Citrus Sinensis ID: 010753

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
Protein Sequence
MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQLKADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHEQCSCPCGVVLENAAMVSYCPLP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccEEccHHHHHHHHccccccccccEEEEEcccccccccccccccccccEEEEEEEEEEccccEEEccHHHHHHccccccccccEEEEEEEEcccccEEEEEEccccccccccHHHHHHHHccccEEEccccEEEEEEccEEEEEEEEEEEccccEEEEEccEEEEEccccccccccccccccccccccccccccccccEEEEEEEcccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccEEcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHccccccccccEEEccHHHHHHHHHccccccccEEEEEEEEEEEccEEEEEEccccccccccEEEEEEcccccEEccHHHHHHccccccccccEEEEEEEcccccEEEEEccccccHcccccHHHHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEEcccccEEEEEEcEEEEccccccccccccccccccccccccccccccccccccccEEEccccccEcccccccEEEEEEEccccccccEEEccccEEccccccccccccccccEEEEEEcccccccccEEEEEEEccccEEEEEEEEEEEEccccccccEEcccccccccccEEEcccccccccHHHHHHHHHHccccEEEcccccEEEEEHHHHcccccccHccHHHcHHHHHHHHHHHcccccccccEEEEcHHHHcccccc
Coil and Loop (DISEMBL)
MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQLKADQEMQESLLAgggivfyhtlealpfqgsgdkiklppscftelsgqgafdkgplHFKLSVlhqegpsnmedgekesnrsthsgvleftadegfvglpphvwrnlfpsdtpnnsfvEVRYvrlpkgtyaklqpegigfaelpnqkAVLETSLRQhatlsqddvltVNYGELAYKLKVLelkpsssvsvletdievdivspddmsagtdqytlkpllfgksesgmveegKYVFYKFtidddtrkkivsgekraevrvdseidggdtsiyvsrhpllfptrhlhewsshdagskVVILSskdksvdvgtysigvygfkdmtKFQVLVTLEddsgrkvgqeatsssssiemdtvqcknckrfipsrsivLHEAYCSRHSvacqhagcgmvlrteeardhvhcdkcgqglqRREMEKHMKVFHeqcscpcgvvlenaamvsycplp
Flexible Loop (DISEMBL)
mdfelrrareklekeqkerkerarlklerekkakeeakKQREAIEAAQRSRRLDAIDAQLKADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSnmedgekesnrsTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQhatlsqddvltVNYGELAYKLKVlelkpsssvsvletdievdivspddmsagtdQYTLKPLlfgksesgmveEGKYVFykftidddtrkkivsgekraevrvdseidggdtsiyvSRHPLLFPTRHLHEWSSHDAGSKVVIlsskdksvdvgTYSIGvygfkdmtKFQVLVTleddsgrkvgqeatsssssiemdtvqCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHEQCSCPCGVVLENAAMVSYCPLP
Low Complexity Region (SEG)
MDFelrrareklekeqkerkerarlklerekkakeeakkqreaieaaqRSRRLDAIDAQLKADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHEQCSCPCGVVLENAAMVSYCPLP
Disordered region (IsUnstruct)
*********************************************************************LLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSV***********************VLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVS******GTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDDTRKKIV********RVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTL**********************TVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHEQCSCPCGVVLENAAMVSYC***
Disordered Region (DISOPRED)
**********************************************************************LAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVS**************************************************************GGDTSI********************DAG**VVILS*KDKSVDVGTYSIGVYGFKDMTKFQ******************************CKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ*REMEKHMKVFHEQCSCPCGVVLENAAMVSYCPLP
Disordered Region (DISEMBL)
*********************RARLKLER********************SRRLDAIDAQLKADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGP**************HSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDS*****************DTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHEQCSCPCGVVLENAAMVSYCPLP
Disordered Region (DISPRO)
****LRRAREKLEKEQKERKERARLKLEREKKAKE******EAIEAAQRSRRLDAIDAQLKADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSPDDMSA************************YVFYKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGR**************MDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHEQCSCPCGVVLENAAMVSYCPLP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRRLDAIDAQLKADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHEQCSCPCGVVLENAAMVSYCPLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	502	2.2.26 [Sep-21-2011]
Q55BK0	330	Ubiquitin fusion degradat	yes	no	0.316	0.481	0.377	2e-25
Q92890	307	Ubiquitin fusion degradat	no	no	0.302	0.495	0.4	8e-25
Q9ES53	307	Ubiquitin fusion degradat	yes	no	0.302	0.495	0.4	9e-25
P70362	307	Ubiquitin fusion degradat	yes	no	0.302	0.495	0.4	9e-25
Q9VTF9	316	Ubiquitin fusion degradat	yes	no	0.302	0.481	0.358	1e-21
P53044	361	Ubiquitin fusion degradat	yes	no	0.302	0.421	0.364	2e-21
O42915	342	Ubiquitin fusion degradat	yes	no	0.318	0.467	0.342	1e-18
Q19584	342	Ubiquitin fusion degradat	yes	no	0.304	0.447	0.345	4e-16

>sp|Q55BK0|UFD1_DICDI Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1

 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 101/183 (55%), Gaps = 24/183 (13%)

Query: 80  HTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNR 139
           H+LE      SG KI LPPS    LS            +L++ +   P   E     S +
Sbjct: 42  HSLE------SGGKILLPPSALNALS------------RLNIQY---PMLFEISNPISGK 80

Query: 140 STHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFA 199
            +H GVLEF A+EG   LP  + +NL         F++++   L KGT+ K+QP    F 
Sbjct: 81  KSHCGVLEFIAEEGICYLPLWMMQNL---QLKEGEFIDIKNATLAKGTFVKIQPRTSNFI 137

Query: 200 ELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVS 259
           ++ N KAVLE SLR+ ATL++DD + ++Y    Y LKV+ELKP++++S++E D+ VD   
Sbjct: 138 DISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAP 197

Query: 260 PDD 262
           P D
Sbjct: 198 PMD 200

Functions at a post-ubiquitation step in the ubiquitin fusion degradation (UFD) pathway.
Dictyostelium discoideum (taxid: 44689)

>sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3

 Score =  115 bits (288), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 18/170 (10%)

Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G KI +PPS   +LS        P+ FKL+              K S+R TH GVLEF A
Sbjct: 43  GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVA 87

Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
           DEG   LP  + +NL   +      V+V  V L   TY+K QP+   F ++ N KAVLE 
Sbjct: 88  DEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLEN 144

Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSP 260
           +LR  A L+  DV+ +NY E  Y+L+V+E KP  +VS++E D+ VD  +P
Sbjct: 145 ALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAP 194

Essential component of the ubiquitin-dependent proteolytic pathway which degrades ubiquitin fusion proteins. The ternary complex containing UFD1L, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1L-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope. It may be involved in the development of some ectoderm-derived structures.

Homo sapiens (taxid: 9606)

>sp|Q9ES53|UFD1_RAT Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1

 Score =  115 bits (288), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 18/170 (10%)

Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G KI +PPS   +LS        P+ FKL+              K S+R TH GVLEF A
Sbjct: 43  GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVA 87

Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
           DEG   LP  + +NL   +      V+V  V L   TY+K QP+   F ++ N KAVLE 
Sbjct: 88  DEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLEN 144

Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSP 260
           +LR  A L+  DV+ +NY E  Y+L+V+E KP  +VS++E D+ VD  +P
Sbjct: 145 ALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAP 194

Essential component of the ubiquitin-dependent proteolytic pathway which degrades ubiquitin fusion proteins. The ternary complex containing UFD1L, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1L-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope. It may be involved in the development of some ectoderm-derived structures.

Rattus norvegicus (taxid: 10116)

>sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=2

 Score =  115 bits (288), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 18/170 (10%)

Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G KI +PPS   +LS        P+ FKL+              K S+R TH GVLEF A
Sbjct: 43  GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVA 87

Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
           DEG   LP  + +NL   +      V+V  V L   TY+K QP+   F ++ N KAVLE 
Sbjct: 88  DEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLEN 144

Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSP 260
           +LR  A L+  DV+ +NY E  Y+L+V+E KP  +VS++E D+ VD  +P
Sbjct: 145 ALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAP 194

Essential component of the ubiquitin-dependent proteolytic pathway which degrades ubiquitin fusion proteins. The ternary complex containing UFD1L, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1L-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope (By similarity). It may be involved in the development of some ectoderm-derived structures.

Mus musculus (taxid: 10090)

>sp|Q9VTF9|UFD1_DROME Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 18/170 (10%)

Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G KI +PPS    L+      + P+ FKL+ + +             +RS+H+GVLEF A
Sbjct: 40  GGKIIMPPSALDTLTRLNV--EYPMLFKLTNVKK-------------SRSSHAGVLEFVA 84

Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
           DEG   LP  +  NL   +      + +  V LP  T++K QP    F ++ N KAVLE 
Sbjct: 85  DEGKCYLPHWMMENLLLGE---GDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLEN 141

Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSP 260
           +LR  A L++ DV+ + Y +  Y+L VLE KP ++VS++E D+ V+  +P
Sbjct: 142 ALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAP 191

Functions at a post-ubiquitation step in the ubiquitin fusion degradation (UFD) pathway.

Drosophila melanogaster (taxid: 7227)

>sp|P53044|UFD1_YEAST Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 21/173 (12%)

Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G KI LPPS  ++LS      + P+ FKL+               E+ R TH GVLEF A
Sbjct: 45  GGKIFLPPSALSKLSMLNI--RYPMLFKLTA-------------NETGRVTHGGVLEFIA 89

Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
           +EG V LP  +   L        S +++    +P G + KL+P+ + F ++ + KAVLE 
Sbjct: 90  EEGRVYLPQWMMETL---GIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLEN 146

Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKP---SSSVSVLETDIEVDIVSP 260
            LR  +TL+ DDV+ ++Y    +K+K+LE+KP   S S+ V+ETD+  D   P
Sbjct: 147 VLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPP 199

Functions at a post-ubiquitation step in the ubiquitin fusion degradation (UFD) pathway. Has a role in the endoplasmic reticulum-associated degradation (ERAD) pathway. Required for the proteasome-dependent processing/activation of MGA2 and SPT23 transcription factors leading to the subsequent expression of OLE1. Has an additional role in the turnover of OLE1 where it targets ubiquitinated OLE1 and other proteins to the ERAD.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O42915|UFD1_SCHPO Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 21/181 (11%)

Query: 83  EALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTH 142
           E  P    G K+ LPPS                  KLS L+   P   +   + + + TH
Sbjct: 47  EERPNVNYGGKVILPPSALE---------------KLSRLNVSYPMLFDFENEAAEKKTH 91

Query: 143 SGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELP 202
            GVLEF A+EG V LP   W     S  P +  V V    + +G+Y KLQP+ + F ++ 
Sbjct: 92  GGVLEFIAEEGRVYLP--YWMMTTLSLEPGD-LVRVINTDIAQGSYVKLQPQSVNFLDIT 148

Query: 203 NQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSS---VSVLETDIEVDIVS 259
           + +AVLE +LR  +TL++ D+  + Y +  Y++KV++++P  S   VSV+ETD+ VD   
Sbjct: 149 DHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDP 208

Query: 260 P 260
           P
Sbjct: 209 P 209

Functions at a post-ubiquitation step in the ubiquitin fusion degradation (UFD) pathway. It is required for vegetative growth.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 18/171 (10%)

Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G KI LP S    L         P+ FKL+        NM        R TH GVLEF+A
Sbjct: 47  GGKILLPSSALNLLMQYNI--PMPMLFKLT--------NMA-----VQRVTHCGVLEFSA 91

Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
            EG   LP  + + L   D      + +    LPK T+AKL+P  + F  + N KAVLE 
Sbjct: 92  PEGQAILPLWMMQQLGLDD---GDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEV 148

Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSPD 261
            LR++A L+++D +  +Y     +  V++LKP++SV ++E D+ +D   P+
Sbjct: 149 ELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPE 199

