578899999776566665555 78888887643          11222 122345689999987646666666


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..+.|..+++.......+.  .........+++. .+ +++.+-...+.|..++..+++.+..+
T Consensus       223 ~~~~I~~~~~dG~~~~~~~--~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          223 KHHVIERANLDGSHRKAVI--SQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TTTEEEEEETTSCSCEEEE--CSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCEEEEEeCCCCceEEEE--eCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEe
Confidence            6788999998765432222  2234567788884 33 46777777788999986666655443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.72  E-value=5.9e-06  Score=78.42  Aligned_cols=258  Identities=9%  Similarity=-0.020  Sum_probs=143.4

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      |-+++|       .++++++.++..++.|..|+...... ..+......... .   .....  . ..........+.+|
T Consensus        21 p~~i~~-------d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~-~---~~~g~--~-~~~~~~~~~~p~gi   85 (322)
T 2fp8_A           21 PNSFTF-------DSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNK-A---FCENS--T-DAEKRPLCGRTYDI   85 (322)
T ss_dssp             CCCEEC-------CTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCH-H---HHTTC--C-CGGGHHHHCCEEEE
T ss_pred             ceEEEE-------cCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccc-c---ccccc--c-chhccccCCCCceE
Confidence            455665       67888888888899999998764221 110000000000 0   00000  0 00000112357889


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec----c-CCCCeEEEEEcC-CCCcEEEEEeC----------------
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNH-HSPQILLSGSF----------------  330 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~-h~~~v~~l~~~~-~~~~~l~s~s~----------------  330 (502)
                      ++.+..+ .|+.+...+.|..+|..+++. ..+.    + .......+++.+ ++ ++.++-..                
T Consensus        86 ~~~~~~g-~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~  162 (322)
T 2fp8_A           86 SYNLQNN-QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSD  162 (322)
T ss_dssp             EEETTTT-EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTC
T ss_pred             EEcCCCC-cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccC
Confidence            9997324 355554555688899776542 2221    1 123468899999 88 66665432                


Q ss_pred             -CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeE
Q 010748          331 -DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       331 -dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                       .+.|..||..+..... ..........++|+|++..++++-+..+.|..|++.....       .....+....+ ...
T Consensus       163 ~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-------~~~~~~~~~~g-P~g  233 (322)
T 2fp8_A          163 KTGRLIKYDPSTKETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-------GTAEVLVKIPN-PGN  233 (322)
T ss_dssp             CCEEEEEEETTTTEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-------TCEEEEEECSS-EEE
T ss_pred             CCceEEEEeCCCCEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-------CccceEEeCCC-CCC
Confidence             3678888876554322 2222345677999998764555556678999999875311       11111111223 788


Q ss_pred             EEEcCCCCCEEEEEeC----------CCcEEEEECCCCCeeEEEEecC-C-CCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          410 ISYNPLVPNLLATGST----------DKMVKLWDLSNNQPSCIASRNP-K-AGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       410 l~~sp~~~~~l~t~s~----------dg~i~vwd~~~~~~~~~~~~~~-~-~~~v~~~~~spd~~~ll~sg~~dg~i~vw  477 (502)
                      +++.++| ++.++...          .+.|..+|.. ++......... . ...+.++++ .++. |+++....+.|.++
T Consensus       234 i~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          234 IKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGIL  309 (322)
T ss_dssp             EEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEE
T ss_pred             eEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEE
Confidence            9999988 66655543          4668888875 44322222221 1 234666666 3554 66666677889999


Q ss_pred             ECCC
Q 010748          478 DTLS  481 (502)
Q Consensus       478 d~~~  481 (502)
                      ++..
T Consensus       310 ~~~~  313 (322)
T 2fp8_A          310 VYDK  313 (322)
T ss_dssp             EC--
T ss_pred             eccc
Confidence            8754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.69  E-value=1.2e-05  Score=75.78  Aligned_cols=232  Identities=14%  Similarity=0.100  Sum_probs=136.2

Q ss_pred             cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748          189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      ...+|..++|       +++++++++-...+.|..|+.+..  ...                        ..   .....
T Consensus        30 ~~~~pegia~-------~~~g~lyv~d~~~~~I~~~d~~g~--~~~------------------------~~---~~~~~   73 (306)
T 2p4o_A           30 VNTFLENLAS-------APDGTIFVTNHEVGEIVSITPDGN--QQI------------------------HA---TVEGK   73 (306)
T ss_dssp             TTCCEEEEEE-------CTTSCEEEEETTTTEEEEECTTCC--EEE------------------------EE---ECSSE
T ss_pred             CCCCcceEEE-------CCCCCEEEEeCCCCeEEEECCCCc--eEE------------------------EE---eCCCC
Confidence            3455667777       678887777777899999987531  000                        00   11235


Q ss_pred             eeeEEeccCCCcEEEEEec-CC-cEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748          269 VLGLAWNKEFRNILASASA-DK-QVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~-dg-~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      +.+|++.+++. ++++... ++ .|..++..+++...... ........++..+.+ ..+++-...+.|.++|.......
T Consensus        74 p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           74 VSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             EEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEe
Confidence            88899999954 5544433 22 47777877776543222 112233455555544 45555556888999987643111


Q ss_pred             cce----------EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          346 GFK----------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       346 ~~~----------~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      ...          ...-.....+  ++++..++++-+..+.|..|++.....      ......+. .......+++.++
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~------~~~~~~~~-~~~~P~gi~vd~d  222 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK------PGEPEIFV-EQTNIDDFAFDVE  222 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC------BCCCEEEE-ESCCCSSEEEBTT
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC------CCccEEEe-ccCCCCCeEECCC
Confidence            000          0001123444  676665666667788999999875210      01111111 1134677899998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc---CCCCcEEEEEe
Q 010748          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGG  469 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~ll~sg~  469 (502)
                      | +++++....+.|.+++.. ++...+..........++++|.   |++..|+++..
T Consensus       223 G-~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          223 G-NLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             C-CEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             C-CEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            8 777777778889999975 5432233333334568999998   88876666554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.65  E-value=4.1e-06  Score=76.32  Aligned_cols=198  Identities=10%  Similarity=0.010  Sum_probs=128.0

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecC--CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748          191 AFPLCMAWLDCPLKDREKGNFMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       191 ~~~~~~~~~~~~~~~s~~~~~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      .+|..+.+       ++++.+.++.+.  ++.|+++|+.+++.+....+                         ..+ ..
T Consensus        21 ~f~~Gl~~-------~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------------------------~~~-~f   67 (266)
T 2iwa_A           21 AFTQGLVY-------AENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-------------------------DDS-YF   67 (266)
T ss_dssp             CCEEEEEE-------CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-------------------------CTT-CC
T ss_pred             CCcccEEE-------eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-------------------------CCC-cc
Confidence            34556666       677655554443  57999999987654432211                         111 11


Q ss_pred             eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (502)
                      ...+++..  ..+.++.-.++.|.++|..+.+.+.++..-...-  ..+++++ ..|+++..++.|.++|..+.+.....
T Consensus        68 geGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~glt~Dg-~~l~vs~gs~~l~viD~~t~~v~~~I  142 (266)
T 2iwa_A           68 GEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGLATDG-KILYGSDGTSILYEIDPHTFKLIKKH  142 (266)
T ss_dssp             EEEEEEET--TEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEEEECS-SSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             eEEEEEeC--CEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEEEECC-CEEEEECCCCeEEEEECCCCcEEEEE
Confidence            22455543  4455666678999999999999999885321222  3344566 44555557899999999887655432


Q ss_pred             Eeec-----CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-------------CCCeeEE
Q 010748          349 WAVA-----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------------DKAVCTI  410 (502)
Q Consensus       349 ~~~~-----~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~l  410 (502)
                      .-..     ..++.+.|. ++ .+++....++.|.+.|..++         +.+..+...             ....+.|
T Consensus       143 ~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg---------~V~~~I~~~g~~~~~~~~~~~~~~v~nGI  211 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDG---------TLLGWILLPNLRKKLIDEGFRDIDVLNGI  211 (266)
T ss_dssp             ECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTC---------CEEEEEECHHHHHHHHHTTCTTCCCEEEE
T ss_pred             EECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCC---------cEEEEEECCCcccccccccccccCceEEE
Confidence            2111     236677787 44 35555556889999999987         455555421             1356899


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          411 SYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      +|+|++..+++|+...+.|.+.++...
T Consensus       212 a~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          212 AWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999998778888888899998887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.61  E-value=1.7e-06  Score=90.79  Aligned_cols=243  Identities=10%  Similarity=0.076  Sum_probs=141.4

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+..|++++.++.|..+|..+++.+.......                ..  ........++    +. + + .++.++.
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~----------------~~--~~~~~~~~P~----v~-~-~-~v~vg~~  170 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTD----------------PA--KPYSITGAPR----VV-K-G-KVIIGNG  170 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSC----------------TT--SSCBCCSCCE----EE-T-T-EEEECCB
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCC----------------CC--CcceecCCCE----EE-C-C-EEEEeCC
Confidence            36788889999999999998876554321100                00  0000011111    11 2 3 4555543


Q ss_pred             ------CCcEEEEeCCCCeeeEeeccCC-------------------------------CCeEEEEEcCCCCcEEEEEeC
Q 010748          288 ------DKQVKIWDVAAGKCNLTLEHHT-------------------------------DKVQAVAWNHHSPQILLSGSF  330 (502)
Q Consensus       288 ------dg~v~vwd~~~~~~~~~~~~h~-------------------------------~~v~~l~~~~~~~~~l~s~s~  330 (502)
                            +|.|..+|..+|+.+.++....                               .....+++.|.. .+++.++.
T Consensus       171 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~  249 (668)
T 1kv9_A          171 GAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTG  249 (668)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECC
T ss_pred             CCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCC
Confidence                  5899999999999988774210                               011246777777 67777877


Q ss_pred             CC-------------------cEEEEecCCCCCccceEee---------cCCeeEEEeCCCCC--CEEEEEeCCCcEEEE
Q 010748          331 DR-------------------SVVMKDARISTHSGFKWAV---------AADVESLAWDPHAE--HSFVVSLEDGTIKGF  380 (502)
Q Consensus       331 dg-------------------~i~iwd~~~~~~~~~~~~~---------~~~v~~v~~~~~~~--~~~~~~~~dg~v~i~  380 (502)
                      ++                   .|..+|.++++..-.....         ..+.....+..++.  ..+++++.+|.++++
T Consensus       250 ~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l  329 (668)
T 1kv9_A          250 NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL  329 (668)
T ss_dssp             CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence            66                   3899999887754322211         12222222222332  258888999999999


Q ss_pred             ECCCCCCCCCCCCCccceEEeccC------------C------------------------CeeEEEEcCCCCCEEEEE-
Q 010748          381 DIRTAKSDPDSTSQQSSFTLHAHD------------K------------------------AVCTISYNPLVPNLLATG-  423 (502)
Q Consensus       381 d~~~~~~~~~~~~~~~~~~~~~h~------------~------------------------~v~~l~~sp~~~~~l~t~-  423 (502)
                      |..++.         .+.......            .                        .-..++++|.. .+++.. 
T Consensus       330 D~~tG~---------~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~~  399 (668)
T 1kv9_A          330 DRTNGK---------LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIPY  399 (668)
T ss_dssp             ETTTCC---------EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEE
T ss_pred             ECCCCC---------EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEec
Confidence            998873         221111000            0                        01126777765 444431 


Q ss_pred             -----------------------------------eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEE
Q 010748          424 -----------------------------------STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       424 -----------------------------------s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg  468 (502)
                                                         ..+|.|..||+.+++.  +.....+ .++....+...+. +++++
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~--~W~~~~~-~~~~~~~~~t~gg-~vf~g  475 (668)
T 1kv9_A          400 QEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA--AWKVPYP-THWNGGTLSTAGN-LVFQG  475 (668)
T ss_dssp             EECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTT-EEEEE
T ss_pred             cccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE--EEEccCC-CCCcCceeEeCCC-EEEEE
Confidence                                               1247899999999884  3333222 2222223334455 57778


Q ss_pred             eCCCcEEEEECCCCcccccccc
Q 010748          469 GSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       469 ~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      +.+|.|++||..+++.+.+.-.
T Consensus       476 ~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          476 TAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             CTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCcccchhhhhhcChhheEecC
Confidence            9999999999999998866543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.58  E-value=5.4e-05  Score=80.27  Aligned_cols=212  Identities=12%  Similarity=0.064  Sum_probs=137.0

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~  341 (502)
                      ...+..|+|.+..+.++++-...+.|+.+++...    .....+.........|++.+.+.+++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            3567889999865656666666788999998753    223333333456778999887756777777789999999986


Q ss_pred             CCCccceEeecCCeeEEEeCCCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748          342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ................|+++|....++++-... +.|...++...         .....+...-.....|++.+..+.++
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---------~~~~lv~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------CEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---------ceEEEEeCCCCCceEEEEecCCCeEE
Confidence            543332222334588999999766455554333 77888888643         22222223335688999998764555


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ++=...+.|..+++.......+...........+|++..+  +|+++-...+.|...+..++..+..+
T Consensus       574 waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            5555667899999977654444333233344667777544  46777777788998988777665444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.58  E-value=0.00015  Score=77.83  Aligned_cols=197  Identities=10%  Similarity=0.127  Sum_probs=130.7

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd  338 (502)
                      ...|.++...+++.  |..|+.. -|.+|+..+++......       .....|.++...++| . |-.|+.++-|..|+
T Consensus       262 ~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~  336 (795)
T 4a2l_A          262 SNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYH  336 (795)
T ss_dssp             CSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEEC
T ss_pred             CCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeC
Confidence            35699999888743  4445555 58999988776543321       123579999999887 4 66788888899998


Q ss_pred             cCCCCCccceE------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe---------cc
Q 010748          339 ARISTHSGFKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------AH  403 (502)
Q Consensus       339 ~~~~~~~~~~~------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---------~h  403 (502)
                      ..+........      -....|.++...+++  .+.+|+.++-|..|+..+..          ...+.         ..
T Consensus       337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQR----------FTSYTLQEDESARGIG  404 (795)
T ss_dssp             GGGGSSEEECCCTTSSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCC----------EEEECCC------CCS
T ss_pred             CCcccceEEcCCCCCCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCc----------EEEEecCCCCcccCCC
Confidence            76544322111      123458899888865  47778888889999987641          11111         12


Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec--CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       404 ~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ...|.++...+++ .+|..|+.++-|.+||..+++........  .....|.++...+++. +.+ |+. +.|.+|+..+
T Consensus       405 ~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~  480 (795)
T 4a2l_A          405 SNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWL-GTL-SALVRFNPEQ  480 (795)
T ss_dssp             CSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEE-EES-SCEEEEETTT
T ss_pred             CccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEE-Eec-CceeEEeCCC
Confidence            3568899888876 64677787777999999887632221100  2345799999999887 333 455 4588999876


Q ss_pred             Cc
Q 010748          482 DA  483 (502)
Q Consensus       482 ~~  483 (502)
                      +.
T Consensus       481 ~~  482 (795)
T 4a2l_A          481 RS  482 (795)
T ss_dssp             TE
T ss_pred             Ce
Confidence            54

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.57  E-value=9.8e-05  Score=66.78  Aligned_cols=204  Identities=12%  Similarity=0.146  Sum_probs=133.7

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      +-...+..|+|+|+++.++++...++.|...|+. ++.++.+.- -....-.|++.+++ .++++.-.++.+.++++...
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTT
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCC
Confidence            4446799999999866566667788999999987 888877732 23567889998887 66666667788999887665


Q ss_pred             CCcc--ceE-------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-------eccCCC
Q 010748          343 THSG--FKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HAHDKA  406 (502)
Q Consensus       343 ~~~~--~~~-------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-------~~h~~~  406 (502)
                      ....  ...       ........++|+|.+.. |+++.+.....+|.+.....      ...+..+       ..+...
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~-L~va~E~~p~~i~~~~g~~~------~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT-FWFFKEKNPIEVYKVNGLLS------SNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE-EEEEEESSSEEEEEEESTTC------SSCCEEEECHHHHHTCCSSC
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCE-EEEEECcCCceEEEEccccc------CCceeeecchhhccccccCC
Confidence            4311  111       12345689999998764 44455444444554431100      0111111       113346


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      +.+++++|..+.+++.....+.|.++|.... +.....+...       ...--.|+|.++|. ++++ +.-+.++++.-
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEEC
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEEe
Confidence            7999999987677777777888999997754 5555555521       12568999999997 4554 66666666643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.55  E-value=7.5e-05  Score=70.53  Aligned_cols=209  Identities=10%  Similarity=0.091  Sum_probs=136.1

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeee-EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      ..+.+|+|.+..+.++.+-...+.|..+++..+... ..+...-.....+++.+.+..++++-...+.|.++++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            456789999875656666677789999998766321 2222223456788888766466777677889999998764433


Q ss_pred             cceEeecCCeeEEEeCCCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEE
Q 010748          346 GFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~~~~~~~~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ............++++|.+..++++-. ..+.|..+++...          ....+ ...-...+.|+++|.+..+.++-
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~----------~~~~~~~~~l~~Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS----------SRFIIINSEIYWPNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC----------SCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC----------CeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence            222233455788999987664444432 3578888887643          12222 22234568999999764666666


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +..+.|..+++.......+.  .........+++..+  .++.+-...+.|..++..+++.+..+.
T Consensus       185 ~~~~~I~~~d~dG~~~~~~~--~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          185 AKLNFIHKSNLDGTNRQAVV--KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTTTEEEEEETTSCSCEEEE--CSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCEEEEEcCCCCceEEEe--cCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCceEEEe
Confidence            67788999999765432232  223455778888644  367777777899999998777654443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.55  E-value=9.1e-06  Score=73.21  Aligned_cols=180  Identities=7%  Similarity=-0.004  Sum_probs=122.4

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeE--EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ--AVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      -...|.|+.  +.++.+.+.+|.|+++|+.+++.+.++ - .....  .+.+.  +..+.++.-.++.+.+||..+.+..
T Consensus        56 ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           56 FTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             ccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            347888874  468888888899999999999988887 2 23333  35554  4366666777899999999987766


Q ss_pred             cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec--cCC---CeeEEEEcCCCCCEE
Q 010748          346 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDK---AVCTISYNPLVPNLL  420 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~---~v~~l~~sp~~~~~l  420 (502)
                      .. +.....-..+++  ++. .++.+..++.|.++|..+.         +.+.++..  +..   .++.+.|. +| .+.
T Consensus       130 ~t-i~~~~eGwGLt~--Dg~-~L~vSdGs~~l~~iDp~T~---------~v~~~I~V~~~g~~v~~lNeLe~~-dG-~ly  194 (268)
T 3nok_A          130 RT-TRYSGEGWGLCY--WNG-KLVRSDGGTMLTFHEPDGF---------ALVGAVQVKLRGQPVELINELECA-NG-VIY  194 (268)
T ss_dssp             EE-EECSSCCCCEEE--ETT-EEEEECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred             EE-EeCCCceeEEec--CCC-EEEEECCCCEEEEEcCCCC---------eEEEEEEeCCCCcccccccccEEe-CC-EEE
Confidence            53 333333345554  344 5666667899999999886         44444433  222   34667776 44 555


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecC-----------CCCcEEEEEEcCCCCcEEEEE
Q 010748          421 ATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~v~~~~~spd~~~ll~sg  468 (502)
                      +..-....|.+.|..+++......+.+           .....+.|+|+|++..+++||
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            555568889999999998544444321           123578999999887667765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.54  E-value=1.5e-05  Score=71.71  Aligned_cols=181  Identities=10%  Similarity=0.068  Sum_probs=119.9

Q ss_pred             ceeeEEeccCCCcEEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeE--EEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          268 SVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQ--AVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      -...|.|+ + +.++.+.+.+|  .|+++|+.+++.+.++.... ...  .+..  .+..+.++.-.++.+.+||..+.+
T Consensus        44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCC
T ss_pred             ccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCCEEEEEEeeCCEEEEEECccCc
Confidence            34788898 4 45777777766  89999999999988886433 332  3444  343555666678999999999887


Q ss_pred             CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc--C---CCeeEEEEcCCCCC
Q 010748          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPN  418 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~  418 (502)
                      .... +.....-..+++  ++. .++.+..++.|.++|..+.         +.+.++...  .   ..++.+.|. ++ .
T Consensus       119 ~~~t-i~~~~eG~glt~--dg~-~L~~SdGs~~i~~iDp~T~---------~v~~~I~V~~~g~~~~~lNELe~~-~G-~  183 (262)
T 3nol_A          119 QVRS-FNYDGEGWGLTH--NDQ-YLIMSDGTPVLRFLDPESL---------TPVRTITVTAHGEELPELNELEWV-DG-E  183 (262)
T ss_dssp             EEEE-EECSSCCCCEEE--CSS-CEEECCSSSEEEEECTTTC---------SEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred             EEEE-EECCCCceEEec--CCC-EEEEECCCCeEEEEcCCCC---------eEEEEEEeccCCccccccceeEEE-CC-E
Confidence            6653 333333334444  455 4555555788999999886         444444432  2   334557776 44 5


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCC----------CCcEEEEEEcCCCCcEEEEE
Q 010748          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPK----------AGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~----------~~~v~~~~~spd~~~ll~sg  468 (502)
                      +.+..-.++.|.+.|..+++......+.+-          ....+.++|+|++..++++|
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            555555688999999999986554444311          23568999999988666655

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.53  E-value=5e-06  Score=87.20  Aligned_cols=277  Identities=10%  Similarity=-0.005  Sum_probs=141.4

Q ss_pred             cccccC-CCceEEEEEecCCc------ceeEEEEEecCCCCCCCeeeeeccccCCCcce--eeeecCCCCCCCCCCEEEE
Q 010748          144 DMTINP-NDAVIVCARNEDDV------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLC--MAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       144 ~~~~~p-~~~~l~~~~~~~~~------~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~la~  214 (502)
                      .+++.| ++++++.|+...+.      ..-.++.|+.....-..+.   ....+....|  ...       ..+++++++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~-------~~~g~lyv~  259 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT---VTVTKHDMFCPGISM-------DGNGQIVVT  259 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE---EEECSCCCSSCEEEE-------CTTSCEEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc---ccCCCCCCccccccC-------CCCCCEEEe
Confidence            556677 88888888754421      2236788876665211111   1111111122  222       468999999


Q ss_pred             ecC-CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe-cC----
Q 010748          215 GSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-AD----  288 (502)
Q Consensus       215 g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~d----  288 (502)
                      |+. +..+++||..+..- ..                        ...+. ....-.+++..++ +.+++.|+ .+    
T Consensus       260 GG~~~~~v~~yd~~t~~W-~~------------------------~~~~~-~~R~~~s~~~~~d-g~iyv~GG~~~~~~~  312 (656)
T 1k3i_A          260 GGNDAKKTSLYDSSSDSW-IP------------------------GPDMQ-VARGYQSSATMSD-GRVFTIGGSWSGGVF  312 (656)
T ss_dssp             CSSSTTCEEEEEGGGTEE-EE------------------------CCCCS-SCCSSCEEEECTT-SCEEEECCCCCSSSC
T ss_pred             CCCCCCceEEecCcCCce-eE------------------------CCCCC-ccccccceEEecC-CeEEEEeCcccCCcc
Confidence            985 46899999864210 00                        00000 0111123444556 45777777 34    


Q ss_pred             -CcEEEEeCCCCeeeEee----ccCCCCeEEEEEcCCCCcEEEEEeCCC---------cEEEEecCCCCCccceEeec--
Q 010748          289 -KQVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDR---------SVVMKDARISTHSGFKWAVA--  352 (502)
Q Consensus       289 -g~v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~~--  352 (502)
                       ..+.+||..+++-...-    ......-....+..++ .+++.|+.+|         .+..||..+..-........  
T Consensus       313 ~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~  391 (656)
T 1k3i_A          313 EKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN  391 (656)
T ss_dssp             CCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET
T ss_pred             cccceEeCCCCCcceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccc
Confidence             57999999887643320    0000000001122333 4555565544         46778877654222111111  


Q ss_pred             -------CCeeEEEeCCCCCCEEEEEeCCC-----------cEEEEECCCCCCCCCCCCCccceEE---eccCCC-eeEE
Q 010748          353 -------ADVESLAWDPHAEHSFVVSLEDG-----------TIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKA-VCTI  410 (502)
Q Consensus       353 -------~~v~~v~~~~~~~~~~~~~~~dg-----------~v~i~d~~~~~~~~~~~~~~~~~~~---~~h~~~-v~~l  410 (502)
                             ..-.++.|...+..++++|+.++           .|.+||..+.         . ....   ..+... -.++
T Consensus       392 ~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~---------~-W~~~~~~~mp~~R~~~~~  461 (656)
T 1k3i_A          392 RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS---------P-NTVFASNGLYFARTFHTS  461 (656)
T ss_dssp             TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC---------C-EEEECTTCCSSCCBSCEE
T ss_pred             cccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC---------C-eeEEccCCCCCCcccCCe
Confidence                   12344555443455777776432           5677776653         1 1111   112222 2344


Q ss_pred             EEcCCCCCEEEEEeCC-----------CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC
Q 010748          411 SYNPLVPNLLATGSTD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~  470 (502)
                      ...|++ .+++.|+.+           ..+.+||..+.+...+...........++.+.|+++ +++.||.
T Consensus       462 ~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~-v~v~GG~  530 (656)
T 1k3i_A          462 VVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG  530 (656)
T ss_dssp             EECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             EECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcE-EEecCCC
Confidence            566777 888888754           458999998776433222222222233456679998 6888885

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.50  E-value=0.00019  Score=68.81  Aligned_cols=241  Identities=10%  Similarity=0.006  Sum_probs=142.1

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC-CCCEEEEecCCC
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAVGSMEP  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~la~g~~dg  219 (502)
                      ...+....+. .+|+.+...      .|+.++....   .+....  .....|..++|       ++ ++.++.+-...+
T Consensus        35 ~~~C~~~~~~-~~ll~~~~~------~I~~i~~~g~---~~~~~~--~~~~~~~~l~~-------d~~~~~ly~~D~~~~   95 (349)
T 3v64_C           35 RRSCKALGPE-PVLLFANRI------DIRQVLPHRS---EYTLLL--NNLENAIALDF-------HHRRELVFWSDVTLD   95 (349)
T ss_dssp             SSCEEESSSC-CEEEEECBS------CEEEECTTSC---CEEEEE--CSCSCEEEEEE-------ETTTTEEEEEETTTT
T ss_pred             CCcccccccC-ceeEeeccc------ceEEEeCCCC---eeEEee--cCCCceEEEEE-------eccccEEEEEeccCC
Confidence            3455555663 445444432      4555554432   211111  11233566776       44 455555656678


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|+.++++......                           ...........|++.+.+++++++-...+.|.+.++...
T Consensus        96 ~I~r~~~~g~~~~~---------------------------~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           96 RILRANLNGSNVEE---------------------------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             EEEEEETTSCSCEE---------------------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEecCCCCceE---------------------------EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            89989886432100                           001112345778888765767777777789999998754


Q ss_pred             eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~  378 (502)
                      .....+...-.....+++.|.+..++++-... +.|..+++............-.....++++|.+..++++-...+.|.
T Consensus       149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence            43333333345678999999774666665555 78888888754433221122345788999987776666667778899


Q ss_pred             EEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      .+++...         .....+........++++. .+ .++++-...+.|..++..+++
T Consensus       229 ~~~~dG~---------~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          229 RANLDGS---------HRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEETTSC---------SCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             EEeCCCC---------ceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence            9998643         2222222234456777774 23 666666677888888855544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.48  E-value=0.00015  Score=77.82  Aligned_cols=279  Identities=10%  Similarity=0.137  Sum_probs=165.5

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeec-cccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010748          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      |.++...+++++.++..  +     .|+.|+....   .+..... ........++..       .++++ |.+|+.++-
T Consensus       133 i~~i~~d~~g~lwi~t~--~-----gl~~~~~~~~---~~~~~~~~~~~~~~i~~i~~-------d~~g~-lwigt~~~G  194 (795)
T 4a2l_A          133 VNGIEEISPEQLLISTP--E-----GLIMFDIKES---KFIDDSFSTAMHKTIASTLY-------RQGDQ-IYIGTSTDG  194 (795)
T ss_dssp             CCEEEEEETTEEEEEET--T-----EEEEEETTTT---EEECSSSCHHHHTCCEEEEE-------EETTE-EEEEESSSC
T ss_pred             EEEEEECCCCCEEEEEC--C-----ceEEEECCCC---EEEeccCCCCCCcceEEEEE-------CCCCC-EEEEECCCC
Confidence            77888888888776543  3     5677775543   2221110 000000122221       23454 444666555


Q ss_pred             EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~  300 (502)
                      |..|+........                        .  ....+...|.++...++ + .|..|+.++-|.+||..+++
T Consensus       195 l~~~~~~~~~~~~------------------------~--~~~~~~~~i~~i~~d~~-g-~lwigt~~~Gl~~~~~~~~~  246 (795)
T 4a2l_A          195 LYTYSITQKTFEK------------------------V--IPILGTKQIQAILQQSP-T-RIWVATEGAGLFLINPKTKE  246 (795)
T ss_dssp             EEEEETTTCCEEE------------------------C--C----CCCEEEEEEEET-T-EEEEEEBSSCEEEEETTTTE
T ss_pred             EEEEeCCCCeEEE------------------------e--cCCCCCCeeEEEEEcCC-C-CEEEEECCCCeEEEeCCCCe
Confidence            8888875422100                        0  00113456888888776 3 35556655559999988776


Q ss_pred             eeEeecc-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-------eecCCeeEEEeCCCCCC
Q 010748          301 CNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHAEH  366 (502)
Q Consensus       301 ~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~  366 (502)
                      .......       ....|.++...+++ . |..|+.. -|.+|+..+........       -....|.++...+++. 
T Consensus       247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-  322 (795)
T 4a2l_A          247 IKNYLHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-  322 (795)
T ss_dssp             EEEECCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-
T ss_pred             EEEeecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-
Confidence            5433221       23569999998887 4 4455555 58889877654322110       1235689999988664 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-------ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                       +.+|+.++-|..|+.....          ...+.       .....|.++...+++  .|..|+.++-|..|+..+++.
T Consensus       323 -lWigt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          323 -MWLGTYFGGLNYYHPIRNR----------FKNIRNIPYKNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             -EEEEESSSCEEEECGGGGS----------SEEECCCTTSSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCE
T ss_pred             -EEEEECCCCeEEeCCCccc----------ceEEcCCCCCCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcE
Confidence             7788888889999876431          11111       123568899888865  355677777799999887653


Q ss_pred             eEEEEe------cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          440 SCIASR------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       440 ~~~~~~------~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      ......      ......|.++...+++. +|..|+.++.|.+|+..++..
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcE
Confidence            222111      11235799999988887 355677777899999887653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.47  E-value=4.6e-05  Score=67.99  Aligned_cols=183  Identities=12%  Similarity=0.073  Sum_probs=120.5

Q ss_pred             cceeeEEeccCCCcEEEEEecCC--cEEEEeCCCCeeeEeeccCCCC-eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          267 DSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      .-...|.|++  +.++.+.+..|  .|+++|+.+++.+.++...... -..+...  +.++....-.++.+.+||..+.+
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            4466899986  34666666654  8999999999998887543221 1334443  33566666778999999999877


Q ss_pred             CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec--cC---CCeeEEEEcCCCCC
Q 010748          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPN  418 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~sp~~~~  418 (502)
                      .... +.....-..+++  ++. .++++..++.|.++|..+.         +.+.++..  +.   ..++.+.+. ++ .
T Consensus        97 ~~~t-i~~~~~Gwglt~--dg~-~L~vSdgs~~l~~iDp~t~---------~~~~~I~V~~~g~~~~~lNeLe~~-~G-~  161 (243)
T 3mbr_X           97 PRAR-FRYPGEGWALTS--DDS-HLYMSDGTAVIRKLDPDTL---------QQVGSIKVTAGGRPLDNLNELEWV-NG-E  161 (243)
T ss_dssp             EEEE-EECSSCCCEEEE--CSS-CEEEECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred             EEEE-EeCCCCceEEee--CCC-EEEEECCCCeEEEEeCCCC---------eEEEEEEEccCCcccccceeeEEe-CC-E
Confidence            6553 333344445554  344 4555666889999999886         44444443  22   244566665 33 5


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecC-----------CCCcEEEEEEcCCCCcEEEEE
Q 010748          419 LLATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~v~~~~~spd~~~ll~sg  468 (502)
                      +.+..-....|.+.|..+++......+.+           .....+.++++|++..+++||
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            55555467889999999998544444331           123578999999887666665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.46  E-value=1.3e-06  Score=91.89  Aligned_cols=210  Identities=13%  Similarity=0.090  Sum_probs=128.8

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCC----CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      ..+..|+|.+..+.++++-...+.|+.+++..    ......+.........|++.+.+.+++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            35678899987554555555668899999875    22222222222345678888665466666667789999998765


Q ss_pred             CCccceEeecCCeeEEEeCCCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEE
Q 010748          343 THSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ...............++++|.+..++++-... +.|..+++...          ....+ ...-.....|+|+|.+..++
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~----------~~~~l~~~~l~~PnGlavd~~~~~LY  555 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----------DIYSLVTENIQWPNGITLDLLSGRLY  555 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC----------CCCEESCSSCSSCCCEEECTTTCCEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC----------CeeEEEeCCCCCccEEEEeccCCEEE
Confidence            43221111224567889998766555544333 67877776532          11112 12234567899999875777


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ++-+..+.|.++++.......+............|++..+  +++++....+.|..++..+++.+..+
T Consensus       556 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          556 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            7777788899999976543333222222233445666554  46777777789999998877765544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.44  E-value=0.00013  Score=70.91  Aligned_cols=202  Identities=10%  Similarity=0.008  Sum_probs=126.3

Q ss_pred             CcceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccccee
Q 010748          192 FPLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  270 (502)
Q Consensus       192 ~~~~~~~~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  270 (502)
                      .|..++|       .+ ++.++.+-...+.|+.++++.... ..                          ..........
T Consensus       117 ~~~gl~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~--------------------------~~~~~~~~p~  162 (386)
T 3v65_B          117 NAIALDF-------HHRRELVFWSDVTLDRILRANLNGSNV-EE--------------------------VVSTGLESPG  162 (386)
T ss_dssp             CEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCCE-EE--------------------------EECSSCSCCC
T ss_pred             ccEEEEE-------ecCCCeEEEEeCCCCcEEEEecCCCCc-EE--------------------------EEeCCCCCcc
Confidence            4566777       44 455556666678899998864221 00                          0011123456


Q ss_pred             eEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCccceE
Q 010748          271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSGFKW  349 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~  349 (502)
                      .|++.+.+++++++-...+.|.+.++........+...-.....|++.|.+..++++-... +.|..+++..........
T Consensus       163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  242 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  242 (386)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            7888876566777777778899998875443333333345678999999774555555455 778888876544332111


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ..-.....++|+|.+..++++-+..+.|..+++...         .....+........+|++.. + .++++-...+.|
T Consensus       243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~---------~~~~~~~~~~~~P~giav~~-~-~ly~td~~~~~V  311 (386)
T 3v65_B          243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---------HRKAVISQGLPHPFAITVFE-D-SLYWTDWHTKSI  311 (386)
T ss_dssp             SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC---------SCEEEECSSCSSEEEEEEET-T-EEEEEETTTTEE
T ss_pred             CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC---------eeEEEEECCCCCceEEEEEC-C-EEEEeeCCCCeE
Confidence            223357889999877766666677788999998643         22222222344567777743 3 677777778889


Q ss_pred             EEEECCCCC
Q 010748          430 KLWDLSNNQ  438 (502)
Q Consensus       430 ~vwd~~~~~  438 (502)
                      ..++..+++
T Consensus       312 ~~~~~~~G~  320 (386)
T 3v65_B          312 NSANKFTGK  320 (386)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCc
Confidence            999865554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.41  E-value=6.9e-05  Score=76.93  Aligned_cols=242  Identities=10%  Similarity=0.021  Sum_probs=136.6

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+..|++++.++.|..+|..+++.+.....-.                .  .........++    .. + + .++.++.
T Consensus       114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~----------------~--~~~~~~~~~P~----v~-~-g-~v~vg~~  168 (571)
T 2ad6_A          114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCD----------------P--KVGSTLTQAPF----VA-K-D-TVLMGCS  168 (571)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC----------------G--GGTCBCCSCCE----EE-T-T-EEEEECB
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEecCCC----------------C--CccceeccCCE----EE-C-C-EEEEEec
Confidence            36678888889999999998776543221100                0  00000011111    11 2 3 4555554


Q ss_pred             ------CCcEEEEeCCCCeeeEeeccCCCC-------------------------------------e-EEEEEcCCCCc
Q 010748          288 ------DKQVKIWDVAAGKCNLTLEHHTDK-------------------------------------V-QAVAWNHHSPQ  323 (502)
Q Consensus       288 ------dg~v~vwd~~~~~~~~~~~~h~~~-------------------------------------v-~~l~~~~~~~~  323 (502)
                            ++.|..+|..+|+.+.++......                                     + ..+++.+.. .
T Consensus       169 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g  247 (571)
T 2ad6_A          169 GAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-N  247 (571)
T ss_dssp             CGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-T
T ss_pred             CCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-C
Confidence                  789999999999988776432110                                     0 124555655 4


Q ss_pred             EEEEEeCC----------------CcEEEEecCCCCCccceEeec---------CCeeEEEeCCCCC--CEEEEEeCCCc
Q 010748          324 ILLSGSFD----------------RSVVMKDARISTHSGFKWAVA---------ADVESLAWDPHAE--HSFVVSLEDGT  376 (502)
Q Consensus       324 ~l~s~s~d----------------g~i~iwd~~~~~~~~~~~~~~---------~~v~~v~~~~~~~--~~~~~~~~dg~  376 (502)
                      .++.++.+                +.|..+|.++++..-......         ....-+...+++.  .+++.++.+|.
T Consensus       248 ~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~  327 (571)
T 2ad6_A          248 LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI  327 (571)
T ss_dssp             EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE
T ss_pred             eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcE
Confidence            55555432                358899998876532211110         0111112222332  35777889999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccC-------------CCe--------------------------eEEEEcCCCC
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHD-------------KAV--------------------------CTISYNPLVP  417 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~  417 (502)
                      ++++|..++         +.++......             .++                          ..++++|.. 
T Consensus       328 l~~lD~~tG---------~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-  397 (571)
T 2ad6_A          328 LYTLNRENG---------NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES-  397 (571)
T ss_dssp             EEEEETTTC---------CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-
T ss_pred             EEEEECCCC---------CEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-
Confidence            999999887         3333332111             011                          246778876 


Q ss_pred             CEEEEEe-------------------------------------CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          418 NLLATGS-------------------------------------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       418 ~~l~t~s-------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      .+|+..+                                     .+|.|..||+.+++.  +...... ..+.+..+...
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~--~W~~~~~-~~~~~~~~~t~  474 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA--KWTKWEK-FAAWGGTLYTK  474 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE--EEEEEES-SCCCSBCEEET
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE--EEEecCC-CCccceeEEEC
Confidence            5555543                                     357899999998874  3332211 12222222223


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          461 SPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       461 ~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +. ++.+++.+|.|+.||..+++.+.+.-
T Consensus       475 gg-~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          475 GG-LVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CC-EEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            44 46668999999999999999886544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.40  E-value=0.0002  Score=76.16  Aligned_cols=254  Identities=7%  Similarity=-0.010  Sum_probs=133.4

Q ss_pred             cccccccc-CCCceEEEEEecCCcceeEEEEEecCCC-CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748          141 DLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       141 ~v~~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d  218 (502)
                      .+....|| |+|++||.+..........||+++...+ .  .+.           ..+.+....+.|+|+|+.|+....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~--~l~-----------~~~~~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ--TIA-----------DKVSGTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC--CCC-----------CCEEEECSCCEECSSTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE--eCC-----------ccccCceeeEEEecCCCEEEEEEEC
Confidence            56778999 9999999887653222346777775543 2  110           0111222234448999888877665


Q ss_pred             -----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec--CCcE
Q 010748          219 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQV  291 (502)
Q Consensus       219 -----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--dg~v  291 (502)
                           ..|.++++.+...... .+                      .. ..+......+.|+|+++.++++...  ...|
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~-lv----------------------~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l  297 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDV-CL----------------------YE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEV  297 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCE-EE----------------------EE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             CCCCCCEEEEEECCCCchhcE-EE----------------------Ee-cCCCceEEEEEECCCCCEEEEEecCCCCceE
Confidence                 2577777754321100 00                      00 0122345678999996644444432  3458


Q ss_pred             EEEeCCCC--ee-eEee-ccCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEecCCCCCccc-eEeecC--CeeEEEe
Q 010748          292 KIWDVAAG--KC-NLTL-EHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGF-KWAVAA--DVESLAW  360 (502)
Q Consensus       292 ~vwd~~~~--~~-~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~v~~  360 (502)
                      .++|+.++  +. +..+ ........++.|+..+ .+++.+..+    ..|..+++.++..... ...+..  .+..+.+
T Consensus       298 ~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~  376 (751)
T 2xe4_A          298 HLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV  376 (751)
T ss_dssp             EEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE
T ss_pred             EEEECCCCCCCceeEEeecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE
Confidence            88898875  23 1333 3344566667766544 555655544    3566667654322222 233333  3455555


Q ss_pred             CCCCCCEEEEEeCCCc--EEEEECC------CCCCCCCCCCCccceEEeccC-CCeeEEEE----cCCCCCEEEEEeCC-
Q 010748          361 DPHAEHSFVVSLEDGT--IKGFDIR------TAKSDPDSTSQQSSFTLHAHD-KAVCTISY----NPLVPNLLATGSTD-  426 (502)
Q Consensus       361 ~~~~~~~~~~~~~dg~--v~i~d~~------~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~----sp~~~~~l~t~s~d-  426 (502)
                      .  +..++++...+|.  |.++++.      ..        ......+.... ..+..+.+    ++++..++++.+.. 
T Consensus       377 ~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~--------g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~  446 (751)
T 2xe4_A          377 R--SNYLVVAGRRAGLTRIWTMMADSQDGVFKA--------GTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLA  446 (751)
T ss_dssp             C--SSEEEEEEEETTEEEEEEEECCTTTSCCCT--------TTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETT
T ss_pred             E--CCEEEEEEEeCCEEEEEEEecccccccccC--------CccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCC
Confidence            4  4557777777886  4555641      11        01022222111 22333332    34554566665543 


Q ss_pred             --CcEEEEECCCCCeeEE
Q 010748          427 --KMVKLWDLSNNQPSCI  442 (502)
Q Consensus       427 --g~i~vwd~~~~~~~~~  442 (502)
                        ..+..+|+.+++...+
T Consensus       447 ~P~~~~~~d~~~~~~~~l  464 (751)
T 2xe4_A          447 TPNTWFDVSPQDHSRTAV  464 (751)
T ss_dssp             EEEEEEEECTTTCCEEEE
T ss_pred             CCCEEEEEECCCCcEEEE
Confidence              3577788877664333

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.40  E-value=6.7e-05  Score=71.02  Aligned_cols=242  Identities=8%  Similarity=-0.007  Sum_probs=134.6

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeec------------------cccCCCcceeeeecCC
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH------------------IIIPAFPLCMAWLDCP  202 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~  202 (502)
                      .-+.+++.|+++++.++...+     .|+.|+....   .+.....                  ......|.++.+    
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~-----~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~----   87 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDG-----RVIKYEGPNS---GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY----   87 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTS-----EEEEECCTTT---CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE----
T ss_pred             CceEEEEcCCCCEEEEEcCCC-----eEEEECCCCC---ceEEEecccccccccccccccchhccccCCCCceEEE----
Confidence            346788999999787776665     7888865543   2221110                  011123555554    


Q ss_pred             CCCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCccccccccc-CcccceeeEEecc-CCC
Q 010748          203 LKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNK-EFR  279 (502)
Q Consensus       203 ~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~-~~~  279 (502)
                         .+ +++++++ ...+.|.+++..+... ..   +.                    .... ........+++.+ ++ 
T Consensus        88 ---~~~~g~l~v~-d~~~~i~~~d~~~g~~-~~---~~--------------------~~~~~~~~~~p~~i~~d~~~G-  138 (322)
T 2fp8_A           88 ---NLQNNQLYIV-DCYYHLSVVGSEGGHA-TQ---LA--------------------TSVDGVPFKWLYAVTVDQRTG-  138 (322)
T ss_dssp             ---ETTTTEEEEE-ETTTEEEEECTTCEEC-EE---EE--------------------SEETTEECSCEEEEEECTTTC-
T ss_pred             ---cCCCCcEEEE-ECCCCEEEEeCCCCEE-EE---ec--------------------ccCCCCcccccceEEEecCCC-
Confidence               45 5554444 3334477777653211 00   00                    0000 1113467899999 74 


Q ss_pred             cEEEEEec-----------------CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          280 NILASASA-----------------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       280 ~~l~sgs~-----------------dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      ++.++-..                 .+.|..||..+++....... -.....|+|+|++..++++-+..+.|.+|++...
T Consensus       139 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          139 IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred             EEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            45554322                 36789999877764332221 2345679999998334455566789999998754


Q ss_pred             CCc--cceEeecCCeeEEEeCCCCCCEEEEEeC----------CCcEEEEECCCCCCCCCCCCCccceEEeccC----CC
Q 010748          343 THS--GFKWAVAADVESLAWDPHAEHSFVVSLE----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD----KA  406 (502)
Q Consensus       343 ~~~--~~~~~~~~~v~~v~~~~~~~~~~~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~----~~  406 (502)
                      ...  .......+ ...+++++++. ++++...          .+.|..+|.. +         ..+..+....    ..
T Consensus       218 ~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G---------~~~~~~~~~~g~~~~~  285 (322)
T 2fp8_A          218 KKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF-G---------NILEVIPLPPPFAGEH  285 (322)
T ss_dssp             TTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT-S---------CEEEEEECCTTTTTSC
T ss_pred             cCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCC-C---------CEEEEEECCCCCcccc
Confidence            221  11112233 77899999875 5555433          4668888764 2         3444444332    34


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ++++++. .+ .++++....+.|.++++....
T Consensus       286 ~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          286 FEQIQEH-DG-LLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             CCEEEEE-TT-EEEEECSSCSEEEEEEC----
T ss_pred             ceEEEEe-CC-EEEEeecCCCceEEEeccccc
Confidence            6667663 33 666666667889999886544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.36  E-value=0.00012  Score=75.30  Aligned_cols=59  Identities=12%  Similarity=0.041  Sum_probs=37.3

Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .|.|..||+.+++.  +..... ..++.+-.+...+. ++..++.||.|+.||..+++.+-+.
T Consensus       452 ~G~l~A~D~~tG~~--~W~~~~-~~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          452 LGQIKAYNAITGDY--KWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             CEEEEEECTTTCCE--EEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCeEEEEECCCCCE--EeEecC-CCCccCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEe
Confidence            46788899988873  333221 11111111122344 5666899999999999999988654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.33  E-value=6.9e-05  Score=78.53  Aligned_cols=161  Identities=10%  Similarity=0.130  Sum_probs=102.7

Q ss_pred             cceeeEEeccCCCcEEEEEecCC-------------------cEEEEeCCCCeeeEeecc--CC-------CCeEEEEEc
Q 010748          267 DSVLGLAWNKEFRNILASASADK-------------------QVKIWDVAAGKCNLTLEH--HT-------DKVQAVAWN  318 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg-------------------~v~vwd~~~~~~~~~~~~--h~-------~~v~~l~~~  318 (502)
                      .....+++.+. ..+++.++.++                   .|..+|+.+|+.+..++.  |.       .+.....+.
T Consensus       230 ~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~  308 (668)
T 1kv9_A          230 TVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN  308 (668)
T ss_dssp             CCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred             ccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec
Confidence            34456788887 44777777665                   399999999999888753  22       222222222


Q ss_pred             CCCC--cEEEEEeCCCcEEEEecCCCCCccceE--------eec----CC------------------------eeEEEe
Q 010748          319 HHSP--QILLSGSFDRSVVMKDARISTHSGFKW--------AVA----AD------------------------VESLAW  360 (502)
Q Consensus       319 ~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~----~~------------------------v~~v~~  360 (502)
                      .++.  ..++.++.+|.++++|..+++.+....        ...    .+                        -..+++
T Consensus       309 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~  388 (668)
T 1kv9_A          309 IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSF  388 (668)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceE
Confidence            3441  268899999999999998887542110        000    00                        012566


Q ss_pred             CCCCCCEEEEEe------------------------------------CCCcEEEEECCCCCCCCCCCCCccceEEeccC
Q 010748          361 DPHAEHSFVVSL------------------------------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  404 (502)
Q Consensus       361 ~~~~~~~~~~~~------------------------------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~  404 (502)
                      +|... ++++..                                    .+|.|..||+.++         +.+++...+.
T Consensus       389 dp~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG---------~~~W~~~~~~  458 (668)
T 1kv9_A          389 NPGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ---------KAAWKVPYPT  458 (668)
T ss_dssp             ETTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT---------EEEEEEEESS
T ss_pred             CCCCC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC---------cEEEEccCCC
Confidence            66544 444321                                    2377999999887         6667765443


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                       +.....+...+ .++++++.|+.|++||..+++..
T Consensus       459 -~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          459 -HWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             -SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             -CCcCceeEeCC-CEEEEECCcccchhhhhhcChhh
Confidence             23333334444 78889999999999999999843

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.31  E-value=4.7e-05  Score=81.08  Aligned_cols=234  Identities=10%  Similarity=0.002  Sum_probs=125.3

Q ss_pred             CC-CCCCEEEEecC-CC----cEEEeeCCCC-CCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC
Q 010748          205 DR-EKGNFMAVGSM-EP----AIEIWDLDVI-DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE  277 (502)
Q Consensus       205 ~s-~~~~~la~g~~-dg----~I~iwdl~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~  277 (502)
                      +| |+|++||.+.. .|    .|+++|+.++ ..+..                          .   -......++|+|+
T Consensus       181 ~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------------------------~---~~~~~~~~~WspD  231 (751)
T 2xe4_A          181 PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------------------------K---VSGTNGEIVWGPD  231 (751)
T ss_dssp             ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--------------------------C---EEEECSCCEECSS
T ss_pred             ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--------------------------c---ccCceeeEEEecC
Confidence            39 99999986543 22    4999999875 32110                          0   0112457899999


Q ss_pred             CCcEEEEEecC-----CcEEEEeCCCCee--eEeec-cCCCCeEEEEEcCCCCcEEEEEe-C--CCcEEEEecCCCC--C
Q 010748          278 FRNILASASAD-----KQVKIWDVAAGKC--NLTLE-HHTDKVQAVAWNHHSPQILLSGS-F--DRSVVMKDARIST--H  344 (502)
Q Consensus       278 ~~~~l~sgs~d-----g~v~vwd~~~~~~--~~~~~-~h~~~v~~l~~~~~~~~~l~s~s-~--dg~i~iwd~~~~~--~  344 (502)
                      +..++++ +.+     ..|.++++.+++.  ...+. ........+.|+|++ ++|+..+ .  ...|.++|+.++.  .
T Consensus       232 g~~l~y~-~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~~~d~~~~~~~~  309 (751)
T 2xe4_A          232 HTSLFYV-TKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVHLLDLRKGNAHN  309 (751)
T ss_dssp             TTEEEEE-EECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEEEEESSSCTTCC
T ss_pred             CCEEEEE-EECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEEEEECCCCCCCc
Confidence            6544444 444     3688889887642  22222 223456788999999 5554443 2  3467888887652  2


Q ss_pred             --ccceEeecCCeeEEEeCCCCCCEEEEEeCC----CcEEEEECCCCCCCCCCCCCccceE-EeccCC--CeeEEEEcCC
Q 010748          345 --SGFKWAVAADVESLAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDK--AVCTISYNPL  415 (502)
Q Consensus       345 --~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~-~~~h~~--~v~~l~~sp~  415 (502)
                        ............++.|+. +..+++.+..+    ..|..+++.+.         ..... +..+..  .+..+.+.  
T Consensus       310 ~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~---------~~~~~~li~~~~~~~l~~~~~~--  377 (751)
T 2xe4_A          310 TLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP---------SDWSHVLVDHSEDVFMESIAVR--  377 (751)
T ss_dssp             CEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTST---------TCCCCEEECCCSSEEEEEEEEC--
T ss_pred             eeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc---------ccceeeEECCCCCcEEEEEEEE--
Confidence              111112234445555544 45455555443    25666776532         11112 223333  34455554  


Q ss_pred             CCCEEEEEeCCCc--EEEEEC-------CCCC-eeEEEEecCCCCcEEEEEE----cCCCCcEEEEEeCC---CcEEEEE
Q 010748          416 VPNLLATGSTDKM--VKLWDL-------SNNQ-PSCIASRNPKAGAVFSVAF----SEDSPFVLAIGGSK---GKLEIWD  478 (502)
Q Consensus       416 ~~~~l~t~s~dg~--i~vwd~-------~~~~-~~~~~~~~~~~~~v~~~~~----spd~~~ll~sg~~d---g~i~vwd  478 (502)
                      +..++++...++.  |.++++       ..++ .. ...+... +.+..+.+    ++++..++++.++-   ..+..+|
T Consensus       378 ~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~-~l~l~~~-~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d  455 (751)
T 2xe4_A          378 SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLR-EVVMEEP-IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVS  455 (751)
T ss_dssp             SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCE-ECCCCCS-SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEEEEeCCEEEEEEEecccccccccCCccce-EECCCCc-eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            4467777777876  455565       3333 21 1122221 22334433    44665555554443   3577778


Q ss_pred             CCCCc
Q 010748          479 TLSDA  483 (502)
Q Consensus       479 ~~~~~  483 (502)
                      +.+++
T Consensus       456 ~~~~~  460 (751)
T 2xe4_A          456 PQDHS  460 (751)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            77654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.31  E-value=0.00033  Score=66.06  Aligned_cols=181  Identities=11%  Similarity=0.009  Sum_probs=117.8

Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC---CCccceEe-ecCCeeEEEeCCCC
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWA-VAADVESLAWDPHA  364 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~-~~~~v~~v~~~~~~  364 (502)
                      ..|+..|+.+......+. ....+.+++|++.+..++++-...+.|..+++...   ........ .-.....+++++.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            569999998876655554 34567899999877466666667789999998762   11111121 12356788888766


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC-CcEEEEECCCCCeeEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-KMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d-g~i~vwd~~~~~~~~~~  443 (502)
                      .+++++-...+.|.++++...         .....+...-.....+++.|.++.++++.... +.|..+++.......+ 
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~---------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~-  158 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-  158 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-
T ss_pred             CeEEEEECCCCEEEEEeCCCC---------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE-
Confidence            656666677889999998643         22222222335678999999763555554433 6888888865442222 


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                       ..........++++|++..++.+-...+.|..+++..
T Consensus       159 -~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          159 -VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             -ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence             1223456889999998776666666678999999864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.27  E-value=0.00039  Score=71.38  Aligned_cols=60  Identities=8%  Similarity=0.104  Sum_probs=38.5

Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +|.|..||+.+++.  +...... .++..-.....+. +++.|+.||.|+.||..+++.+.+.-
T Consensus       465 ~G~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          465 VGSLRAMDPVSGKV--VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCE--EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEEECCCCCE--EEEecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEec
Confidence            57899999999884  3222211 1111111112244 57779999999999999999886543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.00084  Score=71.80  Aligned_cols=198  Identities=9%  Similarity=0.041  Sum_probs=123.8

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      ...|.++...+++  .|..|+.++-|.+|+..+++.....   ......|.++...+++ . |..|+.++.|..++.++.
T Consensus       362 ~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~  437 (781)
T 3v9f_A          362 NKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG-N-LWFGTYLGNISYYNTRLK  437 (781)
T ss_dssp             SSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS-C-EEEEETTEEEEEECSSSC
T ss_pred             CcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC-C-EEEEeccCCEEEEcCCCC
Confidence            3568999888773  3556776677999998765432211   1234678999888777 4 555777778899988765


Q ss_pred             CCccceE--eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-----cCCCeeEEEEcCC
Q 010748          343 THSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----HDKAVCTISYNPL  415 (502)
Q Consensus       343 ~~~~~~~--~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~  415 (502)
                      +......  .....|.++...+++  .+.+|+. +.|..|+..+..         .......     ....|.++...++
T Consensus       438 ~~~~~~~~~~~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~i~~d~~  505 (781)
T 3v9f_A          438 KFQIIELEKNELLDVRVFYEDKNK--KIWIGTH-AGVFVIDLASKK---------VIHHYDTSNSQLLENFVRSIAQDSE  505 (781)
T ss_dssp             EEEECCSTTTCCCCEEEEEECTTS--EEEEEET-TEEEEEESSSSS---------CCEEECTTTSSCSCSCEEEEEECTT
T ss_pred             cEEEeccCCCCCCeEEEEEECCCC--CEEEEEC-CceEEEeCCCCe---------EEecccCcccccccceeEEEEEcCC
Confidence            4322111  123568888888754  4677776 568899987652         1111111     1357889988887


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEec-CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      + . |..|+..+-|..|+..+.+........ .....|.++...++|.  |-.|+..|.|..||..++.
T Consensus       506 g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWi~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          506 G-R-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQ--MWLATGEGLVCFPSARNFD  570 (781)
T ss_dssp             C-C-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSC--EEEEETTEEEEESCTTTCC
T ss_pred             C-C-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCC--EEEEECCCceEEECCCCCc
Confidence            6 4 444555444888988766522211111 1235689999999997  3334556654888887654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.26  E-value=0.00032  Score=65.78  Aligned_cols=228  Identities=8%  Similarity=0.059  Sum_probs=124.6

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC-
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP-  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg-  219 (502)
                      ..+.+++.|+++++++-...+     +|+.++....    +...  ...+..|.++++       .++|+++++..... 
T Consensus        33 ~pegia~~~~g~lyv~d~~~~-----~I~~~d~~g~----~~~~--~~~~~~p~gia~-------~~dG~l~vad~~~~~   94 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVG-----EIVSITPDGN----QQIH--ATVEGKVSGLAF-------TSNGDLVATGWNADS   94 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTT-----EEEEECTTCC----EEEE--EECSSEEEEEEE-------CTTSCEEEEEECTTS
T ss_pred             CcceEEECCCCCEEEEeCCCC-----eEEEECCCCc----eEEE--EeCCCCceeEEE-------cCCCcEEEEeccCCc
Confidence            356789999998776665454     7888875542    2111  123345566655       68888766654333 


Q ss_pred             -cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748          220 -AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       220 -~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~  298 (502)
                       .|..++..++.. .....                        . ........++..+. +..+++-+..+.|.++|..+
T Consensus        95 ~~v~~~d~~~g~~-~~~~~------------------------~-~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           95 IPVVSLVKSDGTV-ETLLT------------------------L-PDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             CEEEEEECTTSCE-EEEEE------------------------C-TTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEcCCCCeE-EEEEe------------------------C-CCccccCcccccCC-CcEEEEECCCCeEEEEeCCC
Confidence             355556543321 10000                        0 01111233443444 44555555688999999876


Q ss_pred             Cee-eEee---------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCc-cceEeecCCeeEEEeCCCCCC
Q 010748          299 GKC-NLTL---------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHS-GFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       299 ~~~-~~~~---------~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      ++. +...         ...-.....|  ++++..++++-+..+.|..|++.. +... ...+........+++++++. 
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~-  224 (306)
T 2p4o_A          148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-  224 (306)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-
T ss_pred             CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCC-
Confidence            532 1111         0111234555  677745666666788999999875 2211 11122224567788999874 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEc---CCCCCEEEEEe
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN---PLVPNLLATGS  424 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---p~~~~~l~t~s  424 (502)
                      ++++....+.|.+|+....        ...+..+...-...++++|.   |++..++++..
T Consensus       225 l~va~~~~~~V~~~~~~G~--------~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          225 LYGATHIYNSVVRIAPDRS--------TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEECBTTCCEEEECTTCC--------EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEEeCCCCeEEEECCCCC--------EEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            6666666788999986521        01111223333568899998   77634444443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.24  E-value=3.9e-05  Score=69.11  Aligned_cols=168  Identities=8%  Similarity=0.013  Sum_probs=115.5

Q ss_pred             eeeEeeccCC--CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeE--EEeCCCCCCEEEEEeCCC
Q 010748          300 KCNLTLEHHT--DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES--LAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       300 ~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~--v~~~~~~~~~~~~~~~dg  375 (502)
                      +.+.++. |.  ...+.|.|+. + .++++.+.+|.|+++|+.+++.....  .......  +++.  +..++++...++
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~  116 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSC
T ss_pred             EEEEEEc-CCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCC
Confidence            4555663 44  3458899974 3 78888888999999999999887655  5444433  5554  455777777899


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC---CcE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA---GAV  452 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~v  452 (502)
                      .+.+||..+.         +.+.++.... .-..++  +++ ..|+.+..++.|.++|..+.+.........+.   ..+
T Consensus       117 ~v~V~D~~Tl---------~~~~ti~~~~-eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          117 LLFTWSGMPP---------QRERTTRYSG-EGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             EEEEEETTTT---------EEEEEEECSS-CCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EEEEEECCcC---------cEEEEEeCCC-ceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            9999999987         6666666432 224555  445 55555556889999999998754333332222   245


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +.+.|. +|. +++..-....|.+.|..+++.+..+-
T Consensus       184 NeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          184 NELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             EEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             cccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEE
Confidence            677877 665 67666567899999999999876544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.23  E-value=2e-05  Score=82.69  Aligned_cols=202  Identities=11%  Similarity=0.175  Sum_probs=108.5

Q ss_pred             eeeEEeccCCCcEEEEEe-cCCcEEEEeCCCCeeeEeeccCCC-CeEEEEEcCCCCcEEEEEe-CC-----CcEEEEecC
Q 010748          269 VLGLAWNKEFRNILASAS-ADKQVKIWDVAAGKCNLTLEHHTD-KVQAVAWNHHSPQILLSGS-FD-----RSVVMKDAR  340 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs-~dg~v~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~s-~d-----g~i~iwd~~  340 (502)
                      ..++++..+ +.+++.|+ .+..+.+||..+++-...-..+.. .-.++...+++ ++++.|+ .+     ..+.+||..
T Consensus       245 ~~~~~~~~~-g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          245 CPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             SCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cccccCCCC-CCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCC
Confidence            445667777 45777877 456899999987754332221211 22345566677 7888888 44     568999987


Q ss_pred             CCCCccce----EeecCCeeEEEeCCCCCCEEEEEeCCC---------cEEEEECCCCCCCCCCCCCccceEEecc----
Q 010748          341 ISTHSGFK----WAVAADVESLAWDPHAEHSFVVSLEDG---------TIKGFDIRTAKSDPDSTSQQSSFTLHAH----  403 (502)
Q Consensus       341 ~~~~~~~~----~~~~~~v~~v~~~~~~~~~~~~~~~dg---------~v~i~d~~~~~~~~~~~~~~~~~~~~~h----  403 (502)
                      +..-....    ......-....+..+ ..+++.|+.+|         .+..||..+.         ........+    
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~-~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~---------~w~~~~~~~~~~~  392 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSD-NHAWLFGWKKGSVFQAGPSTAMNWYYTSGS---------GDVKSAGKRQSNR  392 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTT-CSCCEEECGGGCEEECCSSSEEEEEECSTT---------CEEEEEEECEETT
T ss_pred             CCcceeCCCccccccccccccceeecC-CceEEEECCCCcEEEecCccceeeeecCCc---------ceeecCCcccccc
Confidence            64311100    000000000112222 23455555444         4677887764         111111111    


Q ss_pred             -----CCCeeEEEEcCCCCCEEEEEeCCC-----------cEEEEECCCCCeeEEEEecCCCCcE-EEEEEcCCCCcEEE
Q 010748          404 -----DKAVCTISYNPLVPNLLATGSTDK-----------MVKLWDLSNNQPSCIASRNPKAGAV-FSVAFSEDSPFVLA  466 (502)
Q Consensus       404 -----~~~v~~l~~sp~~~~~l~t~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~v-~~~~~spd~~~ll~  466 (502)
                           ...-.++.|...+..+++.|+.++           .|.+||..+.....+..-....... .++...|++. +++
T Consensus       393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~v  471 (656)
T 1k3i_A          393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFI  471 (656)
T ss_dssp             EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EEE
T ss_pred             ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC-EEE
Confidence                 112344445443447888887542           5788888877643332001122222 3456778888 788