Functions at a post-ubiquitation step in the ubiquitin fusion degradation (UFD) pathway.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
225447095	569	PREDICTED: uncharacterized protein LOC10	0.996	0.878	0.699	0.0
255576913	570	ubiquitin fusion degradaton protein, put	0.994	0.875	0.694	0.0
224131638	567	predicted protein [Populus trichocarpa]	0.992	0.878	0.681	0.0
449453521	571	PREDICTED: uncharacterized protein LOC10	0.998	0.877	0.681	0.0
356554447	573	PREDICTED: uncharacterized protein LOC10	0.998	0.874	0.665	0.0
356501298	573	PREDICTED: uncharacterized protein LOC10	0.998	0.874	0.681	0.0
357493375	571	Ubiquitin fusion degradation protein-lik	0.998	0.877	0.671	0.0
164605542	570	CM0545.430.nc [Lotus japonicus]	0.998	0.878	0.663	0.0
11139266	574	PRLI-interacting factor K [Arabidopsis t	0.974	0.851	0.633	0.0
18414447	561	ubiquitin fusion degradation UFD1 family	0.974	0.871	0.633	0.0

>gi|225447095|ref|XP_002273297.1| PREDICTED: uncharacterized protein LOC100246609 [Vitis vinifera]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/505 (69%), Positives = 424/505 (83%), Gaps = 5/505 (0%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELRRAREKLE+EQKERKE+ARLKLER++K+K+EA +QR+AIEA QRSRRLDA +AQL
Sbjct: 1   MDFELRRAREKLEREQKERKEKARLKLERDRKSKQEAARQRDAIEAVQRSRRLDAAEAQL 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS 120
           KADQ+M+ESLLAG G++F+  LEA+ +QG+GDKIKLPPSCF ELS QGAFDKGPL+F LS
Sbjct: 61  KADQQMEESLLAGRGVMFFRILEAVAYQGNGDKIKLPPSCFKELSDQGAFDKGPLYFGLS 120

Query: 121 VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRY 180
           V+HQEG  + +  E ++ R+TH+GVLEFTA+EG V LPPHVW NLFP +T  +  VEVRY
Sbjct: 121 VVHQEGSLDTKAAETQNQRTTHAGVLEFTAEEGSVSLPPHVWSNLFPEETLKSPLVEVRY 180

Query: 181 VRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLEL 240
           + LPKGTYAKLQ +GIGF+++PN KAVLET LRQHATLSQDDVL VN+GEL YKLKVLEL
Sbjct: 181 LWLPKGTYAKLQADGIGFSDIPNHKAVLETRLRQHATLSQDDVLIVNHGELTYKLKVLEL 240

Query: 241 KPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDD 300
           KPSSS+SVLETDIEVDIV PD +S  T+Q  LKPL FGKSE+GMVEEG YV+YKF++D D
Sbjct: 241 KPSSSISVLETDIEVDIVGPDSVSGRTNQQFLKPLEFGKSETGMVEEGNYVYYKFSMDGD 300

Query: 301 TRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKD 360
               I SG+ R EV++++E DGGDT +Y+SRHPL+FP RH HEWSSHD GSK +ILS KD
Sbjct: 301 ILGIIASGDARIEVKIEAESDGGDTDLYISRHPLIFPNRHQHEWSSHDVGSKTLILSHKD 360

Query: 361 KSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKRFI 420
           +S++ GT+SIGVYGFK  TK+Q+ V+++D+   KVGQ+AT SSSS+E+DTV+C+NCK +I
Sbjct: 361 QSLEAGTFSIGVYGFKGTTKYQISVSVQDNLNHKVGQQAT-SSSSMEVDTVECRNCKHYI 419

Query: 421 PSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHE 480
           PSRSI LHEAYCSRH++ C HAGCG+VLR  EA++HVHCDKCGQ LQR EMEKHMKVFHE
Sbjct: 420 PSRSIALHEAYCSRHNIICPHAGCGVVLRVAEAKNHVHCDKCGQALQRGEMEKHMKVFHE 479

Query: 481 QCSCPCGVVLENAAMV----SYCPL 501
              CPCGVVLE   MV    S CPL
Sbjct: 480 PLHCPCGVVLEKELMVQHQASACPL 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576913|ref|XP_002529342.1| ubiquitin fusion degradaton protein, putative [Ricinus communis] gi|223531213|gb|EEF33059.1| ubiquitin fusion degradaton protein, putative [Ricinus communis]

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/507 (69%), Positives = 421/507 (83%), Gaps = 8/507 (1%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELRRAREKLEKEQK+RKE+ARL+LERE+KAK+EAKKQREAIEAAQRSRRLDAI AQ+
Sbjct: 1   MDFELRRAREKLEKEQKDRKEKARLRLERERKAKDEAKKQREAIEAAQRSRRLDAIQAQI 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS 120
           KAD++MQE+L+AG GI F   LEA+PFQG+GDKIKLP SCFTELS QGAFDKGP++F+LS
Sbjct: 61  KADEQMQENLIAGRGIAFSCILEAVPFQGNGDKIKLPSSCFTELSDQGAFDKGPIYFQLS 120

Query: 121 VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRY 180
           V+HQEG S M+  + E  + THSGVLEFTA+EG VGLPPHVW NLFPS       VE+RY
Sbjct: 121 VIHQEGSSEMKTTDSE-QKITHSGVLEFTAEEGSVGLPPHVWNNLFPSGPLEVPLVEIRY 179

Query: 181 VRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLEL 240
             LPKGTYAKLQPE +GF++LPN KA+LET+LRQHATLSQ DV+TVN+G L YKL+VLEL
Sbjct: 180 RWLPKGTYAKLQPEVVGFSDLPNHKAILETTLRQHATLSQGDVITVNHGILTYKLRVLEL 239

Query: 241 KPSSSVSVLETDIEVDIVSPDDMSAG--TDQYTLKPLLFGKSESGMVEEGKYVFYKFTID 298
           KPSSSVSVLETDIEVDIV PD  S     +Q+ LKPL  G  ESGMVEEG Y +YKF+ID
Sbjct: 240 KPSSSVSVLETDIEVDIVGPDSTSVSETANQHVLKPLTVGTLESGMVEEGNYEYYKFSID 299

Query: 299 DDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSS 358
           ++T +KI S + R EV++D+E   GDT +YVS+HPL+FPTRH HEWSSHD GSKV+ILSS
Sbjct: 300 NETWEKIASDDIRVEVKIDAETGSGDTDLYVSKHPLIFPTRHQHEWSSHDMGSKVLILSS 359

Query: 359 KDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKR 418
           KDK++ VG YSIGVYGFK  TK++ L++++D++  K GQ+A  SSSS+E+DTV+C+NCK 
Sbjct: 360 KDKNLGVGIYSIGVYGFKGTTKYKALLSVQDNNNLKTGQQA-GSSSSMEVDTVECRNCKH 418

Query: 419 FIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVF 478
           FIP+RSI LHEAYCSRH++ CQHAGCG+VLRTEEA++H+HC+KCGQ   + EMEKHMK+F
Sbjct: 419 FIPNRSIALHEAYCSRHNIVCQHAGCGIVLRTEEAKNHMHCEKCGQAFLKGEMEKHMKIF 478

Query: 479 HEQCSCPCGVVLENAAMV----SYCPL 501
           HE   CPCGVVLE   MV    S CPL
Sbjct: 479 HEPLQCPCGVVLEKEQMVQHQASACPL 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131638|ref|XP_002321140.1| predicted protein [Populus trichocarpa] gi|222861913|gb|EEE99455.1| predicted protein [Populus trichocarpa]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/505 (68%), Positives = 419/505 (82%), Gaps = 7/505 (1%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELRRAREKLEKEQKERKERA+L+L+RE+KAKEEA+KQREAIEA  RSRRLDAI AQL
Sbjct: 1   MDFELRRAREKLEKEQKERKERAKLRLDRERKAKEEARKQREAIEAVHRSRRLDAIQAQL 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS 120
           K D++MQE+LLAG GIVF   LEA+ FQGSGDKIKLPPSCFT LS QGAFDKGPL+F+LS
Sbjct: 61  KVDEQMQENLLAGRGIVFSRILEAVSFQGSGDKIKLPPSCFTGLSDQGAFDKGPLYFQLS 120

Query: 121 VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRY 180
           V+HQEG S M D + + + +THSGVLEFTA+EG VGLPPHVW NLFP D+P    +EV+Y
Sbjct: 121 VVHQEGSSEMIDTDSKQS-TTHSGVLEFTAEEGSVGLPPHVWSNLFPIDSPKAPLIEVQY 179

Query: 181 VRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLEL 240
           V LPKGTYAKLQP+ +GF++LPN KAVLETSLRQHATLS+ DV+TVN+G L YKL+VLEL
Sbjct: 180 VWLPKGTYAKLQPDVVGFSDLPNHKAVLETSLRQHATLSEGDVITVNHGILTYKLQVLEL 239

Query: 241 KPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDD 300
           +PSSSVSVLETDIEVD+V PD     + Q  LKPL+FGK+ESGMVEEG Y ++KF+ID+D
Sbjct: 240 RPSSSVSVLETDIEVDVVGPDS-GLESSQPVLKPLIFGKAESGMVEEGNYNYFKFSIDND 298

Query: 301 TRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKD 360
              +I + + R EVR+++E + GDT +Y+S+HPL+FPTRH HEWSSHD GSKV+IL SKD
Sbjct: 299 IWDRIAAEDVRVEVRIEAETNNGDTDLYMSKHPLMFPTRHQHEWSSHDIGSKVLILGSKD 358

Query: 361 KSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKRFI 420
           K++ +G YSIGV+GFK  TK+ V V+++++S  KVGQ+A  SSSS+++D V+C+NCK FI
Sbjct: 359 KNLGMGAYSIGVHGFKGTTKYNVAVSVQENSNHKVGQQA-GSSSSMDIDAVECRNCKHFI 417

Query: 421 PSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHE 480
           PSRSI LHEA+CSRH++ C H GCG+VLR EE+++H+HCDKCGQ  Q+ EMEKHMKVFHE
Sbjct: 418 PSRSIALHEAFCSRHNIVCSHPGCGIVLRIEESKNHLHCDKCGQAFQQGEMEKHMKVFHE 477

Query: 481 QCSCPCGVVLENAAMV----SYCPL 501
              CPCGVVLE   MV    S CP+
Sbjct: 478 PLQCPCGVVLEKNQMVQHQASICPV 502

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453521|ref|XP_004144505.1| PREDICTED: uncharacterized protein LOC101203089 [Cucumis sativus] gi|449493141|ref|XP_004159204.1| PREDICTED: uncharacterized LOC101203089 [Cucumis sativus]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/506 (68%), Positives = 410/506 (81%), Gaps = 5/506 (0%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELRRAREKLEKEQKERKE AR K+ERE+KAKEEA+K REAIEAAQ SRRLDA +A++
Sbjct: 1   MDFELRRAREKLEKEQKERKEMARRKVERERKAKEEARKLREAIEAAQVSRRLDAAEARI 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS 120
           KADQ M+E+LLAG GI FY  LEA+P+QG+GDKIKL PS FTELS QGAFDKGP++F+LS
Sbjct: 61  KADQLMEETLLAGRGISFYRILEAIPYQGNGDKIKLSPSSFTELSDQGAFDKGPVYFQLS 120

Query: 121 VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRY 180
           V+HQEGPSN E  +++++R+THSGVLEFTADEGFV LPPHVW+NLF  ++     VEVRY
Sbjct: 121 VVHQEGPSNSEVTKEKTHRATHSGVLEFTADEGFVELPPHVWQNLFLDESLTKPLVEVRY 180

Query: 181 VRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLEL 240
           V LPKGTYAKLQPEG+GF +LPN KA+LETSLRQHATLSQ D+LTV YGEL YKL VLEL
Sbjct: 181 VWLPKGTYAKLQPEGLGFLDLPNHKAILETSLRQHATLSQGDILTVVYGELTYKLNVLEL 240

Query: 241 KPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDD 300
           KPSSS+SVLETDIEVDIV PD  S   DQ  LK L F K ESGMVEEG Y +YKF+ID+D
Sbjct: 241 KPSSSISVLETDIEVDIVGPDSPSGAMDQRVLKLLTFKKHESGMVEEGCYSYYKFSIDND 300

Query: 301 TRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKD 360
               I SG  R EV+++ E + GDT+IY+S+HPL+FP++H H WSSHD GSKV+IL+SKD
Sbjct: 301 IWDIISSGNARVEVKLEVETNEGDTNIYISKHPLIFPSQHQHSWSSHDIGSKVLILNSKD 360

Query: 361 KSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRK-VGQEATSSSSSIEMDTVQCKNCKRF 419
           K+   GTYSIGVYGFK  +K+Q+ V+ E+ +  K VG++  SSS+S   DTV+C+NCK +
Sbjct: 361 KNFGPGTYSIGVYGFKGTSKYQIQVSFEEATNHKVVGKQEVSSSTSTHQDTVECRNCKHY 420

Query: 420 IPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFH 479
           IPSR+I LHEAYCSRH++ CQHA CG+VLR EEAR+HVHC+KCGQ LQ+ EMEKH KVFH
Sbjct: 421 IPSRTIALHEAYCSRHNIVCQHADCGVVLRVEEARNHVHCEKCGQALQKSEMEKHDKVFH 480

Query: 480 EQCSCPCGVVLENAAMV----SYCPL 501
               C CG+VLE   MV    S CPL
Sbjct: 481 VPLKCACGLVLEKEEMVRHQASVCPL 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554447|ref|XP_003545558.1| PREDICTED: uncharacterized protein LOC100779441 [Glycine max]

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/508 (66%), Positives = 412/508 (81%), Gaps = 7/508 (1%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELRRAREKLEKEQ+ERKERARLKL++EKKAKEEA+KQ+EAIEA QRSRR+DA  AQL
Sbjct: 1   MDFELRRAREKLEKEQRERKERARLKLQKEKKAKEEAQKQKEAIEAVQRSRRIDAAQAQL 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDK--GPLHFK 118
           KA ++MQESLLAG GIVFY  LEA   +G GDKIKLPPSCF ELS QG FDK  GPL+F+
Sbjct: 61  KAARQMQESLLAGRGIVFYRLLEAFFCEGGGDKIKLPPSCFAELSEQGTFDKRQGPLYFQ 120

Query: 119 LSVLHQEGPSNMEDGEK-ESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
           LS++H+E  S+++  +K +  R+THSGVLEFTADEG VGLPPHVW NLF   TP    VE
Sbjct: 121 LSLVHEESTSSIQTTDKVKQGRTTHSGVLEFTADEGSVGLPPHVWNNLFSEGTPKPPLVE 180

Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
           VRYV LPKGTYAKLQPE +GF++LPN KA+LET LRQHATLSQ D+LTVNYG+LAY+L+V
Sbjct: 181 VRYVWLPKGTYAKLQPEKVGFSDLPNHKAILETCLRQHATLSQGDILTVNYGQLAYELRV 240

Query: 238 LELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTI 297
           LELKPSSSVSVLETDIEVDIV PD  S  TD + L PL FG  + G +EEGK+V+YKF+I
Sbjct: 241 LELKPSSSVSVLETDIEVDIVDPDTSSQKTDGHVLMPLEFGMPQIGTIEEGKFVYYKFSI 300

Query: 298 DDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILS 357
           D+   +++  G    EV+++SE DGGDT I++SRHP++FPTRH HEWSSHD GSK +ILS
Sbjct: 301 DNVIWEQLSPGNSCVEVKLESETDGGDTDIFISRHPVIFPTRHRHEWSSHDIGSKTLILS 360

Query: 358 SKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCK 417
           S DK++  GTYSIGVYGFK +T +++ V ++D+  + VGQ+A+SS SS+E+DT QC+NCK
Sbjct: 361 SNDKNMGAGTYSIGVYGFKGITNYKISVMVQDNFNQNVGQQASSSMSSMELDTEQCRNCK 420

Query: 418 RFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKV 477
            +IP R+I LHEAYCSRH+V CQHAGCG+VLR EE+++H+HC +CGQ  Q+ E+EKHMKV
Sbjct: 421 HYIPGRTIALHEAYCSRHNVVCQHAGCGVVLRIEESKNHIHCGRCGQAFQQAELEKHMKV 480

Query: 478 FHEQCSCPCGVVLENAAMV----SYCPL 501
           FHE   CPCG++LE   MV    S CPL
Sbjct: 481 FHEPLHCPCGIILEKEQMVEHQASVCPL 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501298|ref|XP_003519462.1| PREDICTED: uncharacterized protein LOC100777384 [Glycine max]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/508 (68%), Positives = 421/508 (82%), Gaps = 7/508 (1%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELRRAREKLEKEQ+ERKERARLKL +EKKAKEEA+KQ+EAIEA QRSRR+DA  AQL
Sbjct: 1   MDFELRRAREKLEKEQRERKERARLKLLKEKKAKEEAQKQKEAIEAVQRSRRIDAAQAQL 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKG--PLHFK 118
           KADQ+MQE+LLAG GIVFY  LEA  ++G+GDKIKLPPSCF ELS QG FDKG  PL+F+
Sbjct: 61  KADQQMQENLLAGRGIVFYRLLEAFFYEGAGDKIKLPPSCFAELSEQGTFDKGQGPLYFQ 120

Query: 119 LSVLHQEGPSNMEDGEKE-SNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
           LS++H+E  S+++  +KE   R+THSGVLEFTADEG VGLPPHVW NLF   T     VE
Sbjct: 121 LSLVHEESTSSIQTTDKEKQGRTTHSGVLEFTADEGSVGLPPHVWNNLFSEGTLKAPLVE 180

Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
           VRYV LPKGTYAKLQPE +GF++LPN KA+LET LRQHATLSQ D+LTVNYGELAYKL+V
Sbjct: 181 VRYVWLPKGTYAKLQPERVGFSDLPNHKAILETCLRQHATLSQGDILTVNYGELAYKLRV 240

Query: 238 LELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTI 297
           LELKPSSSVSVLETDIEVDIV PD  S  TD++ L PL+FG S+ G VEEGK+V+YKF++
Sbjct: 241 LELKPSSSVSVLETDIEVDIVDPDTSSEKTDEHVLMPLVFGMSQIGTVEEGKFVYYKFSV 300

Query: 298 DDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILS 357
           D+ T +K+ SG    E++++SE DGGDT +++SRHPL+FPTRH HEWSSHD GSK +ILS
Sbjct: 301 DNVTWEKLSSGNSCVELKLESETDGGDTDLFISRHPLIFPTRHQHEWSSHDIGSKTLILS 360

Query: 358 SKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCK 417
           SKDK++  GTYSIGVYGFK +T++++ V ++D+  + VGQ+A+SS SS+E+DT QC+NCK
Sbjct: 361 SKDKNMGAGTYSIGVYGFKGITRYKISVVVQDNFNQNVGQQASSSVSSMELDTEQCRNCK 420

Query: 418 RFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKV 477
            +IPSR+I LHEAYCSRH+V CQHAGCG+VLR EE+++H+HCD+C Q  Q+ E+EKHMKV
Sbjct: 421 HYIPSRTIALHEAYCSRHNVVCQHAGCGVVLRIEESKNHIHCDRCDQAFQQVELEKHMKV 480

Query: 478 FHEQCSCPCGVVLENAAMV----SYCPL 501
           FHE   CPCG++LE   MV    S CPL
Sbjct: 481 FHEPLHCPCGIILEKEQMVEHQASVCPL 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493375|ref|XP_003616976.1| Ubiquitin fusion degradation protein-like protein [Medicago truncatula] gi|355518311|gb|AES99934.1| Ubiquitin fusion degradation protein-like protein [Medicago truncatula]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/506 (67%), Positives = 418/506 (82%), Gaps = 5/506 (0%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELRRAREK+EKEQKERKE+ARLKL++EKKAKEEA+ QREAIEAAQRSRR+DA +AQL
Sbjct: 1   MDFELRRAREKIEKEQKERKEKARLKLQKEKKAKEEARIQREAIEAAQRSRRIDAAEAQL 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS 120
           KADQ+MQE+L+ G GIVFY  LEA+P+QGSGDKIKLPPSCFT+LS  GA DKGP++F+LS
Sbjct: 61  KADQQMQENLIVGRGIVFYRLLEAVPYQGSGDKIKLPPSCFTDLSDHGALDKGPMYFQLS 120

Query: 121 VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNS-FVEVR 179
           + H+EG S+ +D +KE   +THSGVLEFTADEG VGLPPHVW NLF       S  +EVR
Sbjct: 121 LTHKEGSSSTQDTDKEKMGTTHSGVLEFTADEGSVGLPPHVWNNLFSEGCIMESPLIEVR 180

Query: 180 YVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLE 239
           YV LPKGTYAKLQPE  GF++LPN KA+LETSLRQHATLSQ D+ TVNYG+L +KL+VLE
Sbjct: 181 YVWLPKGTYAKLQPERGGFSDLPNHKAILETSLRQHATLSQGDIFTVNYGKLEHKLRVLE 240

Query: 240 LKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDD 299
           LKPSSSVSVLETDIEVDIV P D S  TDQ+ L P +FG S++G V+EGK+V+YKF+ID+
Sbjct: 241 LKPSSSVSVLETDIEVDIVDPIDFSEQTDQHVLIPTVFGTSQTGTVDEGKFVYYKFSIDN 300

Query: 300 DTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSK 359
            T ++I SG    EV+++SE + GDT +++SRHPL+FPTRH HEWSSHD GSK +ILSSK
Sbjct: 301 GTWERISSGSSIIEVKLESETNEGDTDLFISRHPLIFPTRHQHEWSSHDIGSKTLILSSK 360

Query: 360 DKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKRF 419
           DK++  GTYSIGV GFK +TK+++ V ++D+  +K+GQ+A+SS SS+ +DT QC+NCK +
Sbjct: 361 DKNLGSGTYSIGVNGFKGLTKYKLSVLIQDNFNQKLGQQASSSMSSMGLDTEQCRNCKHY 420

Query: 420 IPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFH 479
           IPSR+I LHEAYCSRH+V CQH GCG+VLR EE+++H+HC +CGQ  Q+ E+EKHMKVFH
Sbjct: 421 IPSRTIALHEAYCSRHNVTCQHEGCGVVLRIEESKNHIHCGRCGQAFQQAELEKHMKVFH 480

Query: 480 EQCSCPCGVVLENAAMV----SYCPL 501
           E   CPCG+VLE   MV    S CPL
Sbjct: 481 EPLQCPCGIVLEKEKMVEHQASVCPL 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164605542|dbj|BAF98608.1| CM0545.430.nc [Lotus japonicus]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/505 (66%), Positives = 416/505 (82%), Gaps = 4/505 (0%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELRRAREKLEKEQKERKE+ARL  ++E+KAKE+A+KQREAIEAAQRSRR+DA +AQL
Sbjct: 1   MDFELRRAREKLEKEQKERKEKARLIQQKERKAKEDARKQREAIEAAQRSRRIDAAEAQL 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS 120
           KA+Q+MQESL+AG GIVFY  LEA+PFQGSGDKIKLPPSCFT+LS  GA DKGP++F+LS
Sbjct: 61  KAEQQMQESLIAGRGIVFYRLLEAVPFQGSGDKIKLPPSCFTDLSDNGALDKGPMYFQLS 120

Query: 121 VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRY 180
           ++H EG S +E  +KE   +THSGVLEFTADEG VGLPPHVW NLF   + N+  VEVRY
Sbjct: 121 LVHVEGTSGIEGADKEKQGTTHSGVLEFTADEGSVGLPPHVWNNLFSEVSVNSPLVEVRY 180

Query: 181 VRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLEL 240
           V LPKGTYAKLQPE  GF++LPN KA+LETSLRQHATLSQ D+LTVNYGELAYKL+VLEL
Sbjct: 181 VWLPKGTYAKLQPERAGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAYKLRVLEL 240

Query: 241 KPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDD 300
           KPS+SVSVLETDIEVDIV  D     TDQ+ L P++FG  + G VEEGK+V+YKF+ID+ 
Sbjct: 241 KPSTSVSVLETDIEVDIVDSDTSLEKTDQHVLIPIVFGMPQIGTVEEGKFVYYKFSIDNG 300

Query: 301 TRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKD 360
           T +KI +G    E++++SE DGGDT +++SRHPL+FPTRH HEWSSHD GSK +ILSSKD
Sbjct: 301 TWEKISTGSSSIELKLESETDGGDTDLFISRHPLIFPTRHQHEWSSHDIGSKTLILSSKD 360

Query: 361 KSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKRFI 420
           K++   TYS+G++GF+ + K+++ V ++D+  +K+GQ+ +SS SS E DT +C+NCK +I
Sbjct: 361 KNLSAETYSVGIFGFRGIAKYKLSVMIQDNLDQKLGQQTSSSISSTETDTEKCRNCKHYI 420

Query: 421 PSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHE 480
           P+R+I LHEAYC RH++ CQH GCG+VLR EE+++HVHCD+CGQ  Q+ E+EKHMKVFHE
Sbjct: 421 PTRTIALHEAYCVRHNIVCQHVGCGVVLRIEESKNHVHCDRCGQAFQQVELEKHMKVFHE 480