Q ss_pred             EEeCC-----------CcEEEEECCCCc
Q 010748          467 IGGSK-----------GKLEIWDTLSDA  483 (502)
Q Consensus       467 sg~~d-----------g~i~vwd~~~~~  483 (502)
                      .||.+           ..+.+||..+++
T Consensus       472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          472 TGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             ECCcccCcCcCCCCcccceEEEcCCCCc
Confidence            88854           468999987654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.22  E-value=2.3e-05  Score=70.59  Aligned_cols=172  Identities=8%  Similarity=0.018  Sum_probs=111.5

Q ss_pred             eeeEeeccCCC--CeEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          300 KCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       300 ~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      +.+.++. |..  ..+.|.|+ ++ .++.+.+.+|  .|+++|+.+++.... .............+.+..++++.-.++
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~-~~l~~~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQ-IELGKRYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEec-CCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEE-EecCCccceeEEEEeCCEEEEEEeeCC
Confidence            3556664 443  35889998 55 7777777766  899999999886653 334444433222233455666666789


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC---CcE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA---GAV  452 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~v  452 (502)
                      .+.+||..+.         +.+.++.... .-..++  +++..++++ ...+.|.++|..+.+...........   ..+
T Consensus       108 ~v~v~D~~t~---------~~~~ti~~~~-eG~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A          108 LGFVWNIRNL---------RQVRSFNYDG-EGWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPEL  174 (262)
T ss_dssp             EEEEEETTTC---------CEEEEEECSS-CCCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred             EEEEEECccC---------cEEEEEECCC-CceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence            9999999987         5666666432 223444  455344444 44778999999988753333332211   335


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      +.+.|. +|. +++..-.+..|.+.|..+++.+..+-.
T Consensus       175 NELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          175 NELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             EEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             ceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEEC
Confidence            567776 665 676666688999999999998766543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=0.0043  Score=66.32  Aligned_cols=203  Identities=11%  Similarity=0.060  Sum_probs=123.9

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~  339 (502)
                      ..|.++...++ + .|..|+..+-|..||..+++......       .....|.++...+++ . |..|+.. -|.+||.
T Consensus       163 ~~i~~i~~d~~-g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lwigt~~-Gl~~~d~  237 (781)
T 3v9f_A          163 EQTWTATEAED-G-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG-N-IWIGTSK-GLALFNA  237 (781)
T ss_dssp             CCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC-C-EEEEETT-EEEEEET
T ss_pred             cceEEEEECCC-C-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC-C-EEEEeCC-cHheECC
Confidence            45888887766 3 45556766569999988775433211       113568899888877 4 4445555 6888998


Q ss_pred             CCCCCccceE-------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE-------EeccCC
Q 010748          340 RISTHSGFKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-------LHAHDK  405 (502)
Q Consensus       340 ~~~~~~~~~~-------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-------~~~h~~  405 (502)
                      .+........       .....|.++...+++  .+.+|+..+-|.+++..+.......  ......       ......
T Consensus       238 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~l~~~  313 (781)
T 3v9f_A          238 NTETFTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPE--QIRFEFIREGDNNYSLSNA  313 (781)
T ss_dssp             TTTEEEC-----------CCCCEEEEEECTTS--EEEEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSS
T ss_pred             CCCcEEEEEcCCCccccccCceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeee--ccccccccCCCCCCCCCCC
Confidence            7654332111       123568888888754  5778887667889998765210000  000000       012345


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-------ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-------RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .|.++...+++  .|-.|+.++-|..|+...........       .......|.++...+++.  |-.|+.++.|..|+
T Consensus       314 ~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~  389 (781)
T 3v9f_A          314 SARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFE  389 (781)
T ss_dssp             CEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEE
T ss_pred             eEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEE
Confidence            68899888876  35567767779999987665322211       111235699999999887  44567666799998


Q ss_pred             CCCC
Q 010748          479 TLSD  482 (502)
Q Consensus       479 ~~~~  482 (502)
                      ..++
T Consensus       390 ~~~~  393 (781)
T 3v9f_A          390 NGKR  393 (781)
T ss_dssp             TTEE
T ss_pred             CCCC
Confidence            7654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.21  E-value=0.0018  Score=66.95  Aligned_cols=206  Identities=11%  Similarity=0.062  Sum_probs=136.5

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      ..+..|+|.+..+.++.+-...+.|..+++........+.........|++.+.+.+++++-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            45789999998666666767788999999875543333332234577888887765666776778899999987654332


Q ss_pred             ceEeecCCeeEEEeCCCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          347 FKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      .....-.....++++|....++++- +..+.|...++...          ....+...-.....|++++.+..+.++-..
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~----------~~~~l~~~~~~P~GlalD~~~~~LY~aD~~  186 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS----------ERTTLVPNVGRANGLTIDYAKRRLYWTDLD  186 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------SCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC----------ceEEEECCCCCcceEEEccccCEEEEEECC
Confidence            2223334578999998655444443 23567888877643          222333345567899999976466666666


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .+.|..+++.......+.   ........+++..+  +++.+-...+.|...|..++.....
T Consensus       187 ~~~I~~~d~dG~~~~v~~---~~l~~P~glav~~~--~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          187 TNLIESSNMLGLNREVIA---DDLPHPFGLTQYQD--YIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             TTEEEEEETTSCSCEEEE---ECCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CCEEEEEcCCCCceEEee---ccCCCceEEEEECC--EEEEecCCCCEEEEEECCCCCceEE
Confidence            788999999776542222   22344668888663  3677766688999999877765443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=0.00025  Score=69.98  Aligned_cols=205  Identities=7%  Similarity=0.099  Sum_probs=114.1

Q ss_pred             ccceeeEEeccCCCcEEEEEecCC----cEEEEeCCCCeee--EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 010748          266 TDSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg----~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~  339 (502)
                      ......|+|++++..++++....+    .+.+.+ ..+...  ..+.. ......++++|.+..++++-...+.|..++.
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            355789999999543444443222    233344 333221  22221 2345678899944377777777889999998


Q ss_pred             CCCCCccceEee--cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc--------------
Q 010748          340 RISTHSGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--------------  403 (502)
Q Consensus       340 ~~~~~~~~~~~~--~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h--------------  403 (502)
                      ....... ....  ......++|+|++..++++-...+.|..++.......     ......+.+.              
T Consensus       256 ~~~~~~~-~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~-----~~~~~~~ag~~g~~g~~dg~~~~a  329 (430)
T 3tc9_A          256 TTQETTP-LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR-----LTTPYIVCGQQGAKDWVDGVGKKA  329 (430)
T ss_dssp             TTTEEEE-EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-----ECCCEEEEECTTCBCCBCEEGGGC
T ss_pred             CCCcEEE-EEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc-----ccceEEEeccCCCCCCCCCCCcce
Confidence            7654321 1222  2357789999988756666677888999876532000     0001111111              


Q ss_pred             -CCCee-EEEEc--------CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-----cC----------CCCcEEEEEEc
Q 010748          404 -DKAVC-TISYN--------PLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----NP----------KAGAVFSVAFS  458 (502)
Q Consensus       404 -~~~v~-~l~~s--------p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-----~~----------~~~~v~~~~~s  458 (502)
                       -.... .++..        +.+ .++++-...+.|+.++. .+....+...     .+          .......++++
T Consensus       330 ~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd  407 (430)
T 3tc9_A          330 RMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYD  407 (430)
T ss_dssp             BBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEE
T ss_pred             EeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEE
Confidence             01122 44443        223 55555556678888884 4443222221     00          01257899999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECC
Q 010748          459 EDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       459 pd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      |++..|+++-..+..|+.+++.
T Consensus       408 ~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          408 EERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCEEEEEECCCCeEEEEccC
Confidence            9544467766667788887753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.18  E-value=0.00036  Score=62.21  Aligned_cols=184  Identities=12%  Similarity=0.090  Sum_probs=111.8

Q ss_pred             CCCcceeeeecCCCCCCCCCCEEEEecCC--CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc
Q 010748          190 PAFPLCMAWLDCPLKDREKGNFMAVGSME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD  267 (502)
Q Consensus       190 ~~~~~~~~~~~~~~~~s~~~~~la~g~~d--g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  267 (502)
                      .+|...+.+       ++ +.+..+.+..  ..|+++|+.+++.+....+                         ..+. 
T Consensus        20 ~~ftqGL~~-------~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-------------------------~~~~-   65 (243)
T 3mbr_X           20 TAFTEGLFY-------LR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-------------------------PPPY-   65 (243)
T ss_dssp             TCCEEEEEE-------ET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-------------------------CTTC-
T ss_pred             ccccccEEE-------EC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-------------------------CCCc-
Confidence            344455655       23 5555666654  4899999987654432211                         0110 


Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      ---.+++.  +..+....-.++.+.+||..+.+.+.++.... .-..++  +++ ..|+.+..++.|.++|..+.+....
T Consensus        66 fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~~~  139 (243)
T 3mbr_X           66 FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALT--SDD-SHLYMSDGTAVIRKLDPDTLQQVGS  139 (243)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECS-SCEEEECSSSEEEEECTTTCCEEEE
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCC-CEEEEECCCCeEEEEeCCCCeEEEE
Confidence            01223333  34455566678999999999999999987433 234555  455 4455556689999999998775543


Q ss_pred             eEeec-----CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-------------cCCCeeE
Q 010748          348 KWAVA-----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-------------HDKAVCT  409 (502)
Q Consensus       348 ~~~~~-----~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~  409 (502)
                      .....     ..++.+.|..  ..+++....+..|.+.|.+++         +.+..+..             ...-.+.
T Consensus       140 I~V~~~g~~~~~lNeLe~~~--G~lyanvw~s~~I~vIDp~tG---------~V~~~idl~~l~~~~~~~~~~~~~vlNG  208 (243)
T 3mbr_X          140 IKVTAGGRPLDNLNELEWVN--GELLANVWLTSRIARIDPASG---------KVVAWIDLQALVPDADALTDSTNDVLNG  208 (243)
T ss_dssp             EECEETTEECCCEEEEEEET--TEEEEEETTTTEEEEECTTTC---------BEEEEEECGGGSTTTTSCCCTTSSCEEE
T ss_pred             EEEccCCcccccceeeEEeC--CEEEEEECCCCeEEEEECCCC---------CEEEEEECCcCccccccccCCcCCceEE
Confidence            22111     2455666662  335555556788999999987         33333321             1235689


Q ss_pred             EEEcCCCCCEEEEEe
Q 010748          410 ISYNPLVPNLLATGS  424 (502)
Q Consensus       410 l~~sp~~~~~l~t~s  424 (502)
                      |+++|.+.++++||-
T Consensus       209 IA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          209 IAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEETTTTEEEEEET
T ss_pred             EEEcCCCCEEEEECC
Confidence            999998756666653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.12  E-value=0.0059  Score=59.47  Aligned_cols=210  Identities=10%  Similarity=-0.029  Sum_probs=125.5

Q ss_pred             CCcceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccce
Q 010748          191 AFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       191 ~~~~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  269 (502)
                      ..|..++|       ++. +.++.+-...+.|+.++++......                       .............
T Consensus       112 ~~~~~l~~-------d~~~~~lywsD~~~~~I~~~~~~g~~~~~-----------------------~~~~~~~~~~~~p  161 (400)
T 3p5b_L          112 RNVVALDT-------EVASNRIYWSDLSQRMICSTQLDRAHGVS-----------------------SYDTVISRDIQAP  161 (400)
T ss_dssp             SCEEEEEE-------ETTTTEEEEEETTTTEEEEEEC------C-----------------------CCEEEECSSCSCE
T ss_pred             CcceEEee-------eeccCceEEEecCCCeEEEEEcccCCCCC-----------------------cceEEEeCCCCCc
Confidence            34566776       443 5555555567888888886421100                       0000111123457


Q ss_pred             eeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCccce
Q 010748          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFK  348 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~  348 (502)
                      ..|++.+.+++++++-...+.|.+.++........+...-.....|++.|.+..++++-.. .+.|...++.........
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            7888887656677777778899999987654444444344568899999977344444423 478888888754433222


Q ss_pred             EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ...-.....|++++.+..++++-...+.|..+|+....       ...+......-....++++..  ..++++-...+.
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-------~~~~~~~~~~l~~P~gl~v~~--~~lywtd~~~~~  312 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-------RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEA  312 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-------CEEEEECSSTTSSEEEEEEET--TEEEEEESSSCS
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-------cEEEEeCCCCCCCCEEEEEeC--CEEEEecCCCCe
Confidence            12235678899998777566665677889999986531       011111111223455677643  367777777788


Q ss_pred             EEEEECCCCCe
Q 010748          429 VKLWDLSNNQP  439 (502)
Q Consensus       429 i~vwd~~~~~~  439 (502)
                      |..++..+++.
T Consensus       313 V~~~~~~~G~~  323 (400)
T 3p5b_L          313 IFSANRLTGSD  323 (400)
T ss_dssp             EEEEESSSCCC
T ss_pred             EEEEEcCCCCc
Confidence            99999766653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.12  E-value=0.0012  Score=67.64  Aligned_cols=138  Identities=15%  Similarity=0.123  Sum_probs=85.7

Q ss_pred             cEEEEeCCCCeeeEeecc--C--------CCCeEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCccceEeec-----
Q 010748          290 QVKIWDVAAGKCNLTLEH--H--------TDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVA-----  352 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~--h--------~~~v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----  352 (502)
                      .|..+|..+|+.+..++.  |        ..++. +....++.  .+++.++.+|.+.++|..+++.........     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            599999999998887753  2        12222 22223442  357788899999999998876532111000     


Q ss_pred             --------CCe--------------------------eEEEeCCCCCCEEEEEe--------------------------
Q 010748          353 --------ADV--------------------------ESLAWDPHAEHSFVVSL--------------------------  372 (502)
Q Consensus       353 --------~~v--------------------------~~v~~~~~~~~~~~~~~--------------------------  372 (502)
                              .++                          ..++++|... ++++..                          
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-EEEEEchhccccccccccccccCCccccccce
Confidence                    001                          2356777655 455443                          


Q ss_pred             -----------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          373 -----------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       373 -----------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                                 ..|.|..||+.++         +.+++..... .+.+..+...+ .+++.++.|+.|+.||..+++..
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG---------~~~W~~~~~~-~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTG---------KAKWTKWEKF-AAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTC---------CEEEEEEESS-CCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             eccCccccCCCCCCeEEEEECCCC---------CEEEEecCCC-CccceeEEECC-CEEEEEcCCCeEEEEECCCCCEE
Confidence                       3478999999886         5666665332 22222222234 67778999999999999999843

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.08  E-value=0.0027  Score=59.70  Aligned_cols=203  Identities=11%  Similarity=-0.013  Sum_probs=125.0

Q ss_pred             cceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee
Q 010748          193 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      +..+.|       .+ ++.++.+-...+.|..++++.......                          .....-.....
T Consensus        37 ~~~ld~-------d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--------------------------~~~~~l~~p~g   83 (318)
T 3sov_A           37 AAAVDF-------VFSHGLIYWSDVSEEAIKRTEFNKTESVQN--------------------------VVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEE-------EGGGTEEEEEETTTTEEEEEETTSSSCCCE--------------------------EEEECCSCCCE
T ss_pred             cEEEEE-------EeCCCEEEEEECCCCcEEEEEccCCCceEE--------------------------EEcCCCCCccE
Confidence            456677       34 355666666678899998875321110                          00011234667


Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCccceEe
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~  350 (502)
                      |++.+.+++++++-...+.|.++++........+.........+++.|.+..++.+-. ..+.|..+++...........
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            8888765767777777789999998754333333334456789999987634444432 357788888765432221111


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      .-.....++|++.+..++++-+..+.|..+++...         ..............++++..  ..++.+-...+.|.
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~---------~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~  232 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---------NRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSIL  232 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEE
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC---------ceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEE
Confidence            22456889999977766666677889999998743         11111222334556777753  36677766778899


Q ss_pred             EEECCCCCe
Q 010748          431 LWDLSNNQP  439 (502)
Q Consensus       431 vwd~~~~~~  439 (502)
                      .++..+++.
T Consensus       233 ~~~~~~G~~  241 (318)
T 3sov_A          233 ACNKYTGEG  241 (318)
T ss_dssp             EEETTTCCS
T ss_pred             EEECCCCCc
Confidence            999876653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.07  E-value=0.00095  Score=65.86  Aligned_cols=205  Identities=8%  Similarity=0.093  Sum_probs=114.5

Q ss_pred             ccceeeEEeccCCCcEEEEEecC---Cc-EEEEeCCCCee-eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          266 TDSVLGLAWNKEFRNILASASAD---KQ-VKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~d---g~-v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      .....+|+|++++. ++++....   .. +...+...+.. ...+. .-.....++++|.+..++++-..++.|+.++..
T Consensus       181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            34588999999955 55554321   11 33333222111 01121 223456788999443666666678889999987


Q ss_pred             CCCCccceEee--cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc---------------
Q 010748          341 ISTHSGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------  403 (502)
Q Consensus       341 ~~~~~~~~~~~--~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h---------------  403 (502)
                      ++.........  ......++|+|++..++++-...+.|+.++.......     ......+.+.               
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~-----~~~~~~~ag~~g~~g~~dg~~~~a~  333 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK-----LAVPYIVCGQHSSPGWVDGMGTGAR  333 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC-----BCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc-----cCcEEEEEecCCCCccCCCcccceE
Confidence            65542222221  1223469999988656666667789999886532100     0011111111               


Q ss_pred             CCCeeEEEE---------cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC---------------CCCcEEEEEEc-
Q 010748          404 DKAVCTISY---------NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP---------------KAGAVFSVAFS-  458 (502)
Q Consensus       404 ~~~v~~l~~---------sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~---------------~~~~v~~~~~s-  458 (502)
                      -.....+++         .+.+ .++++-...+.|+.++. ++....+.-...               .......|+++ 
T Consensus       334 ~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~  411 (433)
T 4hw6_A          334 LWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM  411 (433)
T ss_dssp             CSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred             EcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence            123566888         5655 66666667788999985 443222221100               01246789999 


Q ss_pred             CCCCcEEEEEeCCCcEEEEECC
Q 010748          459 EDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       459 pd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      +++. ++++=..+++|+.+++.
T Consensus       412 ~~g~-lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          412 KRKC-FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTE-EEEEEGGGTEEEEEEEC
T ss_pred             CCCE-EEEEeCCCCEEEEEecC
Confidence            5555 56666667788887763

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.05  E-value=0.0009  Score=62.88  Aligned_cols=195  Identities=11%  Similarity=0.169  Sum_probs=122.2

Q ss_pred             CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCC---Cc---EEEEEeC---CCcEEEEecC--CCCCccc
Q 010748          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQ---ILLSGSF---DRSVVMKDAR--ISTHSGF  347 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~---~l~s~s~---dg~i~iwd~~--~~~~~~~  347 (502)
                      ..+++.....+-+.+||+ +|+.++.+..  +.+..+...|.-   ..   ++++...   +++|++|++.  +......
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            346666677788999999 8888888863  567777776621   01   3344443   5789999773  3221111


Q ss_pred             e-----Eeec-CCeeEEEe--CCCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          348 K-----WAVA-ADVESLAW--DPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       348 ~-----~~~~-~~v~~v~~--~~~~~-~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      .     .... ..+..+|+  +|... .++++...+|.+..|++.......  ...+.+.++.. .+.+-.+...+.. .
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~--~~~~lVR~f~l-gsq~EgcvvDd~~-g  192 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY--ISGKKVRAFKM-NSQTEGMAADDEY-G  192 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC--EEEEEEEEEEC-SSCEEEEEEETTT-T
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc--ccceEEEEecC-CCCcceEEEcCCC-C
Confidence            0     0111 45566777  77543 468888889999999985321100  00245566554 3567888888876 7


Q ss_pred             EEEEEeCCCcEEEEECCCC---CeeEEEEec-CC-CCcEEEEEE--cCCCC-cEEEEEeCCCcEEEEECC
Q 010748          419 LLATGSTDKMVKLWDLSNN---QPSCIASRN-PK-AGAVFSVAF--SEDSP-FVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~---~~~~~~~~~-~~-~~~v~~~~~--spd~~-~ll~sg~~dg~i~vwd~~  480 (502)
                      .|+.+-.+..|..++....   ....+.... ++ ...+..|++  .++++ |+|+++-.+.++.|||..
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            8999999877777775422   122333332 22 236888888  45555 777777677899999997

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.03  E-value=0.0033  Score=64.49  Aligned_cols=163  Identities=14%  Similarity=0.160  Sum_probs=95.8

Q ss_pred             CcEEEEeCCCCeeeEeecc--CC--------CCeEEEEEc-CCCC--cEEEEEeCCCcEEEEecCCCCCccceEeec---
Q 010748          289 KQVKIWDVAAGKCNLTLEH--HT--------DKVQAVAWN-HHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVA---  352 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~--h~--------~~v~~l~~~-~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---  352 (502)
                      +.|..+|+.+|+.+..++.  |.        .++. +... .++.  .+++.++.+|.++++|.++++.+.......   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5899999999999888753  32        1222 2221 3442  378889999999999998876532111000   


Q ss_pred             ---------C---------------------------------CeeEEEeCCCCCCEEEEEe------------------
Q 010748          353 ---------A---------------------------------DVESLAWDPHAEHSFVVSL------------------  372 (502)
Q Consensus       353 ---------~---------------------------------~v~~v~~~~~~~~~~~~~~------------------  372 (502)
                               +                                 .-..++++|... ++++..                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence                     0                                 001345666544 343322                  


Q ss_pred             ---------------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          373 ---------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       373 ---------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                                     ..|.|..||+.++         +.+++...+. ++..-.....+ .+++.++.|+.++.||.+++
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG---------~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG  517 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVSG---------KVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSG  517 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTTC---------CEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTC
T ss_pred             ceeccceeecCCCCCCcceEEEEECCCC---------CEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCC
Confidence                           2578899999887         5666665432 22221112223 68888999999999999999


Q ss_pred             CeeEEEEecCCCCcE-EEEEEcCCCCcEEE
Q 010748          438 QPSCIASRNPKAGAV-FSVAFSEDSPFVLA  466 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v-~~~~~spd~~~ll~  466 (502)
                      +.  +..+....+.+ .-+.|..+|+..++
T Consensus       518 ~~--lW~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          518 KE--LWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             CE--EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CE--EEEecCCCCcccCceEEEECCEEEEE
Confidence            84  44443322211 12556667753333

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.98  E-value=0.0014  Score=64.71  Aligned_cols=200  Identities=7%  Similarity=0.084  Sum_probs=119.1

Q ss_pred             cceeeEEeccC--CCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC---C-cEEEEecC
Q 010748          267 DSVLGLAWNKE--FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---R-SVVMKDAR  340 (502)
Q Consensus       267 ~~V~~l~~~~~--~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g-~i~iwd~~  340 (502)
                      ....+|+|.|+  .+ .|+.+...+.|+.+++.+++...... .......|+|++++ +++++....   . .+..++..
T Consensus       139 ~~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             SCCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGG
T ss_pred             CCCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECC
Confidence            34678999984  34 45455444899999998877654433 45568999999999 555544321   1 23333332


Q ss_pred             CCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-e-ccCCCeeEEEEcCCCCC
Q 010748          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-H-AHDKAVCTISYNPLVPN  418 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~-~h~~~v~~l~~sp~~~~  418 (502)
                      .................++++|....++++-..++.|+.++..++         .....+ . .....-..++|+|++..
T Consensus       216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g---------~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG---------TLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC---------CEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC---------eEEEEEeccCCCCCcccEEEeCCCCE
Confidence            221111122234556778899954556666667788999998754         221111 1 11223346999999833


Q ss_pred             EEEEEeCCCcEEEEECCC--CCe---eEEEEecC------------CCCcEEEEEE---------cCCCCcEEEEEeCCC
Q 010748          419 LLATGSTDKMVKLWDLSN--NQP---SCIASRNP------------KAGAVFSVAF---------SEDSPFVLAIGGSKG  472 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~--~~~---~~~~~~~~------------~~~~v~~~~~---------spd~~~ll~sg~~dg  472 (502)
                      ++++-...+.|+.+++..  +..   ..+....+            .......+++         .+++. ++++-...+
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~  365 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSH  365 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTT
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCC
Confidence            666666678899988653  221   11111101            1124677999         67776 566666678


Q ss_pred             cEEEEEC
Q 010748          473 KLEIWDT  479 (502)
Q Consensus       473 ~i~vwd~  479 (502)
                      +|+.++.
T Consensus       366 ~I~~~~~  372 (433)
T 4hw6_A          366 TVRVLTP  372 (433)
T ss_dssp             EEEEECT
T ss_pred             EEEEECC
Confidence            8999885

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.95  E-value=0.0025  Score=65.87  Aligned_cols=208  Identities=9%  Similarity=0.082  Sum_probs=128.9

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee-eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      ..+..|+|++.++.++.+-...+.|..+++..... ...+...-.....|++.+.+.+++++-...+.|.+.++......
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            45789999987565555655678899999875532 22333333578899999977567777777899999999865443


Q ss_pred             cceEeecCCeeEEEeCCCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748          346 GFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~~~~~~~~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ......-.....++++|.+..++++-. ..+.|...++...         .........-...+.|++++....+.++-+
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---------~~~~l~~~~~~~P~Glald~~~~~LY~aD~  190 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SRFIIINSEIYWPNGLTLDYEEQKLYWADA  190 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSSEEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---------ceEEEEeCCCCCCcEEEEEccCCEEEEEeC
Confidence            322233445778999987664445442 2466777776532         111222223456789999987646666666


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ..+.|..+++.......+..  ........+++..+  +++.+-...+.|...|..+++.+..
T Consensus       191 ~~~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          191 KLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             TTCCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             CCCeEEEecCCCCccEEEEe--CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence            67889999987654322222  11222356777766  4677666778899999888765543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.0014  Score=64.52  Aligned_cols=157  Identities=11%  Similarity=0.155  Sum_probs=98.8

Q ss_pred             cceeeEEecc-CCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC-CC----cEEEEecC
Q 010748          267 DSVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DR----SVVMKDAR  340 (502)
Q Consensus       267 ~~V~~l~~~~-~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg----~i~iwd~~  340 (502)
                      .....|+|+| +.+ .|+.+...+.|+.+|+..++...... .......|+|++++ ++|+++.. ++    .+.+++..
T Consensus       137 ~~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          137 GGAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             SCCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEeCC
Confidence            3567899997 434 45555554889999998776544433 45668899999999 64444443 22    23334433


Q ss_pred             CCCCc-cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCc-cceEEeccCCCeeEEEEcCCCCC
Q 010748          341 ISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ-SSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       341 ~~~~~-~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                       .... ............++++|.+..++++-...+.|+.|+.....        . .+... ........++|+|++..
T Consensus       214 -g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~--------~~~~~~~-~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          214 -SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE--------TTPLFTI-QDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             -GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE--------EEEEEEC-SSSSCCEEEEECTTSSE
T ss_pred             -CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--------EEEEEEc-CCCCcceeEEEcCCCCE
Confidence             2222 11222345577889999555566677778899999987541        1 11111 12234678999999833


Q ss_pred             EEEEEeCCCcEEEEECCC
Q 010748          419 LLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~  436 (502)
                      ++++-...+.|..++...
T Consensus       284 lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEETTTTEEEEEEEET
T ss_pred             EEEEECCCCEEEEEeCCc
Confidence            666666778899987653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.93  E-value=0.0025  Score=63.30  Aligned_cols=212  Identities=8%  Similarity=0.076  Sum_probs=119.7

Q ss_pred             cceeeEEe-------ccCCCcEEEEEecCC------cEEEEeCCC-Ceee-----EeeccCCCCeEEEEEcCCCCcEEEE
Q 010748          267 DSVLGLAW-------NKEFRNILASASADK------QVKIWDVAA-GKCN-----LTLEHHTDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       267 ~~V~~l~~-------~~~~~~~l~sgs~dg------~v~vwd~~~-~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s  327 (502)
                      .....|+|       ++++..++++...++      .|.+.+... +...     ..+... .....++.+|.+..++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence            46889999       999553444443332      266665333 2221     122211 234577889966577777


Q ss_pred             EeCCCcEEEEecC-------CCCC-----------ccceEee--cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCC
Q 010748          328 GSFDRSVVMKDAR-------ISTH-----------SGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS  387 (502)
Q Consensus       328 ~s~dg~i~iwd~~-------~~~~-----------~~~~~~~--~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~  387 (502)
                      -..++.|..+|+.       ++..           .......  ......++|+|++..++++-+....|+.++......
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~  344 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK  344 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence            7788899999997       4443           0011222  244678999998864455556778898866543210


Q ss_pred             CCCCCCCccceEEecc---C------------CCee-EEEEc-------CCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          388 DPDSTSQQSSFTLHAH---D------------KAVC-TISYN-------PLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       388 ~~~~~~~~~~~~~~~h---~------------~~v~-~l~~s-------p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      .     ......+.+.   .            .... .++..       +.+ .++++-...+.|+.++. ++....+.-
T Consensus       345 ~-----~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~-~G~v~TiaG  417 (496)
T 3kya_A          345 E-----FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTP-EGIVSTYAG  417 (496)
T ss_dssp             E-----ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECT-TCBEEEEEE
T ss_pred             e-----ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeC-CCCEEEEec
Confidence            0     0000112111   0            1223 44443       334 66666667788999984 454322221


Q ss_pred             ec-----------C----------CCCcEEEEEEcCC-CCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          445 RN-----------P----------KAGAVFSVAFSED-SPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       445 ~~-----------~----------~~~~v~~~~~spd-~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ..           +          .-.....|+++++ +. |+++=..+.+|+.+++....++..
T Consensus       418 ~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          418 RGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             SCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC----
T ss_pred             ccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCccccc
Confidence            10           1          1124678999997 65 666666778999999988776654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.92  E-value=0.0047  Score=55.71  Aligned_cols=203  Identities=13%  Similarity=0.159  Sum_probs=120.3

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCC--cceeeeecCCCCCCCCCCEEEEecC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      .++..+++.|++..|.+.....    -.|+.++...    .+..  ..++..+  +=.+++       .+++.++++.-.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~----~~I~~ld~~g----~v~~--~i~l~g~~D~EGIa~-------~~~g~~~vs~E~   89 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKP----AAIVEMTTNG----DLIR--TIPLDFVKDLETIEY-------IGDNQFVISDER   89 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETT----EEEEEEETTC----CEEE--EEECSSCSSEEEEEE-------CSTTEEEEEETT
T ss_pred             cCcceeEEeCCCCEEEEEECCC----CeEEEEeCCC----CEEE--EEecCCCCChHHeEE-------eCCCEEEEEECC
Confidence            4689999999988777766553    2788888763    2221  1122211  123333       466777666656


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      ++.+.++++...........                  .........+....-.|+|+|.+. .|+++.......||.+.
T Consensus        90 ~~~l~~~~v~~~~~i~~~~~------------------~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           90 DYAIYVISLTPNSEVKILKK------------------IKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             TTEEEEEEECTTCCEEEEEE------------------EECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEE
T ss_pred             CCcEEEEEcCCCCeeeeeee------------------eccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEc
Confidence            68888988864322110000                  000000113455689999999854 55555554455555543


Q ss_pred             ---CCeeeEee-------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec----------CCeeE
Q 010748          298 ---AGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA----------ADVES  357 (502)
Q Consensus       298 ---~~~~~~~~-------~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~~v~~  357 (502)
                         ..+.+..+       ..+...+.+++++|...++++.+...+.|..+|.... ... .....          .....
T Consensus       151 g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~-~~~L~~g~~~l~~~~~qpEG  228 (255)
T 3qqz_A          151 GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIG-EMSLTKGSRGLSHNIKQAEG  228 (255)
T ss_dssp             STTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEE-EEECSTTGGGCSSCCCSEEE
T ss_pred             ccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEE-EEEcCCccCCcccccCCCCe
Confidence               11112222       1134467899999998788888888899999997754 222 22222          36789


Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEEC
Q 010748          358 LAWDPHAEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~dg~v~i~d~  382 (502)
                      |+|.++|.  +++.++.+.++.|.-
T Consensus       229 ia~d~~G~--lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          229 VAMDASGN--IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEECTTCC--EEEEETTTEEEEEEC
T ss_pred             eEECCCCC--EEEEcCCceEEEEEe
Confidence            99999874  555577776666643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.89  E-value=0.0038  Score=66.16  Aligned_cols=161  Identities=11%  Similarity=-0.014  Sum_probs=102.3

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHS  345 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~  345 (502)
                      .....|++.+.+++++++-...+.|.+.++........+...-.....|++.|.++.++++-... +.|...++......
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            45678888887677777777889999999875544333333445688999999863544444333 67888888654433


Q ss_pred             cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEEEcCCCCCEEEEE
Q 010748          346 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ......-.....|++++.+..++++-...+.|..+++...         .....+..  .-....+|++..  ..++++-
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~---------~~~~v~~~~~~l~~P~glav~~--~~lYwtD  619 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---------NRKTILEDEKRLAHPFSLAVFE--DKVFWTD  619 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEEECTTTTSSEEEEEEET--TEEEEEE
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC---------ceEEEecCCCccCCCCEEEEeC--CEEEEEE
Confidence            2222223468889999877655555566778999998653         11122222  122345666643  3566666


Q ss_pred             eCCCcEEEEECCCCC
Q 010748          424 STDKMVKLWDLSNNQ  438 (502)
Q Consensus       424 s~dg~i~vwd~~~~~  438 (502)
                      ...+.|...+..+++
T Consensus       620 ~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          620 IINEAIFSANRLTGS  634 (791)
T ss_dssp             TTTTEEEEEETTTCC
T ss_pred             CCCCEEEEEeCCCCc
Confidence            667888888876654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.85  E-value=0.00016  Score=76.09  Aligned_cols=162  Identities=10%  Similarity=-0.016  Sum_probs=99.0

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCcc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSG  346 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~  346 (502)
                      ....|++.+.+++++++-...+.|.++++........+.........|++.|.+..++++-... +.|..+++.......
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~  533 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  533 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE
Confidence            3556788765566666666678999999875544333333334567889999764555544333 678887776433222


Q ss_pred             ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC
Q 010748          347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      .....-.....|+|+|.+..++++-+..+.|..+++....       ...+......-....+|++..  ..++++....
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-------~~~~~~~~~~~~~P~glavd~--~~lywtd~~~  604 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-------RKTILEDEKRLAHPFSLAVFE--DKVFWTDIIN  604 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-------CEEECCCSSSCSSCCCCEEET--TEEEEECSTT
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-------eEEEEecCCcCCCceEeEEEC--CEEEEEeCCC
Confidence            1111224467899999877777777778899999986431       011111111122344556654  2566676677


Q ss_pred             CcEEEEECCCCC
Q 010748          427 KMVKLWDLSNNQ  438 (502)
Q Consensus       427 g~i~vwd~~~~~  438 (502)
                      +.|..++..+++
T Consensus       605 ~~V~~~d~~~G~  616 (699)
T 1n7d_A          605 EAIFSANRLTGS  616 (699)
T ss_dssp             TCEEEEETTTEE
T ss_pred             CeEEEEEccCCC
Confidence            889999987765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=0.0058  Score=60.67  Aligned_cols=218  Identities=12%  Similarity=0.073  Sum_probs=124.6

Q ss_pred             ceeeEEecc-CCCcEEEEEecCCcEEEEeCCCCeeeEeeccC---CCCeEEEEE-------cCCCCcEEEEEeCCC----
Q 010748          268 SVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLEHH---TDKVQAVAW-------NHHSPQILLSGSFDR----  332 (502)
Q Consensus       268 ~V~~l~~~~-~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h---~~~v~~l~~-------~~~~~~~l~s~s~dg----  332 (502)
                      ....|+|.| +.++++++....+.|++.|+.++.....+...   ......|+|       ++++ ..|+++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCCCCCcc
Confidence            467899998 44545555554577999999887765544321   235889999       9999 5455554443    


Q ss_pred             ---cEEEEecCC-CCCcc----ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECC-------CCCCCCC-----CC
Q 010748          333 ---SVVMKDARI-STHSG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR-------TAKSDPD-----ST  392 (502)
Q Consensus       333 ---~i~iwd~~~-~~~~~----~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~-------~~~~~~~-----~~  392 (502)
                         .|.+++... +....    ...........++.+|.+..++++-...+.|+.+|+.       ++.....     ..
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               266665333 12210    1222334567888999777777788888999999987       4421000     00


Q ss_pred             CCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CCe---eEEEEecCC------------CCcEE-E
Q 010748          393 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN--NQP---SCIASRNPK------------AGAVF-S  454 (502)
Q Consensus       393 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~--~~~---~~~~~~~~~------------~~~v~-~  454 (502)
                      ....+... ........|+|+|++..++++-+..+.|+.++...  +..   ..+.-..+.            ..... .
T Consensus       299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence            00011111 22344679999999832555556678899866533  221   112111111            11234 4


Q ss_pred             EEEc-------CCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748          455 VAFS-------EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       455 ~~~s-------pd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ++..       +++. ++++=..+.+|+.++. ++ .+.++.+
T Consensus       378 v~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G-~v~TiaG  417 (496)
T 3kya_A          378 VFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EG-IVSTYAG  417 (496)
T ss_dssp             EEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TC-BEEEEEE
T ss_pred             EEEccccccccCCCe-EEEEECCCCEEEEEeC-CC-CEEEEec
Confidence            4554       4555 5666667788999983 44 4444443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.76  E-value=0.0059  Score=56.84  Aligned_cols=203  Identities=10%  Similarity=0.037  Sum_probs=118.7

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEe-ecc----CC--CCeEEEEE---cCCCCcEEEEEe--------
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT-LEH----HT--DKVQAVAW---NHHSPQILLSGS--------  329 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~-~~~----h~--~~v~~l~~---~~~~~~~l~s~s--------  329 (502)
                      ---+++|.+..+.++++.-..++|..|+...+..... +.+    ..  ..+..|.|   .|.+ +++++..        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccccccccc
Confidence            3457899887454444444789999999876543332 322    11  14579999   5776 7777544        


Q ss_pred             -----CCCcEEEEecC---CCCCccceE--e-----------ecCCeeEEEeCCCCCCEEEEEeCC-CcEEEEECCCCCC
Q 010748          330 -----FDRSVVMKDAR---ISTHSGFKW--A-----------VAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKS  387 (502)
Q Consensus       330 -----~dg~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~v~~~~~~~~~~~~~~~d-g~v~i~d~~~~~~  387 (502)
                           .++.|..||+.   +++.....-  .           .......++..++|. ..++++.. +.|..++..... 
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~-  170 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKT-  170 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCC-
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCE-
Confidence                 26779999998   555432111  0           112477899999865 66667777 777666655320 


Q ss_pred             CCCCCCCccceEEe----ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-cC---CCCcEEEE-EEc
Q 010748          388 DPDSTSQQSSFTLH----AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-NP---KAGAVFSV-AFS  458 (502)
Q Consensus       388 ~~~~~~~~~~~~~~----~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-~~---~~~~v~~~-~~s  458 (502)
                             ...+-+.    ......+.|+++|++ ++|++....|.|..+|+.......+... .+   .......+ ..-
T Consensus       171 -------~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~  242 (334)
T 2p9w_A          171 -------VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVP  242 (334)
T ss_dssp             -------EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEE
T ss_pred             -------EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccc
Confidence                   1111111    112347799999998 6666665599999999985321012111 01   11123343 333


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCC
Q 010748          459 EDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       459 pd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      .+|.-+|++.+..+.+.+.+...
T Consensus       243 ~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          243 VGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             ETTEEEEEEEETTEEEEEECSST
T ss_pred             cCCEEEEEEcCCCCEEEEECCCC
Confidence            46664466666666655555433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.73  E-value=0.015  Score=55.44  Aligned_cols=240  Identities=11%  Similarity=0.114  Sum_probs=121.3

Q ss_pred             CcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee
Q 010748          192 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       192 ~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      .|..++|       .|+|+++++ ...|.|++++ + +. ..+..                    ... ...........
T Consensus        32 ~P~~ia~-------~pdG~l~V~-e~~g~I~~i~-~-g~-~~~~~--------------------~~~-v~~~g~~~p~g   79 (352)
T 2ism_A           32 VPWALAF-------LPDGGMLIA-ERPGRIRLFR-E-GR-LSTYA--------------------ELS-VYHRGESGLLG   79 (352)
T ss_dssp             CEEEEEE-------CTTSCEEEE-ETTTEEEEEE-T-TE-EEEEE--------------------ECC-CCCSTTCSEEE
T ss_pred             CceEEEE-------cCCCeEEEE-eCCCeEEEEE-C-CC-ccEee--------------------cce-EeecCCCCcee
Confidence            3556666       688985555 4569999988 3 11 11100                    000 11122356789


Q ss_pred             EEeccC---CCcEEEEEecC-----CcEEEEeCCCCe-----ee-Eeec---cCCCCeEEEEEcCCCCcEEEEEeC----
Q 010748          272 LAWNKE---FRNILASASAD-----KQVKIWDVAAGK-----CN-LTLE---HHTDKVQAVAWNHHSPQILLSGSF----  330 (502)
Q Consensus       272 l~~~~~---~~~~l~sgs~d-----g~v~vwd~~~~~-----~~-~~~~---~h~~~v~~l~~~~~~~~~l~s~s~----  330 (502)
                      |+|+|+   ++.++++-+..     +.|..|++..++     .+ ..+.   ........|+|.|++ .++++.+.    
T Consensus        80 ia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~  158 (352)
T 2ism_A           80 LALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYER  158 (352)
T ss_dssp             EEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCG
T ss_pred             EEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCC
Confidence            999997   45455444432     578888876431     11 2232   111233689999999 65555432    


Q ss_pred             ---------CCcEEEEecCCCC-----------CccceEeec-CCeeEEEeCCCCCCEEEEEeCCCcE------EEEECC
Q 010748          331 ---------DRSVVMKDARIST-----------HSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGTI------KGFDIR  383 (502)
Q Consensus       331 ---------dg~i~iwd~~~~~-----------~~~~~~~~~-~~v~~v~~~~~~~~~~~~~~~dg~v------~i~d~~  383 (502)
                               .|.|.-++....-           .....+... .....++|+|....++++-.....+      .+.-+.
T Consensus       159 ~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~  238 (352)
T 2ism_A          159 ELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV  238 (352)
T ss_dssp             GGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC
T ss_pred             ccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec
Confidence                     2456666654310           011122221 2366789999544455554333331      122222


Q ss_pred             CCCC-CC--------CCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee----EEEEecCCCC
Q 010748          384 TAKS-DP--------DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----CIASRNPKAG  450 (502)
Q Consensus       384 ~~~~-~~--------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~----~~~~~~~~~~  450 (502)
                      .+.. .+        ......++..+. +......++|. .+ .++++....+.|...++......    ....+....+
T Consensus       239 ~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~  315 (352)
T 2ism_A          239 PGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFG  315 (352)
T ss_dssp             TTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSC
T ss_pred             cCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCC
Confidence            2210 00        000013444443 33346778884 34 66666656677887777643310    0111112236


Q ss_pred             cEEEEEEcCCCCcEEEEE
Q 010748          451 AVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       451 ~v~~~~~spd~~~ll~sg  468 (502)
                      .+..+++.|||. ++++.
T Consensus       316 rp~~v~~~pdG~-lyv~~  332 (352)
T 2ism_A          316 RLREVQVGPDGA-LYVTT  332 (352)
T ss_dssp             CEEEEEECTTSC-EEEEE
T ss_pred             CeeEEEECCCCc-EEEEE
Confidence            789999999997 45544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.66  E-value=0.041  Score=51.81  Aligned_cols=195  Identities=10%  Similarity=0.050  Sum_probs=101.5

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEe-eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE-EecCCCCC
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-KDARISTH  344 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~i-wd~~~~~~  344 (502)
                      ..+..|.+.++ +.+++++ .+|.|..- ...|+.-.. ...+...+.++.+.+.+ .+++++ ..|.+.. .|-....-
T Consensus       122 ~~~~~i~~~~~-~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g-~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          122 GSPRLIKALGN-GSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVS-SRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             SCEEEEEEEET-TEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEE-TTSSEEEEECTTCSSC
T ss_pred             CCeEEEEEECC-CCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEE-CCCcEEEEeCCCCCce
Confidence            34677777665 4455554 45654321 122322222 23455678999999987 666555 4455443 33211111


Q ss_pred             ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEE
Q 010748          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ..........+..+.+.+++.  +++.+.+|.+++.....+..      ...+..- ..+...+.++.+.+.+ .+++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~G~t------W~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g  267 (327)
T 2xbg_A          197 EPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDNSEN------WGELLSPLRRNSVGFLDLAYRTPN-EVWLAG  267 (327)
T ss_dssp             EEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTEEEE------ECCCBCTTSSCCSCEEEEEESSSS-CEEEEE
T ss_pred             eECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCCCCe------eEeccCCcccCCcceEEEEecCCC-EEEEEe
Confidence            111112345678888888653  55566678877764221100      0000000 0122357888898865 555554


Q ss_pred             eCCCcEEEEECCCCCeeEEEEe-cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          424 STDKMVKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                       .++.| ++....++.-..... ......+.++.|.+++.  +++++.+|.|.-++-
T Consensus       268 -~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          268 -GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ--GFILGQKGILLRYVT  320 (327)
T ss_dssp             -STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE--EEEECSTTEEEEECC
T ss_pred             -CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc--eEEEcCCceEEEEcC
Confidence             46766 455554442111111 12235578888876554  556778898776653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.63  E-value=0.052  Score=60.08  Aligned_cols=291  Identities=11%  Similarity=0.120  Sum_probs=145.4

Q ss_pred             ccccccccccCC------CceEEEEEe-cCCcceeEEEEEecCCCCCCCeeeeecccc--CCCcceeeeecCCCCCCCCC
Q 010748          139 SEDLEDMTINPN------DAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHHIII--PAFPLCMAWLDCPLKDREKG  209 (502)
Q Consensus       139 ~~~v~~~~~~p~------~~~l~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~s~~~  209 (502)
                      +.+|.|+.+.|.      .+++++|.. ++   .++|+.+..  .   ...  +...+  ...|..+....+     ...
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~---tv~I~sL~~--l---~~~--~~~~L~~~~~p~si~l~~~-----~~~  617 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDI---SARILKLPS--F---ELL--HKEMLGGEIIPRSILMTTF-----ESS  617 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTT---EEEEEETTT--C---CEE--EEEECCSSCCEEEEEEEEE-----TTE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCC---EEEEEECCC--C---CeE--EEEECCCCCCCcEEEEEEe-----CCC
Confidence            457899999864      368899986 54   556655542  1   111  22223  234444433322     245


Q ss_pred             CEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCC
Q 010748          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  289 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg  289 (502)
                      .+|.+|-.||.+.-+.++.......                     .. +..+-| +.+|.-..+...++.-++++|. .
T Consensus       618 ~~L~igl~dG~l~~~~~d~~tg~l~---------------------d~-r~~~LG-~~pv~L~~~~~~~~~~V~a~s~-r  673 (1158)
T 3ei3_A          618 HYLLCALGDGALFYFGLNIETGLLS---------------------DR-KKVTLG-TQPTVLRTFRSLSTTNVFACSD-R  673 (1158)
T ss_dssp             EEEEEEETTSEEEEEEECTTTCCEE---------------------EE-EEEECC-SSCCEEEEEESSSCEEEEEESS-S
T ss_pred             cEEEEEeCCCeEEEEEEcCCCCccc---------------------cc-eeEEcC-CCceEEEEEeeCCceeEEEECC-C
Confidence            7899999999987777653211000                     00 000111 2344433343333333333332 3


Q ss_pred             cEEEEeCCCCeeeE-eeccCCCCe-EEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCC-ccceEeecCCeeEEEeCCCCC
Q 010748          290 QVKIWDVAAGKCNL-TLEHHTDKV-QAVAWNHHS-PQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       290 ~v~vwd~~~~~~~~-~~~~h~~~v-~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~  365 (502)
                      ...++--+ ++... .+.  -..+ ....|+... +.-++..+ ++.++|.-+..... ..........+..++++|..+
T Consensus       674 p~liy~~~-~~l~~s~l~--~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~  749 (1158)
T 3ei3_A          674 PTVIYSSN-HKLVFSNVN--LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQ  749 (1158)
T ss_dssp             CEEEEESS-SSEEEEEBS--SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGT
T ss_pred             CEEEEEcC-CceEEeccC--hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCC
Confidence            33334322 33221 111  1123 233454321 23344333 56699988754322 223345667788999998765


Q ss_pred             CEEEEEeCC------------------------------------------------CcEEEEECCCCCCCCCCCCCccc
Q 010748          366 HSFVVSLED------------------------------------------------GTIKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       366 ~~~~~~~~d------------------------------------------------g~v~i~d~~~~~~~~~~~~~~~~  397 (502)
                      .++++.+..                                                +.|+++|..+.         ..+
T Consensus       750 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---------~~i  820 (1158)
T 3ei3_A          750 CFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF---------EVL  820 (1158)
T ss_dssp             EEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTC---------CEE
T ss_pred             EEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCC---------eEE
Confidence            333333211                                                12333343332         222


Q ss_pred             eEEec-cCCCeeEEE---EcCCCCCEEEEEe----------CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCc
Q 010748          398 FTLHA-HDKAVCTIS---YNPLVPNLLATGS----------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  463 (502)
Q Consensus       398 ~~~~~-h~~~v~~l~---~sp~~~~~l~t~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~  463 (502)
                      ..+.- ....+.+++   |......+|+.|+          ..|.|.+|++...+...+.... ..++|++++--. | +
T Consensus       821 ~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~-v~g~v~al~~~~-g-~  897 (1158)
T 3ei3_A          821 HAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE-VKGAVYSMVEFN-G-K  897 (1158)
T ss_dssp             EEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-ESSCEEEEEEET-T-E
T ss_pred             EEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-cCCcCEEEeeeC-C-E
Confidence            22211 112233433   4333346888876          3478999999766554444433 468898887543 4 3


Q ss_pred             EEEEEeCCCcEEEEECCCCcccc
Q 010748          464 VLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       464 ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      +|++.  ..+|++|++...+.++
T Consensus       898 Lla~i--g~~l~vy~l~~~~~L~  918 (1158)
T 3ei3_A          898 LLASI--NSTVRLYEWTTEKELR  918 (1158)
T ss_dssp             EEEEE--TTEEEEEEECTTSCEE
T ss_pred             EEEEc--CCEEEEEECCCCceEE
Confidence            55543  4689999998766544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.62  E-value=0.0038  Score=64.07  Aligned_cols=192  Identities=12%  Similarity=0.118  Sum_probs=118.6

Q ss_pred             EEEEEec-CCcEEEEeC-CCCeeeEeeccCCCC-----------eEEEEEcCCCC---cEEEEEeCCCcEEEEecCCCCC
Q 010748          281 ILASASA-DKQVKIWDV-AAGKCNLTLEHHTDK-----------VQAVAWNHHSP---QILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       281 ~l~sgs~-dg~v~vwd~-~~~~~~~~~~~h~~~-----------v~~l~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      .|+.++. ++.|.-+|. .+|+.+.++......           ...+.+.|.+.   ..++.++.++.|..+|.++++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            6667777 889999999 899988877532211           12344533331   2378888999999999998875


Q ss_pred             ccceEeecC-----CeeE-EEeCCCCCCEEEEEeC------CCcEEEEECCCCCCCCCCCCCccceEEeccCCC------
Q 010748          345 SGFKWAVAA-----DVES-LAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA------  406 (502)
Q Consensus       345 ~~~~~~~~~-----~v~~-v~~~~~~~~~~~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~------  406 (502)
                      .-.. ....     .+.+ -...  +. .+++++.      +|.|+.+|.+++         +.++++......      
T Consensus       144 ~W~~-~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG---------~~~W~~~~~~~~~~~~~~  210 (599)
T 1w6s_A          144 VWKV-ENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTG---------EQVWRAYATGPDKDLLLA  210 (599)
T ss_dssp             EEEE-ECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTC---------CEEEEEESSSCHHHHTBC
T ss_pred             EEee-cCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCC---------cEEEEEcCCCCccccccc
Confidence            4221 1111     1111 0111  22 5666653      799999999987         555555432110      


Q ss_pred             -------------------------------e-eEEEEcCCCCCEEEEEeCC----------------CcEEEEECCCCC
Q 010748          407 -------------------------------V-CTISYNPLVPNLLATGSTD----------------KMVKLWDLSNNQ  438 (502)
Q Consensus       407 -------------------------------v-~~l~~sp~~~~~l~t~s~d----------------g~i~vwd~~~~~  438 (502)
                                                     + ..+++.+.. .+++.++.+                +.|..+|..+++
T Consensus       211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~  289 (599)
T 1w6s_A          211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE  289 (599)
T ss_dssp             TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred             cccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence                                           0 134566665 677776655                379999999998


Q ss_pred             eeEEEEecCCC--------CcEEEEEEc-CCCC--cEEEEEeCCCcEEEEECCCCccccc
Q 010748          439 PSCIASRNPKA--------GAVFSVAFS-EDSP--FVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       439 ~~~~~~~~~~~--------~~v~~~~~s-pd~~--~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ..-.+....|.        .++. +... .+|+  .+++.++.+|.++++|..+++.+..
T Consensus       290 ~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  348 (599)
T 1w6s_A          290 AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (599)
T ss_dssp             EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence            54444443332        2232 2222 4562  2577788999999999999998754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.60  E-value=0.045  Score=56.44  Aligned_cols=203  Identities=6%  Similarity=0.039  Sum_probs=125.2

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      ..+.+|+|.+..+.++.+-...+.|+.+++........+...-.....|++.+.+.+++++-+..+.|.+.++.......
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            34778999986565666666678899999875443333333335677889987664677776778899999987654322


Q ss_pred             ceEeecCCeeEEEeCCCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          347 FKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~~~~~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      .....-.....++++|..+.++++-. ..+.|...++...         .........-...+.|++++...++.++=+.
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~---------~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~  499 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS---------DRVVLVNTSLGWPNGLALDYDEGKIYWGDAK  499 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC---------ccEEEEeCCCCCCeeeEEcccCCEEEEEECC
Confidence            22122346789999997554444432 2356777666532         1111222234567899999876455555556


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      .+.|..+++.......+..  .......++++..+  +++.+-...+.|...+..++
T Consensus       500 ~~~I~~~~~dG~~~~~~~~--~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          500 TDKIEVMNTDGTGRRVLVE--DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             TTEEEEEESSSCCCEEEEE--CCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred             CCEEEEEecCCCceEEEec--cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence            6789999987654332322  11222345555544  45666556667777777776

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.57  E-value=0.039  Score=57.02  Aligned_cols=207  Identities=8%  Similarity=0.044  Sum_probs=128.5

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      ..+.+|+|.+..+.++.+=...+.|+.+++........+..      ....+..|++...+.++..+-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            44677888887555555555567788888764332222322      234688999998875677777788899999986


Q ss_pred             CCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      .................++++|....++++-....  .|...++...         .........-...+.|++.+...+
T Consensus       420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~---------~~~~l~~~~l~~P~gla~D~~~~~  490 (628)
T 4a0p_A          420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT---------EREVLFFSGLSKPIALALDSRLGK  490 (628)
T ss_dssp             SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTE
T ss_pred             CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC---------CcEEEEeccCCCccEEEEeCCCCE
Confidence            54322222223456889999996554555543333  5666666532         121122223446789999997645


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      +.++-+..+.|..+++.......+..  .......++++.. + +++.+-.....|...|..+++...
T Consensus       491 LYw~D~~~~~I~~~~~dG~~r~~~~~--~~~~~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~~  554 (628)
T 4a0p_A          491 LFWADSDLRRIESSDLSGANRIVLED--SNILQPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGRT  554 (628)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEC--SSCSCEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCCE
T ss_pred             EEEEeCCCCEEEEEeCCCCceEEEEc--CCCCCcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCcE
Confidence            55555557889999997655322221  2334567888766 3 367776677788888888776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.50  E-value=0.058  Score=51.84  Aligned_cols=200  Identities=11%  Similarity=0.128  Sum_probs=130.4

Q ss_pred             eEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe
Q 010748          271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  350 (502)
                      +.-.||. .++||.=. ..++.|+|+++...+..+.. ...|.--.|-...  .|+-.+ +..|+-|++.....+...+.
T Consensus        70 sAIMnP~-~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFd  143 (494)
T 1bpo_A           70 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFD  143 (494)
T ss_dssp             EEEECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred             eeeeCCC-CcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhhee
Confidence            3446777 55666654 68999999999988888874 4567777786654  344333 57899999976444433332


Q ss_pred             -e----cCCeeEEEeCCCCCCEEEEEe------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC--CC
Q 010748          351 -V----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--VP  417 (502)
Q Consensus       351 -~----~~~v~~v~~~~~~~~~~~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--~~  417 (502)
                       |    ...|.....+++...++++|-      -.|.+.+|.+..          .....+.+|...-..+.+..+  ..
T Consensus       144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er----------~~sQ~ieGhaa~F~~~~~~g~~~~~  213 (494)
T 1bpo_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----------KVSQPIEGHAASFAQFKMEGNAEES  213 (494)
T ss_dssp             CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT----------CCEEEECCSEEEEEEEECTTCSSEE
T ss_pred             cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc----------cccchheeeeeeeEEEecCCCCCCc
Confidence             2    345777788888877777663      347789999885          345667777655544443321  11


Q ss_pred             CEEEEEeCC---CcEEEEECCCC---Ce---eEEEE--e--cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          418 NLLATGSTD---KMVKLWDLSNN---QP---SCIAS--R--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       418 ~~l~t~s~d---g~i~vwd~~~~---~~---~~~~~--~--~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      .+++.+...   +.++|.++...   .+   .....  +  ........++..++... ++..-+.-|.|++||+.++.+
T Consensus       214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCE
T ss_pred             eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEeccccee
Confidence            344444443   67999988543   11   01111  1  12234566888888877 577788999999999999998


Q ss_pred             ccc
Q 010748          485 ISN  487 (502)
Q Consensus       485 ~~~  487 (502)
                      +..
T Consensus       293 i~~  295 (494)
T 1bpo_A          293 IYM  295 (494)
T ss_dssp             EEE
T ss_pred             eee
Confidence            743

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.49  E-value=0.026  Score=53.00  Aligned_cols=146  Identities=10%  Similarity=0.128  Sum_probs=90.6

Q ss_pred             CCcEEEEeC--CCCeeeEeecc------CC-CCeEEEEE--cCCCC-cEEEEEeCCCcEEEEecCCC---CC---ccceE
Q 010748          288 DKQVKIWDV--AAGKCNLTLEH------HT-DKVQAVAW--NHHSP-QILLSGSFDRSVVMKDARIS---TH---SGFKW  349 (502)
Q Consensus       288 dg~v~vwd~--~~~~~~~~~~~------h~-~~v~~l~~--~~~~~-~~l~s~s~dg~i~iwd~~~~---~~---~~~~~  349 (502)
                      +++|.+|++  .++. +..+..      .. ..+..+++  +|... .++++...+|.+..|++...   ..   ....+
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            578999976  3333 444421      11 45666777  77543 46888888999999998432   11   12345


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-cc-CCCeeEEEE--cCCCCCEEEEEe-
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AH-DKAVCTISY--NPLVPNLLATGS-  424 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h-~~~v~~l~~--sp~~~~~l~t~s-  424 (502)
                      ...+.+..+...+... .++++-++..|..|+........    ...+..+. ++ ...+..|++  .+++..+|++++ 
T Consensus       177 ~lgsq~EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ  251 (355)
T 3amr_A          177 KMNSQTEGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ  251 (355)
T ss_dssp             ECSSCEEEEEEETTTT-EEEEEETTTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             cCCCCcceEEEcCCCC-eEEEecccceEEEEeCCcCCCCC----ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence            6678899999998654 78899888777777755321000    12333321 22 246788887  444433555555 


Q ss_pred             CCCcEEEEECC-CCCe
Q 010748          425 TDKMVKLWDLS-NNQP  439 (502)
Q Consensus       425 ~dg~i~vwd~~-~~~~  439 (502)
                      .++++.+||.. +.+.
T Consensus       252 G~~s~~Vydr~~~~~~  267 (355)
T 3amr_A          252 GNSSYAIYDRQGKNKY  267 (355)
T ss_dssp             GGTEEEEEESSTTCCE
T ss_pred             CCCEEEEEECCCCCcE
Confidence            57799999997 4553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.33  E-value=0.12  Score=49.19  Aligned_cols=243  Identities=11%  Similarity=0.097  Sum_probs=121.3

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      |..++|       .|+|++|.++...|.|++++.+.. ...+..                    ...............|
T Consensus        20 P~~i~~-------~pdG~~l~V~e~~G~i~~~~~~g~-~~~~~~--------------------~~~~v~~~g~~g~~gi   71 (353)
T 2g8s_A           20 PWALAF-------LPDNHGMLITLRGGELRHWQAGKG-LSAPLS--------------------GVPDVWAHGQGGLLDV   71 (353)
T ss_dssp             EEEEEE-------CSTTCCEEEEETTTEEEEEETTTE-ECCCCB--------------------SCCCCCCSTTCSEEEE
T ss_pred             cEEEEE-------cCCCCEEEEEeCCceEEEEeCCCc-eeeEec--------------------CCcccccCCCCCceeE
Confidence            456666       688983445556799999875321 000000                    0000111223457899


Q ss_pred             EeccC---CCcEEEEEec-------CCcEEEEeCCCC-------eee-Eeecc---CCCCeEEEEEcCCCCcEEEEEeC-
Q 010748          273 AWNKE---FRNILASASA-------DKQVKIWDVAAG-------KCN-LTLEH---HTDKVQAVAWNHHSPQILLSGSF-  330 (502)
Q Consensus       273 ~~~~~---~~~~l~sgs~-------dg~v~vwd~~~~-------~~~-~~~~~---h~~~v~~l~~~~~~~~~l~s~s~-  330 (502)
                      +|+|+   ++.+.++-+.       ...|..|++...       +.+ ..+..   .......|.|.|++ .++++.+. 
T Consensus        72 a~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~  150 (353)
T 2g8s_A           72 VLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGEN  150 (353)
T ss_dssp             EECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCT
T ss_pred             EECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCC
Confidence            99995   3544444333       235666666432       111 11110   11123579999999 55555433 


Q ss_pred             ------------CCcEEEEecCCCCC-----------ccceEeec-CCeeEEEeCCCCCCEEEEEe-CCCcEEEEECCCC
Q 010748          331 ------------DRSVVMKDARISTH-----------SGFKWAVA-ADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTA  385 (502)
Q Consensus       331 ------------dg~i~iwd~~~~~~-----------~~~~~~~~-~~v~~v~~~~~~~~~~~~~~-~dg~v~i~d~~~~  385 (502)
                                  .|.|.-++....-.           ....+... .....++|+|....++++-. .++.=.+.-+..+
T Consensus       151 ~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G  230 (353)
T 2g8s_A          151 NQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKG  230 (353)
T ss_dssp             TCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTT
T ss_pred             CCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccC
Confidence                        24566666543210           11123222 33778999994343333322 1111122222221


Q ss_pred             CCC----------------------CCCCCCccceEEeccCCCeeEEEEcC-------CCCCEEEEEeCCCcEEEEECCC
Q 010748          386 KSD----------------------PDSTSQQSSFTLHAHDKAVCTISYNP-------LVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       386 ~~~----------------------~~~~~~~~~~~~~~h~~~v~~l~~sp-------~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      ...                      .......++..+..| ...+.+.|..       ++ .++++....+.|...++..
T Consensus       231 ~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~  308 (353)
T 2g8s_A          231 KNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNG  308 (353)
T ss_dssp             CBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEET
T ss_pred             CcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCC
Confidence            100                      000012334444433 4567788864       23 6777666778888888776


Q ss_pred             CCeeEEEEe-cCCCCcEEEEEEcCCCCcEEEE
Q 010748          437 NQPSCIASR-NPKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       437 ~~~~~~~~~-~~~~~~v~~~~~spd~~~ll~s  467 (502)
                      ++......+ ......+..+++.|+|. |+++
T Consensus       309 ~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~  339 (353)
T 2g8s_A          309 DKVTEDGRILTDRGQRIRDVRTGPDGY-LYVL  339 (353)
T ss_dssp             TEEEEEEEESGGGCCCEEEEEECTTSC-EEEE
T ss_pred             CeEeeeEEcccCCCCceeEEEECCCCc-EEEE
Confidence            543222222 12235799999999998 4553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.30  E-value=0.014  Score=54.23  Aligned_cols=185  Identities=16%  Similarity=0.189  Sum_probs=94.1