Query: 481 QCSCPCGVVLENAAMV----SYCPL 501
              CPCG++LE   MV    S CPL
Sbjct: 481 PLRCPCGIILEKEQMVEHQASVCPL 505

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11139266|gb|AAG31651.1| PRLI-interacting factor K [Arabidopsis thaliana]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/507 (63%), Positives = 405/507 (79%), Gaps = 18/507 (3%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELR A+EKLE+EQ+ERK+RA+LKLEREKK+KE A KQREAIEAAQR+RRLDAI+AQ+
Sbjct: 14  MDFELRSAKEKLEREQRERKQRAKLKLEREKKSKEAAIKQREAIEAAQRARRLDAIEAQI 73

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS 120
           KADQ MQESL++G GIVF    +A+ FQG+GDKIKLPPSCFTELS QGAFDKGPL+F+LS
Sbjct: 74  KADQHMQESLVSGDGIVFERVFQAVSFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFELS 133

Query: 121 VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNN-SFVEVR 179
           V+             ++ ++THSGVLEFTA++G +GLPPHVW NLF +  P +   VE+R
Sbjct: 134 VVDH----------ADNKKTTHSGVLEFTAEDGTIGLPPHVWSNLFSTHDPMDVPLVEIR 183

Query: 180 YVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLE 239
           Y+RLPKG+YAKLQP+ +GF++LPN KA+LET LRQHATLS DDVL VNYG+++YKL+VLE
Sbjct: 184 YIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLSLDDVLLVNYGQVSYKLQVLE 243

Query: 240 LKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDD 299
           L+P++S+SVLETDIEVDIVSPD +S   +Q+ LKPL +GKSESG VEEG+Y +YKF ID+
Sbjct: 244 LRPATSISVLETDIEVDIVSPDIVSDQPNQHVLKPLQYGKSESGTVEEGRYDYYKFVIDE 303

Query: 300 DTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSK 359
            T +K+++G  +  V+VD E  G DT +YVS+HP+LFP+ + HEWSSHD GSK +IL SK
Sbjct: 304 ATVEKVMAGSVKVIVKVDVEKVGADTDLYVSKHPVLFPSLNQHEWSSHDVGSKTLILVSK 363

Query: 360 DKSVDVGTYSIGVYGFKDMTKFQVLVTLEDD-SGRKVGQEATSSSSSIEMDTVQCKNCKR 418
           ++++  GTYSIGVYGFK   K+QV V +++   G KVG+ A SSSS +  DTV+C+NCK 
Sbjct: 364 ERALSSGTYSIGVYGFKGTVKYQVSVLVQESIDGAKVGERAVSSSSDV--DTVECRNCKH 421

Query: 419 FIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVF 478
            IPSRSI LHE YCSRH+V C H GCG+VLR EEA++H+HC+KCG+ LQ  EMEKH+KVF
Sbjct: 422 SIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGKALQPTEMEKHLKVF 481

Query: 479 HEQCSCPCGVVLENAAMVSY----CPL 501
           HE  +C CG+VLE   MV +    CPL
Sbjct: 482 HEPLTCGCGIVLEKEQMVQHQGKDCPL 508

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414447|ref|NP_567465.1| ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] gi|17933289|gb|AAL48228.1|AF446353_1 AT4g15420/dl3755w [Arabidopsis thaliana] gi|21554166|gb|AAM63245.1| UFD1 like protein [Arabidopsis thaliana] gi|23506013|gb|AAN28866.1| At4g15420/dl3755w [Arabidopsis thaliana] gi|111609946|gb|ABH11523.1| UFD1d [Arabidopsis thaliana] gi|332658201|gb|AEE83601.1| ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/507 (63%), Positives = 405/507 (79%), Gaps = 18/507 (3%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELR A+EKLE+EQ+ERK+RA+LKLEREKK+KE A KQREAIEAAQR+RRLDAI+AQ+
Sbjct: 1   MDFELRSAKEKLEREQRERKQRAKLKLEREKKSKEAAIKQREAIEAAQRARRLDAIEAQI 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS 120
           KADQ MQESL++G GIVF    +A+ FQG+GDKIKLPPSCFTELS QGAFDKGPL+F+LS
Sbjct: 61  KADQHMQESLVSGDGIVFERVFQAVSFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFELS 120

Query: 121 VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNN-SFVEVR 179
           V+             ++ ++THSGVLEFTA++G +GLPPHVW NLF +  P +   VE+R
Sbjct: 121 VVDH----------ADNKKTTHSGVLEFTAEDGTIGLPPHVWSNLFSTHDPMDVPLVEIR 170

Query: 180 YVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLE 239
           Y+RLPKG+YAKLQP+ +GF++LPN KA+LET LRQHATLS DDVL VNYG+++YKL+VLE
Sbjct: 171 YIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLSLDDVLLVNYGQVSYKLQVLE 230

Query: 240 LKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDD 299
           L+P++S+SVLETDIEVDIVSPD +S   +Q+ LKPL +GKSESG VEEG+Y +YKF ID+
Sbjct: 231 LRPATSISVLETDIEVDIVSPDIVSDQPNQHVLKPLQYGKSESGTVEEGRYDYYKFVIDE 290

Query: 300 DTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSK 359
            T +K+++G  +  V+VD E  G DT +YVS+HP+LFP+ + HEWSSHD GSK +IL SK
Sbjct: 291 ATVEKVMAGSVKVIVKVDVEKVGADTDLYVSKHPVLFPSLNQHEWSSHDVGSKTLILVSK 350

Query: 360 DKSVDVGTYSIGVYGFKDMTKFQVLVTLEDD-SGRKVGQEATSSSSSIEMDTVQCKNCKR 418
           ++++  GTYSIGVYGFK   K+QV V +++   G KVG+ A SSSS +  DTV+C+NCK 
Sbjct: 351 ERALSSGTYSIGVYGFKGTVKYQVSVLVQESIDGAKVGERAVSSSSDV--DTVECRNCKH 408

Query: 419 FIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVF 478
            IPSRSI LHE YCSRH+V C H GCG+VLR EEA++H+HC+KCG+ LQ  EMEKH+KVF
Sbjct: 409 SIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGKALQPTEMEKHLKVF 468

Query: 479 HEQCSCPCGVVLENAAMVSY----CPL 501
           HE  +C CG+VLE   MV +    CPL
Sbjct: 469 HEPLTCGCGIVLEKEQMVQHQGKDCPL 495

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
TAIR|locus:2130120	561	AT4G15420 [Arabidopsis thalian	0.878	0.786	0.614	2.1e-156
DICTYBASE|DDB_G0271122	330	ufd1 "ubiquitin fusion degrada	0.386	0.587	0.359	2.3e-26
TAIR|locus:2066122	312	AT2G29070 [Arabidopsis thalian	0.306	0.493	0.394	4.7e-24
TAIR|locus:2050054	340	UFD1 "AT2G21270" [Arabidopsis	0.348	0.514	0.366	6.2e-24
ZFIN|ZDB-GENE-040718-150	308	ufd1l "ubiquitin fusion degrad	0.278	0.454	0.426	1e-23
UNIPROTKB|F1NVD8	307	UFD1L "Uncharacterized protein	0.278	0.456	0.419	3.8e-23
UNIPROTKB|J9NYF2	307	UFD1L "Uncharacterized protein	0.278	0.456	0.419	3.8e-23
UNIPROTKB|Q92890	307	UFD1L "Ubiquitin fusion degrad	0.278	0.456	0.419	3.8e-23
UNIPROTKB|F1RK61	307	UFD1L "Uncharacterized protein	0.278	0.456	0.419	3.8e-23
MGI|MGI:109353	307	Ufd1l "ubiquitin fusion degrad	0.278	0.456	0.419	3.8e-23

TAIR|locus:2130120 AT4G15420 [Arabidopsis thaliana (taxid:3702)]

 Score = 1494 (531.0 bits), Expect = 2.1e-156, Sum P(2) = 2.1e-156
 Identities = 282/459 (61%), Positives = 360/459 (78%)

Query:    49 RSRRLDAIDAQLKADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQG 108
             R+RRLDAI+AQ+KADQ MQESL++G GIVF    +A+ FQG+GDKIKLPPSCFTELS QG
Sbjct:    49 RARRLDAIEAQIKADQHMQESLVSGDGIVFERVFQAVSFQGNGDKIKLPPSCFTELSDQG 108

Query:   109 AFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPS 168
             AFDKGPL+F+LSV+             ++ ++THSGVLEFTA++G +GLPPHVW NLF +
Sbjct:   109 AFDKGPLYFELSVVDHA----------DNKKTTHSGVLEFTAEDGTIGLPPHVWSNLFST 158

Query:   169 DTPNN-SFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVN 227
               P +   VE+RY+RLPKG+YAKLQP+ +GF++LPN KA+LET LRQHATLS DDVL VN
Sbjct:   159 HDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLSLDDVLLVN 218

Query:   228 YGELAYKLKVLELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEE 287
             YG+++YKL+VLEL+P++S+SVLETDIEVDIVSPD +S   +Q+ LKPL +GKSESG VEE
Sbjct:   219 YGQVSYKLQVLELRPATSISVLETDIEVDIVSPDIVSDQPNQHVLKPLQYGKSESGTVEE 278

Query:   288 GKYVFYKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSH 347
             G+Y +YKF ID+ T +K+++G  +  V+VD E  G DT +YVS+HP+LFP+ + HEWSSH
Sbjct:   279 GRYDYYKFVIDEATVEKVMAGSVKVIVKVDVEKVGADTDLYVSKHPVLFPSLNQHEWSSH 338

Query:   348 DAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDD-SGRKVGQEATSSSSSI 406
             D GSK +IL SK++++  GTYSIGVYGFK   K+QV V +++   G KVG+ A SSSS +
Sbjct:   339 DVGSKTLILVSKERALSSGTYSIGVYGFKGTVKYQVSVLVQESIDGAKVGERAVSSSSDV 398

Query:   407 EMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGL 466
               DTV+C+NCK  IPSRSI LHE YCSRH+V C H GCG+VLR EEA++H+HC+KCG+ L
Sbjct:   399 --DTVECRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGKAL 456

Query:   467 QRREMEKHMKVFHEQCSCPCGVVLENAAMVSY----CPL 501
             Q  EMEKH+KVFHE  +C CG+VLE   MV +    CPL
Sbjct:   457 QPTEMEKHLKVFHEPLTCGCGIVLEKEQMVQHQGKDCPL 495

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

DICTYBASE|DDB_G0271122 ufd1 "ubiquitin fusion degradation protein UFD1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 299 (110.3 bits), Expect = 2.3e-26, P = 2.3e-26
 Identities = 74/206 (35%), Positives = 109/206 (52%)

Query:   119 LSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEV 178
             LS L+ + P   E     S + +H GVLEF A+EG   LP  + +NL         F+++
Sbjct:    60 LSRLNIQYPMLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNL---QLKEGEFIDI 116

Query:   179 RYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVL 238
             +   L KGT+ K+QP    F ++ N KAVLE SLR+ ATL++DD + ++Y    Y LKV+
Sbjct:   117 KNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVV 176

Query:   239 ELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTID 298
             ELKP++++S++E D+ VD   P D    T   T  P   G   SG   +G      F   
Sbjct:   177 ELKPANAISIIEADVSVDFAPPMDSKEATSPSTSSP---GSHVSGP-SKG----LTFGPA 228

Query:   299 DDTRKKIVSGEKRAEVRVDSEIDGGD 324
               + K I  G+K+ +   DS+ D  D
Sbjct:   229 STSAKPIPGGKKKKD-ESDSDSDSDD 253

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2066122 AT2G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 62/157 (39%), Positives = 88/157 (56%)

Query:   118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
             +L+ LH E P   +       +++H GVLEFTADEG V LP  + +N+          ++
Sbjct:    40 RLASLHIEYPMLFQLSNVSVEKTSHCGVLEFTADEGLVYLPYWMMQNM---SLEEGDVMQ 96

Query:   178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
             V+ + L KGTY KLQP    F ++ N KA+LET+LR ++ L+  D + V Y    Y + V
Sbjct:    97 VKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKQYYINV 156

Query:   238 LELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKP 274
             +E KPSS+VS++ETD EVD   P D         L P
Sbjct:   157 VEAKPSSAVSIIETDCEVDFAPPLDYKEPEKPQKLTP 193