Q ss_pred             CcEEEEEecC-----CcEEEEeCCCCe---e--eEeeccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCC
Q 010748          279 RNILASASAD-----KQVKIWDVAAGK---C--NLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARIST  343 (502)
Q Consensus       279 ~~~l~sgs~d-----g~v~vwd~~~~~---~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~  343 (502)
                      +.+++.|+.+     ..+.+||+.+.+   -  +..+........++.+  ++ .+++.|+.+     ..+.+||+.+.+
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCe
Confidence            4577777754     468999988765   2  2222211122222223  34 677777654     357888887654


Q ss_pred             CccceEeec---CCeeEEEeCCCCCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          344 HSGFKWAVA---ADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       344 ~~~~~~~~~---~~v~~v~~~~~~~~~~~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      -... ....   ....++.+   +..+++.|+.+     ..+.+||+.+..       ...+..+.........+.+  +
T Consensus       140 W~~~-~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~-------W~~~~~~p~~r~~~~~~~~--~  206 (301)
T 2vpj_A          140 WSML-GDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGH-------WTNVTPMATKRSGAGVALL--N  206 (301)
T ss_dssp             EEEE-EECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--T
T ss_pred             EEEC-CCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCc-------EEeCCCCCcccccceEEEE--C
Confidence            2211 1111   11222223   23466666544     458889987641       1111111111111222222  2


Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010748          416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-----g~i~vwd~~~~~  483 (502)
                      + .+++.|+.+     ..+.+||+.+.+...+...........++.+  ++. +++.||.+     ..|.+||+.+.+
T Consensus       207 ~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          207 D-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             T-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             C-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCCe
Confidence            3 677777764     4689999998875444333222222222333  454 67778765     357889987653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.28  E-value=0.013  Score=54.45  Aligned_cols=163  Identities=10%  Similarity=0.100  Sum_probs=103.7

Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee-------cCCeeEEEe---CCCCCCEEEEEe----
Q 010748          307 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-------AADVESLAW---DPHAEHSFVVSL----  372 (502)
Q Consensus       307 ~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~---~~~~~~~~~~~~----  372 (502)
                      .......+++|++....++++.-..++|..|+...+.........       ...+..+.|   .|.+ .++++..    
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~a   88 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKS   88 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccccc
Confidence            334455688999877455555558999999998754332221111       113578899   6763 3555433    


Q ss_pred             ---------CCCcEEEEECC---CCCCCCCCCCCccceEEe--cc-----------CCCeeEEEEcCCCCCEEEEEeCC-
Q 010748          373 ---------EDGTIKGFDIR---TAKSDPDSTSQQSSFTLH--AH-----------DKAVCTISYNPLVPNLLATGSTD-  426 (502)
Q Consensus       373 ---------~dg~v~i~d~~---~~~~~~~~~~~~~~~~~~--~h-----------~~~v~~l~~sp~~~~~l~t~s~d-  426 (502)
                               .+..|..||+.   ++         +.++...  ..           ......++..++| +..++++.- 
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg---------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~  158 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENS---------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGM  158 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTC---------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCC---------CEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCC
Confidence                     25779999998   55         3444332  11           1247899999998 888888887 


Q ss_pred             CcEEEEECCCCCeeEEEEec---CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          427 KMVKLWDLSNNQPSCIASRN---PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~---~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      +.|..++.............   ......+.|+++|++.. |++....|.|..+|+.+
T Consensus       159 ~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~-Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          159 PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNK-LIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTE-EEEESSSSSEEEEECSS
T ss_pred             CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCE-EEEEcCCCeEEEEcCCC
Confidence            88888777655322111111   11223668999999985 55555599999999874

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.26  E-value=0.025  Score=52.38  Aligned_cols=147  Identities=16%  Similarity=0.164  Sum_probs=73.5

Q ss_pred             CcEEEEEecC-----CcEEEEeCCCCeee--EeeccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCcc
Q 010748          279 RNILASASAD-----KQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSG  346 (502)
Q Consensus       279 ~~~l~sgs~d-----g~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~  346 (502)
                      +.+++.|+.+     ..+.+||+.+.+-.  ..+........++.+  ++ .+++.|+.+     ..+.+||+.+..-..
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            4577777654     35889998876532  222211112222222  34 677777654     458888887643211


Q ss_pred             ce-Ee-ecCCeeEEEeCCCCCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          347 FK-WA-VAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       347 ~~-~~-~~~~v~~v~~~~~~~~~~~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      .. .. ......++.+   +..+++.|+.+     ..+.+||+.+..       ...+..+.........+.+  ++ .+
T Consensus       190 ~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~i  256 (301)
T 2vpj_A          190 VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS-------WTTVTSMTTPRCYVGATVL--RG-RL  256 (301)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT-EE
T ss_pred             CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc-------EEECCCCCCcccceeEEEE--CC-EE
Confidence            10 00 0111222333   23467777653     468899987652       1111111111111222222  33 67


Q ss_pred             EEEEeCC-----CcEEEEECCCCCeeE
Q 010748          420 LATGSTD-----KMVKLWDLSNNQPSC  441 (502)
Q Consensus       420 l~t~s~d-----g~i~vwd~~~~~~~~  441 (502)
                      ++.|+.+     ..|.+||+.+.+...
T Consensus       257 ~v~GG~~~~~~~~~v~~yd~~~~~W~~  283 (301)
T 2vpj_A          257 YAIAGYDGNSLLSSIECYDPIIDSWEV  283 (301)
T ss_dssp             EEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred             EEEcCcCCCcccccEEEEcCCCCeEEE
Confidence            7777765     357888988776433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.23  E-value=0.16  Score=48.80  Aligned_cols=244  Identities=13%  Similarity=0.175  Sum_probs=146.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|..+.||.=. ..++.|||+++...+..                         +.   ....|.-=.|-..  +.|+-.
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks-------------------------~~---~~e~VvfWkWis~--~~l~lV  122 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKA-------------------------HT---MTDDVTFWKWISL--NTVALV  122 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEE-------------------------EE---CSSCCCEEEEEET--TEEEEE
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhcc-------------------------ee---cCCCceEEEecCC--CeEEEE
Confidence            67788888765 68999999985222111                         11   2345777777655  356555


Q ss_pred             ecCCcEEEEeCCC-CeeeEeeccC----CCCeEEEEEcCCCCcEEEEEe------CCCcEEEEecCCCCCccceEeecCC
Q 010748          286 SADKQVKIWDVAA-GKCNLTLEHH----TDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       286 s~dg~v~vwd~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~  354 (502)
                      +. ..|+-|++.. ..+++.|..|    ...|..-..+++..-++++|-      -.|.+.+|......... ..+|.+.
T Consensus       123 T~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-ieGhaa~  200 (494)
T 1bpo_A          123 TD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS  200 (494)
T ss_dssp             CS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE-ECCSEEE
T ss_pred             cC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch-heeeeee
Confidence            54 5799999964 3456666444    356777777888844444442      24778899887654322 3334333


Q ss_pred             eeEEEeCC--CCCCEEEEEeC---CCcEEEEECCCCCCCCCCCCCccceEEe----ccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          355 VESLAWDP--HAEHSFVVSLE---DGTIKGFDIRTAKSDPDSTSQQSSFTLH----AHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       355 v~~v~~~~--~~~~~~~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...+....  ....+|+.+..   .+.+++.++....... ....+....+.    ....--.++..++.. .+++.-+.
T Consensus       201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~-~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK  278 (494)
T 1bpo_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK  278 (494)
T ss_dssp             EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC-CCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEET
T ss_pred             eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC-CCccceeeeeeCCcccccCceeEEEecccC-CEEEEEec
Confidence            33333321  11223333333   2789999986541100 00011111111    123445678888876 78889999


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      -|.|++||+.++.  +++.-.-...+|+..+-...... +++....|.|.--.+.....+..
T Consensus       279 ~G~i~lyDleTgt--~i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~~ivpy  337 (494)
T 1bpo_A          279 YGYIHLYDLETGT--CIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIPY  337 (494)
T ss_dssp             TSEEEEEETTTCC--EEEEEECCSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTTTHHHH
T ss_pred             CceEEEEecccce--eeeeecccCCceEEecccCCCCc-EEEEccCceEEEEEEccccchhh
Confidence            9999999999998  45555555677877777666554 55567889888877776665543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.19  E-value=0.035  Score=51.53  Aligned_cols=186  Identities=15%  Similarity=0.117  Sum_probs=94.4

Q ss_pred             CcEEEEEecC----CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEecCCCCCcc
Q 010748          279 RNILASASAD----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSG  346 (502)
Q Consensus       279 ~~~l~sgs~d----g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~  346 (502)
                      +.+++.|+.+    ..+.+||+.+.+-..  .+........++.+  ++ .+++.|+.+      ..+.+||+.+..-..
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            4577777754    678899998875322  22211112222222  34 677777765      458888887653111


Q ss_pred             c--eEeecCCeeEEEeCCCCCCEEEEEeC---------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          347 F--KWAVAADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       347 ~--~~~~~~~v~~v~~~~~~~~~~~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      .  .........++.+   +..+++.|+.         -..+.+||+.+..       ...+..+......-..+.+  +
T Consensus       133 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~  200 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET-------WTELCPMIEARKNHGLVFV--K  200 (306)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--T
T ss_pred             CCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCe-------EEECCCccchhhcceEEEE--C
Confidence            0  0000111122222   2345666543         3458889987651       1111111111111122222  2


Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010748          416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-----g~i~vwd~~~~~  483 (502)
                      + .+++.|+.+     ..+.+||+.+.+...+...........++.+  ++. +++.||.+     ..+.+||+.+.+
T Consensus       201 ~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          201 D-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             T-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             C-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            3 677776653     3588999988765443333222222233333  444 78888854     468999987754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.18  E-value=0.43  Score=52.83  Aligned_cols=191  Identities=16%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             ccccCCCcceeeeecCCCCCCCCCCEEEEecC-CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccC
Q 010748          186 HIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS  264 (502)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (502)
                      ...++.-+.|+...+.. .....++++|+|.. |++|+|++++..+.+.... ++.                      ..
T Consensus       549 ~~~l~~evscl~i~~~~-~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~-L~~----------------------~~  604 (1158)
T 3ei3_A          549 HTEMEHEVACLDITPLG-DSNGLSPLCAIGLWTDISARILKLPSFELLHKEM-LGG----------------------EI  604 (1158)
T ss_dssp             EEECSSCEEEEECCCCS-SSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE-CCS----------------------SC
T ss_pred             ccCCCCceEEEEeecCC-CCcccccEEEEEECCCCEEEEEECCCCCeEEEEE-CCC----------------------CC
Confidence            34456666777653221 11224689999996 9999999997533221100 100                      00


Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeC--CCCeeeE---eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDV--AAGKCNL---TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~--~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~  339 (502)
                      -...|.-+.+  .+..+|..|-.||.+.-+.+  .+|....   .+-+ +.++.-..+...+...+++.| ++...+|--
T Consensus       605 ~p~si~l~~~--~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~  680 (1158)
T 3ei3_A          605 IPRSILMTTF--ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSS  680 (1158)
T ss_dssp             CEEEEEEEEE--TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEES
T ss_pred             CCcEEEEEEe--CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEc
Confidence            1122333333  23468889999998865554  4454322   1222 345554445444433333333 454445443


Q ss_pred             CCCCCccceEeec-CCee-EEEeCCCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748          340 RISTHSGFKWAVA-ADVE-SLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       340 ~~~~~~~~~~~~~-~~v~-~v~~~~~~-~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +. + .. ..... ..+. ...|+... +.-++..+ ++.++|..+....       ...+.++.- ...+..++++|..
T Consensus       681 ~~-~-l~-~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~-------~~~~~~ipL-~~Tprri~y~~~~  748 (1158)
T 3ei3_A          681 NH-K-LV-FSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ-------KLHIRTVPL-YESPRKICYQEVS  748 (1158)
T ss_dssp             SS-S-EE-EEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS-------SEEEEEEEC-SSEEEEEEEEGGG
T ss_pred             CC-c-eE-EeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC-------CeeEEEEeC-CCCceEEEEcCCC
Confidence            32 1 11 11111 1232 33454322 23344444 4569998876541       122333332 3456777888765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.17  E-value=0.16  Score=47.64  Aligned_cols=151  Identities=9%  Similarity=0.003  Sum_probs=83.6

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeC--CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDV--AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  342 (502)
                      +...+..+.+.++ +.+++.+...+..+-+|-  .+.+.+.  ......+..+.+.+++ .+ +.++.+|.+++.....+
T Consensus       161 ~~~~~~~~~~~~~-~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g-~~-~~~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          161 AIGVMRNLNRSPS-GEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDG-RL-WMIVNGGKIAFSDPDNS  235 (327)
T ss_dssp             CCCCEEEEEECTT-SCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTS-CE-EEEETTTEEEEEETTEE
T ss_pred             CCcceEEEEEcCC-CcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCC-CE-EEEeCCceEEEecCCCC
Confidence            3456888999987 446665544333333442  2333332  2345678899998887 54 45566788777632111


Q ss_pred             C---Cccce-EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec---cCCCeeEEEEcCC
Q 010748          343 T---HSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPL  415 (502)
Q Consensus       343 ~---~~~~~-~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~sp~  415 (502)
                      .   ..... ......+.++.+.+.+.  +++++.+|.| ++....+         .....+..   +...+.++.|.+.
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~--~~~~g~~g~i-~~S~DgG---------~tW~~~~~~~~~~~~~~~v~~~~~  303 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNE--VWLAGGAGAL-LCSQDGG---------QTWQQDVDVKKVPSNFYKILFFSP  303 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSC--EEEEESTTCE-EEESSTT---------SSCEECGGGTTSSSCCCEEEEEET
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCE--EEEEeCCCeE-EEeCCCC---------cccEEcCccCCCCCCeEEEEEECC
Confidence            1   11000 01123578888987543  4444557766 3343333         22222221   2456788888753


Q ss_pred             CCCEEEEEeCCCcEEEEEC
Q 010748          416 VPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~  434 (502)
                        ..+++++.+|.|.-++-
T Consensus       304 --~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          304 --DQGFILGQKGILLRYVT  320 (327)
T ss_dssp             --TEEEEECSTTEEEEECC
T ss_pred             --CceEEEcCCceEEEEcC
Confidence              45777778898776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.12  E-value=0.024  Score=52.61  Aligned_cols=186  Identities=16%  Similarity=0.158  Sum_probs=92.9

Q ss_pred             CcEEEEEecC-----CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEecCCCCCcc
Q 010748          279 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSG  346 (502)
Q Consensus       279 ~~~l~sgs~d-----g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~  346 (502)
                      +.+++.|+.+     ..+.+||+.+.+-..  .+........++.+  ++ .+++.|+.++     .+.+||+.+.+-..
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            4577777754     358899988765322  22211112222222  34 6777777654     46778876543111


Q ss_pred             ce--EeecCCeeEEEeCCCCCCEEEEEeC-------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          347 FK--WAVAADVESLAWDPHAEHSFVVSLE-------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       347 ~~--~~~~~~v~~v~~~~~~~~~~~~~~~-------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      ..  ........++.+   +..+++.|+.       -..+.+||+.+..       ...+..+.........+.+  ++ 
T Consensus       139 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-  205 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE-------WTYIAEMSTRRSGAGVGVL--NN-  205 (302)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT-
T ss_pred             cCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc-------EEECCCCccccccccEEEE--CC-
Confidence            00  000111122223   2346666653       2358889987641       1111111111111222222  23 


Q ss_pred             CEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCc
Q 010748          418 NLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWDTLSDA  483 (502)
Q Consensus       418 ~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg-----~i~vwd~~~~~  483 (502)
                      .+++.|+.+     ..+.+||+.+.+...+............+.+  ++. +++.||.++     .+.+||+.++.
T Consensus       206 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          206 LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCCe
Confidence            677777754     3689999988765444333222111122222  444 678887654     48999997754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.09  E-value=0.018  Score=53.71  Aligned_cols=186  Identities=11%  Similarity=0.120  Sum_probs=92.6

Q ss_pred             CcEEEEEec----C-----CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCC
Q 010748          279 RNILASASA----D-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARIS  342 (502)
Q Consensus       279 ~~~l~sgs~----d-----g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~  342 (502)
                      +.+++.|+.    +     ..+.+||+.+.+-..  .+........++.+  ++ .+++.|+.+     ..+.+||+.+.
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTT
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCC
Confidence            446666665    2     468899988765322  22211112222233  34 677776643     35788888764


Q ss_pred             CCccce--EeecCCeeEEEeCCCCCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          343 THSGFK--WAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       343 ~~~~~~--~~~~~~v~~v~~~~~~~~~~~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      +-....  ........++.+   +..+++.|+.+     ..+.+||+.+..       ...+..+......-.++.+  +
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~  215 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE-------WRMITAMNTIRSGAGVCVL--H  215 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEEEE--T
T ss_pred             eEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe-------EeeCCCCCCccccceEEEE--C
Confidence            311100  001111222333   23466666544     458889987642       1111111111112222333  3


Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010748          416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-----g~i~vwd~~~~~  483 (502)
                      + .+++.|+.+     ..+.+||+.+.+...+............+.+  ++. +++.||.+     ..+.+||+.+.+
T Consensus       216 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          216 N-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             T-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             C-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCCCE
Confidence            3 677777654     4599999988764433322222222222222  444 67778754     358899987654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.04  E-value=0.055  Score=50.17  Aligned_cols=150  Identities=9%  Similarity=0.053  Sum_probs=75.1

Q ss_pred             CcEEEEEecC------CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeC---------CCcEEEEecCC
Q 010748          279 RNILASASAD------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARI  341 (502)
Q Consensus       279 ~~~l~sgs~d------g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~---------dg~i~iwd~~~  341 (502)
                      +.+++.|+.+      ..+.+||+.+.+-..  .+........++.+  ++ .+++.|+.         -..+.+||+.+
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCCCC
Confidence            4577777765      468999998775322  22111111222222  34 66666654         34578888876


Q ss_pred             CCCccce-Ee-ecCCeeEEEeCCCCCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748          342 STHSGFK-WA-VAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       342 ~~~~~~~-~~-~~~~v~~v~~~~~~~~~~~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      ..-.... .. .......+.+   +..+++.|+.+     ..+.+||+.+..       ...+..+........++.+  
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--  246 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------WKMVSPMPWKGVTVKCAAV--  246 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE-------EEECCCCSCCBSCCEEEEE--
T ss_pred             CeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc-------EEECCCCCCCccceeEEEE--
Confidence            5321110 00 0111222223   23466666543     358889987642       1111111111122223333  


Q ss_pred             CCCCEEEEEeCC-----CcEEEEECCCCCeeEEEE
Q 010748          415 LVPNLLATGSTD-----KMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       415 ~~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~  444 (502)
                      ++ .+++.|+.+     ..+.+||+.+.+...+..
T Consensus       247 ~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~  280 (306)
T 3ii7_A          247 GS-IVYVLAGFQGVGRLGHILEYNTETDKWVANSK  280 (306)
T ss_dssp             TT-EEEEEECBCSSSBCCEEEEEETTTTEEEEEEE
T ss_pred             CC-EEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCC
Confidence            33 777888754     458899998876544433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.00  E-value=0.25  Score=46.91  Aligned_cols=241  Identities=11%  Similarity=0.060  Sum_probs=122.9

Q ss_pred             CcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee
Q 010748          192 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       192 ~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      .|..++|       .|+|+++++ ...|.|++++.+ +.  .+...                    .. ...........
T Consensus        30 ~P~~ia~-------~pdG~l~V~-e~~g~I~~~d~~-G~--~~~~~--------------------~~-v~~~g~~g~~g   77 (354)
T 3a9g_A           30 VPWSIAP-------LGGGRYLVT-ERPGRLVLISPS-GK--KLVAS--------------------FD-VANVGEAGLLG   77 (354)
T ss_dssp             CEEEEEE-------EETTEEEEE-ETTTEEEEECSS-CE--EEEEE--------------------CC-CCCSTTCSEEE
T ss_pred             CCeEEEE-------cCCCeEEEE-eCCCEEEEEeCC-Cc--eEeec--------------------cc-eeecCCCceee
Confidence            3566666       578875555 556999888632 11  11100                    00 11122356889


Q ss_pred             EEeccC---CCcEEEEEec---C----CcEEEEeCCCC-------eee-Eeecc-CCCCeEEEEEcCCCCcEEEEEeC--
Q 010748          272 LAWNKE---FRNILASASA---D----KQVKIWDVAAG-------KCN-LTLEH-HTDKVQAVAWNHHSPQILLSGSF--  330 (502)
Q Consensus       272 l~~~~~---~~~~l~sgs~---d----g~v~vwd~~~~-------~~~-~~~~~-h~~~v~~l~~~~~~~~~l~s~s~--  330 (502)
                      |+|+|+   ++.++++-+.   +    +.|..|++...       +.+ ..+.. .......|.|.|++ .++++.+.  
T Consensus        78 ia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~  156 (354)
T 3a9g_A           78 LALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAA  156 (354)
T ss_dssp             EEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTT
T ss_pred             EEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCC
Confidence            999997   4544444432   3    56777876643       111 11221 11124679999999 65555432  


Q ss_pred             -----------CCcEEEEecCCCCC------ccceEee-cCCeeEEEeCCCCCCEEEEEeCCC---cEEEEECCCCCC-C
Q 010748          331 -----------DRSVVMKDARISTH------SGFKWAV-AADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKS-D  388 (502)
Q Consensus       331 -----------dg~i~iwd~~~~~~------~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~dg---~v~i~d~~~~~~-~  388 (502)
                                 .|.|.-++....-.      ....+.. -.....++|+|....++++-...+   .|.+..  .+.. .
T Consensus       157 ~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyG  234 (354)
T 3a9g_A          157 DPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYG  234 (354)
T ss_dssp             CGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCC
T ss_pred             CCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCC
Confidence                       24555555543200      0112221 123567999995444444433222   233332  1110 0


Q ss_pred             C--------CCCCCccceEEeccCCCeeEEEEc-------CCCCCEEEEEeCCCcEEEEECCCC-CeeEEEEe-cCCCCc
Q 010748          389 P--------DSTSQQSSFTLHAHDKAVCTISYN-------PLVPNLLATGSTDKMVKLWDLSNN-QPSCIASR-NPKAGA  451 (502)
Q Consensus       389 ~--------~~~~~~~~~~~~~h~~~v~~l~~s-------p~~~~~l~t~s~dg~i~vwd~~~~-~~~~~~~~-~~~~~~  451 (502)
                      +        ......++..+.........++|.       .++ .++++.-..+.|...++... .......+ ......
T Consensus       235 wp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~r  313 (354)
T 3a9g_A          235 WPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGR  313 (354)
T ss_dssp             TTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCC
T ss_pred             CCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCC
Confidence            0        000013444442223457788884       344 66666666778888888753 22112222 223467


Q ss_pred             EEEEEEcCCCCcEEEEEe
Q 010748          452 VFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       452 v~~~~~spd~~~ll~sg~  469 (502)
                      +..+++.|||. |+++..
T Consensus       314 p~~v~~~pDG~-lyv~~~  330 (354)
T 3a9g_A          314 LRDVVIDDDGG-ILISTS  330 (354)
T ss_dssp             EEEEEECTTSC-EEEEEC
T ss_pred             eeEEEECCCCc-EEEEEe
Confidence            89999999997 555543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.97  E-value=0.16  Score=48.17  Aligned_cols=183  Identities=13%  Similarity=0.089  Sum_probs=101.6

Q ss_pred             cceeeEEecc--CCCcEEEEEec---CCcEEEEeCCCC----eeeEeeccC-CCCeEEEEEcCCCCcEEEEEeC------
Q 010748          267 DSVLGLAWNK--EFRNILASASA---DKQVKIWDVAAG----KCNLTLEHH-TDKVQAVAWNHHSPQILLSGSF------  330 (502)
Q Consensus       267 ~~V~~l~~~~--~~~~~l~sgs~---dg~v~vwd~~~~----~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~------  330 (502)
                      .....|.+.+  ++..+|+.+..   ..+|.+|++...    ..+.++.+. -...+.+.+.++| .+.++...      
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~  190 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPY  190 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcc
Confidence            4556666655  33334544422   457788776543    223344332 2357889999998 66665531      


Q ss_pred             -----------CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE
Q 010748          331 -----------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       331 -----------dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                                 .|.|..++.  .+ .......-...+.++|+|++..++++-+..+.|..|++.....      ......
T Consensus       191 ~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~------l~~~~~  261 (355)
T 3sre_A          191 LKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT------LTPLRV  261 (355)
T ss_dssp             HHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC------EEEEEE
T ss_pred             cccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc------EecCEE
Confidence                       244555554  22 2223333456789999999876666677788999999874210      111222


Q ss_pred             EeccCCCeeEEEEcC-CCCCEEEEEeCC-CcEEEEECCCCCeeEEEEecC---CCCcEEEEEEcCCCC
Q 010748          400 LHAHDKAVCTISYNP-LVPNLLATGSTD-KMVKLWDLSNNQPSCIASRNP---KAGAVFSVAFSEDSP  462 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp-~~~~~l~t~s~d-g~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~spd~~  462 (502)
                      + ...+..-.+++.+ +| ++.+++..+ +.|..|+.....+..+..+..   ....+.++ |..+|.
T Consensus       262 ~-~~~g~PDGi~vD~e~G-~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~  326 (355)
T 3sre_A          262 L-SFDTLVDNISVDPVTG-DLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGT  326 (355)
T ss_dssp             E-ECSSEEEEEEECTTTC-CEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSS
T ss_pred             E-eCCCCCceEEEeCCCC-cEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCC
Confidence            2 2345677889998 57 666666544 345555554323334443331   23334444 444665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.94  E-value=0.26  Score=54.65  Aligned_cols=243  Identities=13%  Similarity=0.180  Sum_probs=137.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|..+.||.=. ..++.|||+++...+..                         +   .....|.-=.|-..  +.|+-.
T Consensus        74 nP~~~iiALra-g~~lQiFnl~~k~klks-------------------------~---~~~e~VvfWkWis~--~~l~lV  122 (1630)
T 1xi4_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKA-------------------------H---TMTDDVTFWKWISL--NTVALV  122 (1630)
T ss_pred             CCCcceEEEec-CCeEEEeehHHhhhhcc-------------------------c---ccCCCceEEEecCC--CeeEEE
Confidence            67788888765 68999999975222211                         1   12345777777655  245544


Q ss_pred             ecCCcEEEEeCCC-CeeeEeeccC----CCCeEEEEEcCCCCcEEEEEe------CCCcEEEEecCCCCCccceEeecCC
Q 010748          286 SADKQVKIWDVAA-GKCNLTLEHH----TDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       286 s~dg~v~vwd~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~  354 (502)
                      +. ..|.-|++.. ..++..|..|    ...|..-..+++..-.+++|-      -.|.+.+|......... ..+|.+.
T Consensus       123 T~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-iegha~~  200 (1630)
T 1xi4_A          123 TD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS  200 (1630)
T ss_pred             cC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-hhHhHhh
Confidence            43 5799999963 3455555444    456777777787744444442      35788899887654332 3333333


Q ss_pred             eeEEEeC--CCCCCEEEEEeC---CCcEEEEECCCC-CCCCCCCCCccceEE---eccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          355 VESLAWD--PHAEHSFVVSLE---DGTIKGFDIRTA-KSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       355 v~~v~~~--~~~~~~~~~~~~---dg~v~i~d~~~~-~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...+...  +....+|+.+..   .+.+++.++... ...+.. ..+.+-.+   .....-..++..++.. .++...+.
T Consensus       201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f-~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk  278 (1630)
T 1xi4_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-PKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK  278 (1630)
T ss_pred             hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC-ccccccccCCcccccCcceEEEecccc-CEEEEEec
Confidence            3222221  111222332221   368999988653 111100 00111111   1123334567777766 78888889


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      -|.|.+||+.++.  +++.-.-...+|+..+.++.... +++....|.|.--.+.....+.
T Consensus       279 ~G~~~~~d~~t~~--~i~~~ris~~~iF~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~iv~  336 (1630)
T 1xi4_A          279 YGYIHLYDLETGT--CIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIP  336 (1630)
T ss_pred             CceEEEEecccch--hhhhccccCCceEEeccCCCCCc-eEEEcCCceEEEEEEccchhhh
Confidence            9999999999987  44444344556666655544333 4445677777766666555543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.76  E-value=0.27  Score=46.50  Aligned_cols=187  Identities=6%  Similarity=-0.033  Sum_probs=104.4

Q ss_pred             ceeeEEeccCCCcEEEEEe-------------cCCcEEEEeCCCC--eee-Eeecc-----CCCCeEEEEEcC--CCCcE
Q 010748          268 SVLGLAWNKEFRNILASAS-------------ADKQVKIWDVAAG--KCN-LTLEH-----HTDKVQAVAWNH--HSPQI  324 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs-------------~dg~v~vwd~~~~--~~~-~~~~~-----h~~~v~~l~~~~--~~~~~  324 (502)
                      ..-.+...|+ + ++++++             .+|.|.++|+.+.  +.. ..+.+     ..-....+.+.+  ++..+
T Consensus        51 G~EDi~~~~~-G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPN-G-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTT-S-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCC-C-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            3456667776 4 344443             6899999998742  221 12222     223567777765  34334


Q ss_pred             EEEEeC---CCcEEEEecCCCCCccceE-ee----cCCeeEEEeCCCCCCEEEEEe-----------------CCCcEEE
Q 010748          325 LLSGSF---DRSVVMKDARISTHSGFKW-AV----AADVESLAWDPHAEHSFVVSL-----------------EDGTIKG  379 (502)
Q Consensus       325 l~s~s~---dg~i~iwd~~~~~~~~~~~-~~----~~~v~~v~~~~~~~~~~~~~~-----------------~dg~v~i  379 (502)
                      |+++..   ..+|.+|++.......... ..    -...+.+.+.+++. ++++..                 ..|.|+.
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEE
Confidence            544433   4678888876543322222 11    23467888888764 333332                 1245555


Q ss_pred             EECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CCeeEEEEecCCCCcEEEEEEc
Q 010748          380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       380 ~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      ++...            +..+...-...+.++|+|++..++++-+..+.|..|++.. +.......+ ...+..-.+++.
T Consensus       208 ~d~~~------------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD  274 (355)
T 3sre_A          208 YSPND------------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVD  274 (355)
T ss_dssp             ECTTC------------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEEC
T ss_pred             EECCe------------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEe
Confidence            55421            1222223345689999999855555666688999999864 333222233 224667889999


Q ss_pred             C-CCCcEEEEEeCC
Q 010748          459 E-DSPFVLAIGGSK  471 (502)
Q Consensus       459 p-d~~~ll~sg~~d  471 (502)
                      + +|. +.+++..+
T Consensus       275 ~e~G~-lwva~~~~  287 (355)
T 3sre_A          275 PVTGD-LWVGCHPN  287 (355)
T ss_dssp             TTTCC-EEEEEESC
T ss_pred             CCCCc-EEEEecCC
Confidence            9 588 45545433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.62  E-value=0.15  Score=47.36  Aligned_cols=186  Identities=10%  Similarity=0.059  Sum_probs=90.3

Q ss_pred             CcEEEEEec----C-------CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEE
Q 010748          279 RNILASASA----D-------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD--------RSVVMK  337 (502)
Q Consensus       279 ~~~l~sgs~----d-------g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d--------g~i~iw  337 (502)
                      +.+++.|+.    +       ..+.+||+.+++-..  .+.........+.+  ++ .+++.|+.+        ..+.+|
T Consensus        46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LN-SIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TT-EEEEECCEESSTTCCBCCCEEEE
T ss_pred             CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CC-EEEEEeCCcCCCCCcccceEEEE
Confidence            457777763    1       127788988765322  11111111112222  33 677777642        458888


Q ss_pred             ecCCCCCccce--EeecCCeeEEEeCCCCCCEEEEEeC-C-----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeE
Q 010748          338 DARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLE-D-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       338 d~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~~~~~-d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                      |+.+.+-....  ........++.+   +..+++.|+. +     ..+.+||+.+..       ...+..+......-.+
T Consensus       123 d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~  192 (315)
T 4asc_A          123 DRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFE-------WKELAPMQTARSLFGA  192 (315)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCEE
T ss_pred             CCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCe-------EEECCCCCCchhceEE
Confidence            88764311100  000111122222   2346666665 2     358889987642       1111111111111222


Q ss_pred             EEEcCCCCCEEEEEeCCC-----cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC------------
Q 010748          410 ISYNPLVPNLLATGSTDK-----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------------  472 (502)
Q Consensus       410 l~~sp~~~~~l~t~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg------------  472 (502)
                      +.+  ++ .+++.|+.++     .+.+||+.+.+...+............+.+  ++. +++.||.++            
T Consensus       193 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~~~  266 (315)
T 4asc_A          193 TVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGT-LYAIGGFATLETESGELVPTE  266 (315)
T ss_dssp             EEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEEEEECTTSCEEEEE
T ss_pred             EEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCE-EEEECCccccCcCCccccccc
Confidence            222  33 6777777654     488999988765444332222222222333  444 677787642            


Q ss_pred             --cEEEEECCCCc
Q 010748          473 --KLEIWDTLSDA  483 (502)
Q Consensus       473 --~i~vwd~~~~~  483 (502)
                        .+.+||+.+.+
T Consensus       267 ~~~v~~yd~~~~~  279 (315)
T 4asc_A          267 LNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEEEETTTTE
T ss_pred             cCcEEEecCCCCh
Confidence              47788987653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.60  E-value=0.25  Score=45.77  Aligned_cols=148  Identities=12%  Similarity=0.124  Sum_probs=73.5

Q ss_pred             CcEEEEEecC-----CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCcc
Q 010748          279 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSG  346 (502)
Q Consensus       279 ~~~l~sgs~d-----g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~  346 (502)
                      +.+++.|+.+     ..+.+||+.+.+-..  .+........++.+  ++ .+++.|+.+     ..+.+||+.+..-..
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            4466666643     468899988765322  22211112222333  34 677777654     458888887643111


Q ss_pred             ce--EeecCCeeEEEeCCCCCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          347 FK--WAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       347 ~~--~~~~~~v~~v~~~~~~~~~~~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      ..  ........++.+   +..+++.|+.+     ..+.+||+.+..       ...+..+.........+.+  ++ .+
T Consensus       199 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~i  265 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET-------WTFVAPMKHRRSALGITVH--QG-RI  265 (308)
T ss_dssp             CCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEEEE--TT-EE
T ss_pred             CCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc-------EEECCCCCCCccceEEEEE--CC-EE
Confidence            00  001111223333   24467777654     468899987642       1111111111111222222  23 67


Q ss_pred             EEEEeCC-----CcEEEEECCCCCeeEE
Q 010748          420 LATGSTD-----KMVKLWDLSNNQPSCI  442 (502)
Q Consensus       420 l~t~s~d-----g~i~vwd~~~~~~~~~  442 (502)
                      ++.|+.+     ..+.+||+.+.+...+
T Consensus       266 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          266 YVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             EEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             EEEcCcCCCcccceEEEEcCCCCEEeec
Confidence            7777654     3478888887765444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.38  E-value=0.52  Score=43.29  Aligned_cols=145  Identities=11%  Similarity=0.105  Sum_probs=71.2

Q ss_pred             CcEEEEEecCC-----cEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC-------CcEEEEecCCCCC
Q 010748          279 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKDARISTH  344 (502)
Q Consensus       279 ~~~l~sgs~dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~  344 (502)
                      +.+++.|+.++     .+.+||+.+.+-..  .+........++.+  ++ .+++.|+.+       ..+.+||+.+..-
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            45777777653     57889988765332  22211111222222  33 667766643       3578888876432


Q ss_pred             ccc--eEeecCCeeEEEeCCCCCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          345 SGF--KWAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       345 ~~~--~~~~~~~v~~v~~~~~~~~~~~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      ...  .........++.+   +..+++.|+.+     ..+.+||+.+..       ...+..+.........+.+  ++ 
T Consensus       186 ~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~~~~r~~~~~~~~--~~-  252 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA-------WRQVADMNMCRRNAGVCAV--NG-  252 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT-
T ss_pred             EECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC-------EeeCCCCCCccccCeEEEE--CC-
Confidence            110  0000111222333   23467777654     368899987641       1111111111111122222  33 


Q ss_pred             CEEEEEeCCC-----cEEEEECCCCCe
Q 010748          418 NLLATGSTDK-----MVKLWDLSNNQP  439 (502)
Q Consensus       418 ~~l~t~s~dg-----~i~vwd~~~~~~  439 (502)
                      .+++.|+.++     .+.+||+.+.+.
T Consensus       253 ~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          253 LLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EEEEECCcCCCcccccEEEEcCCCCeE
Confidence            6777777553     488999987763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.29  E-value=0.76  Score=43.25  Aligned_cols=242  Identities=12%  Similarity=0.074  Sum_probs=121.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC---CCcEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNIL  282 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~~l  282 (502)
                      .|+|.++++--..|.|++++...+.. .+...                    ....+.......+.|+++|+   ++.+.
T Consensus        40 ~pdG~llVter~~G~I~~v~~~~g~~-~~v~~--------------------~~~v~~~g~~GllGia~~Pdf~~~g~lY   98 (347)
T 3das_A           40 LPGGDLLVSSRDEATITRVDAKTGRK-TELGE--------------------VPGVSPSGEGGLLGIALSPDYASDHMVY   98 (347)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCCE-EEEEE--------------------CTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred             cCCCcEEEEEecCCEEEEEECCCCcE-eeecc--------------------cCceeecCCCCceeeEeccccccCCEEE
Confidence            68998777776589999887543221 11000                    00112234567899999985   24333


Q ss_pred             EEE--ecCCcEEEEeCCCC----------eee-Eeec-cCCCCeEEEEEcCCCCcEEEEEeC-------------CCcEE
Q 010748          283 ASA--SADKQVKIWDVAAG----------KCN-LTLE-HHTDKVQAVAWNHHSPQILLSGSF-------------DRSVV  335 (502)
Q Consensus       283 ~sg--s~dg~v~vwd~~~~----------~~~-~~~~-~h~~~v~~l~~~~~~~~~l~s~s~-------------dg~i~  335 (502)
                      ++-  ..++.|.-|.+..+          +.+ ..+. ........|.|.|++ .++++.+.             .|.|.
T Consensus        99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~Il  177 (347)
T 3das_A           99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKIL  177 (347)
T ss_dssp             EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEE
T ss_pred             EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEE
Confidence            322  23455666665541          111 1221 111234579999999 66665432             34555


Q ss_pred             EEecCCCCC------ccceEeec-CCeeEEEeCCCCCCEEEEE-eCCCcEEEEECCCCCCC-C--------CCCCCccce
Q 010748          336 MKDARISTH------SGFKWAVA-ADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSD-P--------DSTSQQSSF  398 (502)
Q Consensus       336 iwd~~~~~~------~~~~~~~~-~~v~~v~~~~~~~~~~~~~-~~dg~v~i~d~~~~~~~-~--------~~~~~~~~~  398 (502)
                      -.+....-.      ....+... .....++|+|++. ++++- +.++.=.+.-+..+... +        ......++.
T Consensus       178 Ri~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~  256 (347)
T 3das_A          178 RMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA  256 (347)
T ss_dssp             EECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred             EEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence            555442200      01122211 2356789999654 44332 22332223223322110 0        011123455


Q ss_pred             EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC
Q 010748          399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg  472 (502)
                      .+..+....+.++|.. + .+++..-..+.|....+.....  .....+....+.+..++..|||...+++...+|
T Consensus       257 ~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~~g  330 (347)
T 3das_A          257 QWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNTDG  330 (347)
T ss_dssp             EECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred             ecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCCCC
Confidence            5554434667888874 3 5666655566676666654431  112223344578999999999973333333343

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.19  E-value=0.16  Score=44.05  Aligned_cols=185  Identities=8%  Similarity=0.023  Sum_probs=94.7

Q ss_pred             CcEEEEEecCCcEEEEeCCCCe------eeEeecc-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc----
Q 010748          279 RNILASASADKQVKIWDVAAGK------CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----  347 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~------~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----  347 (502)
                      ..+|+....| +|+.=....+.      ...++-. -=..+..++|+|++ .+.++  .+|.+.-.+..+......    
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccc
Confidence            4567777777 66655554443      1222211 12477899999977 54444  677766666544322211    


Q ss_pred             -eEee--cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-cCCCeeEEEEcCCCCCEEEEE
Q 010748          348 -KWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       348 -~~~~--~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~  423 (502)
                       ....  -....++.|.|++.  |+++ .||.|+-++-.+.....-.   ..-..+.. -=..+..|.|.|+| .+.+..
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~--LYav-~dG~iyr~~pP~~~~~~Wl---~~a~~vg~~gw~~~~~lff~p~G-~Lyav~  152 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGY--LYAV-SKDKLYKASPPQSDTDNWI---ARATEVGSGGWSGFKFLFFHPNG-YLYAVH  152 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSC--EEEE-ETTEEEEESCCCSTTCCHH---HHSEEEECSSGGGEEEEEECTTS-CEEEEE
T ss_pred             cEecccccccceEEEECCCCC--EEEe-CCCEEEEeCCCcCCCCcee---ccccEeccCCCCceEEEEECCCc-eEEEEe
Confidence             1110  01147899999764  4444 5699887775432110000   00011111 11467999999987 555444


Q ss_pred             eCCCcEEEEECCCCCe-----eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          424 STDKMVKLWDLSNNQP-----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                        |+.++-+.......     .........-...+.+.|.+++. ++++.  +|  ++|....
T Consensus       153 --dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g--~~Y~~~~  208 (236)
T 1tl2_A          153 --GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GG--KFYEDYP  208 (236)
T ss_dssp             --TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TT--EEEEESC
T ss_pred             --CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc-EEEEe--CC--eEEecCC
Confidence              77754433332110     00111112223455577999997 45543  66  4554433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.18  E-value=0.34  Score=45.93  Aligned_cols=64  Identities=13%  Similarity=0.035  Sum_probs=32.6

Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ....++|. .+ .++++....+.|...++........   ......+......+..+++.|+| .++++.
T Consensus       269 ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~---~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~  332 (352)
T 2ism_A          269 PPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWR---VLRVETALSGFGRLREVQVGPDG-ALYVTT  332 (352)
T ss_dssp             CEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEE---EEEEEEEEESSCCEEEEEECTTS-CEEEEE
T ss_pred             CCcceEEE-CC-EEEEEECCCCEEEEEEECCCCccee---ecchheecccCCCeeEEEECCCC-cEEEEE
Confidence            34566663 23 3555555666777777654310000   00011221223567889999987 555544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.08  E-value=0.45  Score=52.81  Aligned_cols=197  Identities=11%  Similarity=0.137  Sum_probs=119.7

Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-ee
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV  351 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~  351 (502)
                      -.||. .++||.=. ..++.|+|+.+...+.++.. ...|.--.|-...  .|+-.+ +..|..|++.....+...+ .+
T Consensus        72 IMnP~-~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           72 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             ccCCC-cceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC--eeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            35676 55665554 67899999999888777764 4567777786654  333332 5689999997543332222 22


Q ss_pred             ----cCCeeEEEeCCCCCCEEEEEe------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEc--CCCCCE
Q 010748          352 ----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN--PLVPNL  419 (502)
Q Consensus       352 ----~~~v~~v~~~~~~~~~~~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~~  419 (502)
                          ...|..-..+++...++++|-      -.|.+.+|.+...          ....+.+|.+.-..+...  +....+
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~----------~sQ~iegha~~F~~~~~~~~~~~~~l  215 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAEESTL  215 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc----------cchhhhHhHhhhheeccCCCCCCceE
Confidence                456777778888777777764      4578999998764          233444554433333222  111123


Q ss_pred             EEEEeC---CCcEEEEECCCC---CeeE----E-EEec--CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          420 LATGST---DKMVKLWDLSNN---QPSC----I-ASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       420 l~t~s~---dg~i~vwd~~~~---~~~~----~-~~~~--~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      ++.+..   .+.++|-++...   .+..    + ..++  .......++..++... ++..-+.-|.|.+||+.|+.++.
T Consensus       216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhh
Confidence            332222   267888887543   1100    0 0111  1133445778888776 57777889999999999999874

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.99  E-value=0.78  Score=44.12  Aligned_cols=141  Identities=17%  Similarity=0.211  Sum_probs=87.7

Q ss_pred             CCcEEEEeCCCCeeeEeeccC----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-----------ceEe--
Q 010748          288 DKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-----------FKWA--  350 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----------~~~~--  350 (502)
                      ++.||.-++.....-+.+..-    -..|..+..+|.| .+|+.. .+..|.|..+..+....           ..+.  
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            367887787744333333321    2357889999999 666665 45688888876322111           1111  


Q ss_pred             -----ecCCeeEEEeCCCCCC--EEEEEeCCCcEEEEECCCCCCCCC-CCCCccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748          351 -----VAADVESLAWDPHAEH--SFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       351 -----~~~~v~~v~~~~~~~~--~~~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                           ...+|..+.|+|-+..  .+++-..|+.|++||+......+. .......+.+......|.+++|.+.+ -.|..
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYv  196 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG-LTLYC  196 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS-SCEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC-cEEEE
Confidence                 2467999999997543  899999999999999987321110 00001112222334678999999965 66666


Q ss_pred             Ee--CCCcEEE
Q 010748          423 GS--TDKMVKL  431 (502)
Q Consensus       423 ~s--~dg~i~v  431 (502)
                      .+  ..|-|+-
T Consensus       197 l~~t~~GDIYA  207 (452)
T 3pbp_A          197 LNTTEGGDIFA  207 (452)
T ss_dssp             EECTTSCEEEE
T ss_pred             EecCCCCCEEE
Confidence            55  6777764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.97  E-value=0.29  Score=46.36  Aligned_cols=57  Identities=11%  Similarity=0.034  Sum_probs=31.1

Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC------cEEEEECCCCccccc
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLSDAGISN  487 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg------~i~vwd~~~~~~~~~  487 (502)
                      .+.+||+.+.+...+..+......-.++.  -++. +++.||.++      .|.++++.+++.+..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNS-LLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEE--ETTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEE--eCCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            47899999877655554443322222222  3455 788888653      366668888776643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.87  E-value=1.4  Score=42.46  Aligned_cols=142  Identities=12%  Similarity=0.155  Sum_probs=83.7

Q ss_pred             CCcEEEEecCCCCCccceEeec-----CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC-C--CCccceEEec
Q 010748          331 DRSVVMKDARISTHSGFKWAVA-----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-T--SQQSSFTLHA  402 (502)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~-~--~~~~~~~~~~  402 (502)
                      ++.||..++..... ......+     ..+..+..+|+|. +++.. .+..|.+..+..+...... .  .....+.+..
T Consensus        40 ~n~iR~~~i~~~~~-Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l  116 (452)
T 3pbp_A           40 DNIIRWYNVLTDSL-YHSLNFSRHLVLDDTFHVISSTSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI  116 (452)
T ss_dssp             TTEEEEEETTTCSS-CEEEECTTTCCCCTTCEEEECTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred             CCEEEEEECCCCCc-ceEEecCcccccCceeEEEECCCCC-EEEEe-cCCeEEEEEecCccccCcccccccccceeEEEc
Confidence            35666666653321 1122222     2578899999876 44444 4668999988843211110 0  0011223322


Q ss_pred             ------cCCCeeEEEEcCCCC--CEEEEEeCCCcEEEEECCCCCeeEE--------EEecCCCCcEEEEEEcCCCCcEEE
Q 010748          403 ------HDKAVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCI--------ASRNPKAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       403 ------h~~~v~~l~~sp~~~--~~l~t~s~dg~i~vwd~~~~~~~~~--------~~~~~~~~~v~~~~~spd~~~ll~  466 (502)
                            ...+|..+.|+|.+.  ..|++-..|+.|++||+......+.        +........|.+++|.+++- .|.
T Consensus       117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~l-TLY  195 (452)
T 3pbp_A          117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGL-TLY  195 (452)
T ss_dssp             GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSS-CEE
T ss_pred             CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCc-EEE
Confidence                  256799999999653  4899999999999999986321122        11122235688999998664 455


Q ss_pred             EEe--CCCcEEE
Q 010748          467 IGG--SKGKLEI  476 (502)
Q Consensus       467 sg~--~dg~i~v  476 (502)
                      ...  ..|.|+-
T Consensus       196 vl~~t~~GDIYA  207 (452)
T 3pbp_A          196 CLNTTEGGDIFA  207 (452)
T ss_dssp             EEECTTSCEEEE
T ss_pred             EEecCCCCCEEE
Confidence            544  5676654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.71  E-value=0.51  Score=43.77  Aligned_cols=185  Identities=10%  Similarity=0.078  Sum_probs=88.0

Q ss_pred             CcEEEEEec----CC-------cEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC-------CcEEEEe
Q 010748          279 RNILASASA----DK-------QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKD  338 (502)
Q Consensus       279 ~~~l~sgs~----dg-------~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d-------g~i~iwd  338 (502)
                      +.+++.|+.    ++       .+.+||+.+.+-..  .+.........+.+  ++ .+++.|+.+       ..+.+||
T Consensus        57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd  133 (318)
T 2woz_A           57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYD  133 (318)
T ss_dssp             SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEE
T ss_pred             CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEe
Confidence            457777763    12       17788987765332  12111111222222  34 677777754       2477788


Q ss_pred             cCCCCCccceEeec---CCeeEEEeCCCCCCEEEEEeC------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeE
Q 010748          339 ARISTHSGFKWAVA---ADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       339 ~~~~~~~~~~~~~~---~~v~~v~~~~~~~~~~~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                      +.+.+-... ....   ....++..   +..+++.|+.      -..+.+||+.+..       ...+..+........+
T Consensus       134 ~~~~~W~~~-~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~  202 (318)
T 2woz_A          134 PVAAKWSEV-KNLPIKVYGHNVISH---NGMIYCLGGKTDDKKCTNRVFIYNPKKGD-------WKDLAPMKTPRSMFGV  202 (318)
T ss_dssp             TTTTEEEEE-CCCSSCEESCEEEEE---TTEEEEECCEESSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCEE
T ss_pred             CCCCCEeEC-CCCCCcccccEEEEE---CCEEEEEcCCCCCCCccceEEEEcCCCCE-------EEECCCCCCCcccceE
Confidence            775431110 0001   11112222   2345666653      2358899987641       1111111111111122


Q ss_pred             EEEcCCCCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-------------
Q 010748          410 ISYNPLVPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-------------  471 (502)
Q Consensus       410 l~~sp~~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-------------  471 (502)
                      +.+  ++ .+++.|+.+     ..+.+||+.+.+...+............+.+  ++. +++.||.+             
T Consensus       203 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~~~~  276 (318)
T 2woz_A          203 AIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGS-LYAIGGFAMIQLESKEFAPTE  276 (318)
T ss_dssp             EEE--TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCCBC----CCBCCB
T ss_pred             EEE--CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCE-EEEECCeeccCCCCceeccce
Confidence            222  23 677777653     3477899988775443333222222222222  344 67777754             


Q ss_pred             -CcEEEEECCCCc
Q 010748          472 -GKLEIWDTLSDA  483 (502)
Q Consensus       472 -g~i~vwd~~~~~  483 (502)
                       ..+.+||+.+.+
T Consensus       277 ~~~v~~yd~~~~~  289 (318)
T 2woz_A          277 VNDIWKYEDDKKE  289 (318)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             eeeEEEEeCCCCE
Confidence             358888987643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.59  E-value=1.4  Score=40.63  Aligned_cols=148  Identities=10%  Similarity=0.068  Sum_probs=72.2

Q ss_pred             CcEEEEEecC--------CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeC-C-----CcEEEEecCCC
Q 010748          279 RNILASASAD--------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSF-D-----RSVVMKDARIS  342 (502)
Q Consensus       279 ~~~l~sgs~d--------g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~-d-----g~i~iwd~~~~  342 (502)
                      +.+++.|+.+        ..+.+||+.+.+-..  .+........++.  .++ .+++.|+. +     ..+.+||+.+.
T Consensus        99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT-EEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC-EEEEEeCCCCCCcccceEEEEeCCCC
Confidence            4566677642        458999998765322  2221111122222  233 67777776 2     46888888764


Q ss_pred             CCccce--EeecCCeeEEEeCCCCCCEEEEEeCCC-----cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          343 THSGFK--WAVAADVESLAWDPHAEHSFVVSLEDG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       343 ~~~~~~--~~~~~~v~~v~~~~~~~~~~~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      +-....  ........++.+   +..+++.|+.++     .+.+||+.+..       ...+..+.........+.+  +
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~  243 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK-------WAPFEAFPQERSSLSLVSL--V  243 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--T
T ss_pred             eEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe-------EEECCCCCCcccceeEEEE--C
Confidence            311100  001111222333   234677776544     48888887641       1111111111111222222  2


Q ss_pred             CCCEEEEEeCCC--------------cEEEEECCCCCeeEE
Q 010748          416 VPNLLATGSTDK--------------MVKLWDLSNNQPSCI  442 (502)
Q Consensus       416 ~~~~l~t~s~dg--------------~i~vwd~~~~~~~~~  442 (502)
                      + .+++.|+.++              .+.+||+.+.+...+
T Consensus       244 ~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          244 G-TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             T-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             C-EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            3 6777777532              367888887765443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.50  E-value=3  Score=43.88  Aligned_cols=190  Identities=10%  Similarity=0.085  Sum_probs=110.0

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (502)
                      ..|.+|.-..+ + .|..|+.+| +..||..+.+...........|.++.. .++  .|..++.+ .|..++..+.....
T Consensus        63 ~~i~~i~~d~~-g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g--~lWigt~~-Gl~~~~~~~~~~~~  135 (758)
T 3ott_A           63 TRIYCGVIIDN-T-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD--TLWLGALN-GLYTYQLQSRKLTS  135 (758)
T ss_dssp             SCEEEEEEETT-T-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT--EEEEEETT-EEEEEETTTCCEEE
T ss_pred             ceEEEEEEcCC-C-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC--cEEEEcCC-cceeEeCCCCeEEE
Confidence            46888877666 3 566666655 789998876543311112335777754 344  45556665 57888876644322


Q ss_pred             ceE----eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe--c----cCCCeeEEEEcCCC
Q 010748          347 FKW----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--A----HDKAVCTISYNPLV  416 (502)
Q Consensus       347 ~~~----~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--~----h~~~v~~l~~sp~~  416 (502)
                      ...    .....|.++....++.  +.+|+.. -|..|+..+..          ...+.  .    ....|.++...+.+
T Consensus       136 ~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~i~~d~~~  202 (758)
T 3ott_A          136 FDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYN-GLCRYIPSNGK----------FEGIPLPVHSSQSNLFVNSLLEDTTR  202 (758)
T ss_dssp             ECHHHHCCSCSCEEEEEECTTCC--EEEEETT-EEEEEETTTTE----------EEEECCCCCTTCSSCCEEEEEEETTT
T ss_pred             eccCCCCcCCCeEEEEEEcCCCC--EEEEeCC-CHhhCccCCCc----------eEEecCCCccccccceeEEEEEECCC
Confidence            100    1124577887777553  5556654 47778876541          11111  1    12247888777765


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          417 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                       ..|..|+. +-+..++..+.+......+.  ...|.++...+++.  |-.|+. +-|.+++..++.
T Consensus       203 -~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i~~d~~g~--lWigT~-~Gl~~~~~~~~~  262 (758)
T 3ott_A          203 -QCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSLALDGNGD--LLAGTD-NGLYVYHNDTTP  262 (758)
T ss_dssp             -TEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEEEECTTCC--EEEEET-TEEEEECCTTSC
T ss_pred             -CEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEEEEcCCCC--EEEEeC-CceeEEecCCCc
Confidence             54444553 45888998776532222221  34588898888887  333454 458888876653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.42  E-value=3.2  Score=43.67  Aligned_cols=186  Identities=11%  Similarity=0.166  Sum_probs=102.5

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      .|.++.. .+ + .|..|+.+ -|..++..+++......    .....|.++....++ .+. .|+.. -|..++..+..
T Consensus       104 ~i~~i~~-~~-g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lW-igt~~-Gl~~~~~~~~~  176 (758)
T 3ott_A          104 DVRTMAL-QG-D-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDN-QIY-VGTYN-GLCRYIPSNGK  176 (758)
T ss_dssp             CEEEEEE-ET-T-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTC-CEE-EEETT-EEEEEETTTTE
T ss_pred             eEEEEEe-cC-C-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCC-CEE-EEeCC-CHhhCccCCCc
Confidence            4666654 33 3 45556655 58889987665432201    123468888888777 444 45554 47778776543


Q ss_pred             CccceEe-----ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          344 HSGFKWA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       344 ~~~~~~~-----~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      .......     ....|.++...+.+. .+.+|+. +-|..++..+...       .....+  ....|.++...+++ .
T Consensus       177 ~~~~~~~~~~~~~~~~i~~i~~d~~~~-~lWigt~-~Gl~~~~~~~~~~-------~~~~~l--~~~~i~~i~~d~~g-~  244 (758)
T 3ott_A          177 FEGIPLPVHSSQSNLFVNSLLEDTTRQ-CVWIGTE-GYLFQYFPSTGQI-------KQTEAF--HNNSIKSLALDGNG-D  244 (758)
T ss_dssp             EEEECCCCCTTCSSCCEEEEEEETTTT-EEEEEEE-EEEEEEETTTTEE-------EEEEEE--EEEEEEEEEECTTC-C
T ss_pred             eEEecCCCccccccceeEEEEEECCCC-EEEEEEC-CCCeEEcCCCCeE-------EeccCC--CCCeEEEEEEcCCC-C
Confidence            2211111     112377887776544 4556664 4588888765410       111111  23457888877765 3


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEec-----CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          419 LLATGSTDKMVKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~spd~~~ll~sg~~dg~i~vw  477 (502)
                       |..|+.. -+.+++..+.+........     .....|.++....+|.  |-.|+..| +.++
T Consensus       245 -lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWiGT~~G-l~~~  303 (758)
T 3ott_A          245 -LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN--IWLGTDYG-ISLS  303 (758)
T ss_dssp             -EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC--EEEEESSS-EEEE
T ss_pred             -EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC--EEEEeCCc-cccc
Confidence             4444544 5888888766532221111     1234689999888887  33455555 4443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.15  E-value=0.89  Score=42.88  Aligned_cols=61  Identities=13%  Similarity=0.043  Sum_probs=28.4

Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC------cEEEEECCCCCeeEEEEec
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK------MVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg------~i~vwd~~~~~~~~~~~~~  446 (502)
                      .+.+||+.+..       ...+..+......-.++.+  ++ .+++.|+.++      .|.++++.+++......+.
T Consensus       286 ~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          286 STDIHLWHNGK-------WDKSGELSQGRAYGVSLPW--NN-SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             CCEEEECC----------CEEEEECSSCCBSSEEEEE--TT-EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             eEEEEecCCCc-------eeeCCCCCCCcccceeEEe--CC-EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            47788887642       2222222222222223332  33 7788888653      3566688887754443333

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.73  E-value=0.51  Score=49.32  Aligned_cols=194  Identities=10%  Similarity=0.137  Sum_probs=96.9

Q ss_pred             CcEEEEEecC----CcEEEEeCCCCeeeEee-c------cCCCCeEEEEEcC-CCCcEEEEEeCCC------cEEEEecC
Q 010748          279 RNILASASAD----KQVKIWDVAAGKCNLTL-E------HHTDKVQAVAWNH-HSPQILLSGSFDR------SVVMKDAR  340 (502)
Q Consensus       279 ~~~l~sgs~d----g~v~vwd~~~~~~~~~~-~------~h~~~v~~l~~~~-~~~~~l~s~s~dg------~i~iwd~~  340 (502)
                      +.+++.|+.+    ..+.+||+.+++-...- .      .....-.+++..+ ++ .+++.|+.++      .+.+||+.
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeCC
Confidence            4477777753    46889998877533221 1      0111112333333 45 6777777543      47788887


Q ss_pred             CCCCccce-EeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceE---EeccCCCeeEEEEcC
Q 010748          341 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFT---LHAHDKAVCTISYNP  414 (502)
Q Consensus       341 ~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~sp  414 (502)
                      +..-.... ......-.+++...+ ..+++.|+.++  .+.+||..+..       ...+..   +......-.++.+..
T Consensus       477 t~~W~~~~~~p~~R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~-------W~~~~~~g~~p~~r~~~~a~v~~~  548 (695)
T 2zwa_A          477 TREWSMIKSLSHTRFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEI-------FKDVTPKDEFFQNSLVSAGLEFDP  548 (695)
T ss_dssp             TTEEEECCCCSBCCBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTE-------EEECCCSSGGGGSCCBSCEEEEET
T ss_pred             CCcEEECCCCCCCcccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCc-------eEEccCCCCCCCcccceeEEEEeC
Confidence            64211100 001111122222223 44777776544  68999988652       011110   111122223355555


Q ss_pred             CCCCEEEEEeC--C-----CcEEEEECCCCC------eeEEEEec-CCCCcEEEEEEcCCCCcEEEEEeCC--------C
Q 010748          415 LVPNLLATGST--D-----KMVKLWDLSNNQ------PSCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSK--------G  472 (502)
Q Consensus       415 ~~~~~l~t~s~--d-----g~i~vwd~~~~~------~~~~~~~~-~~~~~v~~~~~spd~~~ll~sg~~d--------g  472 (502)
                      ....+++.|+.  +     +.+.+||+.+..      ...+.... ...... ++....++. +++.||.+        .
T Consensus       549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~-iyv~GG~~~~~~~~~~~  626 (695)
T 2zwa_A          549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRK-LLIVGGTSPSGLFDRTN  626 (695)
T ss_dssp             TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTE-EEEECCBCSSCCCCTTT
T ss_pred             CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCE-EEEECCccCCCCCCCCC
Confidence            42367777765  2     358899998877      33333311 111111 222333344 67778743        4


Q ss_pred             cEEEEECCCCc
Q 010748          473 KLEIWDTLSDA  483 (502)
Q Consensus       473 ~i~vwd~~~~~  483 (502)
                      .|.+||+.+..
T Consensus       627 ~v~~yd~~t~~  637 (695)
T 2zwa_A          627 SIISLDPLSET  637 (695)
T ss_dssp             SEEEEETTTTE
T ss_pred             eEEEEECCCCe
Confidence            68999998754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.24  E-value=0.095  Score=49.23  Aligned_cols=194  Identities=10%  Similarity=0.014  Sum_probs=100.3

Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEeeccC-CCCeEEEEEc--CCCCcEEEEE-eCCCcEEEEecCCCCCccceEeecCCe
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWN--HHSPQILLSG-SFDRSVVMKDARISTHSGFKWAVAADV  355 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~--~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v  355 (502)
                      .+++.++.||.|.-+|..+|+...++... ..++....-.  +.+...++.. +.||.|..++..++... .......-+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccce
Confidence            37899999999999999999999988653 1233221111  1121333333 58999999998765321 111111111


Q ss_pred             e--EEEeC-------C---CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC--CC-----eeEEEEc---
Q 010748          356 E--SLAWD-------P---HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KA-----VCTISYN---  413 (502)
Q Consensus       356 ~--~v~~~-------~---~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~-----v~~l~~s---  413 (502)
                      .  -+...       +   .....+++|+.+|.+...|++++         +.++.+....  ..     ..|....   
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG---------~~~W~~~~~~~~~~~~~~~e~~~~~~d~~  160 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG---------EIISAFGPGSKNGYFGSQSVDCSPEEKIK  160 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC---------CEEEEESTTCBCC----------------
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC---------cEEEEEecCCCcccccccccccccccccc
Confidence            0  01110       0   01337899999999999999998         6666665321  10     1111111   


Q ss_pred             C-CCCCEEEEEeCCCcEEEEECCCCCeeE--EEEecCCCC--cEE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          414 P-LVPNLLATGSTDKMVKLWDLSNNQPSC--IASRNPKAG--AVF-SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       414 p-~~~~~l~t~s~dg~i~vwd~~~~~~~~--~~~~~~~~~--~v~-~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      . .....|+.+..+..+.+.+ ++++...  .........  .+. +-..+.++.+  +.++.+|.|.-+|..++..+-
T Consensus       161 ~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~--~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          161 LQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC--IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             ----CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC--EEEETTTEEEEECSTTCCEEE
T ss_pred             cccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE--EEECCCCEEEEEECCCCcEEE
Confidence            0 1124566666666666655 3332100  001110000  000 0001224553  346788888888888777654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.95  E-value=3.8  Score=37.67  Aligned_cols=174  Identities=7%  Similarity=-0.010  Sum_probs=86.1

Q ss_pred             EeccCCCcEEEEEe----cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748          273 AWNKEFRNILASAS----ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       273 ~~~~~~~~~l~sgs----~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (502)
                      .|++.+. .|+-..    ....|...++... ....+..+..    ..|++.+..+..+......|.+.++....... .
T Consensus       110 ~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~-l  182 (302)
T 3s25_A          110 YASLIGN-YIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL-F  182 (302)
T ss_dssp             EEEEETT-EEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE-E
T ss_pred             EEEEeCC-EEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE-E
Confidence            5677744 555443    3345556666533 3344433332    34566774444454446778877776554332 1


Q ss_pred             EeecCCeeEEEeCCCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe--C
Q 010748          349 WAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--T  425 (502)
Q Consensus       349 ~~~~~~v~~v~~~~~~~~~~~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s--~  425 (502)
                        ..+... ..++|.+..++.+...+ ..|..-++...          ....+.  ...+  ..|+|.+ .+|+-++  .
T Consensus       183 --~~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~----------~~~~Lt--~~~~--~~~~~~g-~~Iy~~~~~~  244 (302)
T 3s25_A          183 --YDCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP----------NPVVLT--EANI--EHYNVYG-SLIFYQRGGD  244 (302)
T ss_dssp             --ECSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC----------CCEECS--CSCE--EEEEEET-TEEEEEECSS
T ss_pred             --eCCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC----------CeEEEe--CCCc--ceEEECC-CEEEEEECCC
Confidence              122222 33558777555554433 35555555543          122222  2223  3367777 5555543  2


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      .+.|..-++.......+..  .   .+..+  ++.+.++..+-...+.|..-+
T Consensus       245 ~~~i~~~~~DG~~r~~l~~--~---~~~~i--~i~~d~Iy~td~~~~~i~~~~  290 (302)
T 3s25_A          245 NPALCVVKNDGTGFKELAK--G---EFCNI--NVTSQYVYFTDFVSNKEYCTS  290 (302)
T ss_dssp             SCEEEEEETTSCCCEEEEE--S---CEEEE--EECSSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEEECCCCccEEeeC--C---ccceE--EEeCCEEEEEECCCCeEEEEE
Confidence            4567777776554323322  1   24333  445555555554455554444

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.88  E-value=5.8  Score=39.57  Aligned_cols=261  Identities=9%  Similarity=0.101  Sum_probs=135.4

Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchh------hhhhccccCCcccccccccCcccceeeEEec---cCCCcEE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN---KEFRNIL  282 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~~~~l  282 (502)
                      +.+|+..|.|+|+-+.+++.+..+.++......      ..++.....   .....-..|.   ..+++.   -+|+.++
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~---~~~~~gD~HH---p~~S~tdg~yDGrylf  146 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDS---AKFLNGDCHH---PHISMTDGKYDGKYLF  146 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGG---GGCCCCCCCC---CEEEEETTEEEEEEEE
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcC---CCccCCCcCC---CcccccCCeeeeEEEE
Confidence            678999999999999999888776666543322      000000000   0000001111   122332   2334334


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEc--CCCCcEEEEEeC-------CCcE---------EEE---ecC
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWN--HHSPQILLSGSF-------DRSV---------VMK---DAR  340 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~~l~s~s~-------dg~i---------~iw---d~~  340 (502)
                      +-.-....|-.-++...++-..+. .....+.+++|-  |.. .++++++.       ||..         .+|   |..
T Consensus       147 iNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T-~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~  225 (638)
T 3sbq_A          147 INDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHT-KYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAE  225 (638)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBC-CEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETT
T ss_pred             EecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCc-cEEEecceeeccCCCCCcccccCChhhceEEEEEcCC
Confidence            444456778888888887765553 245677888886  444 56776664       2221         111   111


Q ss_pred             CCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC--------------CcEEEEECCCC-------CCCCCC--------
Q 010748          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED--------------GTIKGFDIRTA-------KSDPDS--------  391 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d--------------g~v~i~d~~~~-------~~~~~~--------  391 (502)
                      +.+ +.......+....+...+++...|.++...              ..+.++++...       ......        
T Consensus       226 tm~-v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD  304 (638)
T 3sbq_A          226 TME-MAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLD  304 (638)
T ss_dssp             TCS-EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred             ccE-EEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEc
Confidence            111 111112233444455566555333333211              12444443210       000000        


Q ss_pred             -CC----CccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-----------CeeEEEEecCCCCcEEEE
Q 010748          392 -TS----QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-----------QPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       392 -~~----~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~-----------~~~~~~~~~~~~~~v~~~  455 (502)
                       ..    ...+..+..-......+.++|+|..++++|-.+.++.|+|+...           +-........ .-.....
T Consensus       305 ~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt  383 (638)
T 3sbq_A          305 GRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHT  383 (638)
T ss_dssp             CSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEE
T ss_pred             cccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEE
Confidence             00    01122222233455788999999555566667899999998741           1112333333 3446789


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          456 AFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       456 ~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      +|.++|. ...|---|..|.-|++...
T Consensus       384 ~Fd~~G~-aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          384 TFDGRGN-AYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EECSSSE-EEEEETTTTEEEEEEHHHH
T ss_pred             EECCCCc-eEeeeeecceEEEEeccHH
Confidence            9999994 6777778999999999653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.87  E-value=4.1  Score=39.92  Aligned_cols=110  Identities=12%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---------ecCCeeEEEeCCC---CCCEEEEEeC----
Q 010748          310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---------VAADVESLAWDPH---AEHSFVVSLE----  373 (502)
Q Consensus       310 ~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~v~~v~~~~~---~~~~~~~~~~----  373 (502)
                      ....+|+|.|++ +++++-...+.|++++...+.... ...         ....+..|+|+|+   +..++++-+.    
T Consensus        27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeE-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            456799999999 666554433468888765433211 111         1345678999995   4433333332    


Q ss_pred             --------CCcEEEEECCCCCCCCCCCCCccceE-Eec-cCCCeeEEEEcCCCCCEEEEEe
Q 010748          374 --------DGTIKGFDIRTAKSDPDSTSQQSSFT-LHA-HDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       374 --------dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~-h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                              ...|.-|+........  .....+.. +.. .......|+|.|+| .+.++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~--~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTL--EKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEE--EEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCc--CCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                    2356666554321000  00111221 221 12347899999998 6666544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.86  E-value=5.3  Score=39.11  Aligned_cols=58  Identities=12%  Similarity=0.097  Sum_probs=32.0

Q ss_pred             CEEEEEeCCCcEEEEECCC-CCee--EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEE
Q 010748          418 NLLATGSTDKMVKLWDLSN-NQPS--CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE  475 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~-~~~~--~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~  475 (502)
                      .++++.-..+.|....+.. +...  ....+....+.+..|++.|||..|+++-...|.|.
T Consensus       370 ~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~  430 (454)
T 1cru_A          370 TLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQ  430 (454)
T ss_dssp             EEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred             cEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCc
Confidence            3444444456677777664 2211  11222223468999999999963344444556544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.75  E-value=1.5  Score=40.49  Aligned_cols=184  Identities=14%  Similarity=0.145  Sum_probs=86.1

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeE-eeccCCCCeEEEEEcCCCCcEEEEEeC----CC-------cEEEEecCCCCCccc-
Q 010748          281 ILASASADKQVKIWDVAAGKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSF----DR-------SVVMKDARISTHSGF-  347 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~-  347 (502)
                      +++.|+.  .+.+||..+++-.. .+..............++ .+++.|+.    ++       .+.+||..+.+-... 
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            4455553  48899998876433 121111111222223344 67777873    12       167788765432110 


Q ss_pred             -eEeecCCeeEEEeCCCCCCEEEEEeCC-------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          348 -KWAVAADVESLAWDPHAEHSFVVSLED-------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       348 -~~~~~~~v~~v~~~~~~~~~~~~~~~d-------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                       ..........+.+   +..+++.|+.+       ..+.+||..+..       ...+..+...... .+++. .++ .+
T Consensus        95 ~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~-~~~~~-~~~-~i  161 (318)
T 2woz_A           95 PLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAK-------WSEVKNLPIKVYG-HNVIS-HNG-MI  161 (318)
T ss_dssp             CBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTE-------EEEECCCSSCEES-CEEEE-ETT-EE
T ss_pred             CCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCC-------EeECCCCCCcccc-cEEEE-ECC-EE
Confidence             0001111222233   23466666643       247888887641       0111001100011 11222 233 66


Q ss_pred             EEEEeC------CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCc
Q 010748          420 LATGST------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWDTLSDA  483 (502)
Q Consensus       420 l~t~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg-----~i~vwd~~~~~  483 (502)
                      ++.|+.      -..+.+||+.+.+...+...........++.+  ++. +++.||.++     .+.+||+.+..
T Consensus       162 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          162 YCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCCe
Confidence            666654      23589999988765444332222221222222  344 677777543     47788887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.67  E-value=4.6  Score=37.73  Aligned_cols=103  Identities=6%  Similarity=0.071  Sum_probs=56.0

Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEeeccCC--CC-----eEEEEEc---C-CCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTLEHHT--DK-----VQAVAWN---H-HSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~--~~-----v~~l~~~---~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (502)
                      ..+++|+.+|.+...|+.+|+.+..+....  ..     ..|....   . .....++.+..+..+.+.+ +++..-...
T Consensus       112 g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~  190 (339)
T 2be1_A          112 EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVT  190 (339)
T ss_dssp             EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSCCCCCE
T ss_pred             CEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEEe
Confidence            478999999999999999999999886321  10     1111111   0 1114677777777777766 333210000


Q ss_pred             Ee-ecCC-ee-----EEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          349 WA-VAAD-VE-----SLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       349 ~~-~~~~-v~-----~v~~~~~~~~~~~~~~~dg~v~i~d~~~~  385 (502)
                      .. .... +.     +-..+.++  .+++++.+|.|..+|..++
T Consensus       191 ~s~~~~~~~~~~~~~~~~~s~Dg--~~~~~~~dg~v~A~d~~~G  232 (339)
T 2be1_A          191 YSTWQQNVLDVPLALQNTFSKDG--MCIAPFRDKSLLASDLDFR  232 (339)
T ss_dssp             EEEEECCTTTHHHHTTCSSCSSS--CCEEEETTTEEEEECSTTC
T ss_pred             cccccccccccccccccccccCC--cEEEECCCCEEEEEECCCC
Confidence            00 0000 00     00001122  3356888999999998876

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.66  E-value=1.1  Score=38.92  Aligned_cols=102  Identities=5%  Similarity=-0.007  Sum_probs=59.6

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee------eEeec--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKC------NLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~------~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~  339 (502)
                      .+.+|+|+|+ +.+.+.  .+|.+.-.+..+...      -..+-  +.+. ..++.|.|++ .+.++  .||.|.-++-
T Consensus        42 ~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEESC
T ss_pred             cceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeCC
Confidence            6779999997 444444  677776666544221      11110  1111 4789999999 54444  5698887775


Q ss_pred             CCCCCccc-----eEee--cCCeeEEEeCCCCCCEEEEEeCCCcEEE
Q 010748          340 RISTHSGF-----KWAV--AADVESLAWDPHAEHSFVVSLEDGTIKG  379 (502)
Q Consensus       340 ~~~~~~~~-----~~~~--~~~v~~v~~~~~~~~~~~~~~~dg~v~i  379 (502)
                      .+......     ....  =..+..|.+.|++.  |++.. ++.++-
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~--Lyav~-dg~lyr  158 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY--LYAVH-GQQFYK  158 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC--EEEEE-TTEEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCce--EEEEe-CCcEEe
Confidence            43222211     1110  14689999999874  55555 887543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.23  E-value=3.1  Score=43.37  Aligned_cols=65  Identities=9%  Similarity=0.082  Sum_probs=39.8

Q ss_pred             CcEEEEEecCC--cEEEEeCCCCeeeEe-----eccCCCCeEEEEEcCCCCcEEEEEeCC-------CcEEEEecCCCC
Q 010748          279 RNILASASADK--QVKIWDVAAGKCNLT-----LEHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKDARIST  343 (502)
Q Consensus       279 ~~~l~sgs~dg--~v~vwd~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~l~s~s~d-------g~i~iwd~~~~~  343 (502)
                      +.+++.|+.++  .+.+||+.+.+-...     +........++.+......+++.|+.+       ..+.+||+.+..
T Consensus       501 ~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          501 GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            45777787655  699999987753221     111122233455565523677777762       358889988766

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.84  E-value=6.4  Score=37.03  Aligned_cols=209  Identities=11%  Similarity=0.035  Sum_probs=105.7

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe-eeEeec---cCCCCeEEEEEcCC---CCcEEEEEeC---C----C
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLE---HHTDKVQAVAWNHH---SPQILLSGSF---D----R  332 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-~~~~~~---~h~~~v~~l~~~~~---~~~~l~s~s~---d----g  332 (502)
                      .....|+|.|++ . |+.+...|.|++++ ..++ .+..+.   ........|+++|+   +..++++-+.   +    +
T Consensus        29 ~~P~~ia~~pdG-~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGG-R-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETT-E-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCCC-e-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            346789999994 3 55556679999997 4554 222221   12356889999997   4244444432   3    5


Q ss_pred             cEEEEecCCCC--C--ccce-Eee----cCCeeEEEeCCCCCCEEEEEeC-------------CCcEEEEECCCCCCCCC
Q 010748          333 SVVMKDARIST--H--SGFK-WAV----AADVESLAWDPHAEHSFVVSLE-------------DGTIKGFDIRTAKSDPD  390 (502)
Q Consensus       333 ~i~iwd~~~~~--~--~~~~-~~~----~~~v~~v~~~~~~~~~~~~~~~-------------dg~v~i~d~~~~~~~~~  390 (502)
                      .|..|+.....  .  .... ...    ......++|.|++. ++++.+.             .|.|.-++........+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            67777765431  1  0111 111    12346789999875 4444222             24566555542100000


Q ss_pred             CCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc---EEEEECCC--------C------CeeEEEEecCCCCcEE
Q 010748          391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM---VKLWDLSN--------N------QPSCIASRNPKAGAVF  453 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~---i~vwd~~~--------~------~~~~~~~~~~~~~~v~  453 (502)
                      ......++ ..+| .....++|+|....++++-...+.   |.+.....        +      ....+..+........
T Consensus       185 pf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          185 PFPNSPIW-SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             SSTTCCEE-EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence            00001111 1233 335789999943265555433221   33322111        0      0012223311224577


Q ss_pred             EEEEc-------CCCCcEEEEEeCCCcEEEEECCCC
Q 010748          454 SVAFS-------EDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       454 ~~~~s-------pd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      .++|.       .++. ++++.-..+.|...++...
T Consensus       263 G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             EEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGG
T ss_pred             ceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCC
Confidence            88884       4565 5665556678888888753

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.38  E-value=7.8  Score=36.90  Aligned_cols=188  Identities=11%  Similarity=0.001  Sum_probs=86.0

Q ss_pred             cEEEEEecCCcEEEEeCCC-CeeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEecCCCC--Cccce--
Q 010748          280 NILASASADKQVKIWDVAA-GKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARIST--HSGFK--  348 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~-~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg----~i~iwd~~~~~--~~~~~--  348 (502)
                      ..|..|...| +.+++... ++.-..+  ......|.+|.+.|..+..|.+++..|    .|...+-....  .....  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~  101 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA  101 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence            4677777777 55554332 2221111  122457999999984334455555554    34333211111  11000  


Q ss_pred             Ee---------ecCCeeEEEeCCCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe----------------c
Q 010748          349 WA---------VAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH----------------A  402 (502)
Q Consensus       349 ~~---------~~~~v~~v~~~~~~-~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~----------------~  402 (502)
                      ..         ....|.++++.|.+ +..+++++..+.|...+-....       ...+....                .
T Consensus       102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~t-------W~~~~~~~~~p~~~~~~~~~~~g~~  174 (394)
T 3b7f_A          102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGAS-------WEPVAGFNDHPMRRAWTGGEQDGTP  174 (394)
T ss_dssp             CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSB-------CEECHHHHTCTTHHHHHCCC----C
T ss_pred             CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCC-------eEECcCccCCccccccccccccCCC
Confidence            00         11247788898743 4467777666665544322110       01110000                1


Q ss_pred             cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecC-C--------CCcEEEEEEcCCCCcEEEEEeCCC
Q 010748          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNP-K--------AGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~-~--------~~~v~~~~~spd~~~ll~sg~~dg  472 (502)
                      ....+.+|.+.|..+..|+.+...+.|...+-.......+.. ... +        ...+.++.++|..+..|.++...+
T Consensus       175 ~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          175 DGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             CCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             CCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            123578899988543445555444444443222111111100 000 0        124889999997433455555444


Q ss_pred             cEEE
Q 010748          473 KLEI  476 (502)
Q Consensus       473 ~i~v  476 (502)
                       |..
T Consensus       255 -l~~  257 (394)
T 3b7f_A          255 -IYR  257 (394)
T ss_dssp             -EEE
T ss_pred             -EEE
Confidence             443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.31  E-value=7.9  Score=36.83  Aligned_cols=189  Identities=12%  Similarity=0.065  Sum_probs=88.9

Q ss_pred             cceeeEEeccCCCcEEEEEecCC----cEEEEeCCCCeeeEeec------c--------CCCCeEEEEEcCCC-CcEEEE
Q 010748          267 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLE------H--------HTDKVQAVAWNHHS-PQILLS  327 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg----~v~vwd~~~~~~~~~~~------~--------h~~~v~~l~~~~~~-~~~l~s  327 (502)
                      ..|.+|++.|.....|..+...|    .|...+ ..++.-..+.      .        ....|.+|++.|.+ +..|.+
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            56999999983233455555544    344332 2232212111      0        11257789998743 355666


Q ss_pred             EeCCCcEEEEecCCCC--Cccce----------------EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 010748          328 GSFDRSVVMKDARIST--HSGFK----------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  389 (502)
Q Consensus       328 ~s~dg~i~iwd~~~~~--~~~~~----------------~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~  389 (502)
                      ++..+.|...+-....  .....                ......+.+|.++|..+..++++...+.|...+-. +    
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G----  208 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-G----  208 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-T----
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-C----
Confidence            6666655544322111  11000                00123477899988544456666555544443211 1    


Q ss_pred             CCCCCccceEEec-----c--------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC---CcEE
Q 010748          390 DSTSQQSSFTLHA-----H--------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA---GAVF  453 (502)
Q Consensus       390 ~~~~~~~~~~~~~-----h--------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~v~  453 (502)
                           .....+..     +        ...+.+|.+.|..+..|+.++..+ |...+-.......+ ......   ..+.
T Consensus       209 -----~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW~~~-~~~l~~~~~~~~~  281 (394)
T 3b7f_A          209 -----TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVWKRI-GDAMPREVGDIGF  281 (394)
T ss_dssp             -----SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEEECG-GGGSCTTTCSCEE
T ss_pred             -----CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcceEC-CCCCCCCCccceE
Confidence                 11111100     0        134888999987556777776554 44443222211111 100111   3467


Q ss_pred             EEEEcCCCCcEEEEE
Q 010748          454 SVAFSEDSPFVLAIG  468 (502)
Q Consensus       454 ~~~~spd~~~ll~sg  468 (502)
                      ++.++|..+..|.++
T Consensus       282 ~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          282 PIVVHQRDPRTVWVF  296 (394)
T ss_dssp             EEEECSSCTTCEEEE
T ss_pred             EEEECCCCCCEEEEE
Confidence            888887432234434

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.02  E-value=8.1  Score=36.28  Aligned_cols=60  Identities=12%  Similarity=0.179  Sum_probs=34.2

Q ss_pred             CCeeEEEeCCC------CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc--eEE-eccCCCeeEEEEcCCCCCEEEE
Q 010748          353 ADVESLAWDPH------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS--FTL-HAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       353 ~~v~~v~~~~~------~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~--~~~-~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ..+..+.|...      ...++++....+.|...++...         ...  ..+ ......+..+++.|+| .++++
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~  339 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD---------KVTEDGRILTDRGQRIRDVRTGPDG-YLYVL  339 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT---------EEEEEEEESGGGCCCEEEEEECTTS-CEEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC---------eEeeeEEcccCCCCceeEEEECCCC-cEEEE
Confidence            34566666532      1335666666777877777643         111  112 1223578899999988 55443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.69  E-value=11  Score=35.30  Aligned_cols=153  Identities=13%  Similarity=0.095  Sum_probs=81.8

Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc------eEeecCCeeEEEeCCC---CCCEEEEE---eCCC
Q 010748          308 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF------KWAVAADVESLAWDPH---AEHSFVVS---LEDG  375 (502)
Q Consensus       308 h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------~~~~~~~v~~v~~~~~---~~~~~~~~---~~dg  375 (502)
                      .-.....|+|.|++ .++++--..|.|++++.........      ..........|+++|+   +. .|++.   ...+
T Consensus        30 gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-~lYv~yt~~~~~  107 (347)
T 3das_A           30 GLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH-MVYAYFTSASDN  107 (347)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC-EEEEEEECSSSE
T ss_pred             CCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCC-EEEEEEecCCCC
Confidence            34567899999999 6665554489999998654432111      0112456789999995   33 34443   2345


Q ss_pred             cEEEEECCCCCCC-CCCCCCccce-EEe-ccCCCeeEEEEcCCCCCEEEEEeC-------------CCcEEEEECCCCC-
Q 010748          376 TIKGFDIRTAKSD-PDSTSQQSSF-TLH-AHDKAVCTISYNPLVPNLLATGST-------------DKMVKLWDLSNNQ-  438 (502)
Q Consensus       376 ~v~i~d~~~~~~~-~~~~~~~~~~-~~~-~h~~~v~~l~~sp~~~~~l~t~s~-------------dg~i~vwd~~~~~-  438 (502)
                      .|.-|.+...... ........+. .+. ........|.|.|++ .+.++.+.             -|.|.-.+....- 
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            6666666542110 0000012222 222 112235679999998 66666542             2444444543220 


Q ss_pred             ------eeEEEEecCCCCcEEEEEEcCCCCcEEE
Q 010748          439 ------PSCIASRNPKAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       439 ------~~~~~~~~~~~~~v~~~~~spd~~~ll~  466 (502)
                            ...++. .+|.. ...++|+|++. |++
T Consensus       187 ~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~-L~~  217 (347)
T 3das_A          187 PGNPFPGSPVYS-YGHRN-VQGLAWDDKQR-LFA  217 (347)
T ss_dssp             TTCSSTTCCEEE-BCCSB-CCEEEECTTCC-EEE
T ss_pred             CCCCCCCCeEEe-eCCCC-cceEEECCCCC-EEE
Confidence                  011222 24433 55789999887 444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=89.65  E-value=11  Score=34.52  Aligned_cols=176  Identities=7%  Similarity=0.035  Sum_probs=86.0

Q ss_pred             cCCCcEEEEEe-cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-------------CcEEEEecCC
Q 010748          276 KEFRNILASAS-ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-------------RSVVMKDARI  341 (502)
Q Consensus       276 ~~~~~~l~sgs-~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-------------g~i~iwd~~~  341 (502)
                      .+++.+.++.. .++.|...+.. |.....+..  ..  +--+++++..+..+...+             ..|+..++..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETT-SCSCEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCC-CCCCEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            44443444332 24556666654 333333332  11  334577774444444443             3566666665


Q ss_pred             CCCccceEeecCCeeEEEeCCCCCCEEEEE---eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          342 STHSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      .....  . ....  +..|++.+..++++.   .....|+..++..          .....+..+..    ..+++.+..
T Consensus        98 ~~~~~--l-~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG----------s~~~~lt~~~~----~~~~~~g~~  158 (302)
T 3s25_A           98 HGSTV--L-DPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG----------EEKKKIKNHYL----FTCNTSDRY  158 (302)
T ss_dssp             CCCEE--E-ECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS----------CCCEEEESSCC----CCSEEETTE
T ss_pred             CcceE--e-ecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC----------CCeEEEeCCCc----eEeeEECCE
Confidence            54322  1 1122  235666666544444   2334455555543          22334443432    345677744


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-cEEEEECCC
Q 010748          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLS  481 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg-~i~vwd~~~  481 (502)
                      +..+.....+|.+.++..+....+  ..   +... ..++|++.+++.+...++ .|..-++..
T Consensus       159 iy~t~~g~~~Iy~~~l~g~~~~~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          159 FYYNNPKNGQLYRYDTASQSEALF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             EEEECTTTCCEEEEETTTTEEEEE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred             EEEEeCCCceEEEEECCCCCEEEE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence            444544467788888877654333  22   2232 235688887555543332 454445543

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=89.39  E-value=24  Score=37.26  Aligned_cols=150  Identities=11%  Similarity=0.128  Sum_probs=81.6

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccC-------CCCeEEEEEcCCCCcEEEEEeCCCc----E
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRS----V  334 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~s~dg~----i  334 (502)
                      ...|.+|+++|.....++.+...+.|...+ ..|+.-..+..+       ...|.+|++.|..+..++++.....    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            357999999998667788888777776665 334332223221       2469999999866555665543311    3


Q ss_pred             EEEecCCCCCccceEee--------c--CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe---
Q 010748          335 VMKDARISTHSGFKWAV--------A--ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---  401 (502)
Q Consensus       335 ~iwd~~~~~~~~~~~~~--------~--~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---  401 (502)
                      .||-.......-.....        .  ..+..++++|..+..++++...+.|  |-.....        +.-..+.   
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG--------~TW~~~~~~~  162 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRA--------KTWTNVTSIP  162 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTT--------SSCEEETTSC
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCC--------cccCCCccCc
Confidence            33333222111000110        0  1356788888666677777644443  3222221        1111111   


Q ss_pred             ---ccCCCeeEEEEcCCCCCEEEEEeCC
Q 010748          402 ---AHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       402 ---~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                         .....+..+.++|..+..++.+..+
T Consensus       163 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          163 DAFTNGIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             CCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred             cccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence               1124578899988655566666654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.04  E-value=15  Score=33.19  Aligned_cols=185  Identities=16%  Similarity=0.137  Sum_probs=100.1

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      .|..++....  +.++. . ||.|..|-....-.+..-..-...|..++.....   .+.-. +|.|..|-.........
T Consensus        64 ~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h---s~al~-~G~v~~wG~n~~gqlg~  135 (282)
T 3qhy_B           64 GVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA---SYALK-DGKVIAWGDDSDGQTTV  135 (282)
T ss_dssp             CCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE---EEEEE-TTEEEEEECCTTSTTSC
T ss_pred             CEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE---EEEEe-CCeEEEecCCCCCcCCC
Confidence            5677776544  34544 4 8999999765432211111123467777766543   33344 99999998765433222


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      .......|..++.-..   ..++-. +|.|+.|-........     .+    ..-...|..|+....  ..++.  .+|
T Consensus       136 ~~~~~~~i~~i~~G~~---~~~~l~-~G~v~~wG~n~~gqlg-----~p----~~~~~~v~~i~~G~~--hs~al--~~G  198 (282)
T 3qhy_B          136 PAEAQSGVTALDGGVY---TALAVK-NGGVIAWGDNYFGQTT-----VP----AEAQSGVDDVAGGIF--HSLAL--KDG  198 (282)
T ss_dssp             CGGGGSSEEEEEECSS---EEEEEE-TTEEEEEECCTTSTTS-----CC----GGGGSSEEEEEECSS--EEEEE--ETT
T ss_pred             CccCCCCeEEEEcccC---EEEEEE-CCEEEEecCCCCCCCC-----Cc----eecCCCeEEEEecCC--EEEEE--ECC
Confidence            2223455777766442   233334 7999999876542111     01    011345777766542  33333  599


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .|+.|=........+ . ......|..++.....  .++..  +|.|..|=.....
T Consensus       199 ~v~~wG~n~~gqlg~-p-~~~~~~v~~i~~G~~h--~~al~--~g~v~~wG~n~~g  248 (282)
T 3qhy_B          199 KVIAWGDNRYKQTTV-P-TEALSGVSAIASGEWY--SLALK--NGKVIAWGSSRTA  248 (282)
T ss_dssp             EEEEEECCTTSTTCC-C-GGGGSSCCEEEECSSC--EEEEE--TTEEEEESTTCCC
T ss_pred             eEEEEECCCCCCCCC-C-cccCCCceEEEcCCCE--EEEEE--CCEEEEecCCCCc
Confidence            999997654321110 0 0112346666665544  24433  8899999765543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.34  E-value=6  Score=39.44  Aligned_cols=103  Identities=10%  Similarity=-0.025  Sum_probs=67.8

Q ss_pred             cEEEEecCC----CCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC--C-CCCccceEEeccCC
Q 010748          333 SVVMKDARI----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD--S-TSQQSSFTLHAHDK  405 (502)
Q Consensus       333 ~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~--~-~~~~~~~~~~~h~~  405 (502)
                      .+.+.|.+.    ................+..+|+|.++++.|-.+.++.++|+++......  . .....+.....-.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            467777776    3334445567777888999999998777888899999999985311000  0 00111111112234


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      .....+|.+.| +...|.-.|..|.-|++..
T Consensus       379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred             cccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence            56778899987 6666667899999999864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=84.87  E-value=0.31  Score=46.74  Aligned_cols=15  Identities=20%  Similarity=0.333  Sum_probs=7.1

Q ss_pred             HHHHHHHhccccccc
Q 010748           26 EEIEEIINSGALEHE   40 (502)
Q Consensus        26 ~~~~~~~~~~~~~~~   40 (502)
                      +.+.+++.+....++
T Consensus       323 ~~l~~~l~~~~~~~l  337 (386)
T 2ca6_A          323 DEIREVFSTRGRGEL  337 (386)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             HHHHHHhhhcCcchh
Confidence            445555555444443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.59  E-value=31  Score=33.64  Aligned_cols=74  Identities=8%  Similarity=-0.066  Sum_probs=36.8

Q ss_pred             ccceEEeccC-CCeeEEEEcCCC-----CCEEEEEeCCCcEEEEECCCCCee-EEEEe---------cCCCCcEEEEEEc
Q 010748          395 QSSFTLHAHD-KAVCTISYNPLV-----PNLLATGSTDKMVKLWDLSNNQPS-CIASR---------NPKAGAVFSVAFS  458 (502)
Q Consensus       395 ~~~~~~~~h~-~~v~~l~~sp~~-----~~~l~t~s~dg~i~vwd~~~~~~~-~~~~~---------~~~~~~v~~~~~s  458 (502)
                      .++..+..|. ..++.+.|-...     ...++.+...+.|....+...... ....+         ....+.+..+.+.
T Consensus       265 ~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~  344 (463)
T 2wg3_C          265 PSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGED  344 (463)
T ss_dssp             CCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEEC
T ss_pred             CCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEEC
Confidence            4555555442 567888875421     112444555577666665443211 11111         1124679999999


Q ss_pred             CCCCcEEEEEe
Q 010748          459 EDSPFVLAIGG  469 (502)
Q Consensus       459 pd~~~ll~sg~  469 (502)
                      |+|. |+++..
T Consensus       345 pdG~-Lyv~~~  354 (463)
T 2wg3_C          345 ELGE-VYILSS  354 (463)
T ss_dssp             TTCC-EEEEEE
T ss_pred             CCCC-EEEEec
Confidence            9998 455443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=84.53  E-value=28  Score=32.96  Aligned_cols=170  Identities=6%  Similarity=0.093  Sum_probs=95.2

Q ss_pred             cEEEEeCCCC--eeeEeecc------CCCCeEEEEEc---CC---CCcEEEEE-eCCCcEEEEecCCCCCccce------
Q 010748          290 QVKIWDVAAG--KCNLTLEH------HTDKVQAVAWN---HH---SPQILLSG-SFDRSVVMKDARISTHSGFK------  348 (502)
Q Consensus       290 ~v~vwd~~~~--~~~~~~~~------h~~~v~~l~~~---~~---~~~~l~s~-s~dg~i~iwd~~~~~~~~~~------  348 (502)
                      .|.+||+.+.  +.++++.-      ..+.+..+.+.   |.   +..+++.+ +..+.|.++|+.+++.-...      
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5778888888  87777642      13457777777   22   11344444 35678999999876532211      


Q ss_pred             ------------EeecCCeeEEEeCCC----CCCEEEEEeCCC-cEEEEE---CCCCCCCCCCCCCccceEEeccC---C
Q 010748          349 ------------WAVAADVESLAWDPH----AEHSFVVSLEDG-TIKGFD---IRTAKSDPDSTSQQSSFTLHAHD---K  405 (502)
Q Consensus       349 ------------~~~~~~v~~v~~~~~----~~~~~~~~~~dg-~v~i~d---~~~~~~~~~~~~~~~~~~~~~h~---~  405 (502)
                                  +.....+..++++|+    +. .++-+...+ .++-..   ++....      ...+..+ +..   .
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~-~LYf~plss~~ly~V~T~~L~~~~~------~~~v~~~-G~kg~~s  275 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNR-PAYYLAGSAIKVYSVNTKELKQKGG------KLNPELL-GNRGKYN  275 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCC-EEEEEESSCSEEEEEEHHHHSSTTC------CCCCEEE-EECCTTC
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCe-EEEEEECCCCcEEEEEHHHhhCcch------hhceEEe-eecCCCC
Confidence                        111346788888886    44 444444333 344333   222210      1222222 222   3


Q ss_pred             CeeEEEEc-CCCCCEEEEEeCCCcEEEEECCC-C---CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748          406 AVCTISYN-PLVPNLLATGSTDKMVKLWDLSN-N---QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       406 ~v~~l~~s-p~~~~~l~t~s~dg~i~vwd~~~-~---~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~  469 (502)
                      ....+++. .+| .++++--..+.|..|+..+ .   ....+.........+..+.+.+++. |.+..+
T Consensus       276 ~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~-Lwv~sn  342 (381)
T 3q6k_A          276 DAIALAYDPKTK-VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG-LWFMSN  342 (381)
T ss_dssp             CEEEEEECTTTC-EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC-EEEEEC
T ss_pred             CcceEEEeCCCC-eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe-EEEEEC
Confidence            34456675 455 7777777888999999876 1   1112223333556788888888775 455443

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=82.40  E-value=50  Score=34.29  Aligned_cols=185  Identities=14%  Similarity=0.143  Sum_probs=90.7

Q ss_pred             CcEEEEeCCCCe--eeEeeccCCCCe-EEEEEcCCCCc----EEEEEeCC---CcEEEEecCCCCCccceEeecCCeeEE
Q 010748          289 KQVKIWDVAAGK--CNLTLEHHTDKV-QAVAWNHHSPQ----ILLSGSFD---RSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       289 g~v~vwd~~~~~--~~~~~~~h~~~v-~~l~~~~~~~~----~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      ..|+.|.+-+..  -...+.+....+ .+...++++..    .+++.+.+   ..+.+.+...+.............. +
T Consensus       216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~  294 (711)
T 4hvt_A          216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDAT-L  294 (711)
T ss_dssp             CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCE-E
T ss_pred             CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcce-E
Confidence            568899887652  223343323332 23445556532    35544422   4455656553222111111122211 2


Q ss_pred             EeCCCCCCEEEEE----------eCCCcEEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEEEcCCCCCEEEEEeCC
Q 010748          359 AWDPHAEHSFVVS----------LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       359 ~~~~~~~~~~~~~----------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ..+..+ .+++..          ...+.|...++.+.......  ......+..  ....+..+.+..+  .++++...+
T Consensus       295 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~  369 (711)
T 4hvt_A          295 QGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESD--KTSLKILFTPTANEVFNFISTTKD--RVFLATYDN  369 (711)
T ss_dssp             EEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGG--CTTCEEEECCCTTEEEEEEEECSS--CEEEEEEET
T ss_pred             eeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccc--cccceEEECCCCCCeEEEEEEECC--EEEEEEEEC
Confidence            233322 233322          24677888888764100000  011222222  3346778888864  677777777


Q ss_pred             Cc--EEEEECCCCC--eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEEEECC
Q 010748          427 KM--VKLWDLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTL  480 (502)
Q Consensus       427 g~--i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d---g~i~vwd~~  480 (502)
                      +.  |.++++.++.  ...+..+.. .+.+..+.+++++..++++.++.   +.+..+|+.
T Consensus       370 ~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          370 VVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             TEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             CEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            75  6667765553  111122332 35677777778876666655443   567778775

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=81.99  E-value=26  Score=36.93  Aligned_cols=154  Identities=12%  Similarity=0.016  Sum_probs=77.6

Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC--CccceEe----ecCCeeEEEeCCCCCCEEEEEeCCCc----EE
Q 010748          309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--HSGFKWA----VAADVESLAWDPHAEHSFVVSLEDGT----IK  378 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~----~~~~v~~v~~~~~~~~~~~~~~~dg~----v~  378 (502)
                      ...|.+|.++|..+..+++++..+.|...+=....  .+.....    ....+.+++++|..+..++++.....    -.
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            46899999999877788888887776554321110  0000000    12468999999865556666553311    23


Q ss_pred             EEECCCCCCCCCCCCCccceEEec---------cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ec--
Q 010748          379 GFDIRTAKSDPDSTSQQSSFTLHA---------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RN--  446 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~--  446 (502)
                      ||-.....        ..-..+..         ....+..++++|..+..++.+...+.|.. ....++.-.... ..  
T Consensus        94 v~~S~DgG--------~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~  164 (789)
T 1sqj_A           94 FYVSEDRG--------QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDA  164 (789)
T ss_dssp             EEEESSTT--------SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCC
T ss_pred             EEEECCCC--------CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccc
Confidence            33333221        11111110         01135678888865566777664443321 222222111111 11  


Q ss_pred             -CCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748          447 -PKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       447 -~~~~~v~~~~~spd~~~ll~sg~~d  471 (502)
                       .....+..+.++|.....|.++..+
T Consensus       165 ~~~~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          165 FTNGIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             CSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred             cCCCCCeEEEEECCCCCCEEEEEEcC
Confidence             1124578899988543234445443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.07  E-value=46  Score=32.43  Aligned_cols=113  Identities=11%  Similarity=0.134  Sum_probs=61.8

Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe---------ccCCCeeEEEEcCC---CCCEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------AHDKAVCTISYNPL---VPNLL  420 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~sp~---~~~~l  420 (502)
                      .....|+|.|++...++++...|.|++++......      ..++..+.         .....+..|+|+|+   .+.+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~------~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY   87 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF------KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY   87 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC------SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee------eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence            45678999998753466667889999997532210      01111111         12457889999995   21344


Q ss_pred             EEEeC--C----------CcEEEEECCCC--------CeeEEEEec--CCCCcEEEEEEcCCCCcEEEEEeCCC
Q 010748          421 ATGST--D----------KMVKLWDLSNN--------QPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       421 ~t~s~--d----------g~i~vwd~~~~--------~~~~~~~~~--~~~~~v~~~~~spd~~~ll~sg~~dg  472 (502)
                      ++-+.  +          ..|.-|.+...        ....+....  .....-..|.|.|||. |+++.|..+
T Consensus        88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~  160 (463)
T 2wg3_C           88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGM  160 (463)
T ss_dssp             EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTT
T ss_pred             EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCC
Confidence            43332  1          13444655421        112232222  2223467899999997 666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	502
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.5 bits (215), Expect = 2e-19
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 14/162 (8%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
                  +  S + D   K+WDV  G C  T   H   + A+ +  +      +GS D +
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDAT 249

Query: 334 VV--MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391
                  A     +     +   + S+++        +   +D     +D   A      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKADR---- 304

Query: 392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
                +  L  HD  V  +         +ATGS D  +K+W+
Sbjct: 305 -----AGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 3e-13
 Identities = 43/251 (17%), Positives = 72/251 (28%), Gaps = 37/251 (14%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN------ 318
           H   +  + W  + R +L SAS D ++ IWD         +   +  V   A+       
Sbjct: 54  HLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 319 -HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH----------- 366
                  + S    ++           +G    ++                         
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 367 -----------SFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTI 410
                      +  V             +   D      D        T   H+  +  I
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 470
            + P   N  ATGS D   +L+DL  +Q     S +     + SV+FS+    +LA G  
Sbjct: 233 CFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYD 290

Query: 471 KGKLEIWDTLS 481
                +WD L 
Sbjct: 291 DFNCNVWDALK 301

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 19/170 (11%), Positives = 48/170 (28%), Gaps = 19/170 (11%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQP------- 234
           +                    L           G+ + + ++WD+      Q        
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228

Query: 235 ----------HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284
                     +    G D+   +    +  +  + Y   +    +  ++++K    +L +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLA 287

Query: 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
              D    +WD         L  H ++V  +         + +GS+D  +
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 29/213 (13%), Positives = 65/213 (30%), Gaps = 40/213 (18%)

Query: 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 359
           +   TL  H  K+ A+ W   S ++L+S S D  +++ D+  +         ++ V + A
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC----------- 408
           + P   +       D     ++++T + +   + + +  T +                  
Sbjct: 105 YAPSGNY-VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163

Query: 409 ------------------------TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
                                             L  +G+ D   KLWD+      C  +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--CRQT 221

Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
                  + ++ F  +     A G       ++
Sbjct: 222 FTGHESDINAICFFPNGNA-FATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 25/177 (14%), Positives = 44/177 (24%), Gaps = 36/177 (20%)

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
            + S   D   K  D  +       T   +++ I                   SD     
Sbjct: 198 LFVSGACDASAKLWDVREGMCR--QTFTGHESDINAI----CFFPNGNAFATGSDDATCR 251

Query: 181 LYVHHHIIIPAFPLCMAWLD--CPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 238
           L+                +     +   + G  +  G  +    +WD    D      +L
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG---VL 308

Query: 239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295
            G                        H + V  L    +    +A+ S D  +KIW+
Sbjct: 309 AG------------------------HDNRVSCLGVTDD-GMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (205), Expect = 2e-18
 Identities = 56/303 (18%), Positives = 103/303 (33%), Gaps = 47/303 (15%)

Query: 209 GNFMAVGSMEPAIEIWDLD--------------VIDEVQPHVILGGIDEEKKKKKSKKGK 254
            + M   S +  I++WD +              V D    H                   
Sbjct: 29  FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88

Query: 255 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA 314
           +     +     D  +         + + SAS DK +K+W+V  G C  T   H + V+ 
Sbjct: 89  QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 148

Query: 315 VAWNHHSPQILLSGSFDRSVVMKD-------ARISTHSGFKWAVAADVES---------- 357
           V  N     ++ S S D++V +         A +  H      ++   ES          
Sbjct: 149 VRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 358 --LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415
                        +    D TIK +D+ T              TL  HD  V  + ++  
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC---------LMTLVGHDNWVRGVLFHS- 257

Query: 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475
               + + + DK +++WD  N +  C+ + N     V S+ F + +P+ +  G     ++
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKR--CMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVK 314

Query: 476 IWD 478
           +W+
Sbjct: 315 VWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 15/206 (7%)

Query: 259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN 318
           KY    H   V  + ++    +++ SAS D  +K+WD   G    TL+ HTD VQ ++++
Sbjct: 10  KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 319 HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
           H    +    +     +                                 V +  D TIK
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV--SIMPNGDHIVSASRDKTIK 126

Query: 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
            ++++T              T   H + V  +  N     L+A+ S D+ V++W ++  +
Sbjct: 127 MWEVQT---------GYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKE 176

Query: 439 PSCIASRNPKAGAVFSVAFSEDSPFV 464
             C A        V  ++++ +S + 
Sbjct: 177 --CKAELREHRHVVECISWAPESSYS 200

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (148), Expect = 5e-11
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 11/208 (5%)

Query: 174 SDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQ 233
            D       V     +  F     W+     +++ G  +A  S +  + +W +   +   
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECK- 178

Query: 234 PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293
              +       +    + +   SSI    GS T        + +    L S S DK +K+
Sbjct: 179 -AELREHRHVVECISWAPESSYSSISEATGSET------KKSGKPGPFLLSGSRDKTIKM 231

Query: 294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353
           WDV+ G C +TL  H + V+ V ++    + +LS + D+++ + D +         A   
Sbjct: 232 WDVSTGMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEH 290

Query: 354 DVESLAWDPHAEHSFVVSLEDGTIKGFD 381
            V SL +   A +  V    D T+K ++
Sbjct: 291 FVTSLDFHKTAPY-VVTGSVDQTVKVWE 317

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 2e-16
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343
           SAS D+ +K+W+ +  +   TL  H    + +A   +  ++++SGS D ++ + D     
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTLNGHK---RGIACLQYRDRLVVSGSSDNTIRLWDIECGA 209

Query: 344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 403
                  +    E +          V    DG IK +D+  A             TL  H
Sbjct: 210 C---LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 266

Query: 404 DKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
              V  + ++      + + S D  + +WD
Sbjct: 267 SGRVFRLQFD---EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 8e-13
 Identities = 44/255 (17%), Positives = 81/255 (31%), Gaps = 57/255 (22%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 323
             +  V  L ++      + S   D  +KIWD    +C   L  HT  V  + ++     
Sbjct: 13  ETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 324 ILLSGSF-------------------------------------DRSVVMKDARISTHSG 346
              S S                                      DRS+ + D    T   
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129

Query: 347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 406
            +  +     ++      +   V +  D TIK ++  T +            TL+ H + 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE---------FVRTLNGHKRG 180

Query: 407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLA 466
           +  + Y      L+ +GS+D  ++LWD+       +       G    V         + 
Sbjct: 181 IACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLE-----GHEELVRCIRFDNKRIV 232

Query: 467 IGGSKGKLEIWDTLS 481
            G   GK+++WD ++
Sbjct: 233 SGAYDGKIKVWDLVA 247

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAG---------KCNLTLEHHTDKVQAVAWNHHSPQI 324
             +     + S + D ++K+WD+ A           C  TL  H+ +V  + ++      
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQ 279

Query: 325 LLSGSFDRSV 334
           ++S S D ++
Sbjct: 280 IVSSSHDDTI 289

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWD 295
           H+  V  L +++     + S+S D  + IWD
Sbjct: 266 HSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 6e-16
 Identities = 49/212 (23%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
             +     + S + D  VK+WD     C  TL+ HT++V            ++SGS D S
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY---SLQFDGIHVVSGSLDTS 198

Query: 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 393
           + + D              +    +    +     V    D T+K +DI+T         
Sbjct: 199 IRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKT--------- 246

Query: 394 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC---IASRNPKAG 450
            Q   TL   +K    ++      N + T S D  VKLWDL   +              G
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 306

Query: 451 AVFSVAFSEDSPFVLAIGGSKG----KLEIWD 478
            V+ +  S     V A+G   G    KL + D
Sbjct: 307 VVWRIRASNTKL-VCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (186), Expect = 8e-16
 Identities = 52/267 (19%), Positives = 89/267 (33%), Gaps = 62/267 (23%)

Query: 251 KKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT 309
           ++G+  S K  KG H D V+  L +     N + S S D  +K+W    GKC  TL  HT
Sbjct: 2   RRGELKSPKVLKG-HDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 310 DKVQAVAWN-------------------------------------HHSPQILLSGSFDR 332
             V +                                         H   + ++SGS D 
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 333 SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST 392
           ++ + D              A V       +     V    D  +K +D  T        
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAV---RCVQYDGRRVVSGAYDFMVKVWDPET-------- 166

Query: 393 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 452
            +    TL  H   V ++ ++      + +GS D  +++WD+      CI +        
Sbjct: 167 -ETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLT 220

Query: 453 FSVAFSEDSPFVLAIGGSKGKLEIWDT 479
             +   ++   +L  G +   ++IWD 
Sbjct: 221 SGMELKDN---ILVSGNADSTVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 12/162 (7%)

Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
             + S S D  +++WDV  G C  TL  H      +        IL+SG+ D +V + D 
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDI 244

Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
           +                ++      ++  + S +DGT+K +D++T +   +  + +S   
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES--- 301

Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDK----MVKLWDLSNN 437
                  V  I  +     + A GS +      + + D   +
Sbjct: 302 -GGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 36/177 (20%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
           G  +  GS++ +I +WD++  + +                                H   
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLT---------------------------GHQSL 219

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
             G+       NIL S +AD  VKIWD+  G+C  TL+       AV     +   +++ 
Sbjct: 220 TSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276

Query: 329 SFDRSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 380
           S D +V + D +         +         V  +           V   +GT +  
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV-CAVGSRNGTEETK 332

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (180), Expect = 7e-15
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 35/185 (18%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHSPQILL 326
            +      +A+ S D+ V++WD   G     L+        H D V +V +     Q ++
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVV 270

Query: 327 SGSFDRSVVMKDARISTHSGFKWA------------VAADVESLAWDPHAEHSFVVSLED 374
           SGS DRSV + + + + +                      V S+A   + E+  +   +D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKD 329

Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-----NLLATGSTDKMV 429
             +  +D ++               L  H  +V +++           N+ ATGS D   
Sbjct: 330 RGVLFWDKKSGNP---------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

Query: 430 KLWDL 434
           ++W  
Sbjct: 381 RIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.9 bits (164), Expect = 6e-13
 Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 20/204 (9%)

Query: 290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-------RIS 342
            V+IWD+  G+C+LT     D V  VA +    + + +GS DR+V + D+       R+ 
Sbjct: 186 TVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244

Query: 343 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS---DPDSTSQQSSFT 399
           + +         V S+ +    +   V    D ++K ++++ A +        S     T
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
              H   V +++        + +GS D+ V  WD  +     +        +V SVA + 
Sbjct: 304 YIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGN--PLLMLQGHRNSVISVAVAN 360

Query: 460 DSPF-----VLAIGGSKGKLEIWD 478
            S       V A G    K  IW 
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 41/285 (14%), Positives = 83/285 (29%), Gaps = 74/285 (25%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH----------------- 307
           HT  V  + ++ +    LA+   +K  +++ V+ G     L                   
Sbjct: 61  HTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 308 -HTDKVQAVAWNHHSPQILLSG-------------------------------------- 328
                +++V ++     +                                          
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 329 --SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
                   V      +       ++   V ++A  P           D  ++ +D  T  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------- 439
                 S+  S T   H  +V ++ +       + +GS D+ VKLW+L N          
Sbjct: 239 LVERLDSENESGT--GHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 440 ---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
              +C  +       V SVA +++  ++L+ G     +  WD  S
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILS-GSKDRGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 21/131 (16%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
           G  +  GS++ ++++W+L                    K  SK     + +     H D 
Sbjct: 266 GQSVVSGSLDRSVKLWNLQ---------------NANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-----HHSPQ 323
           VL +A  +     + S S D+ V  WD  +G   L L+ H + V +VA            
Sbjct: 311 VLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369

Query: 324 ILLSGSFDRSV 334
           +  +GS D   
Sbjct: 370 VFATGSGDCKA 380

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 32/93 (34%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
             ++  GS +  +  WD                 +        +G           H +S
Sbjct: 320 DEYILSGSKDRGVLFWDK----------------KSGNPLLMLQG-----------HRNS 352

Query: 269 VLGLAWNKEFR-----NILASASADKQVKIWDV 296
           V+ +A           N+ A+ S D + +IW  
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.4 bits (165), Expect = 4e-13
 Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 18/191 (9%)

Query: 265 HTDSVLG-LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 323
           H  SV+  L +     N + + + DK ++++D    K  L L  H   V A+ + H    
Sbjct: 11  HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-- 65

Query: 324 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF-VVSLEDGTIKGFDI 382
           IL+SGS DR+V + D +    +       + V  L    +    + V    D T+  + +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 383 RTAKSDPDS-----------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431
               S PD            T +++ + +      + ++       N++ +GS D  + +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 432 WDLSNNQPSCI 442
           WD++  +   I
Sbjct: 186 WDVAQMKCLYI 196

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQ 323
           H  ++  +       NIL S S + Q  I+++ +GK  +  +    D++ +V +   +  
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-- 336

Query: 324 ILLSGSFDRSVVMKD 338
           ++ +   D    ++ 
Sbjct: 337 LVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 45/297 (15%), Positives = 88/297 (29%), Gaps = 26/297 (8%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
                                + + +   ++  GS +  + +W L     V  H    G 
Sbjct: 81  IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH----GE 136

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 301
           + +         +          H  SV          NI+ S S D  + +WDVA  KC
Sbjct: 137 EHDYPLVFHTPEENPYFVGVLRGHMASV---RTVSGHGNIVVSGSYDNTLIVWDVAQMKC 193

Query: 302 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 361
              L  HTD++ +  ++H   +              D  I         +   ++     
Sbjct: 194 LYILSGHTDRIYSTIYDHERKRC--------ISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 421
                     L              S     +   S     H   +  I+   +  N+L 
Sbjct: 246 VGLLRLSDKFLVSA-------AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298

Query: 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           +GS +    +++L + +    A+    A  ++SV F   +  ++A     G+  +  
Sbjct: 299 SGS-ENQFNIYNLRSGKL-VHANILKDADQIWSVNFKGKT--LVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 16/162 (9%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
                R    SAS D  ++IWD+  G+   TL+ HT  V  +  +               
Sbjct: 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS-----AAAD 262

Query: 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 393
             ++    + +S        ++ ++     +++  +VS  +     +++R+ K       
Sbjct: 263 GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGK------- 314

Query: 394 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
                 +      + ++++      L+A    D    L  L 
Sbjct: 315 -LVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 26/305 (8%), Positives = 72/305 (23%), Gaps = 19/305 (6%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQ---------------PHVILGGIDEEKKKKKSKKG 253
            N++  G+ +  I ++D      +                   IL     ++  +     
Sbjct: 23  DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 82

Query: 254 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ 313
           K       +G ++          +    + + S D  + +W +             D   
Sbjct: 83  KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 142

Query: 314 AVAWNHHSPQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVV 370
                  +P  +       + V   +    I     +   +     +     +       
Sbjct: 143 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 202

Query: 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430
            +          R   +  D+T +            +   +    +  L           
Sbjct: 203 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 262

Query: 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490
                 +        +     + ++     S  +L   GS+ +  I++  S   +     
Sbjct: 263 GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV-SGSENQFNIYNLRSGKLVHANIL 321

Query: 491 KYSKP 495
           K +  
Sbjct: 322 KDADQ 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 7e-12
 Identities = 25/218 (11%), Positives = 64/218 (29%), Gaps = 9/218 (4%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAWNHHS 321
             D +  +      +++L   S D  + ++       N+ L     +   +    +  ++
Sbjct: 10  PKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 322 PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381
              +  G+    ++  D   S          A++       + +   + +  DG I+  D
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-S 440
            R       +    +      + K    I       + L  G  +  V+ + L   +  +
Sbjct: 129 PRNYGDGVIAVKNLN----SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
                +     +  VA         A     G++ +  
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 30/289 (10%), Positives = 77/289 (26%), Gaps = 49/289 (16%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
            + + + S + ++ ++  D                           K+    +   +   
Sbjct: 23  KSLLLITSWDGSLTVYKFD------------------------IQAKNVDLLQSLRYKHP 58

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
           +L   +       +   +   ++   D+        L ++   +       +    L++ 
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 329 SFDRSVVMKDAR-----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
           S+D  + + D R     +                +          +V + +  ++ F + 
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 384 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
             +          +         +  ++  P      A  S D  V +    +      +
Sbjct: 179 LCE------DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232

Query: 444 SRNPK-------------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
           S+                A  V S+ FS    F L   GS G +  W+ 
Sbjct: 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNL 280

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 15/149 (10%)

Query: 195 CMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGK 254
               +       ++    A  S++  + +   D   +                 K    +
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY------------NSSKRFAFR 239

Query: 255 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA 314
              +  K  +    V  + ++      L +A +D  +  W++   K         ++   
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSV 297

Query: 315 VAWNHHSPQILLSGSFDRSVVMKDARIST 343
           V     S  IL   + D +     A   T
Sbjct: 298 VKI-ACSDNILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 254 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ 313
            +  IK     + DSV+ +A +    NIL  A++D   K         + T+E +   + 
Sbjct: 282 TRKKIKNFAKFNEDSVVKIACS---DNILCLATSDDTFKTN----AAIDQTIELNASSIY 334

Query: 314 AVAWNHHSP 322
            + +++ +P
Sbjct: 335 II-FDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 7/69 (10%), Positives = 19/69 (27%), Gaps = 4/69 (5%)

Query: 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAW 360
             +   D +  +        +LL  S+D S+ +    I   +            +    +
Sbjct: 6   IEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 361 DPHAEHSFV 369
             + +    
Sbjct: 65  IDNTDLQIY 73

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 11/180 (6%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSP 322
             + +   AWNK+ R  +A    + +V I++ +  K      L+ H  +V  V W   S 
Sbjct: 6   LVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS- 63

Query: 323 QILLSGSFDRSV-VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381
             +++   DR+  V      +                      E  F V      I    
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441
                             +    ++            LLA GS D   +++     +   
Sbjct: 124 FEQEN------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 460
               + +   ++N      +A    +  V +++ S N+   +       G V  V ++ D
Sbjct: 4   SFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 461 SPFVLAIGGSKGKLEIWD 478
           S   +   G+     +W 
Sbjct: 63  SNR-IVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 43/307 (14%), Positives = 85/307 (27%), Gaps = 46/307 (14%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
              +A+      + I++                           G K    ++   H   
Sbjct: 19  RTQIAICPNNHEVHIYEKS-------------------------GNKWVQVHELKEHNGQ 53

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL-- 326
           V G+ W  +  N + +   D+   +W +       TL        A        +     
Sbjct: 54  VTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV 112

Query: 327 ---SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
              S         ++         K  + + V SL W P++      S  D   + F   
Sbjct: 113 GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CDFKCRIFSAY 171

Query: 384 TAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
             + +               +  F   +    V  + ++    + +A  S D  V L D 
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADA 230

Query: 435 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494
                  +A+   +   + +V F  +S  V    G      ++   S AG  +   +   
Sbjct: 231 DKKM--AVATLASETLPLLAVTFITESSLV--AAGHDCFPVLFTYDSAAGKLSFGGRLDV 286

Query: 495 PKKPQSV 501
           PK+    
Sbjct: 287 PKQSSQR 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 21/180 (11%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 323
           S    V G+ ++    + +A  S D  V + D        TL   T  + AV +   S  
Sbjct: 199 SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES-S 256

Query: 324 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW--DPHAEHSFVVSLEDGTIKGFD 381
           ++ +G     V+           F +  AA   S     D   + S          +  D
Sbjct: 257 LVAAGHDCFPVL-----------FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP---LVPNLLATGSTDKMVKLWDLSNNQ 438
            + +     +           H  +V  IS         +   T   D  + +WD+ + +
Sbjct: 306 KKASSEGSAAAGAG---LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-----QILLSGSFDRSV 334
           +++A+   D    ++   +    L+     D  +  +    +       +    S + S 
Sbjct: 256 SLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314

Query: 335 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS 387
                  S H      ++     L+        F  +  DG +  +D+R+ +S
Sbjct: 315 AAGAGLDSLHKNSVSQISV----LSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 41/333 (12%), Positives = 94/333 (28%), Gaps = 48/333 (14%)

Query: 168 VYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD 227
           V+  +  D  +P    + H +  +    +  L    +D  +   +A  S    +  + + 
Sbjct: 38  VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97

Query: 228 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287
                         ++E KK   +K        KK S      G + ++   + L +   
Sbjct: 98  R-------------EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144

Query: 288 DKQVKIWDVAAGKCN------------------LTLEHHTDKVQAVAWNHHSPQILLSGS 329
                IW                           +    +    +V  +     ++ +G 
Sbjct: 145 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF 202

Query: 330 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDI-- 382
            + +V + +           +  + + +       + S   SL     +  +     +  
Sbjct: 203 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 262

Query: 383 -----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437
                R       + S Q+S    AH   V ++S+N      L +   D  ++ WD+   
Sbjct: 263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTK 321

Query: 438 QPSCI--ASRNPKAGAVFSVAFSEDSPFVLAIG 468
           +         +        +A  E    +   G
Sbjct: 322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 32/240 (13%), Positives = 67/240 (27%), Gaps = 51/240 (21%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
            +F    S +  +++WD  ++D   P                 K     +      H D 
Sbjct: 24  NSFTVSCSGDGYLKVWDNKLLDNENPKD---------------KSYSHFVHKSGLHHVDV 68

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
           +  +  +     ++A+ S    +  + +        +      +       HS       
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS------- 121

Query: 329 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 388
                               WA+       + D    H  V +   GT   +       +
Sbjct: 122 -------------------FWALKW---GASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159

Query: 389 PDSTSQQSSFTLHAHDKAVCTISYNPLV-------PNLLATGSTDKMVKLWDLSNNQPSC 441
            +S +   S TL         ++ +            L+ATG  +  V++ +LS  +P  
Sbjct: 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY 219

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 9e-08
 Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 40/232 (17%)

Query: 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-------------RISTHSGFKWA 350
             + H   + +V+         +S S D  + + D                  H      
Sbjct: 9   AGKAHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT---AKSDPDSTSQQSSFTLHAHDKAV 407
           V   ++++  D         +   G +  + I      K             +  H    
Sbjct: 66  VDV-LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 408 CTISY--NPLVPNLLATGSTDKMVKLWDLSNNQ----------------PSCIASRNPKA 449
                  + L+ + L          +W                         + S    +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSV 501
               SV  SE    ++A G + G ++I +  +   + N  S++S      S+
Sbjct: 185 QFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 10/189 (5%)

Query: 185 HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE 244
             + I          +   +     N  ++ S++ + +   L +  +      +   + E
Sbjct: 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264

Query: 245 KKK---KKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 301
             +     S     S     + +H+  V+ L++N      L SA  D +++ WDV   + 
Sbjct: 265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKER 323

Query: 302 NLTLEHHTDKVQ----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADV 355
             TL  H D ++     +A + H   +   G FD   + K  R    +            
Sbjct: 324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 383

Query: 356 ESLAWDPHA 364
            S+ W   A
Sbjct: 384 RSIRWFREA 392

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.7 bits (137), Expect = 8e-10
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 3/109 (2%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQ 323
           H  ++  L+ + +    L SA A+  +  WD++ G  N    + H   +  +        
Sbjct: 11  HNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 324 ILLSGSFD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 371
             +S     + V    + + +       +++    LA     + +    
Sbjct: 70  FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 3e-06
 Identities = 33/276 (11%), Positives = 72/276 (26%), Gaps = 9/276 (3%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG----IDEEKKKKKSKKGKKSSIKYKKGS 264
           G  +     E  I  WD+     +   V        I   K   K      S   + K  
Sbjct: 24  GKTLFSADAEGHINSWDIS--TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 81

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
                   +       + +           D+A   C   +  ++          ++   
Sbjct: 82  PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSC 141

Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
           +   +  + V +       H       +         P    S   S     +   D   
Sbjct: 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 201

Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL--LATGSTDKMVKLWDLSNNQPSCI 442
                   +       ++       ++     P+   LATGS D  V +W+++      I
Sbjct: 202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 261

Query: 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
             +   A +  +     +   +++  G    ++ W+
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVS-AGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
             + H+KA+  +S +      L +   +  +  WD+S    + +         +  +  
Sbjct: 7   VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHA-TMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 9/119 (7%), Positives = 24/119 (20%), Gaps = 8/119 (6%)

Query: 317 WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 376
            N+ +  +    S                   W       +                D +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
           +  +++                   AH  +             + +   D  +K W++ 
Sbjct: 248 VIVWNMNKPS-------DHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 17/120 (14%), Positives = 26/120 (21%), Gaps = 2/120 (1%)

Query: 177 GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHV 236
            +       +          +    P             S                   +
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 237 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296
             G +D         K     I  K      SV  + W  E    + SA  D  +K W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.002
 Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
           G  +     H   + A++      + L S   +  +   D  
Sbjct: 2   GSIDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDIS 42

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 55.3 bits (131), Expect = 6e-09
 Identities = 17/214 (7%), Positives = 55/214 (25%), Gaps = 20/214 (9%)

Query: 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR 332
           A+    ++        + + ++D+   K       ++             + L   S+  
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP--AFDADSKNLYYLSYRS 200

Query: 333 SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK-------GFDIRTA 385
                D  +   S    +       +   P + +   +     T +           R++
Sbjct: 201 LDPSPDRVVLNFSFEVVS---KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 257

Query: 386 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 445
             + D    +    L +         +               ++  +D+   + + +   
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFA-AYYQGAPEKGVLLKYDVKTRKVTEVK-- 314