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2050054 UFD1 "AT2G21270" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 6.2e-24, P = 6.2e-24
 Identities = 66/180 (36%), Positives = 100/180 (55%)

Query:   118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
             +L+ LH + P   E       R TH GVLEF A+EG + +P  + +NL   +      V 
Sbjct:    66 RLASLHIDYPMLFELRNAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQE---GDIVR 122

Query:   178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
             VR V LPKGTY KLQP    F ++ N KA+LET+LR ++ L+  D + V Y    Y + +
Sbjct:   123 VRNVTLPKGTYVKLQPHTTDFLDISNPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDI 182

Query:   238 LELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESG-MVEEGKYVFYKFT 296
             +E KP++++S++ETD EVD   P D     ++ T      G +++  +V+E +  F  FT
Sbjct:   183 VETKPANAISIIETDCEVDFAPPLDYKE-PERPTAPSAAKGPAKAEEVVDEPEPKFNPFT 241

GO:0003674 "molecular_function" evidence=ND

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-040718-150 ufd1l "ubiquitin fusion degradation 1-like" [Danio rerio (taxid:7955)]

 Score = 276 (102.2 bits), Expect = 1.0e-23, P = 1.0e-23
 Identities = 61/143 (42%), Positives = 85/143 (59%)

Query:   118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
             +LS L+   P   +   K S+R TH GVLEF ADEGF  LP  + +NL   +      V+
Sbjct:    55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGFCYLPHWMMQNLLLEE---GGLVQ 111

Query:   178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
             V  V L   TY+K QP+   F ++ N KAVLE +LR  A L+  DV+ +NY E  Y+L+V
Sbjct:   112 VESVNLMVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171

Query:   238 LELKPSSSVSVLETDIEVDIVSP 260
             +E KP  +VS++E D+ VD  +P
Sbjct:   172 METKPDKAVSIIECDMNVDFDAP 194

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IDA

UNIPROTKB|F1NVD8 UFD1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 60/143 (41%), Positives = 84/143 (58%)

Query:   118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
             +LS L+   P   +   K S+R TH GVLEF ADEG   LP  + +NL   +      V+
Sbjct:    55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111

Query:   178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
             V  V L   TY+K QP+   F ++ N KAVLE +LR  A L+  DV+ +NY E  Y+L+V
Sbjct:   112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRSFACLTTGDVIAINYNEKIYELRV 171

Query:   238 LELKPSSSVSVLETDIEVDIVSP 260
             +E KP  +VS++E D+ VD  +P
Sbjct:   172 METKPDKAVSIIECDMNVDFDAP 194

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|J9NYF2 UFD1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 60/143 (41%), Positives = 84/143 (58%)

Query:   118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
             +LS L+   P   +   K S+R TH GVLEF ADEG   LP  + +NL   +      V+
Sbjct:    55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111

Query:   178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
             V  V L   TY+K QP+   F ++ N KAVLE +LR  A L+  DV+ +NY E  Y+L+V
Sbjct:   112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171

Query:   238 LELKPSSSVSVLETDIEVDIVSP 260
             +E KP  +VS++E D+ VD  +P
Sbjct:   172 METKPDKAVSIIECDMNVDFDAP 194

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q92890 UFD1L "Ubiquitin fusion degradation protein 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 60/143 (41%), Positives = 84/143 (58%)

Query:   118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
             +LS L+   P   +   K S+R TH GVLEF ADEG   LP  + +NL   +      V+
Sbjct:    55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111

Query:   178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
             V  V L   TY+K QP+   F ++ N KAVLE +LR  A L+  DV+ +NY E  Y+L+V
Sbjct:   112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171

Query:   238 LELKPSSSVSVLETDIEVDIVSP 260
             +E KP  +VS++E D+ VD  +P
Sbjct:   172 METKPDKAVSIIECDMNVDFDAP 194

GO:0005102 "receptor binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0001501 "skeletal system development" evidence=TAS

GO:0004843 "ubiquitin-specific protease activity" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

UNIPROTKB|F1RK61 UFD1L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 60/143 (41%), Positives = 84/143 (58%)

Query:   118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
             +LS L+   P   +   K S+R TH GVLEF ADEG   LP  + +NL   +      V+
Sbjct:    55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111

Query:   178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
             V  V L   TY+K QP+   F ++ N KAVLE +LR  A L+  DV+ +NY E  Y+L+V
Sbjct:   112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171

Query:   238 LELKPSSSVSVLETDIEVDIVSP 260
             +E KP  +VS++E D+ VD  +P
Sbjct:   172 METKPDKAVSIIECDMNVDFDAP 194

GO:0005737 "cytoplasm" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:109353 Ufd1l "ubiquitin fusion degradation 1 like" [Mus musculus (taxid:10090)]

 Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 60/143 (41%), Positives = 84/143 (58%)

Query:   118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
             +LS L+   P   +   K S+R TH GVLEF ADEG   LP  + +NL   +      V+
Sbjct:    55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111

Query:   178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
             V  V L   TY+K QP+   F ++ N KAVLE +LR  A L+  DV+ +NY E  Y+L+V
Sbjct:   112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171

Query:   238 LELKPSSSVSVLETDIEVDIVSP 260
             +E KP  +VS++E D+ VD  +P
Sbjct:   172 METKPDKAVSIIECDMNVDFDAP 194

GO:0005102 "receptor binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025922001 SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (579 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	502
PLN03086	567	PLN03086, PLN03086, PRLI-interacting factor K; Pro	0.0
pfam03152	176	pfam03152, UFD1, Ubiquitin fusion degradation prot	1e-64
COG5140	331	COG5140, UFD1, Ubiquitin fusion-degradation protei	7e-26
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-04
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	3e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	7e-04
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	8e-04
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
smart00935	140	smart00935, OmpH, Outer membrane protein (OmpH-lik	0.002
pfam04518	380	pfam04518, Effector_1, Effector from type III secr	0.002
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.003
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.003
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.004

>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional

 Score =  835 bits (2159), Expect = 0.0
 Identities = 366/505 (72%), Positives = 432/505 (85%), Gaps = 7/505 (1%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
           MDFELRRAREKLE+EQ+ERK+RA+LKLERE+KAKEEA KQREAIEAAQRSRRLDAI+AQ+
Sbjct: 1   MDFELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQI 60

Query: 61  KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS 120
           KADQ+MQESL AG GIVF    EA+ FQG+GDKIKLPPSCFTELS QGAFDKGPL+F+LS
Sbjct: 61  KADQQMQESLQAGRGIVFSRIFEAVSFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFRLS 120

Query: 121 VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRY 180
           V+HQEG   M+D   +S ++THSGVLEFTA+EG VGLPPHVW NLFPSD P+   VEVRY
Sbjct: 121 VVHQEGSGEMKD--TDSQKTTHSGVLEFTAEEGSVGLPPHVWSNLFPSDPPDVPLVEVRY 178

Query: 181 VRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLEL 240
           + LPKGTYAKLQP+G+GF++LPN KAVLET+LRQHATLS+DDVL VNYG+L YKLKVLEL
Sbjct: 179 IWLPKGTYAKLQPDGVGFSDLPNHKAVLETALRQHATLSEDDVLVVNYGQLTYKLKVLEL 238

Query: 241 KPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDD 300
           KP+SSVSVLETDIEVDIV PD +S   +Q+ LKPL FGKSESGMVEEG Y +YKF+ID+D
Sbjct: 239 KPASSVSVLETDIEVDIVGPDSVSNEENQHVLKPLEFGKSESGMVEEGNYRYYKFSIDED 298

Query: 301 TRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKD 360
           T +K+ SG+ R EV++D+E  GGDT +YVS+HPL+FPTRH HEWSSHD GSKV+IL SKD
Sbjct: 299 TWEKVASGDARVEVKIDAETSGGDTDLYVSKHPLVFPTRHQHEWSSHDMGSKVLILKSKD 358

Query: 361 KSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKRFI 420
            S+  GTYSIGVYGFK  TK+QV V+++D++ +KVG++A SSSSS+++DTV+C+NCK +I
Sbjct: 359 ASLSSGTYSIGVYGFKGTTKYQVSVSVQDNNNQKVGEQA-SSSSSMDVDTVECRNCKHYI 417

Query: 421 PSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHE 480
           PSRSI LHEAYCSRH+V C H GCG+VLR EEA++HVHC+KCGQ  Q+ EMEKHMKVFHE
Sbjct: 418 PSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQGEMEKHMKVFHE 477

Query: 481 QCSCPCGVVLENAAMV----SYCPL 501
              CPCGVVLE   MV    S CPL
Sbjct: 478 PLQCPCGVVLEKEQMVQHQASTCPL 502

Length = 567

>gnl|CDD|217391 pfam03152, UFD1, Ubiquitin fusion degradation protein UFD1

 Score =  207 bits (528), Expect = 1e-64
 Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 19/195 (9%)

Query: 66  MQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQE 125
             E       + F    E       G KI LPPS    LS      + P+ F+L      
Sbjct: 1   RFEQTYRCYPVSFLPGNE-REDIEYGGKIILPPSALDRLSRLNI--EYPMLFELQ----- 52

Query: 126 GPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPK 185
              N       + + TH GVLEF A+EG + LP  + +NL   +      V++    LPK
Sbjct: 53  ---NPA-----NKKVTHCGVLEFIAEEGTIYLPYWMMQNLGLEEGDL---VQITSASLPK 101

Query: 186 GTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSS 245
           GT+ KLQP+   F ++ N KAVLE +LR  +TL++ D + +NY +  Y++ +LE+KP+++
Sbjct: 102 GTFVKLQPQSTDFLDISNPKAVLENALRNFSTLTKGDTIVINYNDKIYEIDILEVKPANA 161

Query: 246 VSVLETDIEVDIVSP 260
           +S++ETD+EVD   P
Sbjct: 162 ISIIETDLEVDFAPP 176

Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified. This family includes UFD1, a 40kD protein that is essential for vegetative cell viability. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterized by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation. Length = 176

>gnl|CDD|227469 COG5140, UFD1, Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]

 Score =  107 bits (269), Expect = 7e-26
 Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 21/173 (12%)

Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G K+ LPPS                  KLS L+ + P   E    +    TH GVLEF A
Sbjct: 45  GGKVILPPSALV---------------KLSSLNIQYPMLFEISHSDGIYRTHGGVLEFIA 89

Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
           +EG V LP  + + L          V +RY   P G + KL P+ + F ++ + KAVLE 
Sbjct: 90  EEGRVYLPSWMMQTLSMEP---GDLVVLRYTDFPLGKFVKLIPQSVDFLDIEDPKAVLEN 146

Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSS---VSVLETDIEVDIVSP 260
            LR  +TL++ D + + Y +    +K   + P  S   + V+ETD+ VD + P
Sbjct: 147 CLRNFSTLTEGDEIEIQYNDEVGSIKFTVVHPEPSANAIYVVETDLVVDFLPP 199

Length = 331

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 4   ELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREA--IEAAQRSRRLDAIDAQLK 61
           +L + R   ++++K+ +E A+    ++K+A+E A K   A   +A   ++R  A   +  
Sbjct: 105 QLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAA 164

Query: 62  ADQEMQE 68
           A+ + + 
Sbjct: 165 AEAKKKA 171

Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 10  EKLEKEQKERK---ERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQLKADQEM 66
           E   K   E K     A+ K E E KAK EAK + +A EA  +     A  A+ KA  E 
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAK-----AEAAKAKAAAEA 209

Query: 67  QE 68
             
Sbjct: 210 AA 211

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 35/69 (50%)

Query: 4   ELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQLKAD 63
           E+ R R + E+ + ER+E   L+ +  ++  E  ++Q+E  EA +R R+   +    +  
Sbjct: 183 EVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQ 242

Query: 64  QEMQESLLA 72
            E +E  L 
Sbjct: 243 IEEKEERLQ 251

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 8   AREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAI-----DAQLKA 62
           A++  EK+++   E A+ K   E KAK EA+ +++A E A++    +A      +A+ KA
Sbjct: 111 AKQAEEKQKQA--EEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168

Query: 63  DQ 64
            +
Sbjct: 169 AE 170

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 6   RRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQ-RSRRLDAIDAQLKADQ 64
           R+ R+K EKE+ E++ R + +L+R ++ + E K++R   E A+  + R   ++ Q + ++
Sbjct: 215 RKERQK-EKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEE 273

Query: 65  EMQE 68
             QE
Sbjct: 274 LEQE 277

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 9/65 (13%)

Query: 4   ELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQ-REAIEAAQRSRRLDAIDAQLKA 62
            L +  EKL++E +E+KE+ +   E E K  EEA+K+ ++AI+ A++       D  +K 
Sbjct: 541 ALLKEAEKLKEELEEKKEKLQ---EEEDKLLEEAEKEAQQAIKEAKK-----EADEIIKE 592

Query: 63  DQEMQ 67
            +++Q
Sbjct: 593 LRQLQ 597

Length = 782

>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like)

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 16/67 (23%), Positives = 34/67 (50%)

Query: 4  ELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQLKAD 63
            + A+++LEKE K+R+       +  +K KE+ +K    +  A R ++   +  +++  
Sbjct: 15 AGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEF 74

Query: 64 QEMQESL 70
          Q  Q+ L
Sbjct: 75 QRKQQKL 81

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140

>gnl|CDD|218124 pfam04518, Effector_1, Effector from type III secretion system

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 7   RAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEA------AQRSRRLDAI 56
            A  KLEKE    KE+ R  ++R ++AK    K    I+A       Q+S  LD +
Sbjct: 201 EALAKLEKE----KEQIRRDIKRCERAKAVLNKLLARIKADAKLTSEQKSELLDTL 252

This is a family of effector proteins which are secreted by the type III secretion system. The precise function of this family is unknown. Length = 380

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 9   REKLEKEQKERKERARLKL---EREKKAKEEAKKQREAIEAAQRSRRLDAIDAQLKADQE 65
           ++K   EQ+  K+  + +L   E++K+A+E AK+     + A+ +    A  A+ KA+ E
Sbjct: 93  QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAE 152

Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 6   RRAREKLEKEQKERKERARLKLEREKKAKEEAKKQRE----AIEAAQRSRRLDAIDAQLK 61
           ++A E   K+  E K  A+ + E EKKAKEEAKKQ E    A  AA+  ++      + +
Sbjct: 119 KQAEEAKAKQAAEAK--AKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAE 176

Query: 62  AD 63
           A+
Sbjct: 177 AE 178

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 8   AREKLEKEQK-------ERKERARLK----LEREKKAKEEAKKQREAIEAAQRSRRLDAI 56
           A+ K   E K       E+K +   K     E + KA  EAKK+    +    +      
Sbjct: 124 AKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183

Query: 57  DAQLKADQE 65
           +A+ KA  E
Sbjct: 184 EAKAKAKAE 192

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	502
PLN03086	567	PRLI-interacting factor K; Provisional	100.0
KOG1816	308	consensus Ubiquitin fusion-degradation protein [Po	100.0
PF03152	176	UFD1: Ubiquitin fusion degradation protein UFD1; I	100.0
COG5140	331	UFD1 Ubiquitin fusion-degradation protein [Posttra	100.0
PLN03086	567	PRLI-interacting factor K; Provisional	99.33
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.27
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.0
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	98.59
KOG3576	267	consensus Ovo and related transcription factors [T	98.48
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	98.41
PHA02768	55	hypothetical protein; Provisional	98.38
KOG3576	267	consensus Ovo and related transcription factors [T	98.14
PHA00733	128	hypothetical protein	98.0
KOG3608	467	consensus Zn finger proteins [General function pre	97.92
KOG3608	467	consensus Zn finger proteins [General function pre	97.81
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	97.77
PHA00732	79	hypothetical protein	97.62
PHA02768	55	hypothetical protein; Provisional	97.57
PHA00733	128	hypothetical protein	97.42
KOG3993	500	consensus Transcription factor (contains Zn finger	97.1
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	96.92
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	96.91
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	96.65
PHA00616	44	hypothetical protein	95.99
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	95.98
KOG3993	500	consensus Transcription factor (contains Zn finger	95.93
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	95.86
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	95.74
PTZ00266	1021	NIMA-related protein kinase; Provisional	95.72
KOG2186	276	consensus Cell growth-regulating nucleolar protein	95.36
PHA00732	79	hypothetical protein	94.94
PHA00616	44	hypothetical protein	94.86
PF02933	64	CDC48_2: Cell division protein 48 (CDC48), domain	94.65
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.54
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	94.38
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.34
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	94.24
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.29
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.11
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	92.8
smart00355	26	ZnF_C2H2 zinc finger.	92.54
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	92.32
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	91.35
KOG3654	708	consensus Uncharacterized CH domain protein [Cytos	91.32
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	91.13
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	91.13
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	91.11
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	90.87
PTZ00121	2084	MAEBL; Provisional	90.84
COG5189	423	SFP1 Putative transcriptional repressor regulating	90.29
PRK11029	334	FtsH protease regulator HflC; Provisional	89.62
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	88.44
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	88.11
PRK00247	429	putative inner membrane protein translocase compon	87.37
PRK04860	160	hypothetical protein; Provisional	87.23
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	86.99
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	86.73
PRK04860	160	hypothetical protein; Provisional	86.21
PF05502	483	Dynactin_p62: Dynactin p62 family; InterPro: IPR00	86.08
PF09262	80	PEX-1N: Peroxisome biogenesis factor 1, N-terminal	85.93
PF06936	190	Selenoprotein_S: Selenoprotein S (SelS); InterPro:	85.51
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	85.5
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	85.35
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	84.71
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	83.72
KOG3054	299	consensus Uncharacterized conserved protein [Funct	83.5
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	83.23
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	83.05
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	82.98
PRK04023	1121	DNA polymerase II large subunit; Validated	82.92
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	82.1
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	81.95
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.22
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	81.1
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	80.8
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	80.65
PF14353	128	CpXC: CpXC protein	80.35
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	80.03

>PLN03086 PRLI-interacting factor K; Provisional

Probab=100.00  E-value=2e-140  Score=1131.40  Aligned_cols=498  Identities=73%  Similarity=1.191  Sum_probs=472.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q 010753            1 MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQLKADQEMQESLLAGGGIVFYH   80 (502)
Q Consensus         1 m~~~l~~~~~k~~~e~~~r~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (502)
                      ||||||+|++||+|||++|+++||+|+++||++|+||+|||||||++||||||||++||++|+|+|+|++++|+||.|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (567)
T PLN03086          1 MDFELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQESLQAGRGIVFSR   80 (567)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeccCCCCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEeeeeeCCCceeccHH
Q 010753           81 TLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPH  160 (502)
Q Consensus        81 ~~~~~~~~~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVlEFsA~EG~v~LP~w  160 (502)
                      .|.++|+.+.||||+||||||++|+++++.++|||+|+|+|.++.+++.+++++  .+++||||||||+|+||+|+||+|
T Consensus        81 ~~~~~~~~~~GdKI~LPpSaL~~L~~~~~~~~~Pm~F~l~~~~~~~~~~~~~~~--~~~~th~GVlEF~A~EG~v~lP~w  158 (567)
T PLN03086         81 IFEAVSFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFRLSVVHQEGSGEMKDTD--SQKTTHSGVLEFTAEEGSVGLPPH  158 (567)
T ss_pred             EeeccccCCCCCeEEcCHHHHHHHHhcCCCCCCCeEEEEecccccccccccccc--CCcEEEEEEEEEEcCCCeEEcCHH
Confidence            999999999999999999999999999987899999999998776666665555  478999999999999999999999


Q ss_pred             HHHhcCCCCCCCCceEEEEEEecCCcceEEEeeccCCCCCCCChHHHHHHHhccCcccccCCEEEEEECCEEEEEEEEEE
Q 010753          161 VWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLEL  240 (502)
Q Consensus       161 m~~~L~~~~~~~~~~V~v~~~~LPkGt~vkLqP~~~~f~di~n~KavLE~~LR~~stLT~Gd~I~I~~~~~~y~l~V~e~  240 (502)
                      ||++|++.+..++++|+|++++|||||||||||++.+|+||+|||||||++||||+|||+||+|.|+|+++.|+|+|+++
T Consensus       159 m~~~L~~~~~~~~~~v~v~~~~Lpkgt~vklqP~~~~f~di~npKavLE~~Lr~~stLT~Gd~i~i~~~~~~y~~~V~ev  238 (567)
T PLN03086        159 VWSNLFPSDPPDVPLVEVRYIWLPKGTYAKLQPDGVGFSDLPNHKAVLETALRQHATLSEDDVLVVNYGQLTYKLKVLEL  238 (567)
T ss_pred             HHhhcCCCCCCCCCeEEEEEeecCCCCEEEEeeccCCcCCcccHHHHHHHHhhcCccccCCCEEEEecCCEEEEEEEEEE
Confidence            99999987655688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEcCceEEeccCCCCCCCccCccccceeecCCccceeeccCceeEEEEEecccccccccCCceeEEEEEeecC
Q 010753          241 KPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDDTRKKIVSGEKRAEVRVDSEI  320 (502)
Q Consensus       241 ~P~~aVsIidTDleVD~~~~~~~~~~~~~~~~~~l~i~~~~sg~v~~g~y~~y~l~l~~~~~~~l~~~~~~i~i~l~~~~  320 (502)
                      +|++|||||||||+|||+||+++.+++++.+.++|++|+.++|+|.+|.|+||+|++++.+||+++++++.|+++++...
T Consensus       239 ~P~~aVsiieTDi~VDf~~p~~~~~~~~q~~~~~l~~~~~~~g~v~~g~y~~y~~~~~~~~~~~~~~~~~~~~~~i~~~~  318 (567)
T PLN03086        239 KPASSVSVLETDIEVDIVGPDSVSNEENQHVLKPLEFGKSESGMVEEGNYRYYKFSIDEDTWEKVASGDARVEVKIDAET  318 (567)
T ss_pred             cCCCeeEEEeCceEEEeccCCcchhcchhhhcceeecccccccceecccccceeeecccchhhhhccCCceEEEEEeecc
Confidence            99999999999999999999998877888999999999999999999999999999999999999999999999987777


Q ss_pred             CCCceeEEEcCCCCCCCcccceeeccCCCCCceEEecCCCCccccceEEEEEeccCCCeeEEEEEEEecCCCCcCccccC
Q 010753          321 DGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEAT  400 (502)
Q Consensus       321 ~~~d~DlfvS~~~~~~p~~~~h~~ss~d~~sk~i~i~~~~~~l~a~~~~i~v~~~~~~~~~~l~v~~~~~~~~~~g~~~~  400 (502)
                      +++|+|||||++|+++|+.++|+|||+++++|+|+|+|+|++|+++.|||+||||+++++|+|+|++++..++..|+++.
T Consensus       319 ~~~~~dlfvS~~~~~~p~~~~h~~ss~~~~~k~l~~~~~~~~l~~~~~~i~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (567)
T PLN03086        319 SGGDTDLYVSKHPLVFPTRHQHEWSSHDMGSKVLILKSKDASLSSGTYSIGVYGFKGTTKYQVSVSVQDNNNQKVGEQAS  398 (567)
T ss_pred             CCCceEEEEcccccccccccccccccCccccceeEecCCCcccccceEEEEEeccCCceeEEEEEEeecccccccccccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988876665454


Q ss_pred             CCCcccccCcccccccCcccccchHHhHhhhccCceeeccccccCcccccccccCcccCccCCCccChhhHHHhhhcccc
Q 010753          401 SSSSSIEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHE  480 (502)
Q Consensus       401 ~~~~~~~~~~~~C~nC~k~~~~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~~s~l~kH~~i~Ht  480 (502)
                       ++++++.+...|+||+++++.++|.+|++||.||++.||+++||.+|.+.+|++||||++||++|+.+.|++|+++||.
T Consensus       399 -~~~s~~~~~V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~Hk  477 (567)
T PLN03086        399 -SSSSMDVDTVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQGEMEKHMKVFHE  477 (567)
T ss_pred             -ccccCCCCeEECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccchHHHHHHHHhcCC
Confidence             3367899999999999999999999999999999999997679999999999999999999999998899999999999


Q ss_pred             eeeecCCccccccccc----ccCCC
Q 010753          481 QCSCPCGVVLENAAMV----SYCPL  501 (502)
Q Consensus       481 p~~C~Cg~~f~~~~~~----~~Cp~  501 (502)
                      |+.|+||+.|.+..+.    .+||.
T Consensus       478 pv~CpCg~~~~R~~L~~H~~thCp~  502 (567)
T PLN03086        478 PLQCPCGVVLEKEQMVQHQASTCPL  502 (567)
T ss_pred             CccCCCCCCcchhHHHhhhhccCCC
Confidence            9999999988776665    56764