Query: 446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
                 +  +  S D    + +    GK+  +  
Sbjct: 315 ----NNLTDLRLSADRKT-VMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 12/175 (6%), Positives = 38/175 (21%), Gaps = 26/175 (14%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
                   L   S        D      +  +      +  +  + +  +++       +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHS------------FVVSLEDGTIKGFD 381
                  +   S        D   +     +               +  + E G +  +D
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436
           ++T K             +      +  +  +      +     D  +  + L  
Sbjct: 305 VKTRK-------------VTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEK 345

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
             +ASASADK +KIW+VA  K   T+   T           + Q L+S S +  +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 418 NLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 476
             +A+ S DK +K+W+++  +    I            + +++ +   L    + G +  
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA---LVSISANGFINF 307

Query: 477 WD 478
            +
Sbjct: 308 VN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 2/89 (2%)

Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           + +   +    V    V +         H+ +         S     SG    +V + D 
Sbjct: 30  DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDT 87

Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSF 368
             +TH                   +E   
Sbjct: 88  TQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419
                      +  D TIK +++ T K       +++       +     I +       
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKV------EKTIPVGTRIEDQQLGIIWTK---QA 295

Query: 420 LATGSTDKMVKLWDL 434
           L + S +  +   + 
Sbjct: 296 LVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 27/114 (23%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
                       +  +     L     G  +A  S +  I+IW++  +       I  G 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE--KTIPVG- 279

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295
                                    D  LG+ W K     L S SA+  +   +
Sbjct: 280 ---------------------TRIEDQQLGIIWTK---QALVSISANGFINFVN 309

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 24/279 (8%), Positives = 70/279 (25%), Gaps = 49/279 (17%)

Query: 249 KSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKCNLTLEH 307
                K   +    G  +  V  + ++       L S     +V +W     K + ++E 
Sbjct: 46  DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 105

Query: 308 --------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 359
                       +  ++W+    ++ + G    +  +  +  S +S  + +  +   +  
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165

Query: 360 WDPHAEHSFVVSLEDGTIKGFDI------------RTAKSDPDSTSQQSSFTLHAHDKAV 407
               +     +++ D     F                 +       + S  +        
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225

Query: 408 CTISYNPLVP----------------------------NLLATGSTDKMVKLWDLSNNQP 439
                +                                   AT   D  +++WD++ ++ 
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285

Query: 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
               + + +      V         +      G L  ++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 7e-07
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 9/129 (6%)

Query: 308 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367
               V+ V ++  S + +++   DR +   D +      +       V+   +      S
Sbjct: 204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 263

Query: 368 --FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425
             F     D TI+ +D+ T+K           +TL         +         + + S 
Sbjct: 264 QKFATVGADATIRVWDVTTSK-------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 426 DKMVKLWDL 434
           D  +  ++L
Sbjct: 317 DGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 18/126 (14%)

Query: 256 SSIKYKK------GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--- 306
           SSI  K+       +  +    L+++     I         V+  D    K    ++   
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60

Query: 307 HHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVES 357
           H +  V  V ++     Q L SG     V++        S             +A  +  
Sbjct: 61  HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120

Query: 358 LAWDPH 363
           ++WD  
Sbjct: 121 ISWDFE 126

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412
                L++DP          +   ++  D   +K  P        FT H     V T+ +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ-----FTGH-GSSVVTTVKF 71

Query: 413 NPLVP-NLLATGSTDKMVKLWDLSNNQPSCIASRNPKA------GAVFSVAFSEDSPF 463
           +P+     L +G     V +W  + ++ S     N K+      G +  +++  +   
Sbjct: 72  SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 11/115 (9%), Positives = 23/115 (20%), Gaps = 25/115 (21%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
                +                         A    +  I +WD+     VQ        
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ-------- 287

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296
                               K    +  +G+         + S S D  +  +++
Sbjct: 288 ---------------KWTLDKQQLGNQQVGVVATGN--GRIISLSLDGTLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   VL L +         S   D  +  W    G      +     V +   +    + 
Sbjct: 264 HESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDD-KY 320

Query: 325 LLSGSFDRSV 334
           +++GS D+  
Sbjct: 321 IVTGSGDKKA 330

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 460
           H H+  V ++ +         +   D ++  W          +  +    +V S   S D
Sbjct: 262 HLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVD 317

Query: 461 SPFVLAIGGSKGKLEIWDTL 480
             + +  G    K  +++ +
Sbjct: 318 DKY-IVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWN 318
           +H + V  +  +   R  + +      VK+WD++          L   +  + +++    
Sbjct: 49  NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 319 HHSPQILLSGSFDRSVVMKDARISTHSGFKW 349
                +++ G      +   A  +     + 
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN---QPSCIASRNPKAGAVFSVAFSE 459
           H + VC ++ +      + TG     VK+WD+S+     P        +   + S     
Sbjct: 50  HGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 460 DSPFVLAIGGSKGKLEIW 477
           D    L +GG    L IW
Sbjct: 108 DGCT-LIVGGEASTLSIW 124

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 12/115 (10%), Positives = 27/115 (23%), Gaps = 29/115 (25%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
            +H +                LK    G +      +  +  W                 
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT--------------- 294

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296
                               +   + SVL    + +    + + S DK+  +++V
Sbjct: 295 -------------PYGASIFQSKESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 5/269 (1%)

Query: 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 271
           +  GS +  I  W    + +   ++I+   + + ++  S     +        H      
Sbjct: 24  LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQP 83

Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
              +       A  + D  + I     G    ++  ++         ++    L  G+  
Sbjct: 84  KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 143

Query: 332 RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391
           +   + D  +S     K  + A    ++  P   +     +    +              
Sbjct: 144 QVFKLSDLEVSFD--LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW 201

Query: 392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451
             + S     +   A    +   +  +L+ATGS D  + ++ +       I + N     
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDG 260

Query: 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           V ++ +   S   L   G+   ++ W+ +
Sbjct: 261 VNNLLWETPS--TLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS 321
           H   +  L  N      L S S D ++  W  ++       + H++ + ++  +   
Sbjct: 12  HNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458
           T+  H+K +  ++ NPL      +GS D  +  W  S+            +  + S+  S
Sbjct: 8   TISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSSMHQD-------HSNLIVSLDNS 55

Query: 459 EDSPFV 464
           +   + 
Sbjct: 56  KAQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 28/115 (24%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
                                 ++  + + +A GS++  I I+ +               
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK-------------- 245

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296
                       +   I     +H D V  L W     + L S+ AD  +K W+V
Sbjct: 246 ------------RPMKIIKALNAHKDGVNNLLWETP--STLVSSGADACIKRWNV 286

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 14/174 (8%), Positives = 36/174 (20%), Gaps = 13/174 (7%)

Query: 271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGS 329
           G A        +   +    + + DVA+     +                 +    +  +
Sbjct: 1   GPALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59

Query: 330 FDRSVVMKDA------RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
               +   D         +  S     V   + S A  P  +  +        +    + 
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 384 TAKS----DPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
                         +          + V  +       +L   G     + +  
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQV-YLMRAADDGSLYVAGPDIYKMDVKT 172

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 24/252 (9%), Positives = 57/252 (22%), Gaps = 33/252 (13%)

Query: 258 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH------HTDK 311
            K                 + R      +    +   D+   K                 
Sbjct: 31  YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 90

Query: 312 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVV 370
           + + A +    ++  + +  + +             F  A   + + +   P     +++
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 371 SL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--------------------- 408
              +DG++        K D  +     +  L   ++                        
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 409 -TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI 467
            TI+         AT          DL   +       +      F+   S   P  +  
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYG 269

Query: 468 GGSKGKLEIWDT 479
                +L  +D 
Sbjct: 270 VL--NRLAKYDL 279

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 9e-04
 Identities = 12/113 (10%), Positives = 30/113 (26%), Gaps = 3/113 (2%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
             K+ +   A+A         D+  GK +        ++             + G  +R 
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRL 274

Query: 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
                 +          +      +A+D   +    +      +  F+  T +
Sbjct: 275 AKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLE 324

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 13/162 (8%), Positives = 38/162 (23%), Gaps = 9/162 (5%)

Query: 279 RNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 336
           R+ + + +   ++ + D         +T+                     + +   S+V 
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 337 KDAR-----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG-FDIRTAKSDPD 390
            D                     +   A  P  +   +           F+++  +    
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432
                S        + +  +++     + L     D  V   
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDP 161

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 4/62 (6%), Positives = 12/62 (19%)

Query: 418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
           + +   +    + + D        + +             +       A       L   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 478 DT 479
           D 
Sbjct: 62  DL 63

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 4/53 (7%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW 317
              S   +  + +  + +    A   +  +D    +    ++   +   ++A 
Sbjct: 278 LPHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
             S    + + D+++N+   + +  P          S D   V         + I DT
Sbjct: 7   ANSESDNISVIDVTSNK---VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 7/43 (16%), Positives = 14/43 (32%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE 306
                  G+A   + + +  + S    V + D A      T+ 
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           + S    + + DV + K   T+            +    ++ ++ +    V + D 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 9/83 (10%), Positives = 28/83 (33%)

Query: 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           +       + + +W+L++     +       G V  +  S D  ++      + ++  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 479 TLSDAGISNRFSKYSKPKKPQSV 501
              D G     ++ + P     +
Sbjct: 66  IAPDDGALTFAAESALPGSLTHI 88

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 19/139 (13%)

Query: 349 WAVAADVESL----AWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 403
           W V    E        D   E+ F V+L + G I   D  T +        ++       
Sbjct: 11  WKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYE-------IKTVLDTG-- 61

Query: 404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAFSED 460
             AV     +      L     D  V + DL   +P+    I   +       S     +
Sbjct: 62  -YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 461 SPFVLAIGGSKGKLEIWDT 479
             + +A      +  I D 
Sbjct: 120 DKYAIAGAYWPPQYVIMDG 138

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 22/219 (10%), Positives = 48/219 (21%), Gaps = 59/219 (26%)

Query: 271 GLAWNKEFRNILA-SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 329
               + +  N+ + +     Q+ + D +  +                             
Sbjct: 23  QQMNDWDLENLFSVTLRDAGQIALIDGSTYEIK--------------------------- 55

Query: 330 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 389
                      + T           V          + FV+   DG +   D+   +   
Sbjct: 56  ---------TVLDTGYA--------VHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTT 97

Query: 390 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 449
            +  +  S           +          +A         + D    +P  I S     
Sbjct: 98  VAEIKIGS----EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

Query: 450 ---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
                      V ++  S   P  +      GK+ + D 
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	502
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.68
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.43
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.36
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.23
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.21
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.15
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.14
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.09
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.05
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.98
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.95
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.94
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.87
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.84
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.77
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.69
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.68
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.51
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.43
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.39
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.32
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.24
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.89
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.83
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.47
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.43
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.29
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.18
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.15
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.06
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.85
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.41
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.4
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.3
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.26
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.72
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.58
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.21
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.0
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.98
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.82
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.73
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.56
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.92
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.94
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.76
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.66
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.48
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	90.83
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	87.59
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	85.41
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.06

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-38  Score=304.01  Aligned_cols=287  Identities=17%  Similarity=0.312  Sum_probs=237.1

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++|++|+ ++   .++||.+........ +.............|++|       +|++++|++|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg---~V~iWd~~~~~~~~~-~~~~~~~~h~~~I~~v~~-------s~dg~~l~s~~  116 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KG---CVKVWDISHPGNKSP-VSQLDCLNRDNYIRSCKL-------LPDGCTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BS---EEEEEETTSTTCCSC-SEEEECSCTTSBEEEEEE-------CTTSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CC---EEEEEEccCCcccce-eEEeeecCCCCcEEEEEE-------cCCCCEEEEee
Confidence            5889999999999999999986 54   577777665443211 111111111223467777       79999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .||.|++||+....                         ......+..|...|.+++|+|+ +.++++++.++.|++|++
T Consensus       117 ~dg~i~iwd~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_         117 EASTLSIWDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             SSSEEEEEECCCC---------------------------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred             cccccccccccccc-------------------------cccccccccccccccccccccc-cccccccccccccccccc
Confidence            99999999986422                         1222344578899999999999 569999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      .++++......|...|.+++|++++ ..+++++.|+.|++||+++.+... ...+...|.+++|+|++. ++++++.+|.
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~~-~~~~~~~i~~l~~~~~~~-~l~~~~~d~~  247 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPTGE-WLAVGMESSN  247 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccccccccccccccccccccccccc-cccccccccccccccccccceeec-ccccccceEEEEEccccc-ccceeccccc
Confidence            9999999999999999999999999 899999999999999999877554 567889999999999765 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      |++||+++.          .......|...|++++|+|++ .+|++++.||.|++||+.+++.  +... .|.+.|++++
T Consensus       248 i~i~d~~~~----------~~~~~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~  313 (337)
T d1gxra_         248 VEVLHVNKP----------DKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS--IFQS-KESSSVLSCD  313 (337)
T ss_dssp             EEEEETTSS----------CEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE--EEEE-ECSSCEEEEE
T ss_pred             ccccccccc----------ccccccccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCE--EEEc-cCCCCEEEEE
Confidence            999999875          345677899999999999998 8999999999999999999884  3333 3678999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEC
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      |+|++++ |++|+.||+|+|||+
T Consensus       314 ~s~d~~~-l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         314 ISVDDKY-IVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSCE-EEEEETTSCEEEEEE
T ss_pred             EeCCCCE-EEEEeCCCeEEEEEE
Confidence            9999994 899999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.9e-37  Score=292.15  Aligned_cols=290  Identities=17%  Similarity=0.256  Sum_probs=225.4

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d  218 (502)
                      ......++++|+|+.|+.+...      .|++|+........++..|..    ...|++|       +|+|++||+|+.|
T Consensus        17 r~~~~~~a~~~~g~~l~~~~~~------~v~i~~~~~~~~~~~~~~H~~----~v~~~~~-------sp~g~~latg~~d   79 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCNGT------SVYTVPVGSLTDTEIYTEHSH----QTTVAKT-------SPSGYYCASGDVH   79 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEETT------EEEEEETTCSSCCEEECCCSS----CEEEEEE-------CTTSSEEEEEETT
T ss_pred             CCCeEEEEEcCCCCEEEEEeCC------EEEEEECCCCceeEEEcCCCC----CEEEEEE-------eCCCCeEeccccC
Confidence            3456788999999999988533      455555544433344444433    3378888       7999999999999


Q ss_pred             CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec--CCcEEEEeC
Q 010748          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWDV  296 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--dg~v~vwd~  296 (502)
                      |.|+||++......                         ....+..|..+|.+++|+|+ +.+|++++.  +..++||++
T Consensus        80 g~i~iwd~~~~~~~-------------------------~~~~~~~~~~~v~~v~~s~d-~~~l~~~~~~~~~~~~v~~~  133 (311)
T d1nr0a1          80 GNVRIWDTTQTTHI-------------------------LKTTIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFLF  133 (311)
T ss_dssp             SEEEEEESSSTTCC-------------------------EEEEEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEET
T ss_pred             ceEeeeeeeccccc-------------------------cccccccccCcccccccccc-cccccccccccccccccccc
Confidence            99999999754322                         12234579999999999999 557888875  456999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                      .+++...++.+|...|++++|+|++..+|++|+.|+.|++||+++.+.......+...|.++.|+|++. ++++++.||.
T Consensus       134 ~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~  212 (311)
T d1nr0a1         134 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGT  212 (311)
T ss_dssp             TTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccc-cccccccccc
Confidence            999999999999999999999999966789999999999999998877766667889999999999865 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC---CcEE
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA---GAVF  453 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~v~  453 (502)
                      |++||+++.......  ........+|...|++++|+|++ .+|++|+.||.|+|||+++++  ++..+..|.   ..+.
T Consensus       213 v~~~d~~~~~~~~~~--~~~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~--~~~~l~~~~~~~~~~~  287 (311)
T d1nr0a1         213 IVLYNGVDGTKTGVF--EDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLK--VEKTIPVGTRIEDQQL  287 (311)
T ss_dssp             EEEEETTTCCEEEEC--BCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEECCSSGGGCEE
T ss_pred             ccccccccccccccc--cccccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCCCc--EEEEEECCCCccceEE
Confidence            999999876211000  01112234688999999999998 899999999999999999887  444554443   3455


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          454 SVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       454 ~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      ++.|++  .+ |++++.||.|++||..
T Consensus       288 ~~~~~~--~~-l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         288 GIIWTK--QA-LVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEECS--SC-EEEEETTCCEEEEETT
T ss_pred             EEEecC--CE-EEEEECCCEEEEEeCC
Confidence            666654  43 7888999999999973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-36  Score=283.95  Aligned_cols=284  Identities=22%  Similarity=0.379  Sum_probs=242.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++|++|+.++   .++||.+.....  ...+..|.    ....++.|       +|++.++++++
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg---~i~iWd~~~~~~--~~~~~~h~----~~V~~~~~-------~~~~~~~~~~~   78 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDA---TIKVWDYETGDF--ERTLKGHT----DSVQDISF-------DHSGKLLASCS   78 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSS---CEEEEETTTCCC--CEEECCCS----SCEEEEEE-------CTTSSEEEEEE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCE--EEEEeCCC----CcEEEEee-------ecccccccccc
Confidence            5899999999999999999999886   567776654432  11222232    22356666       78999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .++.+.+|+.....                           ....+.+|...+.++.|+|+ +..+++++.|+.+++||+
T Consensus        79 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~  130 (317)
T d1vyhc1          79 ADMTIKLWDFQGFE---------------------------CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEV  130 (317)
T ss_dssp             TTSCCCEEETTSSC---------------------------EEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred             cccccccccccccc---------------------------cccccccccccceeeeccCC-CceEEeeccCcceeEeec
Confidence            99999999986422                           22334578999999999999 568999999999999999


Q ss_pred             CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC-----------
Q 010748          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE-----------  365 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-----------  365 (502)
                      .+++.+..+.+|...+.+++|+|++ .+|++++.|+.|++|++++.........+...+.++.|+|...           
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  209 (317)
T d1vyhc1         131 QTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE  209 (317)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             ccceeeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccce
Confidence            9999999999999999999999998 8999999999999999999887766667788899999887542           


Q ss_pred             --------CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          366 --------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       366 --------~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                              .++++++.||.|++|+++++         .++..+.+|...|++++|+|++ .+|++|+.||.|++||+.++
T Consensus       210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         210 TKKSGKPGPFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTS
T ss_pred             eeeeccCCceeEeccCCCEEEEEECCCC---------cEEEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCC
Confidence                    36889999999999999986         7888999999999999999998 89999999999999999988


Q ss_pred             CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      +  ++..+.+|.++|++++|+|++++ |++|+.||+|+|||
T Consensus       280 ~--~~~~~~~h~~~V~~~~~s~~~~~-l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         280 R--CMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWE  317 (317)
T ss_dssp             C--CCEEEECCSSCEEEEEECSSSSC-EEEEETTSEEEEEC
T ss_pred             c--EEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEeC
Confidence            7  46677889999999999999995 88999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=291.03  Aligned_cols=298  Identities=21%  Similarity=0.329  Sum_probs=225.9

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeee-------------eccccCCCcceeeeecCCC
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH-------------HHIIIPAFPLCMAWLDCPL  203 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~~~~  203 (502)
                      +|.+.|.+++|+|+|++||+|+ ++   .++||....... ...+..+             ..........|++|     
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~---~i~iW~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-----  129 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NK---TTQVYRVSDGSL-VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-----  129 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BS---CEEEEETTTCCE-EEEECC-----------------CCCCBEEEEEE-----
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CC---eEEEEEecccce-EeeecccccccccccccccccccCCCCCEEEEEE-----
Confidence            5889999999999999999986 54   567776543321 0000000             00001112345666     


Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                        +|++++|++|+.||.|++|+.....                           ......+|...|.+++|+++ +..++
T Consensus       130 --s~~~~~l~s~~~dg~v~i~~~~~~~---------------------------~~~~~~~h~~~v~~~~~~~~-~~~~~  179 (388)
T d1erja_         130 --SPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHEQDIYSLDYFPS-GDKLV  179 (388)
T ss_dssp             --CTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCSSCEEEEEECTT-SSEEE
T ss_pred             --CCCCCcceecccccccccccccccc---------------------------cccccccccccccccccccc-ccccc
Confidence              8999999999999999999987532                           22344579999999999998 56899


Q ss_pred             EEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-------EeecCCee
Q 010748          284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-------WAVAADVE  356 (502)
Q Consensus       284 sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~v~  356 (502)
                      +|+.++.|++||+.+.........+.. ..++.+++..+.+|++|+.||.|++|++++.......       ..|...|.
T Consensus       180 ~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~  258 (388)
T d1erja_         180 SGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY  258 (388)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEE
T ss_pred             ccccceeeeeeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEE
Confidence            999999999999999988887775554 5556666655489999999999999999877644321       24577899


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC---CCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      +++|+|++. ++++++.||.|++||+++......   ............|...|++++|+|++ .+|++|+.||.|++||
T Consensus       259 ~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd  336 (388)
T d1erja_         259 SVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWD  336 (388)
T ss_dssp             EEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEE
T ss_pred             EEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEE
Confidence            999999865 899999999999999987643211   11123455667899999999999998 8999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCcEEEEEE------cCCCCcEEEEEeCCCcEEEEECC
Q 010748          434 LSNNQPSCIASRNPKAGAVFSVAF------SEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~------spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      +.+++  ++..+.+|.+.|.++++      +|++. +|++|+.||+|+||+++
T Consensus       337 ~~~~~--~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         337 KKSGN--PLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTTCC--EEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred             CCCCc--EEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeee
Confidence            99988  57778899999999986      56777 59999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.5e-35  Score=280.30  Aligned_cols=245  Identities=16%  Similarity=0.204  Sum_probs=209.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+|+.||.++ ++.|.+|+++...                           ....+.+|...|++++|+|+ +++||+|
T Consensus        26 ~~~g~~l~~~~-~~~v~i~~~~~~~---------------------------~~~~~~~H~~~v~~~~~sp~-g~~latg   76 (311)
T d1nr0a1          26 TPAGDKIQYCN-GTSVYTVPVGSLT---------------------------DTEIYTEHSHQTTVAKTSPS-GYYCASG   76 (311)
T ss_dssp             CTTSSEEEEEE-TTEEEEEETTCSS---------------------------CCEEECCCSSCEEEEEECTT-SSEEEEE
T ss_pred             cCCCCEEEEEe-CCEEEEEECCCCc---------------------------eeEEEcCCCCCEEEEEEeCC-CCeEecc
Confidence            89999999986 5679999997532                           22245689999999999999 6799999


Q ss_pred             ecCCcEEEEeCCCCeee--EeeccCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCccceEeecCCeeEEEeC
Q 010748          286 SADKQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSF--DRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      +.||+|+|||+.+++..  ..+..|...|.+++|+|++ ++|++++.  ++.+++|++.+.+.......|...|.+++|+
T Consensus        77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~  155 (311)
T d1nr0a1          77 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK  155 (311)
T ss_dssp             ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC
T ss_pred             ccCceEeeeeeeccccccccccccccCccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999887643  5578899999999999999 78888875  4669999999888777677788899999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      |+++..+++|+.||.|++||+++.         .....+..|..+|+++.|+|++ .+|++++.|+.|++||+.++....
T Consensus       156 ~~~~~~l~sgs~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         156 PSRPFRIISGSDDNTVAIFEGPPF---------KFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             SSSSCEEEEEETTSCEEEEETTTB---------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccceeeeccccccccccccccccc---------ccccccccccccccccccCccc-cccccccccccccccccccccccc
Confidence            998878999999999999999986         7788888999999999999998 899999999999999999887433


Q ss_pred             EEE-----ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          442 IAS-----RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       442 ~~~-----~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ...     ..+|.+.|++++|+|++++ |++|+.||.|+|||+.++++++.+..+
T Consensus       226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~-l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         226 VFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccccccccccccccccccccCCCCCE-EEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            322     2357889999999999994 889999999999999999988765443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.9e-35  Score=283.98  Aligned_cols=291  Identities=14%  Similarity=0.135  Sum_probs=218.3

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ++|.+++|+|++++||+|+.++   .+.||..+............|...    ..+++|       +|++++||+|+.|+
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~---~i~iw~~~~~~~~~~~~l~gH~~~----V~~l~f-------sp~~~~l~s~s~D~   73 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNH---EVHIYEKSGNKWVQVHELKEHNGQ----VTGVDW-------APDSNRIVTCGTDR   73 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSS---EEEEEEEETTEEEEEEEEECCSSC----EEEEEE-------ETTTTEEEEEETTS
T ss_pred             CCeEEEEECCCCCEEEEEeCCC---EEEEEECCCCCEEEEEEecCCCCC----EEEEEE-------CCCCCEEEEEECCC
Confidence            5699999999999999998776   567777654321000111223322    367777       78999999999999


Q ss_pred             cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~  299 (502)
                      .|+||++....                         ......+.+|...|.+++|+|+ +++|++|+.|++|++|++...
T Consensus        74 ~i~vWd~~~~~-------------------------~~~~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~~  127 (371)
T d1k8kc_          74 NAYVWTLKGRT-------------------------WKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQE  127 (371)
T ss_dssp             CEEEEEEETTE-------------------------EEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETT
T ss_pred             eEEEEeecccc-------------------------cccccccccccccccccccccc-cccceeecccCcceeeeeecc
Confidence            99999986422                         1122334578899999999999 569999999999999998765


Q ss_pred             ee----eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc------------------cceEeecCCeeE
Q 010748          300 KC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS------------------GFKWAVAADVES  357 (502)
Q Consensus       300 ~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------------------~~~~~~~~~v~~  357 (502)
                      ..    ......|...|.+++|+|++ .+|++|+.|++|++|++......                  .....+...|.+
T Consensus       128 ~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  206 (371)
T d1k8kc_         128 NDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG  206 (371)
T ss_dssp             TTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred             cccccccccccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE
Confidence            32    34456789999999999998 89999999999999998654311                  111245677999


Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       358 v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      ++|+|++. ++++++.||.|++||+.+.         ..+..+..|..+|.+++|+|++ .+|++ +.|+.+++|.....
T Consensus       207 ~~~s~~g~-~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~s~~fs~d~-~~la~-g~d~~~~~~~~~~~  274 (371)
T d1k8kc_         207 VCFSANGS-RVAWVSHDSTVCLADADKK---------MAVATLASETLPLLAVTFITES-SLVAA-GHDCFPVLFTYDSA  274 (371)
T ss_dssp             EEECSSSS-EEEEEETTTEEEEEEGGGT---------TEEEEEECSSCCEEEEEEEETT-EEEEE-ETTSSCEEEEEETT
T ss_pred             EEeecccc-cccccccCCcceEEeeecc---------cceeeeecccccceeeeecCCC-CEEEE-EcCCceEEEEeeCC
Confidence            99999875 7999999999999999886         7788889999999999999987 66665 45777777654322


Q ss_pred             CeeEEE---------------------------------------EecCCCCcEEEEEEcCCCC---cEEEEEeCCCcEE
Q 010748          438 QPSCIA---------------------------------------SRNPKAGAVFSVAFSEDSP---FVLAIGGSKGKLE  475 (502)
Q Consensus       438 ~~~~~~---------------------------------------~~~~~~~~v~~~~~spd~~---~ll~sg~~dg~i~  475 (502)
                      ......                                       ....|.+.|+++++.+.+.   ..|+|+|.||.|+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~  354 (371)
T d1k8kc_         275 AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS  354 (371)
T ss_dssp             TTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred             CceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEE
Confidence            100000                                       0013788999999977542   2589999999999


Q ss_pred             EEECCCCc
Q 010748          476 IWDTLSDA  483 (502)
Q Consensus       476 vwd~~~~~  483 (502)
                      |||+.+.+
T Consensus       355 iW~~~~~~  362 (371)
T d1k8kc_         355 IWDVRSLE  362 (371)
T ss_dssp             EEEHHHHH
T ss_pred             EEeCCcCh
Confidence            99996643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-33  Score=268.37  Aligned_cols=287  Identities=18%  Similarity=0.318  Sum_probs=234.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|.+.|.+++|+|++++||+|+.++   .++||.+.....  ...+..|    .....+++|       +|++++|++|
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg---~v~iWd~~~~~~--~~~~~~~----~~~v~~v~~-------~~~~~~l~~~  115 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDG---KLIIWDSYTTNK--VHAIPLR----SSWVMTCAY-------APSGNYVACG  115 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTT---EEEEEETTTTEE--EEEEECS----CSCEEEEEE-------CTTSSEEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCC---ceeeeeccccee--EEEEecc----cccEEeeEe-------eccceeeeee
Confidence            35999999999999999999999887   456665443321  1111222    233467777       7999999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|+.|++|+.......                       ......+.+|...+........  ..++.+..+.....|.
T Consensus       116 ~~d~~i~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  170 (340)
T d1tbga_         116 GLDNICSIYNLKTREGN-----------------------VRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWD  170 (340)
T ss_dssp             ETTCCEEEEESSSSCSC-----------------------CCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEE
T ss_pred             cccceeecccccccccc-----------------------cccceecccccccccccccccc--cccccccccccccccc
Confidence            99999999998643221                       1222344567777777766655  4788889999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      ............+...+....+.+.+ .++++|+.|+.|++||+++.........|...|.+++|+|++. ++++|+.||
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~  248 (340)
T d1tbga_         171 IETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDA  248 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             cccccccccccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC-EEEEEeCCC
Confidence            99888888888888999999999988 8999999999999999999887776667889999999999765 899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceE--EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFT--LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      .|++|+++..         ..+..  ...|...|++++|+|++ .+|++|+.||.|++||+.+++  ++..+.+|.++|+
T Consensus       249 ~i~~~~~~~~---------~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~--~~~~~~~H~~~V~  316 (340)
T d1tbga_         249 TCRLFDLRAD---------QELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVS  316 (340)
T ss_dssp             CEEEEETTTT---------EEEEEECCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEE
T ss_pred             eEEEEeeccc---------ccccccccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCc--EEEEEcCCCCCEE
Confidence            9999999876         33333  34667889999999998 899999999999999999887  6778889999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          454 SVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       454 ~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      +++|+|++++ |++|+.||.|+|||
T Consensus       317 ~l~~s~d~~~-l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         317 CLGVTDDGMA-VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTSSC-EEEEETTSCEEEEC
T ss_pred             EEEEeCCCCE-EEEEccCCEEEEeC
Confidence            9999999995 89999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-34  Score=272.86  Aligned_cols=293  Identities=13%  Similarity=0.163  Sum_probs=219.6

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCC---eeeeeccccCCCcceeeeecCCCCCCC--CCCEEEE
Q 010748          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN---LYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNFMAV  214 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~la~  214 (502)
                      ..+.++.|+|+++.|++++..    ...|+.++........   +..|+...    ..|++|       +|  ++.+||+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~----~~~i~~~~~~~~~~~~~~~~~gh~~~~----v~~v~f-------sP~~~g~~las   82 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGK----SAFVRCLDDGDSKVPPVVQFTGHGSSV----VTTVKF-------SPIKGSQYLCS   82 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETT----EEEEEECCSSCCSSCSEEEECTTTTSC----EEEEEE-------CSSTTCCEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCC----CEEEEEEeCCCCCccceEEEeCCCCCC----EEEEEE-------eeCCCCCEEEE
Confidence            356889999999999988644    2345556544332112   22343322    367777       44  6789999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe--cCCcEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVK  292 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs--~dg~v~  292 (502)
                      |+.||+|+|||+..........                   ......+..|..+|.+++|++++ .+|++++  .++.++
T Consensus        83 gs~Dg~i~iWd~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~  142 (325)
T d1pgua1          83 GDESGKVIVWGWTFDKESNSVE-------------------VNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGV  142 (325)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEE-------------------EEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEE
T ss_pred             EeCCCCEEEeeecCCcceeeee-------------------cccccccccccCcEEEEEECCCC-CccceeeccccceEE
Confidence            9999999999986533322110                   11122345688999999999995 4666554  467899


Q ss_pred             EEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce---EeecCCeeEEEeCCCCCCEEE
Q 010748          293 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       293 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~~~  369 (502)
                      +|+..+++++..+.+|...|.+++|+|.++.++++++.|+.+++|+++..+.....   ..+...|.+++|+|++..+++
T Consensus       143 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~  222 (325)
T d1pgua1         143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  222 (325)
T ss_dssp             EEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             EEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecc
Confidence            99999999999999999999999999999777899999999999998765543322   244667999999998777999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEc---CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN---PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      +++.||.|++||+++.         ..+..+.+|..++.++.|+   |++ .+|++++.|+.|+|||+.++++.......
T Consensus       223 s~~~d~~i~iwd~~~~---------~~~~~l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         223 TVGSDRKISCFDGKSG---------EFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             EEETTCCEEEEETTTC---------CEEEECCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ccccccceeeeeeccc---------cccccccccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            9999999999999986         6778888888887766665   556 89999999999999999998854444444


Q ss_pred             CCCCcEE--EEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          447 PKAGAVF--SVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       447 ~~~~~v~--~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      .+...+.  ++.+.+++  .|++|+.||.|+|||+
T Consensus       293 ~~~~~~~~~~~~~~~~~--~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         293 KQQLGNQQVGVVATGNG--RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTCGGGCEEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             CCcccCeEEEEEECCCC--EEEEEECCCEEEEEEC
Confidence            4443333  44444444  5889999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-33  Score=267.70  Aligned_cols=248  Identities=15%  Similarity=0.209  Sum_probs=211.2

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|++|       +|+|++||+|+ ||.|+|||+.......+.                      ......+|...|+++
T Consensus        54 V~~v~f-------s~~g~~latg~-dg~V~iWd~~~~~~~~~~----------------------~~~~~~~h~~~I~~v  103 (337)
T d1gxra_          54 VCAVTI-------SNPTRHVYTGG-KGCVKVWDISHPGNKSPV----------------------SQLDCLNRDNYIRSC  103 (337)
T ss_dssp             CCEEEE-------CSSSSEEEEEC-BSEEEEEETTSTTCCSCS----------------------EEEECSCTTSBEEEE
T ss_pred             EEEEEE-------CCCCCEEEEEE-CCEEEEEEccCCccccee----------------------EEeeecCCCCcEEEE
Confidence            367776       89999999998 899999999764432221                      122345799999999


Q ss_pred             EeccCCCcEEEEEecCCcEEEEeCCC--CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe
Q 010748          273 AWNKEFRNILASASADKQVKIWDVAA--GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~dg~v~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  350 (502)
                      +|+|+ +++|++|+.||+|++||+..  ++....+..|...+.++.|+|++ .++++++.++.|++|++++.+.......
T Consensus       104 ~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~  181 (337)
T d1gxra_         104 KLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             EECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEcCC-CCEEEEeeccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            99999 56999999999999999874  45667788899999999999998 8999999999999999998887766667


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      +...+.+++|++++. .+++++.+|.|++||++++         ..+.. ..|...|.+++|+|++ .+|++++.|+.|+
T Consensus       182 ~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~---------~~~~~-~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~  249 (337)
T d1gxra_         182 HTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREG---------RQLQQ-HDFTSQIFSLGYCPTG-EWLAVGMESSNVE  249 (337)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT---------EEEEE-EECSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccc---------eeecc-cccccceEEEEEcccc-cccceeccccccc
Confidence            888999999999865 8999999999999999976         44443 4588999999999998 8999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +||++...   ......|...|++++|+|+++ +|++|+.||.|++||+.+++.+...
T Consensus       250 i~d~~~~~---~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         250 VLHVNKPD---KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             EEETTSSC---EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cccccccc---cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEEc
Confidence            99999887   345677899999999999999 5899999999999999999887553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=269.55  Aligned_cols=279  Identities=19%  Similarity=0.284  Sum_probs=211.2

Q ss_pred             CCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccce
Q 010748          190 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       190 ~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  269 (502)
                      .....|++|       +|+|++||+|+ |+.|+||++.++..+.........         ..............|...|
T Consensus        62 ~~~V~~l~f-------s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~V  124 (388)
T d1erja_          62 TSVVCCVKF-------SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA---------NKDPENLNTSSSPSSDLYI  124 (388)
T ss_dssp             SSCCCEEEE-------CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------CCCCBE
T ss_pred             CCcEEEEEE-------CCCCCEEEEEe-CCeEEEEEecccceEeeecccccc---------cccccccccccccCCCCCE
Confidence            344578888       89999999997 899999999876544322111100         0001111223345788999


Q ss_pred             eeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (502)
                      ++|+|+|+ +++|++|+.||+|++|+...++.+..+.+|...|.++.|++.+ ..+++++.++.+++||+++..... ..
T Consensus       125 ~~l~~s~~-~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~-~~  201 (388)
T d1erja_         125 RSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL-TL  201 (388)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EE
T ss_pred             EEEEECCC-CCcceeccccccccccccccccccccccccccccccccccccc-ccccccccceeeeeeecccccccc-cc
Confidence            99999999 6699999999999999999999999999999999999999998 889999999999999999876554 34


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      .......++.+.+..+.++++++.||.|++|++++.......  ........+|...|++++|+|++ .+|++|+.||.|
T Consensus       202 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i  278 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL--DSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSV  278 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE--C------CCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceee--ccccccccCCCCCEEEEEECCCC-CEEEEEECCCcE
Confidence            455566777777766679999999999999999876311000  01122335688999999999998 899999999999


Q ss_pred             EEEECCCCCe----------eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          430 KLWDLSNNQP----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       430 ~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ++||+.+...          .+......|...|++++|+|+++ +|++|+.||.|++||+.+++++..+.+|.
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~l~~H~  350 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEeCCC
Confidence            9999976532          23455667889999999999999 48999999999999999999988766554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-32  Score=268.72  Aligned_cols=252  Identities=16%  Similarity=0.204  Sum_probs=203.7

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccccee
Q 010748          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  270 (502)
Q Consensus       191 ~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  270 (502)
                      ....|++|       +|+|++||+|+.+|.|+||++...+                         ......+.+|.++|+
T Consensus         8 ~pIt~~~~-------s~dg~~la~~~~~~~i~iw~~~~~~-------------------------~~~~~~l~gH~~~V~   55 (371)
T d1k8kc_           8 EPISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHNGQVT   55 (371)
T ss_dssp             SCCCEEEE-------CTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCSSCEE
T ss_pred             CCeEEEEE-------CCCCCEEEEEeCCCEEEEEECCCCC-------------------------EEEEEEecCCCCCEE
Confidence            34578888       8999999999999999999986422                         122334568999999


Q ss_pred             eEEeccCCCcEEEEEecCCcEEEEeCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748          271 GLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (502)
                      +|+|+|+ +++|++|+.|++|+|||+.++..  ...+.+|...|++++|+|++ +.|++|+.+++|++|++.........
T Consensus        56 ~l~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          56 GVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             EEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             EEEECCC-CCEEEEEECCCeEEEEeeccccccccccccccccccccccccccc-ccceeecccCcceeeeeecccccccc
Confidence            9999999 56999999999999999987754  44557789999999999999 89999999999999998876543222


Q ss_pred             ----EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC---------CCCCccceEEeccCCCeeEEEEcCC
Q 010748          349 ----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       349 ----~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                          ..+...|.+++|+|++. +|++|+.||.|++|++........         ......+.....|...|.+++|+|+
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  212 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  212 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             ccccccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence                23567899999999865 899999999999999876532111         1112345666789999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      + .+|++++.|+.|++||+..++  .+..+..|..+|.+++|+|++. +|++ |.|+.+++|.....
T Consensus       213 g-~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~s~~fs~d~~-~la~-g~d~~~~~~~~~~~  274 (371)
T d1k8kc_         213 G-SRVAWVSHDSTVCLADADKKM--AVATLASETLPLLAVTFITESS-LVAA-GHDCFPVLFTYDSA  274 (371)
T ss_dssp             S-SEEEEEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTE-EEEE-ETTSSCEEEEEETT
T ss_pred             c-ccccccccCCcceEEeeeccc--ceeeeecccccceeeeecCCCC-EEEE-EcCCceEEEEeeCC
Confidence            8 899999999999999999887  5677788999999999999997 4664 56787777665443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.3e-32  Score=254.54  Aligned_cols=288  Identities=16%  Similarity=0.212  Sum_probs=211.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++|+.++   .+++|.++.... ...+...|.    ....++.|       +|+++++ ++
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg---~v~vWd~~~~~~-~~~~~~~h~----~~v~~v~~-------~~~g~~~-~~   72 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEG---HINSWDISTGIS-NRVFPDVHA----TMITGIKT-------TSKGDLF-TV   72 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCE-EECSSCSCS----SCEEEEEE-------CTTSCEE-EE
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCC---eEEEEECCCCcE-EEEEcCCCC----CcEEEEEe-------eccceee-cc
Confidence            45899999999999999999999887   567776544321 001112232    23367777       6888755 45


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|+.|++|++......                        ........|...+.+++|+|++ .+++++ .++.+++|+
T Consensus        73 ~~d~~v~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~s~~g-~~~~~~-~~~~i~~~~  126 (299)
T d1nr0a2          73 SWDDHLKVVPAGGSGVD------------------------SSKAVANKLSSQPLGLAVSADG-DIAVAA-CYKHIAIYS  126 (299)
T ss_dssp             ETTTEEEEECSSSSSSC------------------------TTSCCEEECSSCEEEEEECTTS-SCEEEE-ESSEEEEEE
T ss_pred             cceeeEEEeccCCcccc------------------------cccccccccccccccccccccc-cccccc-ccccccccc
Confidence            56899999998642211                        1111223577889999999994 455544 457899999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~~~d  374 (502)
                      ..  +.....  ....+.+++|+|++ .+|++|+.||.|++||+++..... ....+...|.+++|+|++. ++++++.+
T Consensus       127 ~~--~~~~~~--~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  200 (299)
T d1nr0a2         127 HG--KLTEVP--ISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQS  200 (299)
T ss_dssp             TT--EEEEEE--CSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETT
T ss_pred             cc--cccccc--cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            54  333333  34568899999998 899999999999999998776543 3456788999999999765 89999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-CCcEE
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVF  453 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~  453 (502)
                      |.|++||+.+...      ......+..|..+|++++|+|++ .+|++|+.||.|++||+.+...........| ...|.
T Consensus       201 ~~i~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  273 (299)
T d1nr0a2         201 RKVIPYSVANNFE------LAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  273 (299)
T ss_dssp             SCEEEEEGGGTTE------ESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             ccccccccccccc------ccccccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence            9999999987521      12344567799999999999998 9999999999999999988764444444444 45677


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          454 SVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       454 ~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      ++.|. ++. .|++|+.||.|+|||+.
T Consensus       274 ~~~~~-~~~-~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         274 SVIWL-NET-TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEE-ETT-EEEEEETTSCEEEEECC
T ss_pred             EEEEC-CCC-EEEEEeCCCEEEEEecc
Confidence            77664 456 48889999999999983

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-31  Score=249.63  Aligned_cols=250  Identities=22%  Similarity=0.331  Sum_probs=221.6

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||+|+|||+.++..                           ...+.+|...|.+++
T Consensus        21 ~~l~~-------sp~~~~l~s~s~Dg~i~iWd~~~~~~---------------------------~~~~~~h~~~V~~~~   66 (317)
T d1vyhc1          21 TRVIF-------HPVFSVMVSASEDATIKVWDYETGDF---------------------------ERTLKGHTDSVQDIS   66 (317)
T ss_dssp             EEEEE-------CSSSSEEEEEESSSCEEEEETTTCCC---------------------------CEEECCCSSCEEEEE
T ss_pred             EEEEE-------cCCCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEEeCCCCcEEEEe
Confidence            67877       78999999999999999999976432                           224557999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      |+|+ +.++++++.++.+.+|+....+....+..|...+.++.|+|++ ..+++++.|+.+++||++++........+..
T Consensus        67 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  144 (317)
T d1vyhc1          67 FDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE  144 (317)
T ss_dssp             ECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             eecc-cccccccccccccccccccccccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEEccCCC
Confidence            9999 6699999999999999999999999999999999999999999 8899999999999999999887776777888


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC-----------------
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-----------------  416 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-----------------  416 (502)
                      .+.+++|+|++. ++++++.||.|++|++++.         .....+..|...+.++.|+|..                 
T Consensus       145 ~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (317)
T d1vyhc1         145 WVRMVRPNQDGT-LIASCSNDQTVRVWVVATK---------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  214 (317)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             cceeeecccCCC-EEEEEeCCCeEEEEeeccc---------eeeEEEecCCCCceEEEEeeccccceeeccccceeeeec
Confidence            999999999765 8999999999999999986         6778888999999999998754                 


Q ss_pred             --CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          417 --PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       417 --~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                        ..++++++.|+.|++|++.+++  ++..+.+|...|.+++|+|++++ |++|+.||.|+|||+.+++.+....+|.
T Consensus       215 ~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~  289 (317)
T d1vyhc1         215 KPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHE  289 (317)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             cCCceeEeccCCCEEEEEECCCCc--EEEEEeCCCCCEEEEEECCCCCE-EEEEECCCeEEEEECCCCcEEEEEcCCC
Confidence              2479999999999999999887  57778889999999999999995 8899999999999999998887665543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.9e-29  Score=238.58  Aligned_cols=250  Identities=21%  Similarity=0.299  Sum_probs=212.5

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||.|+|||+.++..                           ...+..|...|.+++
T Consensus        59 ~~l~~-------s~~~~~l~sgs~Dg~v~iWd~~~~~~---------------------------~~~~~~~~~~v~~v~  104 (340)
T d1tbga_          59 YAMHW-------GTDSRLLVSASQDGKLIIWDSYTTNK---------------------------VHAIPLRSSWVMTCA  104 (340)
T ss_dssp             EEEEE-------CTTSSEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSCSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEECCCceeeeeccccee---------------------------EEEEecccccEEeeE
Confidence            68887       79999999999999999999976432                           223457999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (502)
                      |+|+ +.+|++|+.|+.+++|+....    +....+.+|........+...  ..++.+..+.....+............
T Consensus       105 ~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (340)
T d1tbga_         105 YAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTT-SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred             eecc-ceeeeeecccceeecccccccccccccceecccccccccccccccc--ccccccccccccccccccccccccccc
Confidence            9999 569999999999999997654    345667778887777666655  478888999999999988776666566


Q ss_pred             eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      .....+....+.+... ++++|+.++.|++||+++.         .++..+.+|...|++++|+|++ .+|++|+.||.|
T Consensus       182 ~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~---------~~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i  250 (340)
T d1tbga_         182 GHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-NAFATGSDDATC  250 (340)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             ccceeEeeeccccccc-eeEEeecCceEEEEECCCC---------cEEEEEeCCCCCeEEEEECCCC-CEEEEEeCCCeE
Confidence            6778889999988654 8999999999999999986         7888899999999999999998 899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ++|++.............+...|.+++|+|++. +|++|+.||.|+|||+.+++++....+|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             EEEETTTTEEEEEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEeecccccccccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEEEEEcCCC
Confidence            999999888655666677788899999999999 58999999999999999999887766553

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-30  Score=246.43  Aligned_cols=256  Identities=13%  Similarity=0.146  Sum_probs=196.1

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCC-cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc-ccc
Q 010748          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEP-AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDS  268 (502)
Q Consensus       191 ~~~~~~~~~~~~~~~s~~~~~la~g~~dg-~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~  268 (502)
                      ..+++++|       +|+++.||+++.+. .|+.|+.....                         ......+.+| ...
T Consensus        18 ~~~t~l~~-------~~~~~~la~~~~~~~~i~~~~~~~~~-------------------------~~~~~~~~gh~~~~   65 (325)
T d1pgua1          18 NFTTHLSY-------DPTTNAIAYPCGKSAFVRCLDDGDSK-------------------------VPPVVQFTGHGSSV   65 (325)
T ss_dssp             TCCCCCEE-------ETTTTEEEEEETTEEEEEECCSSCCS-------------------------SCSEEEECTTTTSC
T ss_pred             CCeEEEEE-------CCCCCEEEEEeCCCEEEEEEeCCCCC-------------------------ccceEEEeCCCCCC
Confidence            34566666       78999999886543 35556543211                         1112233456 568


Q ss_pred             eeeEEeccC-CCcEEEEEecCCcEEEEeCCCCeee--------EeeccCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEE
Q 010748          269 VLGLAWNKE-FRNILASASADKQVKIWDVAAGKCN--------LTLEHHTDKVQAVAWNHHSPQILLSGSF--DRSVVMK  337 (502)
Q Consensus       269 V~~l~~~~~-~~~~l~sgs~dg~v~vwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~l~s~s~--dg~i~iw  337 (502)
                      |++++|+|. .+.+|++|+.||+|+|||+..++..        ..+..|.++|.+++|++++ .+|++++.  ++.+++|
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEE
Confidence            999999985 3569999999999999998754322        2345688999999999999 66666654  6789999


Q ss_pred             ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE---EeccCCCeeEEEEcC
Q 010748          338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT---LHAHDKAVCTISYNP  414 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~sp  414 (502)
                      +..+++.......|...|.+++|+|.++.++++++.||.|++|+++..         +....   ...|...|++++|+|
T Consensus       145 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~---------~~~~~~~~~~~~~~~v~~v~~~p  215 (325)
T d1pgua1         145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF---------KFSASDRTHHKQGSFVRDVEFSP  215 (325)
T ss_dssp             ETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB---------EEEEEECSSSCTTCCEEEEEECS
T ss_pred             eecccccceeeeecccccccccccccccceEEEeeccccccccccccc---------ccceecccccCCCCccEEeeecc
Confidence            999887766666788999999999998878889999999999999865         22233   346778899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc---CCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          415 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       415 ~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +++.+|++++.|+.|++||+++++  .+..+.+|..++.++.|+   |++. +|++++.|+.|+|||+.+++.++....+
T Consensus       216 d~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         216 DSGEFVITVGSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             TTCCEEEEEETTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ccceeccccccccceeeeeecccc--ccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            866899999999999999999888  566676676665544444   6777 4899999999999999999988765443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=7e-29  Score=233.43  Aligned_cols=241  Identities=13%  Similarity=0.166  Sum_probs=190.3

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||.|++||+.++....                          ....+|...|++++
T Consensus        16 ~~l~~-------s~dg~~l~s~s~Dg~v~vWd~~~~~~~~--------------------------~~~~~h~~~v~~v~   62 (299)
T d1nr0a2          16 TALSS-------SADGKTLFSADAEGHINSWDISTGISNR--------------------------VFPDVHATMITGIK   62 (299)
T ss_dssp             EEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEE--------------------------CSSCSCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEcCCCeEEEEECCCCcEEE--------------------------EEcCCCCCcEEEEE
Confidence            67777       8999999999999999999997643221                          12246899999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCee---eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  350 (502)
                      |+|++  .+++++.|+.+++|++.....   ......+...+.+++|+|++ .+++++ .++.+++|+...    .....
T Consensus        63 ~~~~g--~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~-~~~~i~~~~~~~----~~~~~  134 (299)
T d1nr0a2          63 TTSKG--DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAA-CYKHIAIYSHGK----LTEVP  134 (299)
T ss_dssp             ECTTS--CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEE-ESSEEEEEETTE----EEEEE
T ss_pred             eeccc--eeecccceeeEEEeccCCcccccccccccccccccccccccccc-cccccc-cccccccccccc----ccccc
Confidence            99984  366778899999999865432   12234577889999999998 655554 567899998543    12334


Q ss_pred             ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      ....+.+++|+|++. ++++|+.+|.|++||+++.        .........|...|++++|+|++ .+|++++.|+.|+
T Consensus       135 ~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~--------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~  204 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGA--------SVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVI  204 (299)
T ss_dssp             CSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETT--------EEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccc--------ccccccccccccccccccccccc-ccccccccccccc
Confidence            556788999999765 8999999999999999876        22334456789999999999988 8999999999999


Q ss_pred             EEECCCCCee-EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748          431 LWDLSNNQPS-CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       431 vwd~~~~~~~-~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      +||+.++... ....+..|..+|++++|+|++. +|++|+.||.|+|||+.++....
T Consensus       205 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             EEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCC
T ss_pred             ccccccccccccccccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcce
Confidence            9999876532 2345567889999999999999 59999999999999998876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-28  Score=235.61  Aligned_cols=289  Identities=16%  Similarity=0.251  Sum_probs=206.0

Q ss_pred             CCcccc-ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          137 EDSEDL-EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v-~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      .|...| .|  +++++++|++|+.++   .++||.+.....  ...+..|..    ...|++|       +| +++|++|
T Consensus        10 GH~~~vitc--~~~~~~~l~tgs~Dg---~i~vWd~~~~~~--~~~l~~H~~----~V~~l~~-------s~-~~~l~s~   70 (355)
T d1nexb2          10 GHMTSVITC--LQFEDNYVITGADDK---MIRVYDSINKKF--LLQLSGHDG----GVWALKY-------AH-GGILVSG   70 (355)
T ss_dssp             CCSSSCEEE--EEEETTEEEEEETTT---EEEEEETTTTEE--EEEEECCSS----CEEEEEE-------ET-TTEEEEE
T ss_pred             CcCCCcEEE--EEECCCEEEEEeCCC---eEEEEECCCCcE--EEEEECCCC----CEEEEEE-------cC-CCEEEEE
Confidence            477776 44  556789999999887   556665543321  111222332    3367877       45 4689999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|+.|++|++........                         .....+...+..+.++++ ..++++++.|+.|++|+
T Consensus        71 s~D~~i~iw~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~iw~  124 (355)
T d1nexb2          71 STDRTVRVWDIKKGCCTHV-------------------------FEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWK  124 (355)
T ss_dssp             ETTCCEEEEETTTTEEEEE-------------------------ECCCSSCEEEEEEEEETT-EEEEEEEETTSEEEEEE
T ss_pred             ecccccccccccccccccc-------------------------cccccccccccccccccc-cceeeeecCCCcEEEEE
Confidence            9999999999875332211                         112234455666777787 66899999999999999


Q ss_pred             CCCCeeeEee-----------------------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748          296 VAAGKCNLTL-----------------------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       296 ~~~~~~~~~~-----------------------~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      +.+...+...                       ..|...+.+  +.+++ .+++++..|+.|++||+++.+.......+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  201 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHT  201 (355)
T ss_dssp             CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEET-TEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ccCCceeccccccceeccceeccccccceeeeeeeccccccc--ccccc-ceeeeecccceeeeeecccccceeeeeccc
Confidence            9876443221                       223334443  33445 789999999999999999887666555677


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      ..+.++.|+|.+. .+++++.||.|++|+++++         ..+..+.+|...|+++++++   .+|++|+.||.|++|
T Consensus       202 ~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iw  268 (355)
T d1nexb2         202 DRIYSTIYDHERK-RCISASMDTTIRIWDLENG---------ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGW  268 (355)
T ss_dssp             SCEEEEEEETTTT-EEEEEETTSCEEEEETTTC---------CEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEE
T ss_pred             cccccccccccce-eeecccccceEEeeecccc---------cccccccccccccccccccc---ceeeeeecccccccc
Confidence            8899999999765 8999999999999999986         77888999999999999985   789999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEE-EEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSV-AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~-~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      |+++...  ...  .|...+.++ .+++++. +|++ +.||.|+|||+.++++++..+..+
T Consensus       269 d~~~~~~--~~~--~~~~~~~~~~~~~~~~~-~l~~-g~d~~i~vwd~~tg~~~~~~~~~~  323 (355)
T d1nexb2         269 DANDYSR--KFS--YHHTNLSAITTFYVSDN-ILVS-GSENQFNIYNLRSGKLVHANILKD  323 (355)
T ss_dssp             ETTTCCE--EEE--EECTTCCCCCEEEECSS-EEEE-EETTEEEEEETTTCCBCCSCTTTT
T ss_pred             cccccce--ecc--cccCCceEEEEEcCCCC-EEEE-EeCCEEEEEECCCCCEEEEEecCC
Confidence            9998763  222  233445444 4566665 4655 468999999999999887654433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-28  Score=235.46  Aligned_cols=299  Identities=19%  Similarity=0.219  Sum_probs=209.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCC-cceeeeecCCCCCCCCCCEEEEe
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF-PLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      .|...|.+++|+|+ ++|++|+.++   .+++|.+.....     ........... ..+..+       ++++.++++|
T Consensus        51 ~H~~~V~~l~~s~~-~~l~s~s~D~---~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  114 (355)
T d1nexb2          51 GHDGGVWALKYAHG-GILVSGSTDR---TVRVWDIKKGCC-----THVFEGHNSTVRCLDIVE-------YKNIKYIVTG  114 (355)
T ss_dssp             CCSSCEEEEEEETT-TEEEEEETTC---CEEEEETTTTEE-----EEEECCCSSCEEEEEEEE-------ETTEEEEEEE
T ss_pred             CCCCCEEEEEEcCC-CEEEEEeccc---cccccccccccc-----cccccccccccccccccc-------ccccceeeee
Confidence            48889999999985 5788888776   456665544321     11111111000 011112       5789999999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|+.|++|++.................    .................|...|.+...  + +++++++..|+.|++||
T Consensus       115 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~--~-~~~~~~~~~d~~i~~~d  187 (355)
T d1nexb2         115 SRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENPYFVGVLRGHMASVRTVSG--H-GNIVVSGSYDNTLIVWD  187 (355)
T ss_dssp             ETTSEEEEEECCC-----------CCCE----EESCTTTCTTEEEEEECCSSCEEEEEE--E-TTEEEEEETTSCEEEEE
T ss_pred             cCCCcEEEEEccCCceeccccccceecc----ceeccccccceeeeeeecccccccccc--c-cceeeeecccceeeeee
Confidence            9999999999976543322111000000    000001111222233345566665544  3 45899999999999999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg  375 (502)
                      +.+++.+..+.++...+.++.|+|.+ .++++++.|+.|++|+++++........|...|.+++|++   .++++|+.||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg  263 (355)
T d1nexb2         188 VAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADG  263 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS---SEEEEECTTS
T ss_pred             cccccceeeeeccccccccccccccc-eeeecccccceEEeeecccccccccccccccccccccccc---ceeeeeeccc
Confidence            99999999999999999999999999 8999999999999999999888777778889999999985   3899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE-cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE
Q 010748          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      .|++||+++.           ...+..|...+.++.+ ++++ .+|++|+ |+.|+|||+++++.. ...+.+|.++|++
T Consensus       264 ~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~l~~g~-d~~i~vwd~~tg~~~-~~~~~~~~~~V~~  329 (355)
T d1nexb2         264 SIRGWDANDY-----------SRKFSYHHTNLSAITTFYVSD-NILVSGS-ENQFNIYNLRSGKLV-HANILKDADQIWS  329 (355)
T ss_dssp             EEEEEETTTC-----------CEEEEEECTTCCCCCEEEECS-SEEEEEE-TTEEEEEETTTCCBC-CSCTTTTCSEEEE
T ss_pred             cccccccccc-----------ceecccccCCceEEEEEcCCC-CEEEEEe-CCEEEEEECCCCCEE-EEEecCCCCCEEE
Confidence            9999999865           2345566666666654 5544 7766665 899999999998732 1245678899999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          455 VAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       455 ~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      ++|+|+.  ++++++.||.++||-
T Consensus       330 v~~~~~~--~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         330 VNFKGKT--LVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEETTE--EEEEEESSSCEEEEE
T ss_pred             EEEcCCe--EEEEEECCCcEEEEE
Confidence            9999873  688899999866654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.5e-28  Score=230.11  Aligned_cols=304  Identities=21%  Similarity=0.264  Sum_probs=209.5

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+.|.+ +++++|++||+|+.++   .++||.+.....  ...+..|.    ....+++|       +  +++|++|+
T Consensus        14 GH~~~V~s-~~~~~g~~l~sgs~Dg---~i~vWd~~~~~~--~~~~~~h~----~~V~~v~~-------~--~~~l~s~s   74 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCGNRIVSGSDDN---TLKVWSAVTGKC--LRTLVGHT----GGVWSSQM-------R--DNIIISGS   74 (342)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEETTS---CEEEEETTTCCE--EEECCCCS----SCEEEEEE-------E--TTEEEEEE
T ss_pred             CcCCceEE-EEEECCCEEEEEeCCC---eEEEEECCCCCE--EEEEeCCC----CCEEEEEe-------C--CCccccce
Confidence            58888865 4788899999999887   567776544321  11112232    22356666       3  45999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchh----h---------hhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEE----K---------KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~----~---------~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      .|+.+++|+...................    .         ..-.............+..+....  ..+.+. ...++
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~  151 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYD-GRRVV  151 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE--EEEEEC-SSCEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccc--eeeccc-cceee
Confidence            9999999998754322211100000000    0         000000000011111111111111  222333 34788


Q ss_pred             EEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748          284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       284 sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  363 (502)
                      +++.|+.|++||+...+++..+.+|...+.++.+.  + .+|++|+.||.|++||++..+.......+...+.++++++ 
T Consensus       152 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-  227 (342)
T d2ovrb2         152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-  227 (342)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-
T ss_pred             eecCCCeEEEeecccceeeEEEcCcccccccccCC--C-CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC-
Confidence            99999999999999999999999998888777664  4 7899999999999999999887776667888899998876 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe---ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                        .++++++.||.|++||+...         .....+.   .|...+.++.+++   .++++|+.||+|++||+++++..
T Consensus       228 --~~l~s~s~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         228 --NILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             --TEEEEEETTSCEEEEETTTC---------CEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEE
T ss_pred             --CEEEEEcCCCEEEEEecccc---------cccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEE
Confidence              38999999999999999876         4444444   3566777777764   78999999999999999998843


Q ss_pred             EEEEe---cCCCCcEEEEEEcCCCCcEEEEEeCCCc----EEEEECCC
Q 010748          441 CIASR---NPKAGAVFSVAFSEDSPFVLAIGGSKGK----LEIWDTLS  481 (502)
Q Consensus       441 ~~~~~---~~~~~~v~~~~~spd~~~ll~sg~~dg~----i~vwd~~~  481 (502)
                      .....   .+|.+.|++++|+|++. +||+|+.||+    |++||+..
T Consensus       294 ~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         294 RNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCC
Confidence            32221   35678899999999998 6999999985    99999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.9e-28  Score=237.36  Aligned_cols=299  Identities=14%  Similarity=0.164  Sum_probs=194.7

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++++++  ++|++|+.++   .++||.........+............-...+...........++.+++++
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~---~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDG---YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTS---EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             CcccCccEEEEEeC--CEEEEEECCC---eEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            46999999998764  6899998876   677777554432111111111000000000111111101112346788999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC----CcEEEEEecCCcE
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF----RNILASASADKQV  291 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~sgs~dg~v  291 (502)
                      +.||.|++|++............                 .........+...+..++|.+..    ..++++++.||+|
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  148 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFE-----------------KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT  148 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEE-----------------EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred             eCCCcEEEEEccCCCceeeeecc-----------------ccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcE
Confidence            99999999998654433221110                 00111122456677888887753    3589999999999


Q ss_pred             EEEeCCCCe------------------eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc------c
Q 010748          292 KIWDVAAGK------------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------F  347 (502)
Q Consensus       292 ~vwd~~~~~------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~  347 (502)
                      ++|++....                  .......+...+.+++|+|++  +|++|+.||+|++||+++.+...      .
T Consensus       149 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~  226 (393)
T d1sq9a_         149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHS  226 (393)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred             EEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccc
Confidence            999974221                  111223456678999999987  88999999999999998876432      2


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCC---cEEEEECCCCCCCCC----CCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPD----STSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg---~v~i~d~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ...|...|.+++|+|++. +|++|+.|+   .|++||+.++.....    .........+.+|...|++++|+|++ .+|
T Consensus       227 l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l  304 (393)
T d1sq9a_         227 MINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETL  304 (393)
T ss_dssp             --CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEE
T ss_pred             cccccceEEEcccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC-Cee
Confidence            235778999999999875 899998887   489999987621000    00012223335799999999999998 999


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE----EEEEcCCCC
Q 010748          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF----SVAFSEDSP  462 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~----~~~~spd~~  462 (502)
                      ++|+.|++|+|||+.+++  ++.++.+|...|.    .++|+|++.
T Consensus       305 ~S~s~D~~v~vWd~~~g~--~~~~l~gH~~~v~~~~~~~~~~~~~~  348 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGD  348 (393)
T ss_dssp             EEEETTSEEEEEETTTTE--EEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred             EEECCCCEEEEEECCCCC--EEEEECCcCCcccCCccEEEECCCCC
Confidence            999999999999999987  6777778866553    355666655

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.8e-28  Score=230.11  Aligned_cols=301  Identities=15%  Similarity=0.170  Sum_probs=208.1

Q ss_pred             CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      .+.|++.|.+|+|+|++++||+|+.++   +++||.++....   ..............+|++|.      .+++.+|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg---~v~iwd~~~~~~---~~~~~~~~~h~~~V~~v~f~------~~~~~~l~s   74 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDG---SLTVYKFDIQAK---NVDLLQSLRYKHPLLCCNFI------DNTDLQIYV   74 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTS---EEEEEEEETTTT---EEEEEEEEECSSCEEEEEEE------ESSSEEEEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCC---eEEEEEccCCCc---ceEEEEecCCCCCEEEEEEe------CCCCCEEEE
Confidence            356889999999999999999999886   778888876543   21111111123345788884      234678999


Q ss_pred             ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                      |+.||.|++|++........                          ....+........+.+. ...+++++.++++++|
T Consensus        75 g~~d~~v~~w~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w  127 (342)
T d1yfqa_          75 GTVQGEILKVDLIGSPSFQA--------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EETTSCEEEECSSSSSSEEE--------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred             cccccceeeeeccccccccc--------------------------ccccccccccccccccc-ccccccccccccccee
Confidence            99999999999875332211                          11123333344444554 6699999999999999


Q ss_pred             eCCCCee----eEeeccC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE---eecCCeeEEEeCCCCC
Q 010748          295 DVAAGKC----NLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVESLAWDPHAE  365 (502)
Q Consensus       295 d~~~~~~----~~~~~~h--~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~~  365 (502)
                      |++++..    ......+  ......+.+.+.+ ..+++++.|+.|++|+++.........   .....+.+..+.+...
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eccccccceeeecccccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            9865432    2222222  2334455666666 789999999999999998776544332   2345577777777777


Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCc------cceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ------SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~------~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      ..+++++.+|.+.+|++.............      .......|...|++++|+|++ .+|+||+.||.|+|||+.+++ 
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~-  284 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK-  284 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE-
T ss_pred             CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCc-
Confidence            789999999999999987653322111000      111123566789999999998 899999999999999999887 


Q ss_pred             eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                       .+..+..+ ..+..++|+|++. +|++|+.|+.+++|...
T Consensus       285 -~l~~~~~~-~~~~~~~~s~~~~-~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         285 -KIKNFAKF-NEDSVVKIACSDN-ILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -EEEECCCC-SSSEEEEEEECSS-EEEEEEECTHHHHCSSS
T ss_pred             -EEEEecCC-CCCEEEEEEeCCC-EEEEEEcCCcEEEeeee
Confidence             45555433 3445577888888 47788888888888653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-28  Score=239.58  Aligned_cols=262  Identities=15%  Similarity=0.230  Sum_probs=181.6

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCccccccccc-CcccceeeEEeccCCCcEEEEEec
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +++|++|+.|++|+|||..+.+...+.....                ........ .|...+..+..+.....++++++.
T Consensus        24 ~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          24 NSFTVSCSGDGYLKVWDNKLLDNENPKDKSY----------------SHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSEEEEEETTSEEEEEESBCCTTCCGGGGEE----------------EEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCEEEEEECCCeEEEEECCCCCCCcccceeE----------------eeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            5799999999999999987655433211000                00000000 122233334444433457889999


Q ss_pred             CCcEEEEeCCCCeeeEe-----e-----ccCCCCeEEEEEcCCC----CcEEEEEeCCCcEEEEecCCCCCcc-------
Q 010748          288 DKQVKIWDVAAGKCNLT-----L-----EHHTDKVQAVAWNHHS----PQILLSGSFDRSVVMKDARISTHSG-------  346 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~-----~-----~~h~~~v~~l~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~-------  346 (502)
                      ||.|++|++........     .     ..+...+..++|.+..    ..++++++.||++++|++.......       
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            99999999764422111     1     2345667888888764    2688999999999999986432110       


Q ss_pred             -----------ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          347 -----------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       347 -----------~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                                 ....+...+.+++|+|++  ++++|+.||.|++||+++......   ......+.+|..+|++++|+|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~---~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYN---FESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEE---EECCC---CCCCCEEEEEECSS
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccc---cccccccccccceEEEcccccc
Confidence                       001123458899999975  799999999999999987621000   0122345679999999999999


Q ss_pred             CCCEEEEEeCCCc---EEEEECCCCCeeEEE-----------EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          416 VPNLLATGSTDKM---VKLWDLSNNQPSCIA-----------SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       416 ~~~~l~t~s~dg~---i~vwd~~~~~~~~~~-----------~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      + .+|++|+.|++   |++||+.+++.....           ...+|.+.|++++|+|+++ +|++|+.|++|+|||+.+
T Consensus       243 g-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         243 G-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             T-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT
T ss_pred             c-ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCC
Confidence            8 99999999875   999999988743222           2247999999999999999 599999999999999999


Q ss_pred             CccccccccCCC
Q 010748          482 DAGISNRFSKYS  493 (502)
Q Consensus       482 ~~~~~~~~~~~~  493 (502)
                      ++++..+.+|..
T Consensus       321 g~~~~~l~gH~~  332 (393)
T d1sq9a_         321 KERITTLNMHCD  332 (393)
T ss_dssp             TEEEEEEECCGG
T ss_pred             CCEEEEECCcCC
Confidence            999887766543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-26  Score=220.11  Aligned_cols=234  Identities=24%  Similarity=0.368  Sum_probs=179.8

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ++|++||+|+.||+|+|||+.+++.                           ...+.+|...|.+++|+|+   +|++|+
T Consensus        25 ~~g~~l~sgs~Dg~i~vWd~~~~~~---------------------------~~~~~~h~~~V~~v~~~~~---~l~s~s   74 (342)
T d2ovrb2          25 FCGNRIVSGSDDNTLKVWSAVTGKC---------------------------LRTLVGHTGGVWSSQMRDN---IIISGS   74 (342)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCE---------------------------EEECCCCSSCEEEEEEETT---EEEEEE
T ss_pred             ECCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEEeCCCCCEEEEEeCCC---ccccce
Confidence            4689999999999999999976432                           2345689999999999875   899999


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEE--------------------------------------cCCCCcEEEEE
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--------------------------------------NHHSPQILLSG  328 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~--------------------------------------~~~~~~~l~s~  328 (502)
                      .|+++++|+............+...+....+                                      .+.. ..++++
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  153 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-RRVVSG  153 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS-SCEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc-ceeeee
Confidence            9999999998876554444333322222211                                      1222 457788


Q ss_pred             eCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCee
Q 010748          329 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  408 (502)
Q Consensus       329 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~  408 (502)
                      +.++.|++||++..........+...+..+.+++   ..+++++.||.|++||++..         .++..+..|...+.
T Consensus       154 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~~~dg~i~~~d~~~~---------~~~~~~~~~~~~v~  221 (342)
T d2ovrb2         154 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG---IHVVSGSLDTSIRVWDVETG---------NCIHTLTGHQSLTS  221 (342)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECS---SEEEEEETTSCEEEEETTTC---------CEEEEECCCCSCEE
T ss_pred             cCCCeEEEeecccceeeEEEcCcccccccccCCC---CEEEEEeCCCeEEEeecccc---------eeeeEeccccccee
Confidence            8888888888877665554555555666665543   48999999999999999986         77888999999999


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE-EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748          409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA-SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ++++++   ++|++|+.|+.|++||+...+..... ....|...+.++.++++   ++++|+.||.|+|||+.+++.+++
T Consensus       222 ~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg~~i~~  295 (342)
T d2ovrb2         222 GMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTGEFIRN  295 (342)
T ss_dssp             EEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC---eeEEEcCCCEEEEEECCCCCEEEE
Confidence            998875   78999999999999999987743322 23456778888888764   589999999999999999998876


Q ss_pred             cc
Q 010748          488 RF  489 (502)
Q Consensus       488 ~~  489 (502)
                      ..
T Consensus       296 ~~  297 (342)
T d2ovrb2         296 LV  297 (342)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-27  Score=225.80  Aligned_cols=256  Identities=12%  Similarity=0.139  Sum_probs=189.4

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|++++||+|+.||+|+|||+.......                        ......+|..+|++++
T Consensus        15 ~~l~f-------sp~~~~L~s~s~Dg~v~iwd~~~~~~~~------------------------~~~~~~~h~~~V~~v~   63 (342)
T d1yfqa_          15 SDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNV------------------------DLLQSLRYKHPLLCCN   63 (342)
T ss_dssp             EEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTEE------------------------EEEEEEECSSCEEEEE
T ss_pred             EEEEE-------eCCCCEEEEEECCCeEEEEEccCCCcce------------------------EEEEecCCCCCEEEEE
Confidence            67777       7899999999999999999996532211                        1112236999999999


Q ss_pred             eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeE-EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee-
Q 010748          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-  351 (502)
Q Consensus       274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-  351 (502)
                      |+|+++.+|++|+.||+|++|++..+........+...+. ...+.+.. ..+++++.++++++||++........... 
T Consensus        64 f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~  142 (342)
T d1yfqa_          64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             EEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             EeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccccc-ccccccccccccceeeccccccceeeeccc
Confidence            9998778999999999999999998877776655554443 44444444 89999999999999999876544322221 


Q ss_pred             -----cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC
Q 010748          352 -----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       352 -----~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                           ......+.+.+.+ ..+++++.+|.|++|+++....      .........+...+.+..+.+..+..+++++.|
T Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  215 (342)
T d1yfqa_         143 NSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCED------DNGTIEESGLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             CSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTT------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             ccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcc------cceeeeecccccceeeeEeecCCCCEEEeecCC
Confidence                 1223445555544 4799999999999999987632      122333444556677777777666899999999


Q ss_pred             CcEEEEECCCCCee-------EE------EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          427 KMVKLWDLSNNQPS-------CI------ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       427 g~i~vwd~~~~~~~-------~~------~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |.+.+|++......       ..      .....|...|++++|+|++++ |++|+.||.|+|||+.+++.+.+..
T Consensus       216 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTTEEEEECC
T ss_pred             CeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccE-EEEECCCCEEEEEECCCCcEEEEec
Confidence            99999998653210       11      112356678999999999995 9999999999999999998876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-26  Score=214.77  Aligned_cols=271  Identities=20%  Similarity=0.372  Sum_probs=202.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      +|...|.|+  ++++++||+|+.++   .++||.++....  ...+..|...    .+|+.|         ++++|++|+
T Consensus        13 ~~~~~V~c~--~~d~~~l~sgs~Dg---~i~vWd~~~~~~--~~~l~~H~~~----V~~v~~---------~~~~l~s~s   72 (293)
T d1p22a2          13 ETSKGVYCL--QYDDQKIVSGLRDN---TIKIWDKNTLEC--KRILTGHTGS----VLCLQY---------DERVIITGS   72 (293)
T ss_dssp             SSCCCEEEE--ECCSSEEEEEESSS---CEEEEESSSCCE--EEEECCCSSC----EEEEEC---------CSSEEEEEE
T ss_pred             CCCCCEEEE--EEcCCEEEEEeCCC---eEEEEECCCCcE--EEEEecCCCC----Eeeeec---------ccceeeccc
Confidence            466778875  45899999999887   567776654331  1112223222    256654         688999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                      .|+.|++|++........                           ...+....  ..+.+. ...++++..++.+.+|++
T Consensus        73 ~D~~i~~~~~~~~~~~~~---------------------------~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~  122 (293)
T d1p22a2          73 SDSTVRVWDVNTGEMLNT---------------------------LIHHCEAV--LHLRFN-NGMMVTCSKDRSIAVWDM  122 (293)
T ss_dssp             TTSCEEEEESSSCCEEEE---------------------------ECCCCSCE--EEEECC-TTEEEEEETTSCEEEEEC
T ss_pred             cccccccccccccccccc---------------------------cccccccc--cccccc-ccceeecccccceeEeec
Confidence            999999999975432211                           11122222  233344 348899999999999999


Q ss_pred             CCCe---eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          297 AAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       297 ~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      .+..   ....+..|...|.++.+.+   ..+++++.|+.|++||+++.+.......+...+..+.+++   ..+++++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~  196 (293)
T d1p22a2         123 ASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSS  196 (293)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEET
T ss_pred             cccccccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEcccccccccccCCC---CeEEEecC
Confidence            8764   3445577889999888876   4688999999999999999887766666777888888864   37999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-------CeeEEEEec
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-------QPSCIASRN  446 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~-------~~~~~~~~~  446 (502)
                      ||.|++||+++.         ..+....+|...+..+.+  ++ .+|++|+.||.|++||+...       ...++..+.
T Consensus       197 dg~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~--~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (293)
T d1p22a2         197 DNTIRLWDIECG---------ACLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV  264 (293)
T ss_dssp             TSCEEEEETTTC---------CEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             CCEEEEEecccc---------eeeeeecccceeeeeccc--cc-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEec
Confidence            999999999986         677888888888876554  44 89999999999999997532       123577888


Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd  478 (502)
                      +|.+.|++++|++  . .|++|+.||+|+|||
T Consensus       265 ~H~~~V~~v~~d~--~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         265 EHSGRVFRLQFDE--F-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCSSCCCCEEECS--S-CEEECCSSSEEEEEC
T ss_pred             CCCCCEEEEEEcC--C-EEEEEecCCEEEEeC
Confidence            9999999999964  4 489999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-27  Score=221.43  Aligned_cols=266  Identities=13%  Similarity=0.164  Sum_probs=197.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|    |++|+.++   .+++|  +...     ....|..    ...|+.+       ++ +..++++
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg---~v~~W--d~~~-----~~~~h~~----~V~~~~~-------~~-~~~~~s~   63 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDG---RIMEW--SSSS-----MHQDHSN----LIVSLDN-------SK-AQEYSSI   63 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTS---CEEET--TTTE-----EECCCCS----CEEEEEC-------CS-TTCCEEE
T ss_pred             CCCCCceEEEEECc----EEEEeCCC---eEEEE--ECCC-----CCCCCCC----CEEEEEe-------cC-CCeEEEE
Confidence            35899999999998    88999887   44555  3322     1222322    2245554       43 5568999


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd  295 (502)
                      +.|++|++|++...                                  .+...+.+++++++ +.++ ..+.++.+.+|+
T Consensus        64 s~D~~v~~w~~~~~----------------------------------~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~  107 (287)
T d1pgua2          64 SWDDTLKVNGITKH----------------------------------EFGSQPKVASANND-GFTA-VLTNDDDLLILQ  107 (287)
T ss_dssp             ETTTEEEETTEEEE----------------------------------ECSSCEEEEEECSS-SEEE-EEETTSEEEEEE
T ss_pred             eecccccccccccc----------------------------------ccccceeeeeeccC-CceE-EEeecccceeee
Confidence            99999999997521                                  12345778888887 4344 455667899999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCccc-eEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~~  373 (502)
                      ..+++.+..+..+ ..+.  ++++.+ ..+++++.+ +.+++|++........ ...+...+++++|+|++. +|++|+.
T Consensus       108 ~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~  182 (287)
T d1pgua2         108 SFTGDIIKSVRLN-SPGS--AVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDV  182 (287)
T ss_dssp             TTTCCEEEEEECS-SCEE--EEEECS-SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             ccceeeeeecccc-ceee--eeeccC-cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccc
Confidence            9999988888643 3444  455666 566666665 5799999876543322 224667899999999875 8999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC---------CCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---------PNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---------~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      +|.|++||+.+.        ......+..|...|.+++|+|.+         ..+|++|+.|++|+|||+.... ..+..
T Consensus       183 dg~i~i~d~~~~--------~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-~~~~~  253 (287)
T d1pgua2         183 MGKILLYDLQSR--------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKA  253 (287)
T ss_dssp             TSCEEEEETTTT--------EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEE
T ss_pred             cccccceeeccc--------ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC-eEEEE
Confidence            999999999876        22333467899999999999853         3689999999999999997744 25667


Q ss_pred             ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      +.+|.+.|++++|+|++.  |+++|.||.|++|++
T Consensus       254 ~~~h~~~V~~v~~~~~~~--l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LNAHKDGVNNLLWETPST--LVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSSTTCEEEEEEEETTE--EEEEETTSCEEEEEE
T ss_pred             eCCCCCCeEEEEECCCCE--EEEEECCCeEEEEEE
Confidence            788999999999999874  788999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.4e-26  Score=221.18  Aligned_cols=291  Identities=10%  Similarity=0.053  Sum_probs=206.6

Q ss_pred             cccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC-
Q 010748          142 LEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP-  219 (502)
Q Consensus       142 v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg-  219 (502)
                      +.+-.||| +|+++|+++. +     +||+|+...+.  .....|    .....++.|       +|+|++|++++.+. 
T Consensus         5 ~~~~~fSP~dG~~~a~~~~-g-----~v~v~d~~~~~--~~~~~~----~~~v~~~~~-------spDg~~l~~~~~~~g   65 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVSR-G-----QAFIQDVSGTY--VLKVPE----PLRIRYVRR-------GGDTKVAFIHGTREG   65 (360)
T ss_dssp             GGEEEEEECGGGCEEEEET-T-----EEEEECTTSSB--EEECSC----CSCEEEEEE-------CSSSEEEEEEEETTE
T ss_pred             hhcccccCCCCCEEEEEEC-C-----eEEEEECCCCc--EEEccC----CCCEEEEEE-------CCCCCEEEEEEcCCC
Confidence            34567999 8999998864 3     78888776542  111222    233467777       89999998876553 


Q ss_pred             -cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748          220 -AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       220 -~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~  298 (502)
                       .|++||+.++..                            ..+..|...|.+++|+|+ +++|++++.++.+++|++.+
T Consensus        66 ~~v~v~d~~~~~~----------------------------~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          66 DFLGIYDYRTGKA----------------------------EKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             EEEEEEETTTCCE----------------------------EECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEECCCCcE----------------------------EEeeCCCceEEeeeeccc-ccccceeccccccccccccc
Confidence             799999975321                            124478999999999999 56999999999999999999


Q ss_pred             CeeeEeeccCCCCeEEEEEcCCCCcEEEEEe----------CCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGS----------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~  368 (502)
                      +++...+..|...+.+++|+|++ ++|+.++          .++.+++|++.+..... ...+...+..++|+|++. .|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~-~l  193 (360)
T d1k32a3         117 GKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSK-NL  193 (360)
T ss_dssp             CCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSC-EE
T ss_pred             cceeeeeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCC-EE
Confidence            99999999999999999999999 6776543          34568999998765443 344567788999999876 78


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCC----------------------------------CCCccceE----------EeccC
Q 010748          369 VVSLEDGTIKGFDIRTAKSDPDS----------------------------------TSQQSSFT----------LHAHD  404 (502)
Q Consensus       369 ~~~~~dg~v~i~d~~~~~~~~~~----------------------------------~~~~~~~~----------~~~h~  404 (502)
                      ++++.++.+.+|+..........                                  .....+..          +..+.
T Consensus       194 ~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
T d1k32a3         194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE  273 (360)
T ss_dssp             EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS
T ss_pred             EEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecC
Confidence            88899999999987543210000                                  00000111          11122


Q ss_pred             CCeeEEEEcCCCC--CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748          405 KAVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       405 ~~v~~l~~sp~~~--~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      ..+..+.+.+.++  .++++++.++.|++||+.+++.   ..   |.+.|.+++|+|||++ |++++.||.|++||+.++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~---~~~~v~~~~~SpDG~~-l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV---TE---VKNNLTDLRLSADRKT-VMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE---EE---EEEEEEEEEECTTSCE-EEEEETTSCEEEEESSCT
T ss_pred             CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE---EE---ecCCcCEEEECCCCCE-EEEEECCCeEEEEECCCC
Confidence            2222233332221  2456666788999999988763   22   2356899999999995 889999999999999998


Q ss_pred             cccccccc
Q 010748          483 AGISNRFS  490 (502)
Q Consensus       483 ~~~~~~~~  490 (502)
                      +...++..
T Consensus       347 ~~~~~~~~  354 (360)
T d1k32a3         347 EDERTVET  354 (360)
T ss_dssp             TSCEECCC
T ss_pred             CcceEEEe
Confidence            87665543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-24  Score=202.23  Aligned_cols=225  Identities=26%  Similarity=0.465  Sum_probs=180.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++++++||+|+.||+|+|||+.+++                           ....+.+|...|++|+|++   ++|++|
T Consensus        22 ~~d~~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~~~V~~v~~~~---~~l~s~   71 (293)
T d1p22a2          22 QYDDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHTGSVLCLQYDE---RVIITG   71 (293)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCSSCEEEEECCS---SEEEEE
T ss_pred             EEcCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEecCCCCEeeeeccc---ceeecc
Confidence            3579999999999999999997533                           2334568999999999854   489999


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce---EeecCCeeEEEeCC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDP  362 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~  362 (502)
                      +.|++|++|++..+........+.....+  +.+.. ..++++..++.+.+|+..........   ..+...+.++.+.+
T Consensus        72 s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  148 (293)
T d1p22a2          72 SSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  148 (293)
T ss_dssp             ETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             ccccccccccccccccccccccccccccc--ccccc-cceeecccccceeEeeccccccccccccccccccccccceecc
Confidence            99999999999999887777655444433  33444 57999999999999999877654322   24556677777765


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                         ..+++++.|+.|++||+++.         .++..+.+|...+..+.+++   .++++++.||.|++||+++..  .+
T Consensus       149 ---~~~~~~s~d~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~--~~  211 (293)
T d1p22a2         149 ---KYIVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA--CL  211 (293)
T ss_dssp             ---TEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC--EE
T ss_pred             ---cccccccCCCceeeecCCCC---------cEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce--ee
Confidence               36888999999999999986         77888899999999988874   789999999999999999887  56


Q ss_pred             EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .....+...+..+  ++++. .|++|+.||.|++||+.+..
T Consensus       212 ~~~~~~~~~v~~~--~~~~~-~l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         212 RVLEGHEELVRCI--RFDNK-RIVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             EEECCCSSCEEEE--ECCSS-EEEEEETTSCEEEEEHHHHT
T ss_pred             eeecccceeeeec--cccce-EEEEEcCCCEEEEEECCCCc
Confidence            6777788888754  45666 58999999999999986543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-23  Score=196.36  Aligned_cols=219  Identities=16%  Similarity=0.196  Sum_probs=164.6

Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v  291 (502)
                      |++|+.||+|++||+.++                                ..+|...|.+++|++. . .+++++.|++|
T Consensus        24 l~sgs~Dg~v~~Wd~~~~--------------------------------~~~h~~~V~~~~~~~~-~-~~~s~s~D~~v   69 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSM--------------------------------HQDHSNLIVSLDNSKA-Q-EYSSISWDDTL   69 (287)
T ss_dssp             TEEEETTSCEEETTTTEE--------------------------------ECCCCSCEEEEECCST-T-CCEEEETTTEE
T ss_pred             EEEEeCCCeEEEEECCCC--------------------------------CCCCCCCEEEEEecCC-C-eEEEEeecccc
Confidence            999999999999998631                                1369999999999976 3 68999999999


Q ss_pred             EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEE
Q 010748          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~  371 (502)
                      ++|++...+       +...+.++.+++++ . ++..+.++.+.+|+..+..... .......+.  ++++++. .++++
T Consensus        70 ~~w~~~~~~-------~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~v~  136 (287)
T d1pgua2          70 KVNGITKHE-------FGSQPKVASANNDG-F-TAVLTNDDDLLILQSFTGDIIK-SVRLNSPGS--AVSLSQN-YVAVG  136 (287)
T ss_dssp             EETTEEEEE-------CSSCEEEEEECSSS-E-EEEEETTSEEEEEETTTCCEEE-EEECSSCEE--EEEECSS-EEEEE
T ss_pred             ccccccccc-------cccceeeeeeccCC-c-eEEEeecccceeeeccceeeee-eccccceee--eeeccCc-ceeee
Confidence            999975432       34457788898887 4 4445667788899988776544 333444444  4455545 56666


Q ss_pred             eCC-CcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010748          372 LED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  449 (502)
Q Consensus       372 ~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~  449 (502)
                      +.+ +.+++|++...         .....+ ..|...+++++|+|++ .+|++|+.||.|++||+.++.. .......|.
T Consensus       137 ~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~  205 (287)
T d1pgua2         137 LEEGNTIQVFKLSDL---------EVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREV-KTSRWAFRT  205 (287)
T ss_dssp             ETTTSCEEEEETTEE---------EEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-EECCSCCCS
T ss_pred             ccccceeeeeecccc---------ceeeeeeeccCCceeEEEeccCc-cccccccccccccceeeccccc-ccccccccc
Confidence            655 57999998764         333333 3577899999999998 8999999999999999998763 233467889


Q ss_pred             CcEEEEEEcCCCC---------cEEEEEeCCCcEEEEECCCCcccccc
Q 010748          450 GAVFSVAFSEDSP---------FVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       450 ~~v~~~~~spd~~---------~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+|.+++|+|.+.         .+|++|+.|+.|+|||+.+.......
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~  253 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  253 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE
Confidence            9999999988542         25999999999999999875544333

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.3e-23  Score=206.08  Aligned_cols=263  Identities=13%  Similarity=0.054  Sum_probs=181.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ||||++|++++.|+.|++||+.+........                      .....+|...+.+++|+|+|..+++++
T Consensus        70 SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~----------------------i~~~~~~~~~~~s~~~spDG~~l~v~~  127 (426)
T d1hzua2          70 SASGRYLLVIGRDARIDMIDLWAKEPTKVAE----------------------IKIGIEARSVESSKFKGYEDRYTIAGA  127 (426)
T ss_dssp             CTTSCEEEEEETTSEEEEEETTSSSCEEEEE----------------------EECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEccCCceeEEEE----------------------EeCCCCCcceEEeeeecCCCCEEEEee
Confidence            9999999999999999999998765332111                      112236788889999999976566777


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCe-----------EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecC
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKV-----------QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAA  353 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v-----------~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~  353 (502)
                      ..++++++||..++.++..+..|...+           ..+.+++++..++++....+.+.+++........ ....+..
T Consensus       128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  207 (426)
T d1hzua2         128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP  207 (426)
T ss_dssp             EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred             cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC
Confidence            789999999999998888776655444           4445555553333333334455555554443322 2345667


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCC---------------------------------------------
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD---------------------------------------------  388 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~---------------------------------------------  388 (502)
                      .+..+.|+|++..++++......+.+++..+....                                             
T Consensus       208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~  287 (426)
T d1hzua2         208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  287 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred             ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence            78899999988765666666667777776644320                                             


Q ss_pred             CCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE-------EeCCCcEEEEECCCCCeeEEE-------EecCCCCcEEE
Q 010748          389 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-------GSTDKMVKLWDLSNNQPSCIA-------SRNPKAGAVFS  454 (502)
Q Consensus       389 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t-------~s~dg~i~vwd~~~~~~~~~~-------~~~~~~~~v~~  454 (502)
                      ......+....+.+|...+..++|+|++ .+|++       ++.+++|+|||+.+++.....       .+..+...|.+
T Consensus       288 ~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~  366 (426)
T d1hzua2         288 HPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ  366 (426)
T ss_dssp             CTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred             cccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence            0000123455677889999999999998 77774       456789999999987643222       12345677999


Q ss_pred             EEEcCCCCcEEEEE----eCCCcEEEEECCCCccccccccC
Q 010748          455 VAFSEDSPFVLAIG----GSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       455 ~~~spd~~~ll~sg----~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ++|+|||+++++++    +.+|.|+|||..+.+....+-+.
T Consensus       367 ~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         367 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             EEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             EEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence            99999999876654    35788999999999876554433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=1.9e-21  Score=181.62  Aligned_cols=268  Identities=14%  Similarity=0.138  Sum_probs=194.5

Q ss_pred             EEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE-EecCCCcEEEeeCCCCCCcCcceecCCcchhh
Q 010748          167 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEK  245 (502)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~  245 (502)
                      .|.+|+....   .  .-+...+...|..+++       +|+|++|+ +++.++.|++||+.+...+.            
T Consensus        13 ~v~v~D~~t~---~--~~~~i~~g~~p~~va~-------spdG~~l~v~~~~~~~i~v~d~~t~~~~~------------   68 (301)
T d1l0qa2          13 NISVIDVTSN---K--VTATIPVGSNPMGAVI-------SPDGTKVYVANAHSNDVSIIDTATNNVIA------------   68 (301)
T ss_dssp             EEEEEETTTT---E--EEEEEECSSSEEEEEE-------CTTSSEEEEEEGGGTEEEEEETTTTEEEE------------
T ss_pred             EEEEEECCCC---e--EEEEEECCCCceEEEE-------eCCCCEEEEEECCCCEEEEEECCCCceee------------
Confidence            4455554443   2  2233445555666665       89999874 66788999999998643322            


Q ss_pred             hhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEE
Q 010748          246 KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL  325 (502)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  325 (502)
                                     .+..| ..+..++|++++..+++++..++.+.+|+..+++....+.. ...+.++.|+|++..++
T Consensus        69 ---------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~  131 (301)
T d1l0qa2          69 ---------------TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLY  131 (301)
T ss_dssp             ---------------EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEE
T ss_pred             ---------------eeecc-ccccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeee
Confidence                           12233 34688999999777778888889999999999998888874 45678899999996666


Q ss_pred             EEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC
Q 010748          326 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK  405 (502)
Q Consensus       326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~  405 (502)
                      +++..++.+.+|+..+..... .......+..+.++|++..+++++...+.+.+|+....         ....... +..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~  200 (301)
T d1l0qa2         132 VTNNGDKTVSVINTVTKAVIN-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTVK-VEA  200 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEEE-CSS
T ss_pred             eeeccccceeeeeccccceee-ecccCCCceEEEeeccccceeeecccccccccccccce---------eeeeccc-ccC
Confidence            777788999999998876554 44556678899999987755555555677778877654         3333333 445


Q ss_pred             CeeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          406 AVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .+..++|++++..+++++.  .++.|++||+.+++.  +..+..+ ..+.+++|+|||++++++++.++.|++||+.+++
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeE--EEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            6788999999844433332  346899999998873  4444433 5689999999999877888889999999999999


Q ss_pred             cccccc
Q 010748          484 GISNRF  489 (502)
Q Consensus       484 ~~~~~~  489 (502)
                      .+.++-
T Consensus       278 ~~~~~~  283 (301)
T d1l0qa2         278 ITATMA  283 (301)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            887653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=3.6e-22  Score=197.40  Aligned_cols=300  Identities=10%  Similarity=-0.034  Sum_probs=196.1

Q ss_pred             CCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCC
Q 010748          149 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV  228 (502)
Q Consensus       149 p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~  228 (502)
                      +...++++.+.++     +|.+|+....   .+..  .......|..+++       ||||++|++++.|+.|++||+.+
T Consensus        30 ~~~~~~v~~~d~g-----~v~v~D~~t~---~v~~--~~~~g~~~~~v~f-------SpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          30 LENLFSVTLRDAG-----QIALIDGSTY---EIKT--VLDTGYAVHISRL-------SASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             GGGEEEEEETTTT-----EEEEEETTTC---CEEE--EEECSSCEEEEEE-------CTTSCEEEEEETTSEEEEEETTS
T ss_pred             CCcEEEEEEcCCC-----EEEEEECCCC---cEEE--EEeCCCCeeEEEE-------CCCCCEEEEEcCCCCEEEEEeeC
Confidence            3334456666665     6666665544   2221  1112223444444       99999999999999999999986


Q ss_pred             CCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc-
Q 010748          229 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-  307 (502)
Q Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-  307 (502)
                      .+....                      .......+|.+.+.+..|+|+|..++++++.+++|++||..+++++..+.. 
T Consensus        93 ~~~~~~----------------------~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2          93 KEPTTV----------------------AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             SSCCEE----------------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             CCceEE----------------------EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence            543211                      111122357788888999999766678999999999999999998877654 


Q ss_pred             ----------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748          308 ----------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       308 ----------h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~  376 (502)
                                +......+.++|++..++++...++.|.+|+....+... ........+..++|+|++..+++++..++.
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~  230 (432)
T d1qksa2         151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK  230 (432)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             CccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccce
Confidence                      345567889999996667788888999999998766433 234556678999999998866666667778


Q ss_pred             EEEEECCCCCCCC---------CCCC--------CccceE-----------E-------eccCCCeeEEEEcCCCCCEEE
Q 010748          377 IKGFDIRTAKSDP---------DSTS--------QQSSFT-----------L-------HAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       377 v~i~d~~~~~~~~---------~~~~--------~~~~~~-----------~-------~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      +.++|..+.....         ....        ..+...           .       ..|...+....++|++ ..++
T Consensus       231 v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~  309 (432)
T d1qksa2         231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLF  309 (432)
T ss_dssp             EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCC
T ss_pred             EEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCC-CeEE
Confidence            9999987653200         0000        000000           0       0122245566677765 5666


Q ss_pred             EEeCCCcEEEEECCCCCe------------------------eEEE------EecCCCCcEEEEEEcCCCCcEEEEEe--
Q 010748          422 TGSTDKMVKLWDLSNNQP------------------------SCIA------SRNPKAGAVFSVAFSEDSPFVLAIGG--  469 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~------------------------~~~~------~~~~~~~~v~~~~~spd~~~ll~sg~--  469 (502)
                      +++.++..++|......+                        ..+.      .+..|...|.+++|+|||++++++..  
T Consensus       310 ~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~  389 (432)
T d1qksa2         310 IKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG  389 (432)
T ss_dssp             EECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred             EEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecC
Confidence            777777777775433210                        0010      11245567999999999998666643  


Q ss_pred             --CCCcEEEEECCCCcccccc
Q 010748          470 --SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       470 --~dg~i~vwd~~~~~~~~~~  488 (502)
                        .+|.|.|||..+.+....+
T Consensus       390 ~~~~g~i~i~D~~T~k~~~~i  410 (432)
T d1qksa2         390 KDQESALVVVDDKTLELKHVI  410 (432)
T ss_dssp             TTSCCEEEEEETTTTEEEEEE
T ss_pred             CCCCCcEEEEECCCceEEeEe
Confidence              4688999999999875544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=3.5e-21  Score=184.54  Aligned_cols=244  Identities=12%  Similarity=0.094  Sum_probs=169.1

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.|+|+|++|++++.+++   -.|++|+...+.. .....|    .....+++|       +|+|++|++++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~-~~~~~~----~~~v~~~~~-------spdg~~l~~~~  104 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKA-EKFEEN----LGNVFAMGV-------DRNGKFAVVAN  104 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCE-EECCCC----CCSEEEEEE-------CTTSSEEEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcE-EEeeCC----CceEEeeee-------cccccccceec
Confidence            36788999999999999998876652   1355565544411 112222    222356776       89999999999


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe----------
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS----------  286 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs----------  286 (502)
                      .++.+++|++.....                           ...+..|...+.+++|+|++. +|+.++          
T Consensus       105 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~  156 (360)
T d1k32a3         105 DRFEIMTVDLETGKP---------------------------TVIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGY  156 (360)
T ss_dssp             TTSEEEEEETTTCCE---------------------------EEEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSC
T ss_pred             cccccccccccccce---------------------------eeeeecccccccchhhcccee-eeeeeccccccceeec
Confidence            999999999976432                           223346888899999999954 666443          


Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc----c---------------
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG----F---------------  347 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~---------------  347 (502)
                      .++.+++|++.+++..... .|...+.++.|+|++ +.|++++.++.+.+|+........    .               
T Consensus       157 ~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK  234 (360)
T ss_dssp             CEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred             cccceeeeccccCceeeec-ccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccce
Confidence            3456999999988765544 467889999999999 899999999999999865321100    0               


Q ss_pred             ---------------------eEe---ecCCeeEEEeCCC----------CC--CEEEEEeCCCcEEEEECCCCCCCCCC
Q 010748          348 ---------------------KWA---VAADVESLAWDPH----------AE--HSFVVSLEDGTIKGFDIRTAKSDPDS  391 (502)
Q Consensus       348 ---------------------~~~---~~~~v~~v~~~~~----------~~--~~~~~~~~dg~v~i~d~~~~~~~~~~  391 (502)
                                           ...   ..+....+...+.          +.  .+++.++.++.|++||+.+.      
T Consensus       235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------  308 (360)
T d1k32a3         235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR------  308 (360)
T ss_dssp             CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC------
T ss_pred             ECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC------
Confidence                                 000   0111222322221          11  12344456788999998865      


Q ss_pred             CCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       392 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                         + .   ..|.+.|.+++|+|+| ++|++++.||.|++||+..+..
T Consensus       309 ---~-~---~~~~~~v~~~~~SpDG-~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         309 ---K-V---TEVKNNLTDLRLSADR-KTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             ---C-E---EEEEEEEEEEEECTTS-CEEEEEETTSCEEEEESSCTTS
T ss_pred             ---e-E---EEecCCcCEEEECCCC-CEEEEEECCCeEEEEECCCCCc
Confidence               2 2   2344569999999998 8999999999999999998773

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=9.7e-20  Score=172.50  Aligned_cols=278  Identities=15%  Similarity=0.153  Sum_probs=184.9

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeecccc---CCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCC
Q 010748          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIII---PAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLD  227 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~  227 (502)
                      +++++++.++     +|++|+....   .  ..+...+   ...|.++++       +|+|++| ++++.++.|.+||+.
T Consensus         2 ~~~vt~~~d~-----~v~v~D~~s~---~--~~~~i~~~~~~~~~~~i~~-------spDg~~l~v~~~~~~~v~v~D~~   64 (337)
T d1pbyb_           2 DYILAPARPD-----KLVVIDTEKM---A--VDKVITIADAGPTPMVPMV-------APGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTT-----EEEEEETTTT---E--EEEEEECTTCTTCCCCEEE-------CTTSSEEEEEETTTTEEEEEETT
T ss_pred             eEEEEEcCCC-----EEEEEECCCC---e--EEEEEECCCCCCCccEEEE-------CCCCCEEEEEECCCCeEEEEECC
Confidence            4788888777     6666665543   2  2222222   223455554       8999987 567788999999998


Q ss_pred             CCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe------------cCCcEEEEe
Q 010748          228 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQVKIWD  295 (502)
Q Consensus       228 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs------------~dg~v~vwd  295 (502)
                      +++.+......                      ....+...+..++|+|++. ++++++            .++.+.+||
T Consensus        65 t~~~~~~~~~~----------------------~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d  121 (337)
T d1pbyb_          65 TGETLGRIDLS----------------------TPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYD  121 (337)
T ss_dssp             TCCEEEEEECC----------------------BTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             CCcEEEEEecC----------------------CCcccccceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeecc
Confidence            76544322111                      1112445677899999954 665554            467899999


Q ss_pred             CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC---------
Q 010748          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH---------  366 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~---------  366 (502)
                      ..+++....+.. ...+.+++|+|++ .++++++  +.+.+||..+...... ...........+.|++..         
T Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~--~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (337)
T d1pbyb_         122 AETLSRRKAFEA-PRQITMLAWARDG-SKLYGLG--RDLHVMDPEAGTLVED-KPIQSWEAETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             TTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEES--SSEEEEETTTTEEEEE-ECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred             ccCCeEEEeccc-cCCceEEEEcCCC-CEEEEEc--CCcceeeeecCcEEEE-eecCCccccceecCCcceeeccccccc
Confidence            999999888874 5568899999999 7777775  4577899877653321 111111111111111110         


Q ss_pred             --------------EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          367 --------------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       367 --------------~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                                    ....+..++.+.+|+..++        ......+..+...+..+.++|++ .+++++  ++.|++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~  265 (337)
T d1pbyb_         197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETG--------EMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESF  265 (337)
T ss_dssp             EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC--------CEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEE
T ss_pred             eeeeeeeeeeeccceeeecccCccEEEEEcCCC--------cEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEE
Confidence                          1111223456888888876        23444556677888999999987 666655  5789999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |+.+++.  +.... +...+.+++|+|+|++ |++++.+|.|+|||+.+.+.+.++-
T Consensus       266 d~~~~~~--~~~~~-~~~~~~~~~~s~dG~~-l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         266 DLEKNAS--IKRVP-LPHSYYSVNVSTDGST-VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ETTTTEE--EEEEE-CSSCCCEEEECTTSCE-EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCcE--EEEEc-CCCCEEEEEECCCCCE-EEEEeCCCcEEEEECCCCcEEEEEE
Confidence            9999874  33333 4466899999999995 7789999999999999999887753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=7.9e-20  Score=173.78  Aligned_cols=289  Identities=11%  Similarity=0.068  Sum_probs=190.2

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEE
Q 010748          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEI  223 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-a~g~~dg~I~i  223 (502)
                      ++|++++++|++++.++     .|++|+....   .+...........|.++.|       +|||++| ++++.++.|++
T Consensus         2 ~a~~~~~~~l~~~~~~~-----~v~v~D~~t~---~~~~t~~~~~~~~p~~l~~-------spDG~~l~v~~~~~~~v~~   66 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPN-----NLHVVDVASD---TVYKSCVMPDKFGPGTAMM-------APDNRTAYVLNNHYGDIYG   66 (346)
T ss_dssp             CCCCTTCEEEEEEETTT-----EEEEEETTTT---EEEEEEECSSCCSSCEEEE-------CTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcCCC-----EEEEEECCCC---CEEEEEEcCCCCCcceEEE-------CCCCCEEEEEECCCCcEEE
Confidence            57899999999999887     6666666654   4332222222345667777       8999987 55567899999


Q ss_pred             eeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe------------cCCcE
Q 010748          224 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQV  291 (502)
Q Consensus       224 wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs------------~dg~v  291 (502)
                      ||+.+.........                     ......+...+..++|+|++. +|++++            .++.+
T Consensus        67 ~d~~t~~~~~~~~~---------------------~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i  124 (346)
T d1jmxb_          67 IDLDTCKNTFHANL---------------------SSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRL  124 (346)
T ss_dssp             EETTTTEEEEEEES---------------------CCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEE
T ss_pred             EeCccCeeeeeecc---------------------cccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceE
Confidence            99987544332111                     011123445677899999965 555543            46789


Q ss_pred             EEEeCCCCeeeEeeccC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC---
Q 010748          292 KIWDVAAGKCNLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH---  366 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~---  366 (502)
                      .+|+..+++....+..+  ...+..+.+++++ .++++   ++.+.+|++.+..... ..........+.++|++..   
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  199 (346)
T d1jmxb_         125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVA---GPDIYKMDVKTGKYTV-ALPLRNWNRKGYSAPDVLYFWP  199 (346)
T ss_dssp             EEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEEEE---SSSEEEECTTTCCEEE-EECSTTCCCTTBCCCBCCCCCC
T ss_pred             EEEecccceeeeEEEeeeccCceEEEEecCCC-EEEEe---CCcceEEEccCCCEEE-EEecCCCccceEEeccccEEEE
Confidence            99999887765544322  3456667777776 55443   3568899987765433 2222233333334443322   


Q ss_pred             ----------------------EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748          367 ----------------------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       367 ----------------------~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                                            .+.++...+.+.+|++.+.        .........|...+..+.+++++ .+++.+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  270 (346)
T d1jmxb_         200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG--------KTHTQEFADLTELYFTGLRSPKD-PNQIYGV  270 (346)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC--------CEEEEEEEECSSCEEEEEECSSC-TTEEEEE
T ss_pred             EecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC--------ceEEEEeecccceeEEEEEeCCC-CEEEEec
Confidence                                  2223334456777887766        23445556788889999999988 4455544


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                       .+.|++||+.+++.  +..+. +...+.+++|+|||++ |++++.+|.|+|||+.+++.+.++-
T Consensus       271 -~~~v~v~d~~~~~~--~~~~~-~~~~~~~va~s~DG~~-l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         271 -LNRLAKYDLKQRKL--IKAAN-LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             -ESEEEEEETTTTEE--EEEEE-CSSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             -CCeEEEEECCCCcE--EEEEc-CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECccCCEEEEEE
Confidence             35799999999874  33333 3356889999999996 7888999999999999999887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=1.1e-19  Score=179.23  Aligned_cols=242  Identities=10%  Similarity=0.013  Sum_probs=169.3

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                      ..++++.+.+|.|+|||+.+++.+.                           .+..| ..+..++|+|+| .+|++++.|
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~---------------------------~l~~g-~~~~~vafSPDG-k~l~~~~~d   82 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVK---------------------------VIDTG-YAVHISRMSASG-RYLLVIGRD   82 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEE---------------------------EEECC-SSEEEEEECTTS-CEEEEEETT
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEE---------------------------EEeCC-CCeeEEEECCCC-CEEEEEeCC
Confidence            3456778889999999998754332                           22234 468999999995 588999999


Q ss_pred             CcEEEEeCCCCeeeEe--e---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe-----------ec
Q 010748          289 KQVKIWDVAAGKCNLT--L---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-----------VA  352 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~--~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------~~  352 (502)
                      ++|++||+.++++...  +   .+|...+.++.|+|+|..+++++..++.+++||..+.........           ..
T Consensus        83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred             CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCC
Confidence            9999999998875432  2   356666778888999944556667899999999998765543332           23


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .....+.+++++..++++....+.+.+++....        .........+...+..+.|+|++..++++...+..+.+|
T Consensus       163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~  234 (426)
T d1hzua2         163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI--------DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVI  234 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECSSS--------SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEeccc--------cceeeEEeccCCccEeeeECCCCcEEEeeeecccceeee
Confidence            344566667766655555555666766666654        233444556778889999999884444444455667777


Q ss_pred             ECCCCCe----------------------------------------------------eEEEEecCCCCcEEEEEEcCC
Q 010748          433 DLSNNQP----------------------------------------------------SCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       433 d~~~~~~----------------------------------------------------~~~~~~~~~~~~v~~~~~spd  460 (502)
                      +..+++.                                                    .....+.+|...+..++|+|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd  314 (426)
T d1hzua2         235 DSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  314 (426)
T ss_dssp             ETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT
T ss_pred             ecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC
Confidence            7654321                                                    123345567778899999999


Q ss_pred             CCcEEE-------EEeCCCcEEEEECCCCcccccc
Q 010748          461 SPFVLA-------IGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       461 ~~~ll~-------sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +++ |+       +++.+++|+|||+.+++.+.+.
T Consensus       315 g~~-l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         315 SSH-LYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             CSE-EEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             Cce-EEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            996 55       3455789999999998877654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=7.9e-18  Score=156.60  Aligned_cols=232  Identities=14%  Similarity=0.112  Sum_probs=174.3

Q ss_pred             EEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEE
Q 010748          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~  292 (502)
                      ++++.++.|.|||+.+++.+..+                            .....+..++|+|+++.++++++.++.|+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i----------------------------~~g~~p~~va~spdG~~l~v~~~~~~~i~   57 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATI----------------------------PVGSNPMGAVISPDGTKVYVANAHSNDVS   57 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE----------------------------ECSSSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEE----------------------------ECCCCceEEEEeCCCCEEEEEECCCCEEE
Confidence            45678899999999875432211                            12245788999999665567888899999


Q ss_pred             EEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe
Q 010748          293 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       293 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~  372 (502)
                      +||+.+++++.++..+. .+..+.|++++..+++++..++.+.+|+..+..... .......+.++.|+|++..+++++.
T Consensus        58 v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          58 IIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG-TVKTGKSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             EEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECSSSEEEEEECTTSSEEEEEET
T ss_pred             EEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee-eccccccceEEEeecCCCeeeeeec
Confidence            99999999999998665 468899999996677777788899999998876554 4456677889999999887777888


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCCeeEEEEecCCCCc
Q 010748          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       373 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      .++.+.+|+..+.         .....+. +...+..+.++|++ ..+++++. .+.+.+|+......  ..... ....
T Consensus       136 ~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~  201 (301)
T d1l0qa2         136 GDKTVSVINTVTK---------AVINTVS-VGRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSV--IDTVK-VEAA  201 (301)
T ss_dssp             TTTEEEEEETTTT---------EEEEEEE-CCSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEE--EEEEE-CSSE
T ss_pred             cccceeeeecccc---------ceeeecc-cCCCceEEEeeccc-cceeeecccccccccccccceee--eeccc-ccCC
Confidence            8899999999876         4444444 44567889999998 55555554 56677888777652  33333 3355


Q ss_pred             EEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCcccccc
Q 010748          452 VFSVAFSEDSPFVLAIGG--SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       452 v~~~~~spd~~~ll~sg~--~dg~i~vwd~~~~~~~~~~  488 (502)
                      +..++|++++.++++++.  .++.|++||+.+++.+.+.
T Consensus       202 ~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             cceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence            788999999997555443  3468999999998877654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.3e-17  Score=157.63  Aligned_cols=285  Identities=11%  Similarity=0.154  Sum_probs=183.2

Q ss_pred             EEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec-CCCcEEEeeCCCCCCcC
Q 010748          155 VCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-MEPAIEIWDLDVIDEVQ  233 (502)
Q Consensus       155 ~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~-~dg~I~iwdl~~~~~~~  233 (502)
                      +++..++   .++||.++...    .+........+..+.+++|       +|||++|++++ .++.|++|+++......
T Consensus         8 v~~~~~~---~I~v~~~~~~~----~l~~~~~~~~~~~v~~la~-------spDG~~L~v~~~~d~~i~~~~i~~~~~~~   73 (333)
T d1ri6a_           8 IASPESQ---QIHVWNLNHEG----ALTLTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLAYRIAPDDGAL   73 (333)
T ss_dssp             EEEGGGT---EEEEEEECTTS----CEEEEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EECCCCC---cEEEEEEcCCC----CeEEEEEEcCCCCEeEEEE-------eCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence            4444443   56777776443    3333333344555666666       89999986554 58999999997533221


Q ss_pred             cceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe-cCCcEEEEeCCCCeeeEe--eccCCC
Q 010748          234 PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAAGKCNLT--LEHHTD  310 (502)
Q Consensus       234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~dg~v~vwd~~~~~~~~~--~~~h~~  310 (502)
                      ...                        ....+...+.+++|+|++. +|++++ .++.|.+|+.........  ...+..
T Consensus        74 ~~~------------------------~~~~~~~~p~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  128 (333)
T d1ri6a_          74 TFA------------------------AESALPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD  128 (333)
T ss_dssp             EEE------------------------EEEECSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEECCCT
T ss_pred             EEe------------------------eecccCCCceEEEEcCCCC-EEeecccCCCceeeeccccccceecccccCCCc
Confidence            110                        1112445677899999955 666665 577899998876654433  345677


Q ss_pred             CeEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCccceE------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECC
Q 010748          311 KVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  383 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~  383 (502)
                      .+.++.++|++ +++++++ .+..|.+|+...........      ........++|++.+...+.+....+...+|+..
T Consensus       129 ~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~  207 (333)
T d1ri6a_         129 GCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  207 (333)
T ss_dssp             TBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             cceEEEeeecc-eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeec
Confidence            88899999999 5555554 56679999987755433221      1234567899999877656666677788888876


Q ss_pred             CCCCCCCCCCCccceEEe------ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEEEE
Q 010748          384 TAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVA  456 (502)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~  456 (502)
                      .....     ........      ........+++++++..+++++..++.+.+|++..... ..+.......+.+.+++
T Consensus       208 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a  282 (333)
T d1ri6a_         208 DPHGN-----IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFN  282 (333)
T ss_dssp             CTTSC-----CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEE
T ss_pred             ccccc-----eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEE
Confidence            54210     01111111      12345677899999855666677788999998876542 22333333445678899


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEC--CCCcc
Q 010748          457 FSEDSPFVLAIGGSKGKLEIWDT--LSDAG  484 (502)
Q Consensus       457 ~spd~~~ll~sg~~dg~i~vwd~--~~~~~  484 (502)
                      |+|||+++++++..++.|+||++  .++.+
T Consensus       283 ~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         283 VDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             ECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            99999986666666789999954  55543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=7.6e-17  Score=155.18  Aligned_cols=313  Identities=10%  Similarity=0.002  Sum_probs=196.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .+...+.+++++|+++.+++..........+||+++....   .+....  ..... ..+.|       +|+|++|++++
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---~~~~~~--~~~~~-~~~a~-------SpDG~~l~va~   84 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHV--NGGFL-PNPVA-------AHSGSEFALAS   84 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC---CEEEEE--eCCCC-ccEEE-------cCCCCEEEEEe
Confidence            3567789999999999998764433333458999987665   333222  12222 24444       89999999875


Q ss_pred             C----------CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE-EE
Q 010748          217 M----------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA-SA  285 (502)
Q Consensus       217 ~----------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~-sg  285 (502)
                      .          ++.|.|||+.+++..........                 ....   -......+.|++++..+++ ..
T Consensus        85 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-----------------~~~~---~~~~~~~~~~s~dg~~~~v~~~  144 (373)
T d2madh_          85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA-----------------PRFD---VGPYSWMNANTPNNADLLFFQF  144 (373)
T ss_pred             ecCCcccccccceEEEEEECCCCcEEEEEecCCc-----------------ceeE---eccCCCcEEEEeCCCcEEEEEE
Confidence            3          57899999987654432211000                 0000   0112345788888554332 23


Q ss_pred             ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee------cCCeeEEE
Q 010748          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV------AADVESLA  359 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~v~~v~  359 (502)
                      ..++.+.+|+....+.....    ....++.++|++...+++.+.|+.+.+|+.............      ......+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (373)
T d2madh_         145 AAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQ  220 (373)
T ss_pred             cCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEE
Confidence            44678999998887665444    346788999999778889999999999999876654433221      11233445


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC---CCCccceEEeccCCCeeEEEEcCCCC---------CEEEEEeCCC
Q 010748          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---TSQQSSFTLHAHDKAVCTISYNPLVP---------NLLATGSTDK  427 (502)
Q Consensus       360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~sp~~~---------~~l~t~s~dg  427 (502)
                      +.+.  ..++..+.++.+++|+..........   ..................+++++++.         ..+++...++
T Consensus       221 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  298 (373)
T d2madh_         221 ANKS--GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             ECCC--ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCC
Confidence            5553  35667778889999998765210000   00000001111112233344444441         3445566678


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcE-EEEEeCCCcEEEEECCCCccccccccC
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV-LAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l-l~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      .+.+||+.+++.  +..+. +...+.+++|+|||+++ +++++.++.|+|||+.+++.++++-..
T Consensus       299 ~v~~~d~~t~~~--~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         299 EVTSVTGLVGQT--SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             eEEEEECCCCcE--EEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            899999999883  33333 45678999999999864 578899999999999999998876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.2e-17  Score=164.47  Aligned_cols=197  Identities=11%  Similarity=0.023  Sum_probs=155.8

Q ss_pred             cEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-E----eecCC
Q 010748          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-W----AVAAD  354 (502)
Q Consensus       280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~----~~~~~  354 (502)
                      .++++.+.+|+|.|||+.+++++..+..+ ..+..++|+|+| ++|++++.|++|++||+.+.+..... .    .+.+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            34689999999999999999999999876 469999999999 89999999999999999887653322 1    33444


Q ss_pred             eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-----------cCCCeeEEEEcCCCCCEEEEE
Q 010748          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----------HDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      +.+..|+|+|..+++++..++.|++||..++         .++..+..           +......+.++|++..++++.
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~  181 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETL---------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  181 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTC---------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccc---------cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence            5556778888866788899999999999887         44444433           345567789999986677888


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..++.|.+|+..+.+...+..+. +...+..++|+|+|+++++++...+.+.+++..+++.+...
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         182 KETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ccCCeEEEEEccCCCcceEEEEc-ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            88999999999887754444443 44568899999999987777777789999999888776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=4e-17  Score=155.87  Aligned_cols=299  Identities=11%  Similarity=0.054  Sum_probs=181.7

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~----  216 (502)
                      .+.-.+.+|+++.++++........-.||+++....   .+...  ......| .++|       ||+|++|++.+    
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---~~~~~--~~~g~~~-~~a~-------SpDg~~l~v~~~~~~   69 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGM--IDGGFLP-NPVV-------ADDGSFIAHASTVFS   69 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEE--EEECSSC-EEEE-------CTTSSCEEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC---cEEEE--EECCCCC-ceEE-------cCCCCEEEEEeCCCc
Confidence            445557799999998765333223347888987765   33221  1222222 4555       89999888643    


Q ss_pred             ------CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE--ecC
Q 010748          217 ------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA--SAD  288 (502)
Q Consensus       217 ------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg--s~d  288 (502)
                            .++.|++||+.++...........                    ...........++|+|++. .++.+  +.+
T Consensus        70 ~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~  128 (355)
T d2bbkh_          70 RIARGERTDYVEVFDPVTLLPTADIELPDA--------------------PRFLVGTYPWMTSLTPDGK-TLLFYQFSPA  128 (355)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTC--------------------CCCCBSCCGGGEEECTTSS-EEEEEECSSS
T ss_pred             cccccCCCCEEEEEECCCCCEEEEEecCCc--------------------ceeecCCCCceEEEecCCC-eeEEecCCCC
Confidence                  478999999987654432221110                    0011223456789999955 55544  456


Q ss_pred             CcEEEEeCCCCeeeEeeccCCCC-------eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeC
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDK-------VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~-------v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      ..+.+|+..+++.+..+..+...       ...+.+++++..+++....++.+.+++.......     +...+....+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  203 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE-----DEFLINHPAYS  203 (355)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-----TSCBCSCCEEE
T ss_pred             ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce-----ecceeeecccc
Confidence            78999999999988877644321       2233444444222223333334444443322211     12224445566


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc----------CCCeeEEEEcCCCCCEEEEEeCC-----
Q 010748          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH----------DKAVCTISYNPLVPNLLATGSTD-----  426 (502)
Q Consensus       362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h----------~~~v~~l~~sp~~~~~l~t~s~d-----  426 (502)
                      +.+. .++.++.++.+++|++.....       ..+.....+          ......+++++++ ..++....+     
T Consensus       204 ~~~~-~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~  274 (355)
T d2bbkh_         204 QKAG-RLVWPTYTGKIHQIDLSSGDA-------KFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWR  274 (355)
T ss_dssp             TTTT-EEEEEBTTSEEEEEECTTSSC-------EECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTC
T ss_pred             CCCC-eEEEecCCCeEEEEecCCCcE-------EEEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCcee
Confidence            6544 678888999999999987632       111111111          1234568889988 555544332     


Q ss_pred             -----CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCcccccccc
Q 010748          427 -----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       427 -----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~-ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                           ..|.+||+.+++..  ..+. +...+.+++|+|||+. ++++++.++.|+|||+.+++.++++-.
T Consensus       275 ~~~~~~~v~v~d~~t~~~~--~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         275 HKTASRFVVVLDAKTGERL--AKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             TTSCEEEEEEEETTTCCEE--EEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             ecCCCCeEEEEeCCCCcEE--EEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence                 36999999998843  3332 2355889999999975 456777899999999999999887653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.4e-15  Score=143.40  Aligned_cols=265  Identities=10%  Similarity=0.083  Sum_probs=171.7

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+..++|+|+|++|+++...+  ..+.+|.++....   .+...........|.+++|       +|+|++|++++.
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d--~~i~~~~i~~~~~---~~~~~~~~~~~~~p~~l~~-------spDg~~l~v~~~  102 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDG---ALTFAAESALPGSLTHIST-------DHQGQFVFVGSY  102 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTC---CEEEEEEEECSSCCSEEEE-------CTTSSEEEEEET
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCC--CeEEEEEEeCCCC---cEEEeeecccCCCceEEEE-------cCCCCEEeeccc
Confidence            567899999999999997766433  2567777765544   3333333344555666766       899999999875


Q ss_pred             -CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748          218 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 -dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~  296 (502)
                       ++.|.+|+.......                         .......|...+.++.++|++..++.+...+..|.+|+.
T Consensus       103 ~~~~v~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPV-------------------------GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             TTTEEEEEEEETTEEE-------------------------EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CCCceeeeccccccce-------------------------ecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence             678999987542211                         111223466778899999996544444445667999998


Q ss_pred             CCCeeeEe------eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE----------eecCCeeEEEe
Q 010748          297 AAGKCNLT------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----------AVAADVESLAW  360 (502)
Q Consensus       297 ~~~~~~~~------~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~v~~  360 (502)
                      ........      ..........+.|++.+...+.+....+...+|+...........          ........+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            76532221      123445678999999995445555667788888876543322111          11234667889


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE-eCCCcEEEE--ECCCC
Q 010748          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-STDKMVKLW--DLSNN  437 (502)
Q Consensus       361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~-s~dg~i~vw--d~~~~  437 (502)
                      ++++..+++++...+.+.+|++.....      .........+...+.+++|+|+| ++|+++ ..++.|++|  |..++
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~a~spDG-k~l~va~~~~~~v~v~~id~~tG  310 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGS------VLSKEGFQPTETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQG  310 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSC------CEEEEEEEECSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEETTTT
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCC------EEEEEEEeCCCCCeeEEEEeCCC-CEEEEEECCCCeEEEEEEECCCC
Confidence            999887777788889999999876521      11222223345667899999999 655554 557889999  45566


Q ss_pred             CeeEEEEec
Q 010748          438 QPSCIASRN  446 (502)
Q Consensus       438 ~~~~~~~~~  446 (502)
                      +...+..+.
T Consensus       311 ~l~~~~~~~  319 (333)
T d1ri6a_         311 LLHEKGRYA  319 (333)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEEecc
Confidence            543443333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=1.7e-15  Score=142.63  Aligned_cols=237  Identities=11%  Similarity=0.032  Sum_probs=161.8

Q ss_pred             CEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCC
Q 010748          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  289 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg  289 (502)
                      +||++++.|+.|+|||+.+.+.+..+                         ....+...+.+++|+|+++.++++++.++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-------------------------~~~~~~~~~~~i~~spDg~~l~v~~~~~~   56 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-------------------------TIADAGPTPMVPMVAPGGRIAYATVNKSE   56 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-------------------------ECTTCTTCCCCEEECTTSSEEEEEETTTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-------------------------ECCCCCCCccEEEECCCCCEEEEEECCCC
Confidence            58999999999999999865433221                         11234456889999999665557788899


Q ss_pred             cEEEEeCCCCeeeEeeccCCC-----CeEEEEEcCCCCcEEEEEe------------CCCcEEEEecCCCCCccceEeec
Q 010748          290 QVKIWDVAAGKCNLTLEHHTD-----KVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~  352 (502)
                      .|.+||+.+++.+..+..+..     .+..++|+|++ .+++++.            .++.+.+||..+..... .....
T Consensus        57 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~  134 (337)
T d1pbyb_          57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-AFEAP  134 (337)
T ss_dssp             EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-EEECC
T ss_pred             eEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEEE-ecccc
Confidence            999999999999888865433     34578999999 6666665            45778899998876544 34556


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC---------------
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP---------------  417 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~---------------  417 (502)
                      ..+..++|+|++. ++++++  +.+.+||..+.         .....+..+... ....++|++.               
T Consensus       135 ~~~~~~~~s~dg~-~l~~~~--~~~~~~d~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  201 (337)
T d1pbyb_         135 RQITMLAWARDGS-KLYGLG--RDLHVMDPEAG---------TLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             SSCCCEEECTTSS-CEEEES--SSEEEEETTTT---------EEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred             CCceEEEEcCCCC-EEEEEc--CCcceeeeecC---------cEEEEeecCCcc-ccceecCCcceeeccccccceeeee
Confidence            7788999999887 455554  45778998876         333333322211 1111111110               


Q ss_pred             --------CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          418 --------NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       418 --------~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                              ..+..++.++.+.+|++.++... ......+...+..+.++|++.+ ++++  ++.|++||+.+++.+.+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~i~v~d~~~~~~~~~~~  277 (337)
T d1pbyb_         202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASIKRVP  277 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             eeeeeeccceeeecccCccEEEEEcCCCcEE-EEEecCCCcceEEEEecccceE-EEEc--cccEEEEECCCCcEEEEEc
Confidence                    11112233456899999888743 3344556778899999999984 5543  5789999999999887654


Q ss_pred             c
Q 010748          490 S  490 (502)
Q Consensus       490 ~  490 (502)
                      .
T Consensus       278 ~  278 (337)
T d1pbyb_         278 L  278 (337)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=4.2e-15  Score=140.52  Aligned_cols=243  Identities=11%  Similarity=-0.020  Sum_probs=163.6

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      ++++++++||++++.++.|.|||+.+.+.+..+                          ...|...+.+++|+|+++.++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~--------------------------~~~~~~~p~~l~~spDG~~l~   55 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC--------------------------VMPDKFGPGTAMMAPDNRTAY   55 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE--------------------------ECSSCCSSCEEEECTTSSEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEE--------------------------EcCCCCCcceEEECCCCCEEE
Confidence            456899999999999999999999865333221                          113556788999999977666