>KOG1816 consensus Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-63  Score=492.60  Aligned_cols=256  Identities=36%  Similarity=0.544  Sum_probs=211.1

Q ss_pred             CCcEEEEEEeeecc----------CCCCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEE
Q 010753           73 GGGIVFYHTLEALP----------FQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTH  142 (502)
Q Consensus        73 ~~g~~~~~~~~~~~----------~~~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th  142 (502)
                      ..|..|.+.|+++|          ..+.|||||||||||++|++.++  +|||+|+|+|.+             ..++||
T Consensus         9 ~~g~~f~~~yrcy~~~~l~~~~~s~~~~GgKIilPPSaL~~Ls~lnI--~yPMlFkLtn~~-------------~~r~TH   73 (308)
T KOG1816|consen    9 PRGFQFETSYRCYPVSFLPGPDRSDVNKGGKIILPPSALDRLSSLNI--TYPMLFKLTNVD-------------VDRVTH   73 (308)
T ss_pred             cCCcceeeeeEecccccccCccccccccCCeEEeCHHHHHHHHHhcC--CCceEEEEeccc-------------cceeee
Confidence            36888999999987          25799999999999999999888  899999999974             468999


Q ss_pred             EEEeeeeeCCCceeccHHHHHhcCCCCCCCCceEEEEEEecCCcceEEEeeccCCCCCCCChHHHHHHHhccCcccccCC
Q 010753          143 SGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDD  222 (502)
Q Consensus       143 ~GVlEFsA~EG~v~LP~wm~~~L~~~~~~~~~~V~v~~~~LPkGt~vkLqP~~~~f~di~n~KavLE~~LR~~stLT~Gd  222 (502)
                      ||||||+|+||.||||.|||++|+++   ++++|+|++++|||||||||||++.+|+||+|||||||+.||||+|||+||
T Consensus        74 cGVLEF~AeEG~vyLP~WMmq~L~le---~gdlv~i~~v~lpkgtyvKLqP~s~dFLDItNpKAvLE~~LRn~acLT~gD  150 (308)
T KOG1816|consen   74 CGVLEFTAEEGRVYLPYWMMQNLLLE---EGDLVRIRSVTLPKGTYVKLQPHSVDFLDITNPKAVLENALRNYACLTTGD  150 (308)
T ss_pred             eeEEEEEecCceEEeehHhhhhccCC---CCCeEEEEEeeccccceeeeccCCCCccccCChHHHHHHHHhhccccccCC
Confidence            99999999999999999999999998   689999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCEEEEEEEEEEcCCCceEEEcCceEEeccCCCCCCCccCccccceeecCCccceeeccCceeEEEEEeccccc
Q 010753          223 VLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDDTR  302 (502)
Q Consensus       223 ~I~I~~~~~~y~l~V~e~~P~~aVsIidTDleVD~~~~~~~~~~~~~~~~~~l~i~~~~sg~v~~g~y~~y~l~l~~~~~  302 (502)
                      +|.|+||++.|+|+|+|++|++||||||||++|||+||++|.++..+  ..+.+..+..++.|.+  |-.|+..+.+ ..
T Consensus       151 vi~i~Yn~k~y~i~V~e~kPa~aVsIiEtD~~VDF~pP~gyke~~~~--~~~~~~~k~~~~~v~~--~ag~~~~~e~-~~  225 (308)
T KOG1816|consen  151 VILINYNEKTYELKVVETKPANAVSIIETDLNVDFDPPLGYKEPERQ--VAPAEKAKGEAEVVGS--YAGYKNVIEN-KV  225 (308)
T ss_pred             EEEEecCCeEEEEEEEEecCCceeEEEEcceeecccCCcCccCcccc--cChhhcccccceeecc--cccccccccc-ce
Confidence            99999999999999999999999999999999999999999865543  4445555555555644  5666555422 23


Q ss_pred             ccccCCceeEEEEEeecCCCCceeEEEcCCCCCCCcccceeeccCCCCCceEEecCC
Q 010753          303 KKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSK  359 (502)
Q Consensus       303 ~~l~~~~~~i~i~l~~~~~~~d~DlfvS~~~~~~p~~~~h~~ss~d~~sk~i~i~~~  359 (502)
                      .....+..++-.+-    ....+    +.+|...+....+.|.++|+...++.....
T Consensus       226 ~~f~gsg~rLdgK~----~~~e~----~~~pv~~~~~~~~~~~~~d~~~G~l~F~~~  274 (308)
T KOG1816|consen  226 EPFTGSGRRLDGKK----KVEEV----SKHPVKNGDLIQRGVPNHDFKLGKLVFGRN  274 (308)
T ss_pred             eeeccccceecccc----ccccc----CCCcccCcccccCCCCccccCCceEEEecC
Confidence            33333334443331    11111    566666555567899999998887777654

>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway

Probab=100.00  E-value=5.4e-59  Score=439.10  Aligned_cols=166  Identities=43%  Similarity=0.719  Sum_probs=137.5

Q ss_pred             EEEEEeeecc----------CCCCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEe
Q 010753           77 VFYHTLEALP----------FQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVL  146 (502)
Q Consensus        77 ~~~~~~~~~~----------~~~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVl  146 (502)
                      +|...|+++|          ..++||||+||||||++|.++++  +|||+|+|+|..             ++++||||||
T Consensus         1 ~f~~~~~~~~~~~~~~~~~~~~~~gdKiiLP~s~L~~L~~~~~--~~P~~F~i~n~~-------------~~~~th~GVl   65 (176)
T PF03152_consen    1 KFDQTYRCYPVSFLPGADRPELEYGDKIILPPSALDELSRLNI--PYPMLFEISNPD-------------NGKRTHCGVL   65 (176)
T ss_dssp             -EEEEEEEEECCCSSTTS-CCCCCTTEEEE-HHHHHHHHHTT----SS-EEEEEETT-------------TTEEEEEEEE
T ss_pred             CccceEEEEeEEeecCCCCcccCCCCeEEcCHHHHHHHHhccC--CCCEEEEEecCC-------------CCcEEEEEEE
Confidence            3677777776          25799999999999999999888  899999999952             5789999999


Q ss_pred             eeeeCCCceeccHHHHHhcCCCCCCCCceEEEEEEecCCcceEEEeeccCCCCCCCChHHHHHHHhccCcccccCCEEEE
Q 010753          147 EFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTV  226 (502)
Q Consensus       147 EFsA~EG~v~LP~wm~~~L~~~~~~~~~~V~v~~~~LPkGt~vkLqP~~~~f~di~n~KavLE~~LR~~stLT~Gd~I~I  226 (502)
                      ||+|+||+|+||+|||++|++.   +++.|+|++++|||||||||||++.+|++++|||+|||++||||+|||+||+|.|
T Consensus        66 EFsA~eG~i~lP~wmm~~L~l~---~g~~V~v~~~~LPkgt~vkLqP~~~~F~~i~n~KavLE~~Lr~ystLT~Gd~I~i  142 (176)
T PF03152_consen   66 EFSAEEGTIYLPPWMMQNLGLQ---EGDIVRVEYVSLPKGTFVKLQPQSSDFLDISNPKAVLERALRNYSTLTKGDTISI  142 (176)
T ss_dssp             EE--CTTEEEE-CHHHHHHT-----TTEEEEEEEEE----SEEEEEESCHHHHCSS-HHHHHHHHHCC-SEEETTSEEEE
T ss_pred             EeEcCCCeEEeCccHHhhcCCC---CCCEEEEEEeECCCCCEEEEeECCCccccccchHHHHHhhcccCceeecCCEEEE
Confidence            9999999999999999999998   6889999999999999999999999999999999999999999999999999999


Q ss_pred             EECCEEEEEEEEEEcCCCceEEEcCceEEeccCC
Q 010753          227 NYGELAYKLKVLELKPSSSVSVLETDIEVDIVSP  260 (502)
Q Consensus       227 ~~~~~~y~l~V~e~~P~~aVsIidTDleVD~~~~  260 (502)
                      +|+++.|+|+|++++|++|||||||||+|||+||
T Consensus       143 ~~~~~~y~l~V~e~kP~~aV~IidTDl~vDf~~P  176 (176)
T PF03152_consen  143 EYNNKTYELDVVEVKPENAVSIIDTDLEVDFEPP  176 (176)
T ss_dssp             ECTTEEEEEEEEEECSSSCEE-SSS-SEEEE---
T ss_pred             EeCCEEEEEEEEEEcCCCEEEEEeCceEEEecCC
Confidence            9999999999999999999999999999999987

Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.

>COG5140 UFD1 Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.6e-48  Score=374.63  Aligned_cols=160  Identities=34%  Similarity=0.569  Sum_probs=153.5

Q ss_pred             CCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEeeeeeCCCceeccHHHHHhcCCC
Q 010753           89 GSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPS  168 (502)
Q Consensus        89 ~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVlEFsA~EG~v~LP~wm~~~L~~~  168 (502)
                      +.|+|||||||||..|++.++  .|||+|+|++.+             ..++||||||||+|+||.||||.|||+.|+++
T Consensus        43 NfGGKvilPpSaL~kLs~lni--~yPmlF~~s~~~-------------~~~~THgGVLEFiaEEGrVylP~WMm~tLs~e  107 (331)
T COG5140          43 NFGGKVILPPSALVKLSSLNI--QYPMLFEISHSD-------------GIYRTHGGVLEFIAEEGRVYLPSWMMQTLSME  107 (331)
T ss_pred             CcCceEEcCHHHHHHHHhhcc--CCceEEEEeccc-------------ceeEecccEEEEeecCCcEeehHHHHHhccCC
Confidence            799999999999999999998  899999999953             47899999999999999999999999999998


Q ss_pred             CCCCCceEEEEEEecCCcceEEEeeccCCCCCCCChHHHHHHHhccCcccccCCEEEEEECCEEEEEEEEEEcCC---Cc
Q 010753          169 DTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPS---SS  245 (502)
Q Consensus       169 ~~~~~~~V~v~~~~LPkGt~vkLqP~~~~f~di~n~KavLE~~LR~~stLT~Gd~I~I~~~~~~y~l~V~e~~P~---~a  245 (502)
                         +++.|+|+|..+|.|+||||+|++.+|+||+||||+||+.||||+|||+||+|.|.||++.|.++|.+++|+   ++
T Consensus       108 ---pgdlv~~~~td~plG~fVKL~PqSVdFLdI~dpkavLEn~LRNfstLt~~D~iei~ynd~v~~Ik~~~v~pe~S~~~  184 (331)
T COG5140         108 ---PGDLVVLRYTDFPLGKFVKLIPQSVDFLDIEDPKAVLENCLRNFSTLTEGDEIEIQYNDEVGSIKFTVVHPEPSANA  184 (331)
T ss_pred             ---CCcEEEEEeccccccceEEecccccceEeccChHHHHHHHHhhccccccCCEEEEEECCeeeEEEEEEeccCCCcce
Confidence               789999999999999999999999999999999999999999999999999999999999999999999997   59


Q ss_pred             eEEEcCceEEeccCCCCCCCc
Q 010753          246 VSVLETDIEVDIVSPDDMSAG  266 (502)
Q Consensus       246 VsIidTDleVD~~~~~~~~~~  266 (502)
                      ||||||||.|||.||.+|.+.
T Consensus       185 i~vveTDLvvDF~pPiGy~e~  205 (331)
T COG5140         185 IYVVETDLVVDFLPPIGYKEK  205 (331)
T ss_pred             EEEEecceeeeccCCccccch
Confidence            999999999999999998743

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.33  E-value=1.2e-09  Score=119.58  Aligned_cols=85  Identities=26%  Similarity=0.577  Sum_probs=72.5

Q ss_pred             cCcccccccCcccccchHHhHhhhccCceeeccccccCcccccccccCc---------ccCccCCCccC-----------
Q 010753          408 MDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDH---------VHCDKCGQGLQ-----------  467 (502)
Q Consensus       408 ~~~~~C~nC~k~~~~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H---------~hC~~Cgk~f~-----------  467 (502)
                      .+.+.|+.|++.|+...|..|...|. .++.|+   ||+.|.+..|..|         +.|+.|++.|.           
T Consensus       451 ~~H~~C~~Cgk~f~~s~LekH~~~~H-kpv~Cp---Cg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~  526 (567)
T PLN03086        451 KNHVHCEKCGQAFQQGEMEKHMKVFH-EPLQCP---CGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDR  526 (567)
T ss_pred             ccCccCCCCCCccchHHHHHHHHhcC-CCccCC---CCCCcchhHHHhhhhccCCCCceeCCCCCCccccCccccchhhh
Confidence            45578999999999999999999774 899998   9998877888888         56999998885           