Q ss_pred             EEEecCCcEEEEeCCCCeeeEeeccCC------CCeEEEEEcCCCCcEEEEEe------------CCCcEEEEecCCCCC
Q 010748          283 ASASADKQVKIWDVAAGKCNLTLEHHT------DKVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTH  344 (502)
Q Consensus       283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~  344 (502)
                      ++++.++.|++||+.+++.+..+....      ..+..++|+|+| +++++++            .++.+.+|+..+...
T Consensus        56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (346)
T d1jmxb_          56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  134 (346)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence            788889999999999999888775322      245689999999 6666554            467889999887665


Q ss_pred             ccceE--eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC------
Q 010748          345 SGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV------  416 (502)
Q Consensus       345 ~~~~~--~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~------  416 (502)
                      .....  .....+..+.+++++.  +++.  ++.+.+|++.+.         ..+..+..+.. ...+.++|++      
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~  200 (346)
T d1jmxb_         135 AKPVRTFPMPRQVYLMRAADDGS--LYVA--GPDIYKMDVKTG---------KYTVALPLRNW-NRKGYSAPDVLYFWPH  200 (346)
T ss_dssp             BCCSEEEECCSSCCCEEECTTSC--EEEE--SSSEEEECTTTC---------CEEEEECSTTC-CCTTBCCCBCCCCCCC
T ss_pred             eeEEEeeeccCceEEEEecCCCE--EEEe--CCcceEEEccCC---------CEEEEEecCCC-ccceEEeccccEEEEE
Confidence            43332  2344566677777543  3333  356889998775         33333332221 2222233322      


Q ss_pred             -------------------CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748          417 -------------------PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       417 -------------------~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vw  477 (502)
                                         ...++++...+.+.+|++.++... ......+...+.++.+++++.+ ++.+. .+.|++|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~  277 (346)
T d1jmxb_         201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKY  277 (346)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEE
T ss_pred             ecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE-EEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEE
Confidence                               133444455667888999887743 3344456778999999999987 44444 4579999


Q ss_pred             ECCCCccccccc
Q 010748          478 DTLSDAGISNRF  489 (502)
Q Consensus       478 d~~~~~~~~~~~  489 (502)
                      |+.+++.+....
T Consensus       278 d~~~~~~~~~~~  289 (346)
T d1jmxb_         278 DLKQRKLIKAAN  289 (346)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECCCCcEEEEEc
Confidence            999998776543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.61  E-value=2.6e-13  Score=129.97  Aligned_cols=268  Identities=10%  Similarity=-0.009  Sum_probs=166.8

Q ss_pred             ccccccCCCceEEEEEecCCcc-----eeEEEEEecCCCCCCCeeeeeccccCCCc-ceeeeecCCCCCCCCCCEEEEec
Q 010748          143 EDMTINPNDAVIVCARNEDDVS-----HLEVYILEESDGGDPNLYVHHHIIIPAFP-LCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~-----~l~v~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      ..+.|+|+|++|+++.......     .-.|++|+....   .+.  .....+..+ .+....+..+.++++++.+++..
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~---~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~  143 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF---LPI--ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC---cEE--EEEecCCcceeEeccCCCcEEEEeCCCcEEEEE
Confidence            3689999999999986543110     013455554443   111  111111110 11111112223367887766554


Q ss_pred             --CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748          217 --MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       217 --~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw  294 (502)
                        .++.+.+|+......                               ..+.....++.++|++...+++++.|+++.+|
T Consensus       144 ~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~  192 (373)
T d2madh_         144 FAAGPAVGLVVQGGSSD-------------------------------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             EcCCCceEEeeccCCeE-------------------------------EEEeccceeEEEecCCCcEEEEEcCCCeEEEE
Confidence              346788888754211                               13445577899999988788899999999999


Q ss_pred             eCCCCeeeEeeccCC------CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE------------eecCCee
Q 010748          295 DVAAGKCNLTLEHHT------DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------------AVAADVE  356 (502)
Q Consensus       295 d~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------~~~~~v~  356 (502)
                      +...+........+.      .....+.+.+.+  .++..+.++.+.+|+...........            .......
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (373)
T d2madh_         193 DHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             EcCCceeeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcce
Confidence            999887766553322      223344555544  56677788999999987654321110            0112234


Q ss_pred             EEEeCCCCCC---------EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC-EEEEEeCC
Q 010748          357 SLAWDPHAEH---------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTD  426 (502)
Q Consensus       357 ~v~~~~~~~~---------~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~d  426 (502)
                      .+++++++..         .++....++.+.+||+.++         +.+..+. +...+.+++|+|+|.. ++++++.|
T Consensus       271 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~---------~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d  340 (373)
T d2madh_         271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             eeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC---------cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCC
Confidence            4555555442         3345566778999999886         4555443 6677899999999844 45788899


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      +.|++||+.+++  .+..+..+......+++.++
T Consensus       341 ~~v~v~D~~tg~--~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         341 EVLHIYDAGAGD--QDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CeEEEEECCCCC--EEEEECCCCCCCcEEEEecC
Confidence            999999999998  56777766666667766543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=1.1e-13  Score=132.67  Aligned_cols=309  Identities=11%  Similarity=-0.041  Sum_probs=181.6

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec--
Q 010748          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--  216 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~--  216 (502)
                      ......+...|+++.....-........+||+++....   .+....  .....+ .+.|       +|+|++|++.+  
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~---~~~~~~--~~~~~~-~~a~-------spDg~~i~~~~~~   85 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG---VTLGHS--LGAFLS-LAVA-------GHSGSDFALASTS   85 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEE--EECTTC-EEEE-------CTTSSCEEEEEEE
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC---cEEEEE--eCCCCC-cceE-------CCCCCEEEEEccc
Confidence            34556667788888654432222223568999998776   443321  122222 3445       89999998754  


Q ss_pred             --------CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748          217 --------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       217 --------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d  288 (502)
                              .++.|++||..+...+.....-..                    ...........++|+|+++.++++...+
T Consensus        86 ~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~--------------------~~~~~g~~p~~~a~SpDGk~l~va~~~~  145 (368)
T d1mdah_          86 FARSAKGKRTDYVEVFDPVTFLPIADIELPDA--------------------PRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             ETTTTSSSEEEEEEEECTTTCCEEEEEEETTS--------------------CSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             CccccccccCCeEEEEECCCCcEeeeecCCcc--------------------ceecccCCccceEECCCCCEEEEEeCCC
Confidence                    467899999987654332211000                    0001122334689999976555454568


Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE------eecCCeeEEEeCC
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDP  362 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~v~~v~~~~  362 (502)
                      +.|.+||+.+++.+..+..+....    +.|.+...+++.+.||.+.++++..........      .+...+..+.+.+
T Consensus       146 ~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (368)
T d1mdah_         146 SAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             SCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred             CeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc
Confidence            999999999999988886554432    223344677788888998888877654332111      1223344566666


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCCCCCC-CCccc--eEEeccCCCeeEEEEcCCCCCEEEEEeCC--------CcEEE
Q 010748          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDST-SQQSS--FTLHAHDKAVCTISYNPLVPNLLATGSTD--------KMVKL  431 (502)
Q Consensus       363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~--~~~~~h~~~v~~l~~sp~~~~~l~t~s~d--------g~i~v  431 (502)
                      ++.   +.....+.++++++.......... .....  ............++++|++..++++...+        ..|.+
T Consensus       222 ~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v  298 (368)
T d1mdah_         222 PGM---LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TTE---EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             CcE---EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence            532   222335566666665442100000 00000  00000112234578888874444433222        24899


Q ss_pred             EECCCCCeeEEEEecCCCCcEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCcccccccc
Q 010748          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~-ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ||..+++.  +..+. +...+.+++|+|||+. +++++..++.|+|||+.+++.++++-.
T Consensus       299 ~D~~t~~~--~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         299 VTASVGQT--SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EESSSCCE--EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EECCCCcE--eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            99999873  33333 3356889999999964 567777889999999999998877653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=9e-13  Score=125.02  Aligned_cols=271  Identities=10%  Similarity=0.019  Sum_probs=155.1

Q ss_pred             ccccccccCCCceEEEEEecCCcc-----eeEEEEEecCCCCCCCeeeee------ccccCCCcceeeeecCCCCCCCCC
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVS-----HLEVYILEESDGGDPNLYVHH------HIIIPAFPLCMAWLDCPLKDREKG  209 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~-----~l~v~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~s~~~  209 (502)
                      ....++|+|+|++|++++......     .-.|++|+....   .+....      .......|..+.       |++++
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~---~~~~~~~~~~~~~~~~~~~~~~~~-------~s~dg  117 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---LPTADIELPDAPRFLVGTYPWMTS-------LTPDG  117 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---CEEEEEEETTCCCCCBSCCGGGEE-------ECTTS
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC---CEEEEEecCCcceeecCCCCceEE-------EecCC
Confidence            344689999999998765321000     014666665544   222111      111122233333       38999


Q ss_pred             CEEEEec--CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          210 NFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       210 ~~la~g~--~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +++++++  .+..+.+|+..+..........+                 .   ....-......+.+++++..+++....
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~---~~~~~~~~~~~~~~~~dg~~~~v~~~~  177 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----------------C---YHIFPTAPDTFFMHCRDGSLAKVAFGT  177 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------------E---EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             CeeEEecCCCCceeeeeecCCCcEeeEEecCC-----------------c---ceEeecCCcceEEEcCCCCEEEEEecC
Confidence            9888765  45688999987644322111000                 0   000011223344555554433333344


Q ss_pred             CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE------------eecCCe
Q 010748          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------------AVAADV  355 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------~~~~~v  355 (502)
                      ++.+.+++......     .+...+....+.+.+ ..++.++.++.+.+|++..........            ......
T Consensus       178 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  251 (355)
T d2bbkh_         178 EGTPEITHTEVFHP-----EDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW  251 (355)
T ss_dssp             SSCCEEEECCCCSC-----TTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred             CCeEEEEecccccc-----eecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccce
Confidence            44455554433321     234445566777777 678888999999999998765432111            112334


Q ss_pred             eEEEeCCCCCCEEEEEeCC---------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC-EEEEEeC
Q 010748          356 ESLAWDPHAEHSFVVSLED---------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGST  425 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~d---------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~  425 (502)
                      ..+++++++..+++.....         ..|.+||..+.         +.+..+. +...+.+++|+|++.. ++++++.
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---------~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~  321 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFE-MGHEIDSINVSQDEKPLLYALSTG  321 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEE-EEEEECEEEECCSSSCEEEEEETT
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC---------cEEEEec-CCCCEEEEEEcCCCCeEEEEEECC
Confidence            5688888877444443322         36999999986         4555554 3355889999999854 4567778


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcC
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE  459 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp  459 (502)
                      |+.|++||+.+++  .+.++..+......+.+.+
T Consensus       322 d~~i~v~D~~tg~--~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         322 DKTLYIHDAESGE--ELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             TTEEEEEETTTCC--EEEEECCCCSSCCEEECCC
T ss_pred             CCEEEEEECCCCC--EEEEEeCcCCCccEEEeCC
Confidence            9999999999998  4556655544444444443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=1.5e-11  Score=121.76  Aligned_cols=144  Identities=10%  Similarity=0.096  Sum_probs=90.6

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEEecC----
Q 010748          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVGSM----  217 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~la~g~~----  217 (502)
                      ..+.|.|++.++..  .++     .+++++...+....+...+... ...-..++.|       ||||++||.++.    
T Consensus        20 ~~~~W~~d~~~~~~--~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~-------SpDg~~i~~~~~~~~~   85 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QEN-----NILVFNAEYGNSSVFLENSTFDEFGHSINDYSI-------SPDGQFILLEYNYVKQ   85 (470)
T ss_dssp             CCCEECSSSEEEEE--SSS-----CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEE-------CTTSSEEEEEEEEEEC
T ss_pred             cCCEeCCCCEEEEE--cCC-----cEEEEECCCCCEEEEEchhhhhhccCccceeEE-------CCCCCEEEEEECCcce
Confidence            35788899987753  233     4556665554222222222111 0111233333       899999998743    


Q ss_pred             -----CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEE
Q 010748          218 -----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       218 -----dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~  292 (502)
                           ++.+.|||+.++..                            ..+..|...+..+.|+|+| +.||.. .++.+.
T Consensus        86 ~r~s~~~~~~l~d~~~~~~----------------------------~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~  135 (470)
T d2bgra1          86 WRHSYTASYDIYDLNKRQL----------------------------ITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIY  135 (470)
T ss_dssp             SSSCEEEEEEEEETTTTEE----------------------------CCSSCCCTTEEEEEECSST-TCEEEE-ETTEEE
T ss_pred             eeeccCceEEEEECCCCcc----------------------------cccccCCccccccccccCc-ceeeEe-ecccce
Confidence                 56788999975321                            1234678889999999995 467664 567899


Q ss_pred             EEeCCCCeeeEeecc------------------CCCCeEEEEEcCCCCcEEEEEeCC
Q 010748          293 IWDVAAGKCNLTLEH------------------HTDKVQAVAWNHHSPQILLSGSFD  331 (502)
Q Consensus       293 vwd~~~~~~~~~~~~------------------h~~~v~~l~~~~~~~~~l~s~s~d  331 (502)
                      +|++.+++..+....                  +.+....+.|+|+| +.|+....|
T Consensus       136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d  191 (470)
T d2bgra1         136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFN  191 (470)
T ss_dssp             EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEE
T ss_pred             EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEec
Confidence            999998876554322                  12334668899999 677776544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.36  E-value=1.9e-11  Score=117.20  Aligned_cols=258  Identities=7%  Similarity=0.020  Sum_probs=162.3

Q ss_pred             CCCE-EEEecCCCcEEEeeCCCCCCcCcceecCCcchh------hhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748          208 KGNF-MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       208 ~~~~-la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      |+-| +++|+.+|.|+||++.+++.+..+.++......      ..++....   .........|.-.+....++|+|+.
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~---~~~~~~gd~hhP~~s~t~gtpDGr~   85 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGG---DQQYLNGDCHHPHISMTDGRYDGKY   85 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCS---SSCCSCCCBCCCEEEEETTEEEEEE
T ss_pred             CCEEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEec---ccccccCcccCCCcceecccCCCCE
Confidence            3344 677889999999999988776655554321110      00000000   0011122345556677778899776


Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcE------------------EEEecCC
Q 010748          281 ILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSV------------------VMKDARI  341 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i------------------~iwd~~~  341 (502)
                      ++++...+++|.++|+.++++...+. .+...+..++|+|++....+++.....+                  ..+|..+
T Consensus        86 lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t  165 (441)
T d1qnia2          86 LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET  165 (441)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred             EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence            66777788999999999999887664 3567899999999984433443333333                  4466666


Q ss_pred             CCCccceEeecCCeeEEEeCCCCCCEEEEEeCC----------------------------------------CcEEEEE
Q 010748          342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLED----------------------------------------GTIKGFD  381 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d----------------------------------------g~v~i~d  381 (502)
                      ..... .......+..+.|+|+++..++++...                                        +.+.+++
T Consensus       166 ~~v~~-qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~  244 (441)
T d1qnia2         166 MDVAW-QVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG  244 (441)
T ss_dssp             CSEEE-EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             ceeeE-EEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEc
Confidence            54433 344566788999999987544444322                                        1222222


Q ss_pred             CCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC---------eeEEEEecCCCCcE
Q 010748          382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---------PSCIASRNPKAGAV  452 (502)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~---------~~~~~~~~~~~~~v  452 (502)
                      ...         ...+..+..+.. ...+.++|+|..+++++..+++|.|||+.+..         ..++.......-..
T Consensus       245 ~~~---------~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgp  314 (441)
T d1qnia2         245 RGE---------SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGP  314 (441)
T ss_dssp             SSS---------CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCE
T ss_pred             ccC---------CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCc
Confidence            221         244555555544 57899999995566777889999999986521         01222222222234


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      ...+|.++|. .+.+...|..|..|++.
T Consensus       315 lh~~fd~~g~-~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         315 LHTTFDGRGN-AYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEEECSSSE-EEEEETTTTEEEEEEHH
T ss_pred             ccceecCCce-EEEcccccceEEEeccc
Confidence            6678999996 68889999999999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.23  E-value=1.9e-10  Score=109.64  Aligned_cols=251  Identities=10%  Similarity=-0.041  Sum_probs=145.6

Q ss_pred             ccccccCCCceEEEEEecCCc-----ceeEEEEEecCCCCCCCee-eee--ccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748          143 EDMTINPNDAVIVCARNEDDV-----SHLEVYILEESDGGDPNLY-VHH--HIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~-----~~l~v~~~~~~~~~~~~l~-~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~la~  214 (502)
                      ..+.|+|+|+.|++++.....     ..-.|++|+.......... .+.  .......|..++|       +|+|++|++
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~-------SpDGk~l~v  140 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN-------CASSACLLF  140 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE-------CTTSSCEEE
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE-------CCCCCEEEE
Confidence            358899999999987642110     1125777776543110000 110  1111223344444       899999988


Q ss_pred             ec-CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748          215 GS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       215 g~-~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v  293 (502)
                      +. .++.|.+||+.+.......                           ..+..    ..+.+.+...+++.+.||++.+
T Consensus       141 a~~~~~~v~~~d~~~~~~~~~~---------------------------~~~~~----~~~~~~~~~~~v~~~~Dg~~~~  189 (368)
T d1mdah_         141 FLFGSSAAAGLSVPGASDDQLT---------------------------KSASC----FHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             EECSSSCEEEEEETTTEEEEEE---------------------------ECSSC----CCCEEEETTEEECCCCTTSCEE
T ss_pred             EeCCCCeEEEEECCCCcEeEEe---------------------------eccCc----ceEccCCCceEEEEcCCCCEEE
Confidence            86 4689999999764332211                           01111    1123333456777788888888


Q ss_pred             EeCCCCeeeEe------eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce------------EeecCCe
Q 010748          294 WDVAAGKCNLT------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK------------WAVAADV  355 (502)
Q Consensus       294 wd~~~~~~~~~------~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------------~~~~~~v  355 (502)
                      |++........      +..+...+..+.+.+++ ..+.  ...+.+.++++.........            .......
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  266 (368)
T d1mdah_         190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG-MLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT-EEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred             EEecCCceeeeeeecccccccccceeecccccCc-EEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCc
Confidence            88765543222      23344455667777776 4443  33455666666544322110            0112334


Q ss_pred             eEEEeCCCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC-EEEEEeCC
Q 010748          356 ESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTD  426 (502)
Q Consensus       356 ~~v~~~~~~~~~~~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~d  426 (502)
                      ..+++++++..++++...+        ..|.+||..++         +.+..+. +...+.+++|+|++.. +++++..+
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~---------~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------CEEECCE-EEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC---------cEeEEec-CCCceeEEEECCCCCEEEEEEeCCC
Confidence            5678888876544443322        25889999887         4444443 3356889999999854 45677789


Q ss_pred             CcEEEEECCCCCeeEEEEec
Q 010748          427 KMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~  446 (502)
                      +.|++||..+++  .+..+.
T Consensus       337 ~~v~v~D~~tgk--~~~~i~  354 (368)
T d1mdah_         337 EVLDIYDAASDQ--DQSSVE  354 (368)
T ss_dssp             TEEEEEESSSCE--EEEECC
T ss_pred             CeEEEEECCCCC--EEEEEE
Confidence            999999999998  344444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.21  E-value=8.7e-09  Score=97.72  Aligned_cols=166  Identities=11%  Similarity=0.101  Sum_probs=105.6

Q ss_pred             CCCeEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCccceE-----eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEEC
Q 010748          309 TDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW-----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~  382 (502)
                      ...+.++.|+|++ ++++++. ....|.+|+...........     ........++|+|+++.++++.-.++.|.+|++
T Consensus       144 ~~h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         144 NTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            3457899999999 6555554 45678888766543322111     124568899999998866667777899999998


Q ss_pred             CCCCCCCCCCCCccceEEe-----------------ccCCCeeEEEEcCCCCCEEEEEe-CCC-----cEEEEECCCCCe
Q 010748          383 RTAKSDPDSTSQQSSFTLH-----------------AHDKAVCTISYNPLVPNLLATGS-TDK-----MVKLWDLSNNQP  439 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~-----------------~h~~~v~~l~~sp~~~~~l~t~s-~dg-----~i~vwd~~~~~~  439 (502)
                      .....       ..+....                 .+......+.++|+| ++|+++. .+.     .|..|++.....
T Consensus       223 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         223 DPATH-------MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             CTTTC-------CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             cCCCc-------eEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCc
Confidence            76521       1111111                 112235678999998 6665553 222     377777765321


Q ss_pred             e----EEEEecCCCCcEEEEEEcC-CCCcEEEEEeCCCcEEEEECCCCc
Q 010748          440 S----CIASRNPKAGAVFSVAFSE-DSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       440 ~----~~~~~~~~~~~v~~~~~sp-d~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                      .    .+..........++++++| +|++|+++...++.|.||++....
T Consensus       295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            1    1222222334567799998 789877777788999999886543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.15  E-value=3.8e-11  Score=115.05  Aligned_cols=245  Identities=11%  Similarity=0.097  Sum_probs=153.5

Q ss_pred             CCCCCEEEEe-cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          206 REKGNFMAVG-SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g-~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|||++|++. ..++.|.++|+++++.....                          ...+...+..++|+|+++...++
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii--------------------------~iP~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKIT--------------------------HIPNVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEE--------------------------ECTTCCCEEEEEECCSSBCCEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEE--------------------------ecCCCCCccceEEeccCCEEEEE
Confidence            6899998665 57789999999875432211                          11355678999999986543344


Q ss_pred             EecCCcE------------------EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--------------
Q 010748          285 ASADKQV------------------KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--------------  332 (502)
Q Consensus       285 gs~dg~v------------------~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--------------  332 (502)
                      +.....+                  ..+|..+.+...++.. ......+.|+|+| .++++++.+.              
T Consensus       134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~  211 (441)
T d1qnia2         134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDR  211 (441)
T ss_dssp             EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSB
T ss_pred             eccCCcccccCcccccccccccceEEeecCccceeeEEEec-CCCccceEECCCC-CEEEEEecCCCceEEEeccCcceE
Confidence            4333333                  4588888877777754 3457889999999 6666665442              


Q ss_pred             ---------------------------cEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          333 ---------------------------SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       333 ---------------------------~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~  385 (502)
                                                 .+.+++....... ...........+.++|+|.++++++..+++|.+||+.+.
T Consensus       212 d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~-~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         212 DWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT-RYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             CEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE-EEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             EEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE-EEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence                                       2233332222222 233445567789999999877788899999999998764


Q ss_pred             CCCCCCCCCccceEEecc---CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC-------CCee-EEEEe-----cCCC
Q 010748          386 KSDPDSTSQQSSFTLHAH---DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-------NQPS-CIASR-----NPKA  449 (502)
Q Consensus       386 ~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~-------~~~~-~~~~~-----~~~~  449 (502)
                      ....... ......+.++   .-.....+|.+.| +.+.+...|.+|..|++..       .+.. .+..+     .+|.
T Consensus       291 ~~~~~~~-~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~  368 (441)
T d1qnia2         291 DDLFEDK-IELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN  368 (441)
T ss_dssp             HHHTTTS-SCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred             hhHhhcc-CCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence            2100000 0111112222   1234556899987 7788888999999999742       1111 12222     3565


Q ss_pred             CcEEEEEEcCCCCcEEEEE---eCCC----------cEEEEECCCC
Q 010748          450 GAVFSVAFSEDSPFVLAIG---GSKG----------KLEIWDTLSD  482 (502)
Q Consensus       450 ~~v~~~~~spd~~~ll~sg---~~dg----------~i~vwd~~~~  482 (502)
                      ..+.+.+++|||+| |+++   +.|.          +-.+.|+...
T Consensus       369 ~~~~~~t~~pdGk~-l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~  413 (441)
T d1qnia2         369 HASLTESRDADGKW-LVVLSKFSKDRFLPVGPLHPENDQLIDISGE  413 (441)
T ss_dssp             EETTTTSTTCCCCE-EEEEESCCGGGSCCCSSSCCEEEEEEECSSS
T ss_pred             ccccccccCCCCcE-EEecCccccccCcCCCCCCCccceeEEecCC
Confidence            56667789999997 7778   4343          3567888643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=7e-08  Score=86.78  Aligned_cols=242  Identities=12%  Similarity=0.051  Sum_probs=141.9

Q ss_pred             eeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-C--cEEEeeCCCCCCcCcceecCCc
Q 010748          165 HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-P--AIEIWDLDVIDEVQPHVILGGI  241 (502)
Q Consensus       165 ~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d-g--~I~iwdl~~~~~~~~~~~l~~~  241 (502)
                      ..+||+.+........+..+...     ...-+|       ||||+.||..... +  .+.+.+.....           
T Consensus        18 ~~~l~i~d~dG~~~~~l~~~~~~-----~~sP~w-------SPDGk~IAf~~~~~~~~~~~~~~~~~~~-----------   74 (269)
T d2hqsa1          18 PYELRVSDYDGYNQFVVHRSPQP-----LMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGA-----------   74 (269)
T ss_dssp             CEEEEEEETTSCSCEEEEEESSC-----EEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCC-----------
T ss_pred             eEEEEEEcCCCCCcEEEecCCCc-----eeeeEE-------CCCCCEEEEEEeeccCcceeeeecccCc-----------
Confidence            45788887665422222222211     123344       9999999976543 2  34444444211           


Q ss_pred             chhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe--CCCCeeeEeeccCCCCeEEEEEcC
Q 010748          242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD--VAAGKCNLTLEHHTDKVQAVAWNH  319 (502)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd--~~~~~~~~~~~~h~~~v~~l~~~~  319 (502)
                                       ...+..+........|+|++..+++.....+...++.  ....... .............+++
T Consensus        75 -----------------~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  136 (269)
T d2hqsa1          75 -----------------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFP  136 (269)
T ss_dssp             -----------------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECT
T ss_pred             -----------------eeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeecccccccccccc
Confidence                             1122346677889999999765555554444433333  2222222 2233444555667788


Q ss_pred             CCCcEEEEEeCCCcEEEE--ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc
Q 010748          320 HSPQILLSGSFDRSVVMK--DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       320 ~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  397 (502)
                      .+...+++...+|...+|  ++....... ............|+|++..++++....+...+|.....         ...
T Consensus       137 ~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~---------~~~  206 (269)
T d2hqsa1         137 DSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA---------TGG  206 (269)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT---------TCC
T ss_pred             ccccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEEEeecCCceeeeEeecc---------ccc
Confidence            775667777667755554  444433222 22334556778899998877777777777666655543         223


Q ss_pred             eEEeccCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748          398 FTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       398 ~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      .....+........|+|+|..++++...  ...|+++++..+.   ...+....+.+...+|+|-
T Consensus       207 ~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~---~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         207 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---EEECCCSSSEEEEEEECCC
T ss_pred             ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEEeCCCCcEEeEEeCCC
Confidence            3444566677888999999444444433  3458899998776   3345555677888999983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=2.2e-08  Score=90.04  Aligned_cols=196  Identities=12%  Similarity=0.123  Sum_probs=131.0

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      ....|++.++ ++++++....+.+++++-.+...+..+.. .....++++.+++ +++++-.....+..++.........
T Consensus        58 ~p~gvav~~~-g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~  134 (260)
T d1rwia_          58 QPQGLAVDGA-GTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVL  134 (260)
T ss_dssp             SCCCEEECTT-CCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEEC
T ss_pred             CceEEEEcCC-CCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccc-eeEeeccccccccccccccceeeee
Confidence            3578899998 55777777777777776555555444332 3567899999988 7777766677777777665443222


Q ss_pred             eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      ..........+++++++. ++++....+.|..++....         .........-.....|++.+++ +++++....+
T Consensus       135 ~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~  203 (260)
T d1rwia_         135 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESN---------NQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTN  203 (260)
T ss_dssp             CCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTC---------CEEECCCSSCCSEEEEEECTTC-CEEEEETTTT
T ss_pred             eecccCCcceeeecCCCC-Eeeeccccccccccccccc---------eeeeeeccccCCCccceeeeee-eeeeeecCCC
Confidence            222234567899999765 7777788889999987754         1111112344567889999987 8888888888


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                      .|..++...... .+ ...........|+++++|. ++++-..+++|+.++..
T Consensus       204 ~i~~~~~~~~~~-~~-~~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         204 QVVKLLAGSTTS-TV-LPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEEEECTTCSCC-EE-CCCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEECCC
T ss_pred             EEEEEeCCCCeE-EE-EccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEeCC
Confidence            898888765442 12 2222335678999999997 67766666766655543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.1e-07  Score=85.50  Aligned_cols=207  Identities=10%  Similarity=0.057  Sum_probs=124.8

Q ss_pred             CcccceeeEEeccCCCcEEEEE-ecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748          264 SHTDSVLGLAWNKEFRNILASA-SADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sg-s~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~  340 (502)
                      .+...+...+|||+|. .||-. ...+  .+.+.+...+.. ..+..+........|+|++..+++.....+...++...
T Consensus        36 ~~~~~~~sP~wSPDGk-~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~  113 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  113 (269)
T ss_dssp             EESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cCCCceeeeEECCCCC-EEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecc
Confidence            3556788999999965 55544 3333  366667665554 34445778889999999995555555555554444433


Q ss_pred             CCCCc-cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748          341 ISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       341 ~~~~~-~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      ..... ..............+++.+...+++...+|...+|.....        ......+..+........|+|++..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~~  185 (269)
T d2hqsa1         114 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN--------GGAPQRITWEGSQNQDADVSSDGKFM  185 (269)
T ss_dssp             TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------SSCCEECCCSSSEEEEEEECTTSSEE
T ss_pred             cccccceeeeeccccccccccccccccceecccccCCceEeeeecc--------cccceeeeccccccccccccccccee
Confidence            32221 1122233444556677777767777777775544444332        13344445566677888999998444


Q ss_pred             EEEEeCCCcEEEE--ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCcc
Q 010748          420 LATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAG  484 (502)
Q Consensus       420 l~t~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d--g~i~vwd~~~~~~  484 (502)
                      +.+....+...+|  +...+.  .  ....+.+......|+|||++++.++...  ..|++|++..+..
T Consensus       186 ~~~~~~~~~~~i~~~~~~~~~--~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         186 VMVSSNGGQQHIAKQDLATGG--V--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTCC--E--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             EEEeecCCceeeeEeeccccc--c--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            4445555555554  444443  2  2333455677889999999765555433  3688999976654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.99  E-value=9.1e-09  Score=101.14  Aligned_cols=153  Identities=13%  Similarity=0.219  Sum_probs=105.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      ..+.|       .+++.++...  ++.|.+||+.++....   ++                   ....+..|...|.++.
T Consensus        20 ~~~~W-------~~d~~~~~~~--~~~~~~~~~~t~~~~~---~~-------------------~~~~~~~~~~~i~~~~   68 (470)
T d2bgra1          20 YSLRW-------ISDHEYLYKQ--ENNILVFNAEYGNSSV---FL-------------------ENSTFDEFGHSINDYS   68 (470)
T ss_dssp             CCCEE-------CSSSEEEEES--SSCEEEEETTTCCEEE---EE-------------------CTTTTTTSSSCCCEEE
T ss_pred             cCCEe-------CCCCEEEEEc--CCcEEEEECCCCCEEE---EE-------------------chhhhhhccCccceeE
Confidence            45667       4788887754  6889999998754321   11                   1123456778899999


Q ss_pred             eccCCCcEEEEEec---------CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748          274 WNKEFRNILASASA---------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       274 ~~~~~~~~l~sgs~---------dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  344 (502)
                      |+|++ .+|+.++.         ++.+.|||+.+++. ..+..|...+..+.|+|+| +.++.. .++.+.+|+..++..
T Consensus        69 ~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~  144 (470)
T d2bgra1          69 ISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPS  144 (470)
T ss_dssp             ECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCC
T ss_pred             ECCCC-CEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCc-ceeeEe-ecccceEEECCCCce
Confidence            99995 47776643         56789999998874 5577789999999999999 666664 567899999887765


Q ss_pred             ccceEe------------------ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEE
Q 010748          345 SGFKWA------------------VAADVESLAWDPHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       345 ~~~~~~------------------~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d  381 (502)
                      ......                  ..+....+.|+|+|..+++....+..+..|.
T Consensus       145 ~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            432211                  1123466889999875444444444444443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.98  E-value=1.7e-07  Score=86.10  Aligned_cols=220  Identities=13%  Similarity=0.098  Sum_probs=146.7

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+|+++++...++.|..|+.+...  .                           .+......+.+++|.+++ +++++.
T Consensus        36 ~pdG~l~vt~~~~~~I~~i~p~g~~--~---------------------------~~~~~~~~~~gla~~~dG-~l~v~~   85 (302)
T d2p4oa1          36 APDGTIFVTNHEVGEIVSITPDGNQ--Q---------------------------IHATVEGKVSGLAFTSNG-DLVATG   85 (302)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCCE--E---------------------------EEEECSSEEEEEEECTTS-CEEEEE
T ss_pred             CCCCCEEEEeCCCCEEEEEeCCCCE--E---------------------------EEEcCCCCcceEEEcCCC-CeEEEe
Confidence            7999999999999998888754210  0                           112344678999999995 588888


Q ss_pred             ecCCcEEEEeCCCCee-eEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE----------eec
Q 010748          286 SADKQVKIWDVAAGKC-NLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----------AVA  352 (502)
Q Consensus       286 s~dg~v~vwd~~~~~~-~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~  352 (502)
                      ..++.+.+|+...... ...+  .........+.+.+++ +++++.+..+.+..++...........          ...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1          86 WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             cCCceEEEEEecccccceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence            8888888887654321 1111  2245568899999998 888888888888888877654222111          111


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .....+.+..  ..++++.+..+.|+.++......       ...............+++.++| +++++...++.|..+
T Consensus       165 ~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i  234 (302)
T d2p4oa1         165 PAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDK-------PGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRI  234 (302)
T ss_dssp             CSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSC-------BCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCCEEEE
T ss_pred             cccccccccC--CceeeecCCCCeEEecccccccc-------ccccccccCCCCCcceEECCCC-CEEEEEcCCCcEEEE
Confidence            2345566654  45777788889999998876521       1111222234456789999998 788888888999999


Q ss_pred             ECCCCCeeEEEEecCCCCcEEEEEE---cCCCCcEEEE
Q 010748          433 DLSNNQPSCIASRNPKAGAVFSVAF---SEDSPFVLAI  467 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~---spd~~~ll~s  467 (502)
                      +.... ...+..........++++|   .+|++.|+++
T Consensus       235 ~p~G~-~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         235 APDRS-TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             CTTCC-EEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             CCCCC-EEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            87643 2334444444456899999   6788754444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.95  E-value=3e-07  Score=84.83  Aligned_cols=204  Identities=8%  Similarity=0.044  Sum_probs=125.8

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCC----CeEEEEEcCCCCcEEEEEeC-------------
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD----KVQAVAWNHHSPQILLSGSF-------------  330 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~l~s~s~-------------  330 (502)
                      .-..|+|.+++ +.|+++...+.|...+...+..........+    ....+.+.++| ++.++-..             
T Consensus        72 ~P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          72 IPAGCQCDRDA-NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CEEEEEECSSS-SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTS
T ss_pred             cceeEEEeCCC-CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceec
Confidence            35789999994 4666777667788899765543222111111    35778999998 66665422             


Q ss_pred             --CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC----CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-c
Q 010748          331 --DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE----HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-H  403 (502)
Q Consensus       331 --dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~----~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-h  403 (502)
                        .|.|..++..  .........-...+.++|+|++.    .++++-+..+.|..|++.......   .......+.. +
T Consensus       150 ~~~G~v~~~~~d--g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~---~~~~~~~~~~~~  224 (314)
T d1pjxa_         150 EKFGSIYCFTTD--GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE---NKKVWGHIPGTH  224 (314)
T ss_dssp             SSCEEEEEECTT--SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE---EEEEEEECCCCS
T ss_pred             cCCceEEEEeec--CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccc---eeeEEEEccccc
Confidence              1233333332  22222223334456788988653    245555778889999876431000   0000111111 1


Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       404 ~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                      ....-.+++..+| ++.++....+.|.+||...++...  .+.......++++|.|+++.|+++.+.+|.|...++..
T Consensus       225 ~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~--~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         225 EGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKM--RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSE--EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEE--EEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            2335679999988 788887788999999988776433  23333456889999999976788888888888888643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.94  E-value=1.1e-07  Score=87.50  Aligned_cols=231  Identities=10%  Similarity=0.095  Sum_probs=151.2

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      .++.+++.|+|+++++....+     +||.++....    ...+.  ..+..|.++++       +++|++++++..++.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~-----~I~~i~p~g~----~~~~~--~~~~~~~gla~-------~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVG-----EIVSITPDGN----QQIHA--TVEGKVSGLAF-------TSNGDLVATGWNADS   90 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTT-----EEEEECTTCC----EEEEE--ECSSEEEEEEE-------CTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCCCEEEEeCCCC-----EEEEEeCCCC----EEEEE--cCCCCcceEEE-------cCCCCeEEEecCCce
Confidence            467899999999998887776     8899886542    33332  24455667766       789999999988899


Q ss_pred             EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~  300 (502)
                      +.+|++........                        .............+.+.++ ++++++.+..+.+..++...+.
T Consensus        91 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          91 IPVVSLVKSDGTVE------------------------TLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             CEEEEEECTTSCEE------------------------EEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEeccccccee------------------------eccccCCccccceeEEccC-CCEEeeccccccceeeeccCCc
Confidence            98888754221110                        0011123456789999998 5688888888999999988765


Q ss_pred             eeEeec----------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc--eEeecCCeeEEEeCCCCCCEE
Q 010748          301 CNLTLE----------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       301 ~~~~~~----------~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~~  368 (502)
                      ......          .....+..+.+..  ..++++.+..+.|..++.........  ..........+++++++. ++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~  222 (302)
T d2p4oa1         146 GSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LY  222 (302)
T ss_dssp             EEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EE
T ss_pred             ceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC-EE
Confidence            332211          1123455666654  35777888889999998876543321  223345567899999875 77


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE---cCCCCCEEEEEeCC
Q 010748          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY---NPLVPNLLATGSTD  426 (502)
Q Consensus       369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---sp~~~~~l~t~s~d  426 (502)
                      ++...++.|..++....        ...+......-...++++|   ++++ +.|+.++..
T Consensus       223 va~~~~~~V~~i~p~G~--------~~~~~~~~~~~~~pt~vafg~~~~D~-~~Lyvtt~~  274 (302)
T d2p4oa1         223 GATHIYNSVVRIAPDRS--------TTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTNG  274 (302)
T ss_dssp             EECBTTCCEEEECTTCC--------EEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEECT
T ss_pred             EEEcCCCcEEEECCCCC--------EEEEEecCCCCCCceEEEEcCCCCCC-CEEEEECCC
Confidence            77778888999876532        1122223334456789999   5565 555554443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=1.8e-07  Score=83.85  Aligned_cols=236  Identities=10%  Similarity=0.033  Sum_probs=143.5

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010748          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE  222 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~  222 (502)
                      ..+++.++|++.++.....    -++..+.....   ...... ..-...|..+++       +++++++++....+.|+
T Consensus        17 ~~vavd~dG~i~v~~~~~~----~~i~~~~~~~~---~~~~~~-~~~~~~p~gvav-------~~~g~i~v~d~~~~~i~   81 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMY----GRVVKLATGST---GTTVLP-FNGLYQPQGLAV-------DGAGTVYVTDFNNRVVT   81 (260)
T ss_dssp             EEEEECTTCCEEEEECSSS----CEEEEEC-------CEEECC-CCSCCSCCCEEE-------CTTCCEEEEETTTEEEE
T ss_pred             CEEEEcCCCCEEEEEcCCC----CEEEEEcCCCc---eEEEec-cCCccCceEEEE-------cCCCCEEEeeeeeceee
Confidence            5789999999777654332    15555554432   111110 011123444444       67898888887777777


Q ss_pred             EeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeee
Q 010748          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  302 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~  302 (502)
                      +++-.......                           . ........++++.++ ++++++-.....+.+++.......
T Consensus        82 ~~~~~~~~~~~---------------------------~-~~~~~~p~~iavd~~-g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          82 LAAGSNNQTVL---------------------------P-FDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             ECTTCSCCEEC---------------------------C-CCSCCSEEEEEECTT-CCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             eeeeccceeee---------------------------e-eeeeeeccccccccc-ceeEeeccccccccccccccceee
Confidence            76543221111                           0 112345688999998 457766666677888876554332


Q ss_pred             EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEEC
Q 010748          303 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       303 ~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~  382 (502)
                      .....-.....++++.+++ +++++...++.|..++...................+++++++. ++++....+.|..++.
T Consensus       133 ~~~~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         133 VLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             ECCCCSCCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECT
T ss_pred             eeeecccCCcceeeecCCC-CEeeeccccccccccccccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeC
Confidence            2222223456789999988 7888888888999999876543332223345578899999764 6777777888888876


Q ss_pred             CCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748          383 RTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      ...          ....+ ...-.....|++++++ .++++-..+++|+.++..
T Consensus       211 ~~~----------~~~~~~~~~~~~P~~i~~d~~g-~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         211 GST----------TSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TCS----------CCEECCCCSCCCEEEEEECTTC-CEEEEEGGGTEEEEECCC
T ss_pred             CCC----------eEEEEccCCCCCeEEEEEeCCC-CEEEEECCCCEEEEEeCC
Confidence            543          11111 1222456889999987 777776667777766543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=4.7e-07  Score=81.94  Aligned_cols=238  Identities=14%  Similarity=0.142  Sum_probs=151.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE-
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS-  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s-  284 (502)
                      +++|+++++-.....|++||.+. ..+......+                     ...+....-..+++.++...++++ 
T Consensus        31 d~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~---------------------~~~~~~~~p~~~~~~~~~~~~~~~~   88 (279)
T d1q7fa_          31 NAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG---------------------KRDSQLLYPNRVAVVRNSGDIIVTE   88 (279)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS---------------------SSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEECCCCEEEEEeCCC-CEEEEecccC---------------------CCcccccccccccccccccccceec
Confidence            68899888877788999998752 2111110000                     001122234455655553444443 


Q ss_pred             EecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---ecCCeeEEEe
Q 010748          285 ASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLAW  360 (502)
Q Consensus       285 gs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~v~~  360 (502)
                      .+.++.|.+++. .++....+. ........+++.+++ .++++....+.+.+++..... .. .+.   .......+++
T Consensus        89 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~~-~~-~~g~~~~~~~~~~i~~  164 (279)
T d1q7fa_          89 RSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNV-LH-KFGCSKHLEFPNGVVV  164 (279)
T ss_dssp             CGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE-EE-EEECTTTCSSEEEEEE
T ss_pred             cCCccccccccc-cccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccCCce-ee-cccccccccccceeee
Confidence            345567888875 566666663 345667889999988 777777777888888765321 11 221   2345678888


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe--ccCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECCCC
Q 010748          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSNN  437 (502)
Q Consensus       361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~~~  437 (502)
                      .+++. ++++....+.|++|+...          ..+..+.  ++.....+|++.+++ +++++-+. ++.|.+|+. ++
T Consensus       165 d~~g~-i~v~d~~~~~V~~~d~~G----------~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~-~G  231 (279)
T d1q7fa_         165 NDKQE-IFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ-DG  231 (279)
T ss_dssp             CSSSE-EEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT-TS
T ss_pred             cccee-EEeeeccccceeeeecCC----------ceeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECC-CC
Confidence            88754 777778889999999753          3444442  234557899999998 77776544 456999985 45


Q ss_pred             CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748          438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~  484 (502)
                      +................+++.|+|. +++ +..+.+|++|.......
T Consensus       232 ~~~~~~~~~~~~~~p~~vav~~dG~-l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         232 QLISALESKVKHAQCFDVALMDDGS-VVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTE-EEE-EETTTEEEEEECSCCCC
T ss_pred             CEEEEEeCCCCCCCEeEEEEeCCCc-EEE-EeCCCeEEEEEeeeecC
Confidence            5333333344445688999999996 454 45788999999876543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.87  E-value=4.5e-07  Score=83.61  Aligned_cols=249  Identities=13%  Similarity=0.147  Sum_probs=149.9

Q ss_pred             ccccccccCCCceEEEEEecC--CcceeEEEEEecCCCCCCCeeeeec---cccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748          141 DLEDMTINPNDAVIVCARNED--DVSHLEVYILEESDGGDPNLYVHHH---IIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~--~~~~l~v~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~la~g  215 (502)
                      ..+.++|.|+|+++++.....  +...-+|+.++....   .....+.   ......|..+.+       .++++.|+++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~---~~~~~~~~~~~~~~g~P~Gl~~-------~~dg~~l~va   88 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG---KKTVICKPEVNGYGGIPAGCQC-------DRDANQLFVA   88 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC---CEEEEECCEETTEECCEEEEEE-------CSSSSEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCC---cEEEEECCccccCCCcceeEEE-------eCCCCEEEEE
Confidence            346678999999888753221  001126888886654   3222221   112234555554       7889888888


Q ss_pred             cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc-ccceeeEEeccCCCcEEEEEec-------
Q 010748          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASA-------  287 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~sgs~-------  287 (502)
                      .....|..++.+.......                        .....+. -...+.+++.++| ++.++-..       
T Consensus        89 d~~~~i~~~~~~g~~~~~~------------------------~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~  143 (314)
T d1pjxa_          89 DMRLGLLVVQTDGTFEEIA------------------------KKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPAD  143 (314)
T ss_dssp             ETTTEEEEEETTSCEEECC------------------------SBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSC
T ss_pred             ECCCeEEEEeCCCcEEEEE------------------------eccccccccCCCcEEEECCCC-CEEEecCccCccccc
Confidence            7777788888764211100                        0000011 1235778999985 45555322       


Q ss_pred             --------CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCC----cEEEEEeCCCcEEEEecCCCCCccce--E-ee-
Q 010748          288 --------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP----QILLSGSFDRSVVMKDARISTHSGFK--W-AV-  351 (502)
Q Consensus       288 --------dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~--~-~~-  351 (502)
                              .|.|..++. .++...... .-...+.++|+|++.    .++++-+..+.|..|++.........  + .. 
T Consensus       144 ~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~  221 (314)
T d1pjxa_         144 YTRSMQEKFGSIYCFTT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             CCBTTSSSCEEEEEECT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             ccceeccCCceEEEEee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc
Confidence                    234544543 233332222 233456889988763    25555677889999988754332211  1 11 


Q ss_pred             ---cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748          352 ---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       352 ---~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                         ....-.+++..++. ++++....+.|.+||....         .....+..+....++++|.|++..+++|.+..|.
T Consensus       222 ~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g---------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~  291 (314)
T d1pjxa_         222 GTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGG---------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA  291 (314)
T ss_dssp             CCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCB---------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             ccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCCC---------EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCc
Confidence               12355789998765 6777778899999998765         4555666666778999999987557788888898


Q ss_pred             EEEEECCC
Q 010748          429 VKLWDLSN  436 (502)
Q Consensus       429 i~vwd~~~  436 (502)
                      |..+++..
T Consensus       292 i~~~~~~~  299 (314)
T d1pjxa_         292 VWKFEWQR  299 (314)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            88888754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.84  E-value=1.9e-07  Score=88.21  Aligned_cols=213  Identities=8%  Similarity=0.024  Sum_probs=121.7

Q ss_pred             cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-eeeEee-ccCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEecC
Q 010748          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-KCNLTL-EHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDAR  340 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~-~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s--~dg~i~iwd~~  340 (502)
                      ....+..|+|+|++ ++|+++.. +.+..|.+... ...... .........+.+++++...+++..  ..+.|..+.+.
T Consensus        38 ~~~~~s~la~s~d~-~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHER-KNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTS-SEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCCC-CEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            44556789999994 56666654 56777776532 222221 112344567778888833223222  23555554432


Q ss_pred             CCCC------------ccc-e----EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe--
Q 010748          341 ISTH------------SGF-K----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--  401 (502)
Q Consensus       341 ~~~~------------~~~-~----~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--  401 (502)
                      ....            ... .    ......+.++.|+|++..++++......|.+|+......      ........  
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~------~~~~~~~~~~  189 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE------VELVGSVDAP  189 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC------EEEEEEEECS
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc------eeeccceeec
Confidence            2111            000 0    011234789999999886666655667888888654311      11111221  


Q ss_pred             ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-----------------CCCCcEEEEEEcCCCCcE
Q 010748          402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----------------PKAGAVFSVAFSEDSPFV  464 (502)
Q Consensus       402 ~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-----------------~~~~~v~~~~~spd~~~l  464 (502)
                      ........++|+|+++.+.++.-.+++|.+|++.......+....                 .+......+.++|+|+++
T Consensus       190 ~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  269 (365)
T d1jofa_         190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence            234567899999999444555666899999998776532222211                 111235678999999986


Q ss_pred             EEEEeCCC-----cEEEEECCCCccc
Q 010748          465 LAIGGSKG-----KLEIWDTLSDAGI  485 (502)
Q Consensus       465 l~sg~~dg-----~i~vwd~~~~~~~  485 (502)
                      +++...+.     .|..|++.....+
T Consensus       270 yvsnr~~~~~~~~~i~~~~~~~~g~~  295 (365)
T d1jofa_         270 FASSRANKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred             EEEcccCCCccceEEEEEEecCCCce
Confidence            66543332     3777877654433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.77  E-value=7.7e-06  Score=75.26  Aligned_cols=230  Identities=7%  Similarity=-0.009  Sum_probs=136.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .++|++.++-...+.|..|+.+......                           ...........|++.+++ .++++.
T Consensus        48 D~~G~Ly~~D~~~g~I~ri~p~g~~~~~---------------------------~~~~~~~~p~gla~~~dG-~l~va~   99 (319)
T d2dg1a1          48 DRQGQLFLLDVFEGNIFKINPETKEIKR---------------------------PFVSHKANPAAIKIHKDG-RLFVCY   99 (319)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCCEEE---------------------------EEECSSSSEEEEEECTTS-CEEEEE
T ss_pred             CCCCCEEEEECCCCEEEEEECCCCeEEE---------------------------EEeCCCCCeeEEEECCCC-CEEEEe
Confidence            6789988888888999888876422111                           111233457899999995 455554


Q ss_pred             ec----CCcEEEEeCCCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEecCCCCCccceEeecC
Q 010748          286 SA----DKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       286 s~----dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~  353 (502)
                      ..    .+.|...+............  -...+..+.+.++| ++.++....      +.+..++..... .......-.
T Consensus       100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~  177 (319)
T d2dg1a1         100 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNIS  177 (319)
T ss_dssp             CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEES
T ss_pred             cCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccce-eEEEeeccc
Confidence            32    23455556555444333321  12357789999999 665554321      234444443322 222233334


Q ss_pred             CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      ..+.++|+|++..++++-+..+.|+.|++......... .................+++.++| ++.++....+.|.+|+
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~-~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP-FGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE-EEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEEC
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceecc-ccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEEC
Confidence            56789999998766677778899999998754110000 000001111112335689999998 8888888899999999


Q ss_pred             CCCCCeeEEEEec----CCCCcEEEEEEcCCCCcEEEEE
Q 010748          434 LSNNQPSCIASRN----PKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       434 ~~~~~~~~~~~~~----~~~~~v~~~~~spd~~~ll~sg  468 (502)
                      . .++......+.    .+...+++++|.|.+..++++.
T Consensus       256 p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         256 K-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             T-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             C-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            6 56643333333    2344678999999887555544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=6.3e-06  Score=80.06  Aligned_cols=315  Identities=12%  Similarity=0.129  Sum_probs=158.6

Q ss_pred             ccccccccCCCceEEEEEecCCc----ceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748          141 DLEDMTINPNDAVIVCARNEDDV----SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~----~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~  216 (502)
                      .+....|||+++.|+.+......    ..-.+|+|+...+   ....-...  ......+.+    +.|||+|+.||-..
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~---~~~~l~~~--~~~~~~l~~----~~wSPDG~~iafv~  132 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG---DPQSLDPP--EVSNAKLQY----AGWGPKGQQLIFIF  132 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC---CCEECCCT--TCCSCCCSB----CCBCSSTTCEEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC---ceeeccCc--cCCccccce----eeeccCCceEEEEe
Confidence            56677899999999887642211    1225667766554   22111100  001111111    44599999998875


Q ss_pred             CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc---------cceeeEEeccCCCcEEEEEe-
Q 010748          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT---------DSVLGLAWNKEFRNILASAS-  286 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~V~~l~~~~~~~~~l~sgs-  286 (502)
                       ++.|.+.+...+...+.  +..+..             .   ..+.+..         ..-.++.|||+|. .||... 
T Consensus       133 -~~nl~~~~~~~~~~~~l--t~~g~~-------------~---~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~~  192 (465)
T d1xfda1         133 -ENNIYYCAHVGKQAIRV--VSTGKE-------------G---VIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAI  192 (465)
T ss_dssp             -TTEEEEESSSSSCCEEE--ECCCBT-------------T---TEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEE
T ss_pred             -cceEEEEecCCCceEEE--ecccCc-------------c---eeeccccchhhhhhhccccceEEECCCCC-eEEEEEe
Confidence             56788887765433221  111100             0   0111111         1124678999955 555543 


Q ss_pred             cCCc---------------------------------EEEEeCCCCeeeEee------ccCCCCeEEEEEcCCCCcEEEE
Q 010748          287 ADKQ---------------------------------VKIWDVAAGKCNLTL------EHHTDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       287 ~dg~---------------------------------v~vwd~~~~~~~~~~------~~h~~~v~~l~~~~~~~~~l~s  327 (502)
                      .+..                                 +.|+|+.++......      .....-+..+.|.+++ ++++.
T Consensus       193 D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~-~~~~~  271 (465)
T d1xfda1         193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVT  271 (465)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEE
T ss_pred             cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC-eEEEE
Confidence            2233                                 334444333221111      1112236778999988 55544


Q ss_pred             Ee-CC---CcEEEEecCCCCCccceEee-cCCe----eEEEeCCCCCCEEEE--EeCCC--cEEEEECCCCCCCCCCCCC
Q 010748          328 GS-FD---RSVVMKDARISTHSGFKWAV-AADV----ESLAWDPHAEHSFVV--SLEDG--TIKGFDIRTAKSDPDSTSQ  394 (502)
Q Consensus       328 ~s-~d---g~i~iwd~~~~~~~~~~~~~-~~~v----~~v~~~~~~~~~~~~--~~~dg--~v~i~d~~~~~~~~~~~~~  394 (502)
                      .. .+   ..|.++|..++......... .+.|    ....|.+++..+++.  .-.+|  .++.+.+........   .
T Consensus       272 ~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~---~  348 (465)
T d1xfda1         272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS---N  348 (465)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS---S
T ss_pred             EEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCC---C
Confidence            32 22   25778888887655433222 2222    345788888765443  22333  344444322110000   1


Q ss_pred             ccceEEeccCCCeeEE-EEcCCCCCEEEEEeCCC--cEEEEE--CCCCC-eeEEEEecCCCCcEEEEEEcCCCCcEEEEE
Q 010748          395 QSSFTLHAHDKAVCTI-SYNPLVPNLLATGSTDK--MVKLWD--LSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l-~~sp~~~~~l~t~s~dg--~i~vwd--~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~ll~sg  468 (502)
                      ..+..+....-.|..+ .|++.+..+.+++..++  .-.||.  +.... ..++...........++.|||++.|++.++
T Consensus       349 ~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~  428 (465)
T d1xfda1         349 DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (465)
T ss_dssp             CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             ceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence            2223333334445554 58887745555665442  233444  43332 122222223344577899999999866555


Q ss_pred             eCC--CcEEEEECCCCcccccc
Q 010748          469 GSK--GKLEIWDTLSDAGISNR  488 (502)
Q Consensus       469 ~~d--g~i~vwd~~~~~~~~~~  488 (502)
                      +.-  -.+.+++..+++.+..+
T Consensus       429 s~~~~P~~~~~~~~~~~~~~~L  450 (465)
T d1xfda1         429 EGPGVPMVTVHNTTDKKKMFDL  450 (465)
T ss_dssp             CSSSSCCEEEEETTTCCEEEEE
T ss_pred             ecCCCCeEEEEECCCCCEEEEE
Confidence            442  25788888888776544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.68  E-value=5e-06  Score=74.91  Aligned_cols=237  Identities=13%  Similarity=0.142  Sum_probs=144.9

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeecc----ccCCCcceeeeecCCCCCCCCCCEEEE-ecC
Q 010748          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI----IIPAFPLCMAWLDCPLKDREKGNFMAV-GSM  217 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~la~-g~~  217 (502)
                      ..+++.|+++++++-....     +|.+|+....   .+...-..    .....|..+.+.      ...+.++++ .+.
T Consensus        26 ~gvavd~dg~i~VaD~~n~-----rI~v~d~~G~---~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~   91 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNNH-----RIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVV------RNSGDIIVTERSP   91 (279)
T ss_dssp             EEEEECTTCCEEEEEGGGT-----EEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEE------TTTTEEEEEECGG
T ss_pred             cEEEEcCCCCEEEEECCCC-----EEEEEeCCCC---EEEEecccCCCccccccccccccc------ccccccceeccCC
Confidence            5789999999887765554     6777765432   11111000    011123333332      123444443 344


Q ss_pred             CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~  297 (502)
                      .+.|.+++.... ..                          ......+.....++++.+++ .++++....+.+.+++. 
T Consensus        92 ~~~i~~~~~~g~-~~--------------------------~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~-  142 (279)
T d1q7fa_          92 THQIQIYNQYGQ-FV--------------------------RKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQ-  142 (279)
T ss_dssp             GCEEEEECTTSC-EE--------------------------EEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECT-
T ss_pred             cccccccccccc-ce--------------------------eecCCCcccccceeccccCC-cEEEEeeccceeeEecc-
Confidence            466767665421 00                          00111234556788898884 56666667778888885 


Q ss_pred             CCeeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---ecCCeeEEEeCCCCCCEEEEEe
Q 010748          298 AGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       298 ~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~~~~  372 (502)
                      +++.+.++  ..+......+++.+++ +++++....+.|.+|+..... . ..+.   .......+++++++. ++++-.
T Consensus       143 ~g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~~-~-~~~g~~g~~~~P~giavD~~G~-i~Vad~  218 (279)
T d1q7fa_         143 NGNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY-L-RQIGGEGITNYPIGVGINSNGE-ILIADN  218 (279)
T ss_dssp             TSCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE-E-EEESCTTTSCSEEEEEECTTCC-EEEEEC
T ss_pred             CCceeecccccccccccceeeeccce-eEEeeeccccceeeeecCCce-e-eeecccccccCCcccccccCCe-EEEEEC
Confidence            46666665  3456678899999988 888888889999999976432 1 1222   223478899999875 555543


Q ss_pred             -CCCcEEEEECCCCCCCCCCCCCccceEEecc--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748          373 -EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       373 -~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                       .++.|.+|+.. +         ..+..+...  ......|++.|++ .++ ++..++.|++|......
T Consensus       219 ~~~~~v~~f~~~-G---------~~~~~~~~~~~~~~p~~vav~~dG-~l~-V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         219 HNNFNLTIFTQD-G---------QLISALESKVKHAQCFDVALMDDG-SVV-LASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SSSCEEEEECTT-S---------CEEEEEEESSCCSCEEEEEEETTT-EEE-EEETTTEEEEEECSCCC
T ss_pred             CCCcEEEEECCC-C---------CEEEEEeCCCCCCCEeEEEEeCCC-cEE-EEeCCCeEEEEEeeeec
Confidence             34579999853 2         445454332  3457899999987 554 45678999999987654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.51  E-value=3.9e-05  Score=70.37  Aligned_cols=206  Identities=9%  Similarity=0.068  Sum_probs=130.6

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEecCCCC
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARIST  343 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~  343 (502)
                      .+-.++|.+++ +++++-...+.|..|+..++.....+.........|+++++| +++++...+    +.+...+.....
T Consensus        41 ~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          41 QLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCce
Confidence            45689999984 577777788999999988776666665556678999999998 766665432    334445554443


Q ss_pred             CccceE--eecCCeeEEEeCCCCCCEEEEEeC------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          344 HSGFKW--AVAADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       344 ~~~~~~--~~~~~v~~v~~~~~~~~~~~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      ......  .....+..+.+.++|. ++++...      .+.+..++...          ..+..+...-...+.++|+|+
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg----------~~~~~~~~~~~~pnGia~s~d  187 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF----------RTVTPIIQNISVANGIALSTD  187 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS----------CCEEEEEEEESSEEEEEECTT
T ss_pred             eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc----------ceeEEEeeccceeeeeeeccc
Confidence            322111  1123467788999875 4444321      12344444332          223333333345678999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCe-e-----EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          416 VPNLLATGSTDKMVKLWDLSNNQP-S-----CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~-~-----~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +..+.++-+..+.|..|++..... .     ..............|++.++|. +.++....+.|.+|+- .++.+.++
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECC-CCcEEEEE
Confidence            844566667788999999864321 0     1111122223467899999998 6777778899999995 67766554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.43  E-value=0.00037  Score=62.72  Aligned_cols=225  Identities=11%  Similarity=0.050  Sum_probs=138.5

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++++..+=-..+.|..||..++...                          ..   .....+.++++.++ +.+++ ++.
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~--------------------------~~---~~~~~~~~i~~~~d-g~l~v-a~~   77 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKT--------------------------VH---ALPFMGSALAKISD-SKQLI-ASD   77 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEE--------------------------EE---ECSSCEEEEEEEET-TEEEE-EET
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEE--------------------------EE---ECCCCcEEEEEecC-CCEEE-EEe
Confidence            4556555556678888887643210                          00   12345788999888 43544 455


Q ss_pred             CCcEEEEeCCCCeeeEeecc----CCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEecCCCCCccceEeecCCeeEEE
Q 010748          288 DKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSF----DRSVVMKDARISTHSGFKWAVAADVESLA  359 (502)
Q Consensus       288 dg~v~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~  359 (502)
                      + .|.++|..+++.......    ....+..+.+.|+| ++.++...    .+.-.+|.+..++... ....-...+.++
T Consensus        78 ~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~~~~-~~~~~~~~Ng~~  154 (295)
T d2ghsa1          78 D-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKVTK-LFADISIPNSIC  154 (295)
T ss_dssp             T-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEEEE-EEEEESSEEEEE
T ss_pred             C-ccEEeecccceeeEEeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCCcEEE-EeeccCCcceee
Confidence            4 589999998875443321    12357888999999 65555432    2344566665544332 233344567899


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      |++++..++++-+..+.|..|++......... ............+....+++..+| ++.++.-..+.|..||. .++.
T Consensus       155 ~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~-~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp-~G~~  231 (295)
T d2ghsa1         155 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-KAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGNH  231 (295)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-CCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCCE
T ss_pred             ecCCCceEEEeecccceeeEeeeccccccccc-ceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecC-CCcE
Confidence            99998877777788899999987543111000 001112223344567889999988 77777667788999996 4554


Q ss_pred             eEEEEecCCCCcEEEEEEc-CCCCcEEEEEeCC
Q 010748          440 SCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK  471 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~s-pd~~~ll~sg~~d  471 (502)
                      .....+  ....+++++|- |+...|++|....
T Consensus       232 ~~~i~l--P~~~~T~~~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         232 IARYEV--PGKQTTCPAFIGPDASRLLVTSARE  262 (295)
T ss_dssp             EEEEEC--SCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             eeEecC--CCCceEEEEEeCCCCCEEEEEECCc
Confidence            333333  33568999995 6777677776543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=0.00024  Score=62.78  Aligned_cols=214  Identities=7%  Similarity=0.038  Sum_probs=135.9

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  343 (502)
                      .+...+.+|+|.+..+.++.+-...+.|+..++..+.....+......+.+|++...+.++..+-...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            34556888999887454555556678899989876655444444446788999987664555566677899999988765


Q ss_pred             CccceEeecCCeeEEEeCCCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      ...........+..++++|....++.+-...+.  |...++...         .........-...+++++.+.+..+..
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---------~~~~i~~~~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---------NRRILAQDNLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---------CCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---------CceeeeeecccccceEEEeecCcEEEE
Confidence            433222223568899999977655544333233  444455432         222222223345689999987744555


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +-...+.|...++.......+..  +. ....+|++.  +.+++.+-...+.|...|..+++.+......
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~v~~--~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~  248 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGRRKVLE--GL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH  248 (263)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEE--CC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred             EeCCCCEEEEEECCCCCeEEEEC--CC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCC
Confidence            55667889999997765333332  22 234678776  3446676667789999999988877555433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=0.0009  Score=59.06  Aligned_cols=214  Identities=12%  Similarity=0.076  Sum_probs=133.8

Q ss_pred             ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe----eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~  341 (502)
                      ...+.+|+|.+..+.+..+=...+.|.-.++....    ....+......+.+|++.+.+.++..+-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34567899988745444444556677776664321    11222333355678888877756666667778999999987


Q ss_pred             CCCccceEeecCCeeEEEeCCCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCE
Q 010748          342 STHSGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~  419 (502)
                      ................++.+|....++++.. ..+.|...++...          ....+ ...-...+++++.+.+..+
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs----------~~~~l~~~~~~~p~gl~iD~~~~~l  178 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----------DIYSLVTENIQWPNGITLDLLSGRL  178 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------CEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC----------ceecccccccceeeEEEeeccccEE
Confidence            6544433333456888999987664444432 3445666666532          22233 2333567899999877455


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ..+-+..+.|...++.......+...........++++..  .+++.+-..++.|...+..++..+......
T Consensus       179 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCCCcceEEEEcC
Confidence            6665667889999997765444444444444567788774  346776667788988888888766554443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.8e-05  Score=75.36  Aligned_cols=234  Identities=10%  Similarity=0.078  Sum_probs=127.7

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .+++.++.. ..+|.|.+|++.++...   .++.                     ...-..-.+....|+|++..+|+..
T Consensus        25 ~~~~~~~~~-~~~g~i~~~~~~~~~~~---~l~~---------------------~~~~~~~~~~~~~~SpD~~~vl~~~   79 (465)
T d1xfda1          25 ISDTEFIYR-EQKGTVRLWNVETNTST---VLIE---------------------GKKIESLRAIRYEISPDREYALFSY   79 (465)
T ss_dssp             SSSSCBCCC-CSSSCEEEBCGGGCCCE---EEEC---------------------TTTTTTTTCSEEEECTTSSEEEEEE
T ss_pred             eCCCcEEEE-eCCCcEEEEECCCCCEE---EEEc---------------------CccccccccceeEECCCCCeEEEEE
Confidence            466666543 45688999998754321   0110                     0011223567788999966444432


Q ss_pred             --------ecCCcEEEEeCCCCeeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe-----
Q 010748          286 --------SADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-----  350 (502)
Q Consensus       286 --------s~dg~v~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----  350 (502)
                              +..+.+.++|+.++......  ......+....|+|+| +.|+-.. ++.|.+.+...+........     
T Consensus        80 ~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG-~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~  157 (465)
T d1xfda1          80 NVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGV  157 (465)
T ss_dssp             SCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTT
T ss_pred             cccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCC-ceEEEEe-cceEEEEecCCCceEEEecccCcce
Confidence                    33577899999988654332  2334556778999999 5555443 56788888766544332211     


Q ss_pred             ----ec---------CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748          351 ----VA---------ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       351 ----~~---------~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                          ..         +.-..+-|+|+|..+++.-..+..|..+.+.....       .       ....+..+.+-.-| 
T Consensus       158 i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~-------~-------~~p~~~~~~Yp~~G-  222 (465)
T d1xfda1         158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------S-------IYPTVKPYHYPKAG-  222 (465)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------S-------SSCCCEEEECCBTT-
T ss_pred             eeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccc-------c-------ccceeeeeeccccC-
Confidence                11         11246779999886655555666666665543210       0       00112222222111 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEEe----cCCCCcEEEEEEcCCCCcEEEEEeCCC---cEEEEECCCCccc
Q 010748          418 NLLATGSTDKMVKLWDLSNNQPSCIASR----NPKAGAVFSVAFSEDSPFVLAIGGSKG---KLEIWDTLSDAGI  485 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~----~~~~~~v~~~~~spd~~~ll~sg~~dg---~i~vwd~~~~~~~  485 (502)
                      .--    ....+.++|+.++........    .....-+..+.|+|+++.++.....+.   .|.++|+.++++.
T Consensus       223 ~~n----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         223 SEN----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             SCC----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             CCC----CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence            100    012477788866542211111    111224778999999984333333332   5888999888754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=0.00048  Score=61.96  Aligned_cols=228  Identities=12%  Similarity=0.097  Sum_probs=138.5

Q ss_pred             ccccccCCCc-eEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748          143 EDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       143 ~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      +...|.+.++ +..+--..+     +|+.++...+   ....+   .++..+.++.+       .++|++++++ .+ -|
T Consensus        21 Egp~wd~~~~~l~wvDi~~~-----~I~r~d~~~g---~~~~~---~~~~~~~~i~~-------~~dg~l~va~-~~-gl   80 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILER-----ELHELHLASG---RKTVH---ALPFMGSALAK-------ISDSKQLIAS-DD-GL   80 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGT-----EEEEEETTTT---EEEEE---ECSSCEEEEEE-------EETTEEEEEE-TT-EE
T ss_pred             eCCeEECCCCEEEEEECCCC-----EEEEEECCCC---eEEEE---ECCCCcEEEEE-------ecCCCEEEEE-eC-cc
Confidence            3456776544 444433333     8888887665   33322   25666667765       3567766654 44 57


Q ss_pred             EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec----CCcEEEEeCC
Q 010748          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA----DKQVKIWDVA  297 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~----dg~v~vwd~~  297 (502)
                      .++|..++.... +..                      .........++.+.+.|+|+ +.++...    .+.-.+|.+.
T Consensus        81 ~~~d~~tg~~~~-l~~----------------------~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          81 FLRDTATGVLTL-HAE----------------------LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             EEEETTTCCEEE-EEC----------------------SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE
T ss_pred             EEeecccceeeE-Eee----------------------eecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeec
Confidence            788887543211 000                      00011234688889999954 4444332    2345677776


Q ss_pred             CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc----cce-Ee---ecCCeeEEEeCCCCCCEEE
Q 010748          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFK-WA---VAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~-~~---~~~~v~~v~~~~~~~~~~~  369 (502)
                      .++....+.. -.....+.|++++..++++-+..+.|..|++......    ... ..   ..+..-.+++..+|. +.+
T Consensus       137 ~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWv  214 (295)
T d2ghsa1         137 KGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWN  214 (295)
T ss_dssp             TTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEE
T ss_pred             CCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEe
Confidence            7765554433 3356789999999666777778899999987533211    111 11   234467888988764 677


Q ss_pred             EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEc-CCCCCEEEEEeCC
Q 010748          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN-PLVPNLLATGSTD  426 (502)
Q Consensus       370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~l~t~s~d  426 (502)
                      +....+.|..||.. +         +.+..+......+++++|- ++...+++|....
T Consensus       215 a~~~~g~V~~~dp~-G---------~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         215 ARWGEGAVDRYDTD-G---------NHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  262 (295)
T ss_dssp             EEETTTEEEEECTT-C---------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             eeeCCCceEEecCC-C---------cEeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence            76778899999964 3         5666776666779999996 5554566765543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.17  E-value=9.3e-05  Score=65.75  Aligned_cols=234  Identities=8%  Similarity=-0.036  Sum_probs=117.6

Q ss_pred             CCC--CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748          206 REK--GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       206 s~~--~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      +|+  |+.+|-.+ +|.|.+.|+..++..                            .+..+...+...+|||+|..+.+
T Consensus         7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~~----------------------------~Lt~~~~~~~~p~~SPDG~~iaf   57 (281)
T d1k32a2           7 NPDIHGDRIIFVC-CDDLWEHDLKSGSTR----------------------------KIVSNLGVINNARFFPDGRKIAI   57 (281)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEETTTCCEE----------------------------EEECSSSEEEEEEECTTSSEEEE
T ss_pred             CCCCCCCEEEEEe-CCcEEEEECCCCCEE----------------------------EEecCCCcccCEEECCCCCEEEE
Confidence            688  99988664 467888888753321                            12345677889999999664444


Q ss_pred             EEecCC-----cEEEEeCCCCeeeEeec------cCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEecCCCCCcc
Q 010748          284 SASADK-----QVKIWDVAAGKCNLTLE------HHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSG  346 (502)
Q Consensus       284 sgs~dg-----~v~vwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~  346 (502)
                      +...++     .|.++++.+++......      ..........|+|++ +.|+.....      ..+...+......  
T Consensus        58 ~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~--  134 (281)
T d1k32a2          58 RVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSMTCLYRVENDGINF--  134 (281)
T ss_dssp             EEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTCCEEEEEEGGGTEE--
T ss_pred             EEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCC-CEEEEEEccCCCccceeeeeecCCCcee--
Confidence            443333     37788887776543221      112345678899999 555554322      1233333332221  


Q ss_pred             ceEeecCCeeEEEeCCCCCCEEEEEeCCCc-----------EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748          347 FKWAVAADVESLAWDPHAEHSFVVSLEDGT-----------IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~-----------v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                       ..........+ |.+++...++.......           ........          ........+........++++
T Consensus       135 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  202 (281)
T d1k32a2         135 -VPLNLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS----------GAFKKIVDMSTHVSSPVIVGH  202 (281)
T ss_dssp             -EECCSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET----------TEEEEEECCSSCCEEEEEETT
T ss_pred             -EEecCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccc----------cceeeccCCccccceeeeecc
Confidence             11111112222 22222222222211110           00000000          111122223334445555553


Q ss_pred             CCCEEEEEeCC--CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748          416 VPNLLATGSTD--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       416 ~~~~l~t~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                        .++.....+  ..|.++|+.+.....+..  .....+  ..|+|||+.++.  ..++.|+++|+.+++.-+-..+.
T Consensus       203 --~~~~~~~~~~~~~l~~~d~~g~~~~~lt~--~~~~~~--~~~SpDG~~I~f--~~~~~l~~~d~~~g~~~~i~~~~  272 (281)
T d1k32a2         203 --RIYFITDIDGFGQIYSTDLDGKDLRKHTS--FTDYYP--RHLNTDGRRILF--SKGGSIYIFNPDTEKIEKIEIGD  272 (281)
T ss_dssp             --EEEEEECTTSSCEEEEEETTSCSCEECCC--CCSSCE--EEEEESSSCEEE--EETTEEEEECTTTCCEEECCCCC
T ss_pred             --ccceecccccccceEEEeCCCCceEEeec--CCCccc--ccCcCCCCEEEE--EeCCEEEEEECCCCCEEEeccCC
Confidence              333333333  347788888776433222  122233  468999997544  34678999999888765443333

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.89  E-value=0.00041  Score=61.35  Aligned_cols=236  Identities=9%  Similarity=0.042  Sum_probs=112.2

Q ss_pred             ccccCC--CceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC----C
Q 010748          145 MTINPN--DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----E  218 (502)
Q Consensus       145 ~~~~p~--~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~----d  218 (502)
                      +.++|+  |+.||..+. +     .||+++...+....|..+.     .......|       ||||+.||....    .
T Consensus         4 ~~~sPdi~G~~v~f~~~-~-----dl~~~d~~~g~~~~Lt~~~-----~~~~~p~~-------SPDG~~iaf~~~~~~~~   65 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCC-D-----DLWEHDLKSGSTRKIVSNL-----GVINNARF-------FPDGRKIAIRVMRGSSL   65 (281)
T ss_dssp             CCEEEEEETTEEEEEET-T-----EEEEEETTTCCEEEEECSS-----SEEEEEEE-------CTTSSEEEEEEEESTTC
T ss_pred             cccCCCCCCCEEEEEeC-C-----cEEEEECCCCCEEEEecCC-----CcccCEEE-------CCCCCEEEEEEeeCCCC
Confidence            467899  999887753 3     7999988776222222111     11123344       999999986532    2


Q ss_pred             C--cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec------CCc
Q 010748          219 P--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA------DKQ  290 (502)
Q Consensus       219 g--~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~------dg~  290 (502)
                      .  .|.++++..+....- .                    ................+|+|++. .|+....      ...
T Consensus        66 ~~~~i~~~~~~~g~~~~l-t--------------------~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~  123 (281)
T d1k32a2          66 NTADLYFYNGENGEIKRI-T--------------------YFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTC  123 (281)
T ss_dssp             CEEEEEEEETTTTEEEEC-C--------------------CCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCE
T ss_pred             CceEEEEEEecCCceEEe-e--------------------ecCCCccCccccccccccCCCCC-EEEEEEccCCCcccee
Confidence            2  355666554322110 0                    00000112234567788999955 5554322      123


Q ss_pred             EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCc-----------EEEEecCCCCCccceEeecCCeeEEE
Q 010748          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----------VVMKDARISTHSGFKWAVAADVESLA  359 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~-----------i~iwd~~~~~~~~~~~~~~~~v~~v~  359 (502)
                      +...+...+......   ......+ |.+++...++.......           ..+....... ...............
T Consensus       124 ~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  198 (281)
T d1k32a2         124 LYRVENDGINFVPLN---LGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPV  198 (281)
T ss_dssp             EEEEEGGGTEEEECC---SCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEE
T ss_pred             eeeecCCCceeEEec---CCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccCCccccceee
Confidence            455565555443222   2222223 33334244433322211           1111111111 111112223334445


Q ss_pred             eCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748          360 WDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       360 ~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      +.++  .++.....++  .|.++|+...          ....+..+. ......|+|+|..++++  .++.|+++|+.++
T Consensus       199 ~~~~--~~~~~~~~~~~~~l~~~d~~g~----------~~~~lt~~~-~~~~~~~SpDG~~I~f~--~~~~l~~~d~~~g  263 (281)
T d1k32a2         199 IVGH--RIYFITDIDGFGQIYSTDLDGK----------DLRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTE  263 (281)
T ss_dssp             EETT--EEEEEECTTSSCEEEEEETTSC----------SCEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTC
T ss_pred             eecc--ccceecccccccceEEEeCCCC----------ceEEeecCC-CcccccCcCCCCEEEEE--eCCEEEEEECCCC
Confidence            5543  2344443333  4777777654          223333222 22334689998554443  3578999999988


Q ss_pred             Cee
Q 010748          438 QPS  440 (502)
Q Consensus       438 ~~~  440 (502)
                      +..
T Consensus       264 ~~~  266 (281)
T d1k32a2         264 KIE  266 (281)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            743

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.83  E-value=0.0019  Score=59.59  Aligned_cols=258  Identities=12%  Similarity=0.139  Sum_probs=151.7

Q ss_pred             EEEecCCCcEEEeeCCCCCCcCcceecCCcchh------hhhhccccCCc---ccc------cccccCcccceeeEEecc
Q 010748          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKK---SSI------KYKKGSHTDSVLGLAWNK  276 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~---~~~------~~~~~~h~~~V~~l~~~~  276 (502)
                      +.+|+..|.|+|+-+.+++.+..+.++.....+      ..++.......   +..      .....+-..-. .+++..
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP-~~S~Td   94 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV-HMSFTE   94 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE-EEEEET
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC-cccccC
Confidence            567889999999999999888877776543322      01110000000   000      00011111111 556644


Q ss_pred             ---CCCcEEEEEecCCcEEEEeCCCCeeeEeecc-CCCCeEEEEEcCCCC-cEEEEEeCC------------------Cc
Q 010748          277 ---EFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSP-QILLSGSFD------------------RS  333 (502)
Q Consensus       277 ---~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~-~~l~s~s~d------------------g~  333 (502)
                         +|+.+++.-..+.+|.+-|+.+.++...+.. ....+..++..+... .+++.++..                  +.
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence               6666666777889999999999988664432 345567777654332 466665553                  23


Q ss_pred             EEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC-------------------------------------Cc
Q 010748          334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED-------------------------------------GT  376 (502)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d-------------------------------------g~  376 (502)
                      +.++|..+.+... .....+....+.++++|+..++++...                                     +.
T Consensus       175 ~t~ID~~tm~V~~-QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVAW-QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEEE-EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEEE-EeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            5667777654332 344566788899999988555554221                                     22


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--------e--eEEEEec
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--------P--SCIASRN  446 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--------~--~~~~~~~  446 (502)
                      +.+.|.+....      ...+..+... .....+.++|+|..+++++..+.++.|+|++...        +  .......
T Consensus       254 V~VVD~~~~~~------~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         254 VKVVDGRKEAS------SLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             EEEEECSGG--------CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             ceeecccccCC------cceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence            34444443210      1222333333 3357889999996566666679999999996421        1  1222222


Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~  480 (502)
                       ..-.-...+|...|. ...|---|..|.-|++.
T Consensus       327 -lglgPLht~fd~~g~-aytslfids~v~kw~~~  358 (459)
T d1fwxa2         327 -LGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             -CCSCEEEEEECTTSE-EEEEETTTTEEEEEEHH
T ss_pred             -cCcCccccccCCCce-EEEEeeccceEEEEecc
Confidence             223356678999885 57777789999999984

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.47  E-value=0.039  Score=50.61  Aligned_cols=283  Identities=7%  Similarity=-0.011  Sum_probs=129.4

Q ss_pred             cccccCCCceEEEEEecCC------cceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748          144 DMTINPNDAVIVCARNEDD------VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~~------~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~  217 (502)
                      ......++++++.|+...+      ...-.+++|+...+.   .........+....|..-     .+.++|++++.|+.
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~---w~~~~~~~~~~~~~~~~~-----~~~~~g~i~v~Gg~   95 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI---VSDRTVTVTKHDMFCPGI-----SMDGNGQIVVTGGN   95 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC---BCCCEEEECSCCCSSCEE-----EECTTSCEEEECSS
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCc---EeecCCCCCCcccceeEE-----EEecCCcEEEeecC
Confidence            3444567888888875321      112346677766541   111111111111122211     11478999999876


Q ss_pred             C-CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC------Cc
Q 010748          218 E-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD------KQ  290 (502)
Q Consensus       218 d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d------g~  290 (502)
                      + ..+.+||..+..-.. .                    ....     ....-.+.+..++ +.+++.|+..      ..
T Consensus        96 ~~~~~~~yd~~~~~w~~-~--------------------~~~~-----~~r~~~~~~~~~d-G~v~v~GG~~~~~~~~~~  148 (387)
T d1k3ia3          96 DAKKTSLYDSSSDSWIP-G--------------------PDMQ-----VARGYQSSATMSD-GRVFTIGGSWSGGVFEKN  148 (387)
T ss_dssp             STTCEEEEEGGGTEEEE-C--------------------CCCS-----SCCSSCEEEECTT-SCEEEECCCCCSSSCCCC
T ss_pred             CCcceeEecCccCcccc-c--------------------cccc-----ccccccceeeecC-Cceeeeccccccccccce
Confidence            6 689999986421100 0                    0000     1111223455666 4477776642      36


Q ss_pred             EEEEeCCCCeeeEeec---------cCCC-----CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe------
Q 010748          291 VKIWDVAAGKCNLTLE---------HHTD-----KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA------  350 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~---------~h~~-----~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------  350 (502)
                      +.+||+.+.+-...-.         .+..     .-..+...+++ .+++.+...+.+.+++..+.........      
T Consensus       149 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (387)
T d1k3ia3         149 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV  227 (387)
T ss_dssp             EEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred             eeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCC-CEEEecCcCCcEEecCcccCcEeeccccccCccc
Confidence            8999998765322100         0000     00111122334 5666666666677777665432211110      


Q ss_pred             ec--CCeeEEEeCCCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCccceEEe---ccCCCeeEEEEcCCCC
Q 010748          351 VA--ADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVP  417 (502)
Q Consensus       351 ~~--~~v~~v~~~~~~~~~~~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~  417 (502)
                      ..  ..-.++.+......+++.|+..        ....+.++.....      ....+...   .+...-.+....+++ 
T Consensus       228 ~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~p~~r~~~~~~~~~dg-  300 (387)
T d1k3ia3         228 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT------SPNTVFASNGLYFARTFHTSVVLPDG-  300 (387)
T ss_dssp             CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS------CCEEEECTTCCSSCCBSCEEEECTTS-
T ss_pred             CcccccccEEEeeccCCceEEEEeccCCCCCcccceeeccccccccc------CCCceeeccccccccccceeeeccCC-
Confidence            00  0112233332233355555422        1233333332210      00111111   111222345556777 


Q ss_pred             CEEEEEeCC-----------CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC
Q 010748          418 NLLATGSTD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       418 ~~l~t~s~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~  470 (502)
                      +++++|+.+           ..+.+||..+.+...+.........-....+.+||+ +|+.||.
T Consensus       301 ~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~-v~v~GG~  363 (387)
T d1k3ia3         301 STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG  363 (387)
T ss_dssp             CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             eEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCE-EEEEeCC
Confidence            788888743           147889988776433322211111112344679998 6888874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.031  Score=48.60  Aligned_cols=199  Identities=11%  Similarity=0.133  Sum_probs=127.5

Q ss_pred             EEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe-
Q 010748          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-  350 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-  350 (502)
                      .-.+|. .++||.-+ ..++.++|+++.+.++.+.. ...|.--.|-...  .|+-.+ +..|+-|++.....+...+. 
T Consensus        68 AIMhP~-~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR  141 (327)
T d1utca2          68 AIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDR  141 (327)
T ss_dssp             EEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS--EEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred             hhcCCC-CcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC--EEEEEc-CCceEEEcccCCCCchhhhhh
Confidence            345787 56776665 56899999999999888874 4577777887665  444443 56799999966544433332 


Q ss_pred             e----cCCeeEEEeCCCCCCEEEEEe------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC--CC
Q 010748          351 V----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PN  418 (502)
Q Consensus       351 ~----~~~v~~v~~~~~~~~~~~~~~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~~  418 (502)
                      +    ...|..-..+++.+.++++|-      -.|.+.+|....          +..+.+.+|...-..+.+.-+.  ..
T Consensus       142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er----------~~sQ~ieGhaa~F~~~~~~g~~~~~~  211 (327)
T d1utca2         142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----------KVSQPIEGHAASFAQFKMEGNAEEST  211 (327)
T ss_dssp             CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT----------TEEEEECCSEEEEEEECCTTCSSCEE
T ss_pred             cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc----------CcCccccceeeeeEEEEcCCCCCCce
Confidence            2    345777778888776666652      246788999875          3456666775544444332111  12


Q ss_pred             EEEEEe---CCCcEEEEECCCCC---e---eEEEEe----cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748          419 LLATGS---TDKMVKLWDLSNNQ---P---SCIASR----NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       419 ~l~t~s---~dg~i~vwd~~~~~---~---~~~~~~----~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      +++.+.   ..+.++|.++....   +   ......    ........++..++... ++..-+.-|.|++||+.++.++
T Consensus       212 lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         212 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEE
Confidence            333322   23578888886521   1   111111    12234567888888877 6777889999999999999987


Q ss_pred             cc
Q 010748          486 SN  487 (502)
Q Consensus       486 ~~  487 (502)
                      ..
T Consensus       291 ~~  292 (327)
T d1utca2         291 YM  292 (327)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.046  Score=47.44  Aligned_cols=161  Identities=10%  Similarity=0.028  Sum_probs=98.6

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE--ecCCCCC
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK--DARISTH  344 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~  344 (502)
                      ..+.+|++...++++..+-...+.|.+.++....+...+...-..+..+++.|..+.++.+-...+..+|+  ++.....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            45778888766565556666778999999876554333343346789999999884444443333333444  5544333


Q ss_pred             ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      .......-.....+++++.+..++++-...+.|...++...         .....+.+. ....+|++.  +..+..+-.
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---------~~~~v~~~~-~~P~~lav~--~~~lYwtd~  226 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---------GRRKVLEGL-QYPFAVTSY--GKNLYYTDW  226 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---------EEEEEEECC-CSEEEEEEE--TTEEEEEET
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---------CeEEEECCC-CCcEEEEEE--CCEEEEEEC
Confidence            22111222456789998876655555567788999888754         222222222 234577776  325556655


Q ss_pred             CCCcEEEEECCCCCe
Q 010748          425 TDKMVKLWDLSNNQP  439 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~  439 (502)
                      ..+.|...|..+++.
T Consensus       227 ~~~~I~~~~~~~g~~  241 (263)
T d1npea_         227 KTNSVIAMDLAISKE  241 (263)
T ss_dssp             TTTEEEEEETTTTEE
T ss_pred             CCCEEEEEECCCCcc
Confidence            678888889887763

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.061  Score=46.71  Aligned_cols=183  Identities=11%  Similarity=0.014  Sum_probs=113.6

Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc---cceE-eecCCeeEEEeCCCC
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKW-AVAADVESLAWDPHA  364 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~-~~~~~v~~v~~~~~~  364 (502)
                      ..|+..++.+......+. ....+.+|.|++....++.+-...+.|.-.++......   .... .....+..+++.+.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            358888988765444444 45567899999887444444445667776666542211   1111 112446778887766


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE-eCCCcEEEEECCCCCeeEEE
Q 010748          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-STDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~-s~dg~i~vwd~~~~~~~~~~  443 (502)
                      .++.++-...+.|.+.++...         ...............+++.|..+.++.+- +..+.|.-.++.......+ 
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~---------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l-  158 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-  158 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-
T ss_pred             ceEEEEecCCCEEEeEecCCc---------eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecc-
Confidence            766776677789999998754         33333444456678999998763444443 2345677777766553222 


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~  483 (502)
                       ..........+++.+.+..+..+-...+.|...++....
T Consensus       159 -~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         159 -VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             -ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             -cccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence             223345678999998877666666777889888886543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.15  E-value=0.0046  Score=56.95  Aligned_cols=189  Identities=8%  Similarity=0.050  Sum_probs=110.9

Q ss_pred             EEEEEecCCcEEEEeCCCCeeeEeeccCC---------------------------------------CCe--EEEEEcC
Q 010748          281 ILASASADKQVKIWDVAAGKCNLTLEHHT---------------------------------------DKV--QAVAWNH  319 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~---------------------------------------~~v--~~l~~~~  319 (502)
                      .|.||+..|.|+|+-+.+++.+..+.-.+                                       +..  ..+++..
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            57788999999999998887766542100                                       000  1233322


Q ss_pred             ---CCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCC-CEEEEEeCC------------------Cc
Q 010748          320 ---HSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAE-HSFVVSLED------------------GT  376 (502)
Q Consensus       320 ---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~-~~~~~~~~d------------------g~  376 (502)
                         +|..+++.-..+.+|.+.|+++.+...... .....+..++..+... .+++.++..                  +.
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence               453344444578899999999877644222 2344566666544322 245555442                  23


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC------------------------------
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD------------------------------  426 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d------------------------------  426 (502)
                      +.++|..+.         ...+.+.. .+....+.++++| +++++.+.+                              
T Consensus       175 ~t~ID~~tm---------~V~~QV~V-~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         175 FTAVDADKW---------EVAWQVLV-SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             EEEEETTTT---------EEEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             EEEEecCCc---------eEEEEeee-CCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence            566777765         44444443 3456788999998 666665532                              


Q ss_pred             --------CcEEEEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748          427 --------KMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 --------g~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~  481 (502)
                              +.+.+-|.+.... ..+..+.. ......+.++|||+|+++++..+.++.|+|++.
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             hcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                    2234444433110 01111111 112346899999999999999999999999965

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.06  E-value=0.08  Score=45.96  Aligned_cols=233  Identities=13%  Similarity=0.197  Sum_probs=135.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|..+.||.=+ ...++|||+++...+..                         +   .....|.--.|-.+  +.|+-.
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks-------------------------~---~~~e~VvfWkWis~--~~L~lV  119 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKA-------------------------H---TMTDDVTFWKWISL--NTVALV  119 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEE-------------------------E---ECSSCCCEEEESSS--SEEEEE
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhce-------------------------E---EcCCCcEEEEecCC--CEEEEE
Confidence            68888888766 46899999985322211                         1   12356777778765  356655


Q ss_pred             ecCCcEEEEeCCCC-eeeEeeccCC----CCeEEEEEcCCCCcEEEEEe------CCCcEEEEecCCCCCccceEeecCC
Q 010748          286 SADKQVKIWDVAAG-KCNLTLEHHT----DKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       286 s~dg~v~vwd~~~~-~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~  354 (502)
                      +. ..|+-|++... .+++.+..|.    ..|..-..+++..-++++|=      -.|.+.+|......... ..+|.+.
T Consensus       120 T~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~-ieGhaa~  197 (327)
T d1utca2         120 TD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS  197 (327)
T ss_dssp             CS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE-ECCSEEE
T ss_pred             cC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc-ccceeee
Confidence            54 57999999532 4566664443    46667777787733333331      23678888887543222 3333333


Q ss_pred             eeEEEeC--CCCCCEEEEE---eCCCcEEEEECCCCCCCCCCCCCccceEEe----ccCCCeeEEEEcCCCCCEEEEEeC
Q 010748          355 VESLAWD--PHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLH----AHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       355 v~~v~~~--~~~~~~~~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...+...  +....+|+.+   ...+.+++.++.......... .+....+.    ....--.++..++.. .+++.-+.
T Consensus       198 F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f-~kk~vdi~fppea~~DFPvamqvs~ky-giiyviTK  275 (327)
T d1utca2         198 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-PKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK  275 (327)
T ss_dssp             EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC-CCEEEECCCCTTCTTCCEEEEEEETTT-TEEEEEET
T ss_pred             eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC-cceeEEEECCccccCCcEEEEEeeccC-CEEEEEec
Confidence            3333222  1111123222   233689999987642211110 11111111    123445678888876 78999999


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~v  476 (502)
                      -|.|++||+.++.  +++.-.-...+|+..+-...... +++-..+|.|.-
T Consensus       276 ~G~i~lyDleTgt--~i~~nRIs~~~iF~~a~~~~~~G-i~~VNr~GqVl~  323 (327)
T d1utca2         276 YGYIHLYDLETGT--CIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLS  323 (327)
T ss_dssp             TSEEEEEETTTCC--EEEEEECCSSCEEEEEEETTTTE-EEEEETTSEEEE
T ss_pred             CcEEEEEEccccc--EEEEeecCCCceEEeccCCCCce-EEEECCCCeEEE
Confidence            9999999999998  45554445667776666665544 444567776643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.85  E-value=0.15  Score=49.54  Aligned_cols=26  Identities=15%  Similarity=0.061  Sum_probs=22.2

Q ss_pred             EEEEEeCCCcEEEEECCCCccccccc
Q 010748          464 VLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       464 ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ++.+|+.||.++.+|.++++.+-+.-
T Consensus       477 lVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         477 LVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEE
Confidence            57779999999999999999985543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.64  E-value=0.067  Score=48.91  Aligned_cols=73  Identities=11%  Similarity=0.112  Sum_probs=46.3

Q ss_pred             ceeeEEeccCCCcEEEEEecC-CcEEEEeCCCCeeeEeecc-CCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEec
Q 010748          268 SVLGLAWNKEFRNILASASAD-KQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDA  339 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~d-g~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~d------g~i~iwd~  339 (502)
                      ...+.++.++ +.+++.|+.+ ..+.+||..+.+-...-.. ....-.+++..+++ .+++.|+..      ..+.+||.
T Consensus        77 ~~~~~~~~~~-g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~  154 (387)
T d1k3ia3          77 FCPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSP  154 (387)
T ss_dssp             SSCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEET
T ss_pred             ceeEEEEecC-CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC-ceeeeccccccccccceeeeecC
Confidence            3445677788 4577777654 5899999987754332111 11223456667777 777777653      36889998


Q ss_pred             CCC
Q 010748          340 RIS  342 (502)
Q Consensus       340 ~~~  342 (502)
                      .+.
T Consensus       155 ~~~  157 (387)
T d1k3ia3         155 SSK  157 (387)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.41  E-value=0.46  Score=45.81  Aligned_cols=58  Identities=9%  Similarity=0.131  Sum_probs=36.5

Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      |.|.-||+.+++..=......+   ..+-.++-.+. |+.+|+.||.++.+|..+++.+-+.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---CCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC---CCCceeEECCC-EEEEECCCCcEEEEECCCCcEeEEE
Confidence            4577788888874322222222   11111222344 6777999999999999999998553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.40  E-value=0.21  Score=48.66  Aligned_cols=59  Identities=12%  Similarity=0.054  Sum_probs=35.3

Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |.|.-||+.+++.  +.... +..++.+-.++..+. |+..|+.||.++.+|..+++.+-+.-
T Consensus       453 G~l~A~D~~TG~~--~W~~~-~~~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDY--KWEKM-ERFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCE--EEEEE-ESSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCce--ecccC-CCCCCccceeEecCC-EEEEECCCCeEEEEECCCCcEeeEEE
Confidence            4566777777763  22211 111111111222344 56679999999999999999986543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.39  E-value=0.48  Score=45.79  Aligned_cols=57  Identities=9%  Similarity=-0.006  Sum_probs=36.4

Q ss_pred             CcEEEEeCCCCeeeEeeccCCCC----------e-EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDK----------V-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      ..+.-.|+.+|+.+..++.+...          + ..+.........++.++.+|.+.++|..+++.+
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence            46778899999988877643211          1 122222222135678889999999998877643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.30  E-value=0.43  Score=44.27  Aligned_cols=241  Identities=14%  Similarity=0.069  Sum_probs=124.3

Q ss_pred             CCCCCEEEEec----C-CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748          206 REKGNFMAVGS----M-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       206 s~~~~~la~g~----~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      ||++++||.+-    . -..|+++|+.++..+...                          +  .......++|.+++..
T Consensus       133 Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~--------------------------i--~~~~~~~~~W~~D~~~  184 (430)
T d1qfma1         133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--------------------------L--ERVKFSCMAWTHDGKG  184 (430)
T ss_dssp             CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--------------------------E--EEECSCCEEECTTSSE
T ss_pred             cCCCCEEEEEeccccCchheeEEeccCcceecccc--------------------------c--ccccccceEEcCCCCE
Confidence            89999998642    2 247999999875432210                          0  0112256889999665


Q ss_pred             EEEEEec---------------CCcEEEEeCCCCee--eEeecc--CCCCeEEEEEcCCCCcEEEEEeC--CCc--EEEE
Q 010748          281 ILASASA---------------DKQVKIWDVAAGKC--NLTLEH--HTDKVQAVAWNHHSPQILLSGSF--DRS--VVMK  337 (502)
Q Consensus       281 ~l~sgs~---------------dg~v~vwd~~~~~~--~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~--dg~--i~iw  337 (502)
                      ++++.-.               ...|..|.+.+...  ...+..  ....+..+..++++..++++...  .+.  +.+.
T Consensus       185 ~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence            5555421               23588888876532  233332  23346677788888333333332  333  3444


Q ss_pred             ecCCCCCcc-------ceE-eecCCeeEEEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccceEEe-ccCC
Q 010748          338 DARISTHSG-------FKW-AVAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDK  405 (502)
Q Consensus       338 d~~~~~~~~-------~~~-~~~~~v~~v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~  405 (502)
                      ++.......       ... .......-+..  .+..+++...   .++.|...++....       ......+. .+..
T Consensus       265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Tn~~a~~~~L~~~~~~~~~-------~~~w~~vi~~~~~  335 (430)
T d1qfma1         265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--EGTVFTFKTNRHSPNYRLINIDFTDPE-------ESKWKVLVPEHEK  335 (430)
T ss_dssp             EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ETTEEEEEECTTCTTCEEEEEETTBCC-------GGGCEEEECCCSS
T ss_pred             eCCCcccccccccceeEeecccccceEEEec--CCceeecccCcccccceeEEecCCCCc-------cccceEEecccCc
Confidence            554322110       011 11122222222  2232333332   34667777776541       12223333 3444


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC-C--CcEEEEECC
Q 010748          406 AVCTISYNPLVPNLLATGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS-K--GKLEIWDTL  480 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~-d--g~i~vwd~~  480 (502)
                      .+..-.+...+..+++....++  .|+++++.++....+  .....+.|..+...++...+.++-++ -  .++.-||+.
T Consensus       336 ~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~--~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~  413 (430)
T d1qfma1         336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKI--FPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (430)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEE--ECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             ceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEe--cCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence            4544333333323444444554  488899988874333  33445667777666666544443322 1  578999999


Q ss_pred             CCccc
Q 010748          481 SDAGI  485 (502)
Q Consensus       481 ~~~~~  485 (502)
                      +++.-
T Consensus       414 t~~~~  418 (430)
T d1qfma1         414 KEELE  418 (430)
T ss_dssp             SSSCC
T ss_pred             CCCcc
Confidence            88653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.26  E-value=0.39  Score=46.48  Aligned_cols=28  Identities=14%  Similarity=0.265  Sum_probs=23.1

Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748          460 DSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       460 d~~~ll~sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+. ++.+|+.||.++.+|..+++.+-+.
T Consensus       487 agg-lVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         487 AGN-VVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             TTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCC-EEEEECCCCeEEEEECCCCcEeEEE
Confidence            444 6777999999999999999998553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.72  E-value=0.65  Score=41.48  Aligned_cols=197  Identities=10%  Similarity=0.130  Sum_probs=114.7

Q ss_pred             CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcC----CC-CcEEEEEe-CC---CcEEEEecCCCCCccceE
Q 010748          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH----HS-PQILLSGS-FD---RSVVMKDARISTHSGFKW  349 (502)
Q Consensus       279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~----~~-~~~l~s~s-~d---g~i~iwd~~~~~~~~~~~  349 (502)
                      ..+++.....+-|.+||+. |+.+..+.  .+.+..+..-.    .+ ...+++++ .+   .+|.+|.+..........
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            4466666777779999985 77777664  35666655432    11 12344444 22   357788775332211111


Q ss_pred             --------eecCCeeEEEe--CCCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748          350 --------AVAADVESLAW--DPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       350 --------~~~~~v~~v~~--~~~~~-~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                              .....+..+|+  ++... .++++....|.+..|.+.......  .....++.+. -...+-+|.+.... .
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~--v~~~lvr~f~-~~~q~EGCVvDde~-~  192 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY--ISGKKVRAFK-MNSQTEGMAADDEY-G  192 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS--EEEEEEEEEE-CSSCEEEEEEETTT-T
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc--eeeEeeeccC-CCCccceEEEeCCC-C
Confidence                    11123556665  66543 356777789999888774321100  0013334443 34568889999876 7


Q ss_pred             EEEEEeCCCcEEEEECCCC--C-eeEEEEec--CCCCcEEEEEEc--CCC-CcEEEEEeCCCcEEEEECCCC
Q 010748          419 LLATGSTDKMVKLWDLSNN--Q-PSCIASRN--PKAGAVFSVAFS--EDS-PFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~--~-~~~~~~~~--~~~~~v~~~~~s--pd~-~~ll~sg~~dg~i~vwd~~~~  482 (502)
                      .|+.+-.+..|..+++...  . ...+....  ...+-+-.++.-  +++ .|+|+|.-.+++..|||..+.
T Consensus       193 ~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            8888888766666665422  1 12232222  235667777754  333 478888878899999999774

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.58  E-value=1.1  Score=43.18  Aligned_cols=60  Identities=8%  Similarity=0.128  Sum_probs=37.0

Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      |.|.-+|+.+++.  +.....+ .++.+-..+..+. ++.+|+.||.++.+|..+|+.+-+.-.
T Consensus       466 G~l~AiD~~TG~i--~W~~~~~-~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKV--VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCE--EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcE--EeecCCC-CCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            4566777777763  2222211 1222112233455 567799999999999999999865443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.21  E-value=1.4  Score=42.16  Aligned_cols=57  Identities=7%  Similarity=0.046  Sum_probs=36.3

Q ss_pred             CcEEEEeCCCCeeeEeeccCCCCe-----------EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748          289 KQVKIWDVAAGKCNLTLEHHTDKV-----------QAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v-----------~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      ..|.-.|+.+++....++.....+           ..+.........++.++.+|.+.++|..+++..
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence            457777999998877665422211           222222222246777888999999998887653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.00  E-value=1.3  Score=40.69  Aligned_cols=253  Identities=12%  Similarity=0.093  Sum_probs=123.2

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC--
Q 010748          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--  218 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d--  218 (502)
                      .+..+.++|+++++|.+-..+..-...+++++...+   ...... .. ......+.|       .++++.|+....+  
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg---~~~~~~-i~-~~~~~~~~W-------~~D~~~~~Y~~~~~~  193 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDV-LE-RVKFSCMAW-------THDGKGMFYNAYPQQ  193 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEE-EE-EECSCCEEE-------CTTSSEEEEEECCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcc---eecccc-cc-cccccceEE-------cCCCCEEEEEEeccc
Confidence            345678999999999887665544567777776665   332211 11 111134556       6788877654332  


Q ss_pred             --------------CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748          219 --------------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       219 --------------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                                    ..|..|.+.+.....                       ............+..+..+++++.++++
T Consensus       194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-----------------------~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         194 DGKSDGTETSTNLHQKLYYHVLGTDQSED-----------------------ILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGC-----------------------EEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cCcccccccccCCcceEEEEECCCCcccc-----------------------ccccccccCCceEEeeeccCCcceeeEE
Confidence                          245555554321110                       0111111223346667788886644444


Q ss_pred             Eec--CCcEEEE--eCCCCe--------eeEeeccCCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCccc--
Q 010748          285 ASA--DKQVKIW--DVAAGK--------CNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDARISTHSGF--  347 (502)
Q Consensus       285 gs~--dg~v~vw--d~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~--  347 (502)
                      .+.  +....+|  ++....        ....+......+.-+. +..+ .+++...   .++.|...++........  
T Consensus       251 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~  328 (430)
T d1qfma1         251 IREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKV  328 (430)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETT-EEEEEECTTCTTCEEEEEETTBCCGGGCEE
T ss_pred             eeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEe-cCCc-eeecccCcccccceeEEecCCCCccccceE
Confidence            432  3334444  543221        1112222222233222 2222 3444333   246777777776543321  


Q ss_pred             eEe-ecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748          348 KWA-VAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       348 ~~~-~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ... +...+..-.+...+..+++....++  .|+++++..+         ..........+.|..+...+....+.++-+
T Consensus       329 vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~---------~~~~~~~~~~~sv~~~~~~~~~~~~~~~~s  399 (430)
T d1qfma1         329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFT  399 (430)
T ss_dssp             EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred             EecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCC---------cEEEecCCCCceEeeccCCCCCCEEEEEEc
Confidence            222 2233433333332333444445565  4788888765         222223333455655555555534444433


Q ss_pred             C---CCcEEEEECCCCCe
Q 010748          425 T---DKMVKLWDLSNNQP  439 (502)
Q Consensus       425 ~---dg~i~vwd~~~~~~  439 (502)
                      .   -.++..+|+.+++.
T Consensus       400 s~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         400 SFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             CSSCCCEEEEEETTSSSC
T ss_pred             CCCCCCeEEEEECCCCCc
Confidence            2   36688889888753

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.51  Score=42.69  Aligned_cols=96  Identities=8%  Similarity=0.011  Sum_probs=63.2

Q ss_pred             ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (502)
                      .|..++|+.+   .|+.. .++.+..++..+-........-..++..+.++|.   .++....++.+.++++........
T Consensus        88 ~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~  160 (381)
T d1xipa_          88 DVIFVCFHGD---QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQL  160 (381)
T ss_dssp             TEEEEEEETT---EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CeEEEEeeCC---EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccc
Confidence            5888999865   44443 4466888887765444444444567889999884   466777899999999987653221


Q ss_pred             -----eEeecCCeeEEEeCCCCCCEEEEE
Q 010748          348 -----KWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       348 -----~~~~~~~v~~v~~~~~~~~~~~~~  371 (502)
                           .+...+.+.+++|++.+. .++++
T Consensus       161 ~~~v~~~~~~~~~~~v~ws~kgk-q~v~~  188 (381)
T d1xipa_         161 AQNVTSFDVTNSQLAVLLKDRSF-QSFAW  188 (381)
T ss_dssp             EESEEEEEECSSEEEEEETTSCE-EEEEE
T ss_pred             cCCcceEEecCCceEEEEeCCcE-EEEEe
Confidence                 123346677788877543 45555

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.82  E-value=1.2  Score=39.47  Aligned_cols=185  Identities=8%  Similarity=-0.059  Sum_probs=97.1

Q ss_pred             eeeEEeccCCCcEEEEEe------------cCCcEEEEeCCCCeee-EeeccCC-------CCeEEEEE--cCCCCcEEE
Q 010748          269 VLGLAWNKEFRNILASAS------------ADKQVKIWDVAAGKCN-LTLEHHT-------DKVQAVAW--NHHSPQILL  326 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs------------~dg~v~vwd~~~~~~~-~~~~~h~-------~~v~~l~~--~~~~~~~l~  326 (502)
                      .-.|...|++. .+++++            ..|.|.++|+.+.+.. ..+....       -....+..  .+++..+|+
T Consensus        37 ~EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            34577788844 444432            1488999998765332 1111111       11233333  345544566


Q ss_pred             EEeC---CCcEEEEecCCCCCccc-eEee----cCCeeEEEeCCCCCCEEEEEe-----------------CCCcEEEEE
Q 010748          327 SGSF---DRSVVMKDARISTHSGF-KWAV----AADVESLAWDPHAEHSFVVSL-----------------EDGTIKGFD  381 (502)
Q Consensus       327 s~s~---dg~i~iwd~~~~~~~~~-~~~~----~~~v~~v~~~~~~~~~~~~~~-----------------~dg~v~i~d  381 (502)
                      +...   ..+|-+|++........ ....    ....+.+++..++. ++++-.                 .-|.|..|+
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            6543   45788888765443211 1111    12356777766553 444421                 112333343


Q ss_pred             CCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCC
Q 010748          382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  461 (502)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~  461 (502)
                      ..            ........-...+.|+++|++..++++-+..+.|++|++.............-.+..-.+.+.+.+
T Consensus       195 ~~------------~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~  262 (340)
T d1v04a_         195 PN------------DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT  262 (340)
T ss_dssp             SS------------CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred             CC------------ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCC
Confidence            22            122222333567999999998566677777889999998765422222222234567788887644


Q ss_pred             CcEEEE
Q 010748          462 PFVLAI  467 (502)
Q Consensus       462 ~~ll~s  467 (502)
                      .++.++
T Consensus       263 g~lwva  268 (340)
T d1v04a_         263 GDLWVG  268 (340)
T ss_dssp             CCEEEE
T ss_pred             CEEEEE
Confidence            333443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.73  E-value=1.2  Score=39.65  Aligned_cols=146  Identities=12%  Similarity=0.064  Sum_probs=80.6

Q ss_pred             CCcEEEEecCCCCCccceEeec-C-------CeeEEEe--CCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccc
Q 010748          331 DRSVVMKDARISTHSGFKWAVA-A-------DVESLAW--DPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~-~-------~v~~v~~--~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~  397 (502)
                      .|.|.++|+............. .       ....+..  .+++..+|++..   ...+|.+|++......     ...+
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~-----l~~~  141 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-----LLHL  141 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-----EEEE
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCe-----EEEE
Confidence            4889999988765433222211 1       1222222  344444454443   3456888887644100     0111


Q ss_pred             eEEec-cCCCeeEEEEcCCCCCEEEEEe--C-------------CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCC
Q 010748          398 FTLHA-HDKAVCTISYNPLVPNLLATGS--T-------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  461 (502)
Q Consensus       398 ~~~~~-h~~~v~~l~~sp~~~~~l~t~s--~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~  461 (502)
                      .++.. .....+.+++..++ .+++|-.  .             -+...+|....+....+.   ......+.++++|++
T Consensus       142 ~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~---~~l~~pNGI~~s~d~  217 (340)
T d1v04a_         142 KTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA---EGFDFANGINISPDG  217 (340)
T ss_dssp             EEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE---EEESSEEEEEECTTS
T ss_pred             eecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc---CCCCccceeEECCCC
Confidence            11111 12446788888877 7777731  1             022344444444322222   123457899999999


Q ss_pred             CcEEEEEeCCCcEEEEECCCCccc
Q 010748          462 PFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       462 ~~ll~sg~~dg~i~vwd~~~~~~~  485 (502)
                      ++++++-+..++|++|++.....+
T Consensus       218 ~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         218 KYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CEEEEEeCCCCeEEEEEeCCCccc
Confidence            988888888999999999765443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.56  E-value=1.5  Score=39.54  Aligned_cols=175  Identities=11%  Similarity=0.043  Sum_probs=98.2

Q ss_pred             cceeeEEeccCCCcEEEEEecCCcEEEEeCCC-----------CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 010748          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA-----------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV  335 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~  335 (502)
                      ....-|++++..+ +|+.|+.++ ++|-.+..           .......  .-..|..++|+.+   .|+.. .++.+.
T Consensus        37 ~~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d---~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD---QVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT---EEEEE-ESSEEE
T ss_pred             cccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC---EEEEE-eCCCEE
Confidence            3466788888744 787777765 66765321           1111111  1236888999754   34443 456678


Q ss_pred             EEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce----EEeccCCCeeEEE
Q 010748          336 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF----TLHAHDKAVCTIS  411 (502)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~  411 (502)
                      .++...-...........++..+.++|.   .++....+|.+.++++.....       ..+.    .+. -.+.+.+++
T Consensus       109 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~-------~~~~~~v~~~~-~~~~~~~v~  177 (381)
T d1xipa_         109 SLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST-------KQLAQNVTSFD-VTNSQLAVL  177 (381)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE-------EEEEESEEEEE-ECSSEEEEE
T ss_pred             EEEeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCcc-------ccccCCcceEE-ecCCceEEE
Confidence            8887765444333445677888999883   577777899999999987621       1111    111 135577777


Q ss_pred             EcCCCCCEEEEEeCCCcEEEE-ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcE
Q 010748          412 YNPLVPNLLATGSTDKMVKLW-DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV  464 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vw-d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l  464 (502)
                      |++.+ ..++++..++ ..+- ++....  .+.........|.++.|..+..|+
T Consensus       178 ws~kg-kq~v~~~g~~-~q~k~~i~~~~--~~~~p~~~~~~v~sI~WL~~~~F~  227 (381)
T d1xipa_         178 LKDRS-FQSFAWRNGE-MEKQFEFSLPS--ELEELPVEEYSPLSVTILSPQDFL  227 (381)
T ss_dssp             ETTSC-EEEEEEETTE-EEEEEEECCCH--HHHTSCTTTSEEEEEEESSSSEEE
T ss_pred             EeCCc-EEEEEeCCCc-eeeccCCCCcc--ccCCCcCCCcceeEEEEecCceEE
Confidence            77765 5556553322 1111 111110  000001233468888888777653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.92  E-value=0.41  Score=46.34  Aligned_cols=51  Identities=10%  Similarity=0.121  Sum_probs=34.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe-eEEEEcCCCCCEEEEEeC
Q 010748          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGST  425 (502)
Q Consensus       366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~l~t~s~  425 (502)
                      .++++|+.||.++.||.+++         +.++++....+.. .-+.|..+|.++++..+.
T Consensus       489 glVF~G~~dg~l~A~Da~TG---------e~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G  540 (573)
T d1kb0a2         489 NVVFQGTADGRLVAYHAATG---------EKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG  540 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTC---------CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CEEEEECCCCeEEEEECCCC---------cEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence            47888999999999999998         7788776543211 114455567566655543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.94  E-value=2.3  Score=40.86  Aligned_cols=79  Identities=15%  Similarity=0.248  Sum_probs=48.7

Q ss_pred             CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC----CCC
Q 010748          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP----KAG  450 (502)
Q Consensus       375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~----~~~  450 (502)
                      |.|.-+|+.++         +.+++...+.. +.+-.++..+ .++++|+.||.++.+|..+++.  +..+..    +..
T Consensus       466 G~l~AiD~~TG---------~i~W~~~~~~p-~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~--LW~~~~~~~~~~~  532 (582)
T d1flga_         466 GSLRAMDPVSG---------KVVWEHKEHLP-LWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKE--LWKFQTGSGIVSP  532 (582)
T ss_dssp             EEEEEECTTTC---------CEEEEEEESSC-CCSCCEEETT-TEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCSC
T ss_pred             CeEEEEcCCCC---------cEEeecCCCCC-CccceeEEcC-CeEEEeCCCCeEEEEECCCCcE--eEEEECCCCcccc
Confidence            56777888876         56666654432 2221222334 7888899999999999999994  444432    222


Q ss_pred             cEEEEEEcCCC-CcEEEEEe
Q 010748          451 AVFSVAFSEDS-PFVLAIGG  469 (502)
Q Consensus       451 ~v~~~~~spd~-~~ll~sg~  469 (502)
                      +   +.|..+| +|+++.++
T Consensus       533 P---~ty~~~G~qYv~i~ag  549 (582)
T d1flga_         533 P---ITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             C---EEEEETTEEEEEEEEC
T ss_pred             C---EEEEECCEEEEEEEeC
Confidence            3   4566677 45444444

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.76  E-value=3  Score=36.90  Aligned_cols=143  Identities=9%  Similarity=0.088  Sum_probs=82.8

Q ss_pred             cEEEEeCCC-CeeeEeeccC-------CCCeEEEEE--cCCCC-cEEEEEeCCCcEEEEecCCCCC------ccceEeec
Q 010748          290 QVKIWDVAA-GKCNLTLEHH-------TDKVQAVAW--NHHSP-QILLSGSFDRSVVMKDARISTH------SGFKWAVA  352 (502)
Q Consensus       290 ~v~vwd~~~-~~~~~~~~~h-------~~~v~~l~~--~~~~~-~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~  352 (502)
                      +|.+|.+.. ...+..+...       ...+..+|+  ++... .++++....|.+..|.+.....      ....+...
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            577887742 2233333211       123566666  66543 3567777899999887743221      12234567


Q ss_pred             CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEEEcC--CCCCEE-EEEeCCC
Q 010748          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNP--LVPNLL-ATGSTDK  427 (502)
Q Consensus       353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp--~~~~~l-~t~s~dg  427 (502)
                      ..+..|.+..... .|+++-++..|..++........    ...+....+  ...-+-.|++-.  ++..+| +|.-.++
T Consensus       180 ~q~EGCVvDde~~-~LyisEE~~Giw~~~a~~~~~~~----~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         180 SQTEGMAADDEYG-SLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             SCEEEEEEETTTT-EEEEEETTTEEEEEESSTTSCSC----CEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CccceEEEeCCCC-cEEEecCccceEEEEeccCCCcc----ceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCC
Confidence            8899999998755 78888888777666665321100    111112111  345666776543  333344 4444578


Q ss_pred             cEEEEECCCC
Q 010748          428 MVKLWDLSNN  437 (502)
Q Consensus       428 ~i~vwd~~~~  437 (502)
                      +..|||....
T Consensus       255 ~f~vydr~~~  264 (353)
T d1h6la_         255 SYAIYERQGQ  264 (353)
T ss_dssp             EEEEEESSTT
T ss_pred             eEEEEecCCC
Confidence            8999998764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=1.6  Score=37.02  Aligned_cols=63  Identities=21%  Similarity=0.419  Sum_probs=33.8

Q ss_pred             CEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCc
Q 010748          418 NLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWDTLSDA  483 (502)
Q Consensus       418 ~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg-----~i~vwd~~~~~  483 (502)
                      .+++.|+.+     ..+..+|..+.+...+.......... +++.. +++ +++.||.++     .|.+||+.++.
T Consensus       197 ~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         197 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITVH-QGR-IYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eEEEecCccccccccceeeeeecceeeecccCccCcccce-EEEEE-CCE-EEEEecCCCCeecceEEEEECCCCE
Confidence            556665544     34677888776533322221111111 22222 455 677787654     37899998754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.48  E-value=4.8  Score=38.55  Aligned_cols=196  Identities=14%  Similarity=0.168  Sum_probs=107.8

Q ss_pred             EEEEEecCCcEEEEeC-CCCeeeEeeccCCC-----------CeEEEEEcCCC---CcEEEEEeCCCcEEEEecCCCCCc
Q 010748          281 ILASASADKQVKIWDV-AAGKCNLTLEHHTD-----------KVQAVAWNHHS---PQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       281 ~l~sgs~dg~v~vwd~-~~~~~~~~~~~h~~-----------~v~~l~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~  345 (502)
                      ++++++..+.|...|. .+|+.+.++.....           .-+.+++.+..   ..+++.++.|+.|.-.|.++++..
T Consensus        65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~  144 (596)
T d1w6sa_          65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV  144 (596)
T ss_dssp             EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence            3344455567777776 47887776642110           01234443321   246888999999999999988764


Q ss_pred             cceEeecCCe-eEEEeCCC-CCCEEEEEeC------CCcEEEEECCCCCCCCCCCCCccceEEeccC-------------
Q 010748          346 GFKWAVAADV-ESLAWDPH-AEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------------  404 (502)
Q Consensus       346 ~~~~~~~~~v-~~v~~~~~-~~~~~~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-------------  404 (502)
                      -......... ..+.-.|- -...++++..      .|.|+-||++++         +.++++....             
T Consensus       145 w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG---------~~~W~~~t~~~~~~~~~~~~~~~  215 (596)
T d1w6sa_         145 WKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTG---------EQVWRAYATGPDKDLLLASDFNI  215 (596)
T ss_dssp             EEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTC---------CEEEEEESSSCHHHHTBCTTTTT
T ss_pred             ccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCC---------cEEEEeeccCCcccccccccccc
Confidence            3221110000 00000110 0225666643      488999999998         5555543211             


Q ss_pred             -------------------------CCeeEEEEcCCCCCEEEEEeCC----------------CcEEEEECCCCCeeEEE
Q 010748          405 -------------------------KAVCTISYNPLVPNLLATGSTD----------------KMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       405 -------------------------~~v~~l~~sp~~~~~l~t~s~d----------------g~i~vwd~~~~~~~~~~  443 (502)
                                               ..-..+++.+.. .+++.+..+                ..|.-.|+.+++..-.+
T Consensus       216 ~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~-~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~  294 (596)
T d1w6sa_         216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY  294 (596)
T ss_dssp             TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccccCCCCceecCCCccccccccccCC-Ceeecccccccccccccccccccccccccccccccccccccc
Confidence                                     112234556654 555554332                34777888888854434


Q ss_pred             EecCCCC-------cEEEEE-EcCCCC--cEEEEEeCCCcEEEEECCCCcccc
Q 010748          444 SRNPKAG-------AVFSVA-FSEDSP--FVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       444 ~~~~~~~-------~v~~~~-~spd~~--~ll~sg~~dg~i~vwd~~~~~~~~  486 (502)
                      ....|..       .+.-+. ...++.  -+++.+..+|.+.++|..+++.+.
T Consensus       295 Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         295 QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence            4433321       111122 123332  257788899999999999999874

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=90.83  E-value=2.3  Score=38.78  Aligned_cols=156  Identities=12%  Similarity=0.088  Sum_probs=84.5

Q ss_pred             CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee-------ccCCCCeEEEEEcCCCCcEEEEEeCCC----
Q 010748          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDR----  332 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~~l~s~s~dg----  332 (502)
                      +-.+.|.+|+++|...+++++++..|-|..-. ..++.=..+       ......+.+|+++|..+..+..+..+.    
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~   87 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE   87 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCc
Confidence            34578999999999888998888776664432 233322222       123346889999999877777665321    


Q ss_pred             cEEEEecCCCCCccceEe----------ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec
Q 010748          333 SVVMKDARISTHSGFKWA----------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       333 ~i~iwd~~~~~~~~~~~~----------~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                      ...||-.......-....          .......+.++|..+..+++++.++.|.. ....+.. ...  .........
T Consensus        88 ~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~t-W~~--~~~~~~~~~  163 (427)
T d2ebsa1          88 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKT-WTN--VTSIPDAFT  163 (427)
T ss_dssp             CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSS-CEE--CTTSSCCCC
T ss_pred             CccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCce-eee--cccCccccc
Confidence            123443322221100000          11235678899988888888876665532 2222210 000  000000111


Q ss_pred             cCCCeeEEEEcCCCCCEEEEEe
Q 010748          403 HDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ....+..+.++|..+..|+.++
T Consensus       164 ~~~~~~~i~~~p~~~~~~y~~~  185 (427)
T d2ebsa1         164 NGIGYTSVIFDPERNGTIYASA  185 (427)
T ss_dssp             SSSCEEEEEECTTSTTCEEEEE
T ss_pred             CCccceEEEecccccceeeeee
Confidence            2334778899887656555443

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=87.59  E-value=6.8  Score=35.35  Aligned_cols=158  Identities=11%  Similarity=0.006  Sum_probs=84.7

Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---c----cceEeecCCeeEEEeCCCCCCEEEEEeCCC----c
Q 010748          308 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---S----GFKWAVAADVESLAWDPHAEHSFVVSLEDG----T  376 (502)
Q Consensus       308 h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~----~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg----~  376 (502)
                      -.+.|.+|+++|..+.++++++..|-|..-.= .++.   +    .........+.+|+++|.++..++++....    .
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~d-gG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~   88 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   88 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEEC-CCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence            46789999999999899999888766543221 1110   0    000112345889999998777777765321    1


Q ss_pred             EEEEECCCCCCCCCCCCCccceEEe---------ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE-EE---
Q 010748          377 IKGFDIRTAKSDPDSTSQQSSFTLH---------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-IA---  443 (502)
Q Consensus       377 v~i~d~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~-~~---  443 (502)
                      ..+|--..+        ...-..+.         .....+..+.++|..+..|+.++.++.|.. ....++.-. +.   
T Consensus        89 ~gi~~S~Dg--------G~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~~  159 (427)
T d2ebsa1          89 AAFYVSEDR--------GQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIP  159 (427)
T ss_dssp             CEEEEESST--------TSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTSS
T ss_pred             ccEEEeCCC--------CccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccCc
Confidence            234433322        11111111         012345678999987788877776655432 333332111 10   


Q ss_pred             EecCCCCcEEEEEEcCCCCcEEEE-EeCCCcEE
Q 010748          444 SRNPKAGAVFSVAFSEDSPFVLAI-GGSKGKLE  475 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~ll~s-g~~dg~i~  475 (502)
                      ........+..+.++|..+..|.+ +...+.|.
T Consensus       160 ~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy  192 (427)
T d2ebsa1         160 DAFTNGIGYTSVIFDPERNGTIYASATAPQGMY  192 (427)
T ss_dssp             CCCCSSSCEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred             ccccCCccceEEEecccccceeeeeeeecccce
Confidence            011123347889999876544443 33333443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=85.41  E-value=9.3  Score=32.00  Aligned_cols=166  Identities=14%  Similarity=0.112  Sum_probs=81.1

Q ss_pred             cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  366 (502)
                      .|+.+..|.....-...........+..+......   .+. -.|+.+..|.................|..++-..    
T Consensus        81 ~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~---~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~----  152 (273)
T d1jtdb_          81 KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA---SYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV----  152 (273)
T ss_dssp             ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTE---EEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS----
T ss_pred             eeeeeeccCCCcceeeccccccccceeEEeeeccc---ccc-cccccceecccCCCCceeeeccCCceEEEEeccc----
Confidence            48999999764322111111112334444443322   222 2488899997554333322223334455554432    


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      ..+....++.++.|-.....         ...........|..|+...   .+.+.-. ||.|+.|=........+  ..
T Consensus       153 ~~~~~~~~g~~~~~G~~~~g---------~~~~~~~~~~~v~~Is~G~---~h~~~l~-dG~v~~WG~n~~Gql~~--~~  217 (273)
T d1jtdb_         153 YTALAVKNGGVIAWGDNYFG---------QTTVPAEAQSGVDDVAGGI---FHSLALK-DGKVIAWGDNRYKQTTV--PT  217 (273)
T ss_dssp             SEEEEEETTEEEEEECCTTS---------TTSCCGGGSSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTCC--CG
T ss_pred             eeeeeecccceeEeecccCC---------cccccccccCCccceeccc---eeeEEEe-cCcEEEcCCCCCCccCC--Cc
Confidence            22333457889999765441         1111122345677776553   2333333 79999995543221111  11


Q ss_pred             CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~  479 (502)
                      .....|..|+.....  .++.  .+|.|..|=.
T Consensus       218 ~~~~~v~~I~~G~~~--~~~l--~~g~v~~WG~  246 (273)
T d1jtdb_         218 EALSGVSAIASGEWY--SLAL--KNGKVIAWGS  246 (273)
T ss_dssp             GGGSSCCEEEECSSC--EEEE--ETTEEEEEST
T ss_pred             cCCCCcEEEEeCcce--EEEE--ECCEEEEECC
Confidence            112345666654433  3443  3799999943

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.06  E-value=15  Score=33.38  Aligned_cols=54  Identities=15%  Similarity=0.224  Sum_probs=37.0

Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE--------eecCCeeEEEeCCC
Q 010748          309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDPH  363 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~v~~~~~  363 (502)
                      -...++|+|.|++ ++|++--..|.|++++..+........        ........++++|+
T Consensus        26 L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3467899999999 777665457999999877655332111        11345778999985