Q ss_pred             hhhHHHhhhcccc-eeeec-CCccccccccc
Q 010753          468 RREMEKHMKVFHE-QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       468 ~s~l~kH~~i~Ht-p~~C~-Cg~~f~~~~~~  496 (502)
                      .+.|..|..++.. ++.|. ||+.|..+.|-
T Consensus       527 ~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlrdm~  557 (567)
T PLN03086        527 LRGMSEHESICGSRTAPCDSCGRSVMLKEMD  557 (567)
T ss_pred             hhhHHHHHHhcCCcceEccccCCeeeehhHH
Confidence            2479999998544 99999 99999988875

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.27  E-value=1.6e-12  Score=129.65  Aligned_cols=90  Identities=26%  Similarity=0.634  Sum_probs=77.1

Q ss_pred             ccCcccccccCccccc-chHHhHhhhccCceeeccccccCccccc-----ccccCc-----ccCccCCCccC-hhhHHHh
Q 010753          407 EMDTVQCKNCKRFIPS-RSIVLHEAYCSRHSVACQHAGCGMVLRT-----EEARDH-----VHCDKCGQGLQ-RREMEKH  474 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~~-~~l~lHe~~C~rn~~~C~~~~Cgk~F~k-----~~l~~H-----~hC~~Cgk~f~-~s~l~kH  474 (502)
                      +...++|++|+|.+-+ .-|.+|.+.+. -+++|+.  |||.|.+     ..+..|     |.|++|+|+|. +++|.-|
T Consensus       158 s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~i--CGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH  234 (279)
T KOG2462|consen  158 SKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGI--CGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH  234 (279)
T ss_pred             ccccccCCCCCceeeehHHHhhHhhccC-CCccccc--ccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHH
Confidence            4678999999999964 88999998332 5789998  9999997     555555     88999999999 9999999


Q ss_pred             hhcccc---eeeec-CCccccccccc-----ccCC
Q 010753          475 MKVFHE---QCSCP-CGVVLENAAMV-----SYCP  500 (502)
Q Consensus       475 ~~i~Ht---p~~C~-Cg~~f~~~~~~-----~~Cp  500 (502)
                      |++ |+   +|+|. |+|+|.+.+.+     +-|.
T Consensus       235 mQT-HS~~K~~qC~~C~KsFsl~SyLnKH~ES~C~  268 (279)
T KOG2462|consen  235 MQT-HSDVKKHQCPRCGKSFALKSYLNKHSESACL  268 (279)
T ss_pred             HHh-hcCCccccCcchhhHHHHHHHHHHhhhhccc
Confidence            999 54   99999 99999999988     6664

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.00  E-value=1.3e-10  Score=115.99  Aligned_cols=90  Identities=21%  Similarity=0.557  Sum_probs=78.5

Q ss_pred             ccccCcccccccCcccc-cchHHhHhh-hc---cCceeeccccccCccccc-ccccCc-------ccCccCCCccC-hhh
Q 010753          405 SIEMDTVQCKNCKRFIP-SRSIVLHEA-YC---SRHSVACQHAGCGMVLRT-EEARDH-------VHCDKCGQGLQ-RRE  470 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~-~~~l~lHe~-~C---~rn~~~C~~~~Cgk~F~k-~~l~~H-------~hC~~Cgk~f~-~s~  470 (502)
                      .....-++|..|||... ..+|..|.- ||   .++-+.|+.  |||+|.+ ..|+-|       ..|..|||+|. .=-
T Consensus       125 ~~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~--C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWL  202 (279)
T KOG2462|consen  125 AAKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKY--CGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWL  202 (279)
T ss_pred             cccCCceeccccccccccccccchhhcccccccccccccCCC--CCceeeehHHHhhHhhccCCCcccccccccccchHH
Confidence            34567899999999997 599999998 77   477899999  9999999 888888       46999999999 888


Q ss_pred             HHHhhhcccc--eeeec-CCccccccccc
Q 010753          471 MEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       471 l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |+-|.|.|.+  ||.|+ |+|+|..++-+
T Consensus       203 LQGHiRTHTGEKPF~C~hC~kAFADRSNL  231 (279)
T KOG2462|consen  203 LQGHIRTHTGEKPFSCPHCGKAFADRSNL  231 (279)
T ss_pred             hhcccccccCCCCccCCcccchhcchHHH
Confidence            9999999443  99999 99999988765

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=98.59  E-value=6.7e-09  Score=114.24  Aligned_cols=83  Identities=19%  Similarity=0.594  Sum_probs=70.5

Q ss_pred             CcccccccCccccc-chHHhHhhhccCc---eeeccccccCccccc-ccccCc----------------------ccCcc
Q 010753          409 DTVQCKNCKRFIPS-RSIVLHEAYCSRH---SVACQHAGCGMVLRT-EEARDH----------------------VHCDK  461 (502)
Q Consensus       409 ~~~~C~nC~k~~~~-~~l~lHe~~C~rn---~~~C~~~~Cgk~F~k-~~l~~H----------------------~hC~~  461 (502)
                      -..+|..|.+...+ ..|.-|..+-.++   |+-|+.  |...|-. ..|++|                      |+|++
T Consensus       209 qlltcpycdrgykrltslkeHikyrhekne~nfsC~l--CsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtE  286 (1007)
T KOG3623|consen  209 QLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCML--CSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTE  286 (1007)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchh--hhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccc
Confidence            35689999999975 7788888755444   499999  9999987 777777                      78999


Q ss_pred             CCCccC-hhhHHHhhhcccc--eeeec-CCcccccc
Q 010753          462 CGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENA  493 (502)
Q Consensus       462 Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~  493 (502)
                      |||+|. +..|+.|.|||-+  ||.|+ |+|.|+.+
T Consensus       287 CgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHS  322 (1007)
T KOG3623|consen  287 CGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHS  322 (1007)
T ss_pred             cchhhhhHHHHHhhheeecCCCCcCCcccccccccC
Confidence            999999 9999999999444  99999 99999874

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.48  E-value=2.6e-08  Score=96.10  Aligned_cols=86  Identities=24%  Similarity=0.530  Sum_probs=72.1

Q ss_pred             ccccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhH
Q 010753          405 SIEMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREM  471 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l  471 (502)
                      +.+.|.+.|.-|+|.|. .+-|..|.. |..-+.|.|.-  |||.|.. -+|++|         |.|..|+|+|. +-+|
T Consensus       112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsl  189 (267)
T KOG3576|consen  112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSL  189 (267)
T ss_pred             CCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccchhhhhHHHHhhccH
Confidence            44678899999999998 588888888 66778899998  9999998 888888         78999999999 8899


Q ss_pred             HHhhhcccc-------------eeeec-CCccccc
Q 010753          472 EKHMKVFHE-------------QCSCP-CGVVLEN  492 (502)
Q Consensus       472 ~kH~~i~Ht-------------p~~C~-Cg~~f~~  492 (502)
                      +.|.+--|+             -|.|. ||.+-..
T Consensus       190 eshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~  224 (267)
T KOG3576|consen  190 ESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSER  224 (267)
T ss_pred             HHHHHHHcCchHHHHHHHhhhheeeecccCCCCCC
Confidence            999664364             68899 9986544

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=98.41  E-value=2.7e-08  Score=109.53  Aligned_cols=65  Identities=14%  Similarity=0.451  Sum_probs=43.4

Q ss_pred             CcccccccCccccc-chHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc--eee
Q 010753          409 DTVQCKNCKRFIPS-RSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE--QCS  483 (502)
Q Consensus       409 ~~~~C~nC~k~~~~-~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~  483 (502)
                      ..|.|..|.|.|-+ ++|..|.= |.|.+||                    .|.+|.|+|. +..|..|+|.|-+  ||+
T Consensus       893 gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPy--------------------qC~iCkKAFKHKHHLtEHkRLHSGEKPfQ  952 (1007)
T KOG3623|consen  893 GMYACDQCDKAFQKQSSLARHKYEHSGQRPY--------------------QCIICKKAFKHKHHLTEHKRLHSGEKPFQ  952 (1007)
T ss_pred             ccchHHHHHHHHHhhHHHHHhhhhhcCCCCc--------------------ccchhhHhhhhhhhhhhhhhhccCCCcch
Confidence            34555555555543 55555553 5555554                    4556778888 8889999998443  999


Q ss_pred             ec-CCcccccc
Q 010753          484 CP-CGVVLENA  493 (502)
Q Consensus       484 C~-Cg~~f~~~  493 (502)
                      |+ |+|.|+.+
T Consensus       953 CdKClKRFSHS  963 (1007)
T KOG3623|consen  953 CDKCLKRFSHS  963 (1007)
T ss_pred             hhhhhhhcccc
Confidence            98 99988763

>PHA02768 hypothetical protein; Provisional

Probab=98.38  E-value=1.3e-07  Score=73.75  Aligned_cols=40  Identities=18%  Similarity=0.373  Sum_probs=35.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccceeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHEQCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Htp~~C~-Cg~~f~~~~~~  496 (502)
                      |.|+.||+.|. .++|..|+++|+.|++|. |++.|.+.+.+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcCCcccCCcccceeccccee
Confidence            68999999999 999999999955599999 99999987654

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.14  E-value=3.2e-07  Score=88.75  Aligned_cols=61  Identities=20%  Similarity=0.557  Sum_probs=50.6

Q ss_pred             cCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCcccccccc
Q 010753          433 SRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAM  495 (502)
Q Consensus       433 ~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~  495 (502)
                      ..+.+.|..  |||.|.- .-|.+|         +-|..|||+|. .-.|++|+++|.+  ||+|. |+|+|+++-.
T Consensus       114 d~d~ftCrv--CgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcs  188 (267)
T KOG3576|consen  114 DQDSFTCRV--CGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCS  188 (267)
T ss_pred             CCCeeeeeh--hhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhcc
Confidence            456699998  9999986 555555         45899999999 9999999999443  99999 9999998643

>PHA00733 hypothetical protein

Probab=98.00  E-value=2e-06  Score=78.18  Aligned_cols=72  Identities=17%  Similarity=0.242  Sum_probs=57.6

Q ss_pred             ccCcccccccCccccc-------chHHhHhhhccCceeeccccccCccccc-ccccCc-------ccCccCCCccC-hhh
Q 010753          407 EMDTVQCKNCKRFIPS-------RSIVLHEAYCSRHSVACQHAGCGMVLRT-EEARDH-------VHCDKCGQGLQ-RRE  470 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~~-------~~l~lHe~~C~rn~~~C~~~~Cgk~F~k-~~l~~H-------~hC~~Cgk~f~-~s~  470 (502)
                      ..+.+.|..|++.|..       .+|..|..+..+++|.|+.  ||+.|.. ..|..|       +.|+.|+++|. ..+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPL--CLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCC--CCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHH
Confidence            3567889999999952       3466665666789999998  9999998 666555       57999999999 899


Q ss_pred             HHHhhhcccc
Q 010753          471 MEKHMKVFHE  480 (502)
Q Consensus       471 l~kH~~i~Ht  480 (502)
                      |..|+.-.|.
T Consensus       115 L~~H~~~~h~  124 (128)
T PHA00733        115 TLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC
Confidence            9999887775

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=97.92  E-value=1.5e-06  Score=89.87  Aligned_cols=88  Identities=17%  Similarity=0.397  Sum_probs=69.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hc--cCceeeccccccCccccc-ccccCc-------ccCccCCCccC-hhhHHH
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YC--SRHSVACQHAGCGMVLRT-EEARDH-------VHCDKCGQGLQ-RREMEK  473 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C--~rn~~~C~~~~Cgk~F~k-~~l~~H-------~hC~~Cgk~f~-~s~l~k  473 (502)
                      +++-..|..||..|. +.+|.-|-+ -.  ..|+|.|.+  |-|.|.. .-|..|       |.|+.|..+-+ .++|..
T Consensus       204 ~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~--C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~  281 (467)
T KOG3608|consen  204 NEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQ--CFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTT  281 (467)
T ss_pred             CCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHH--HHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHH
Confidence            466778999999997 577888875 22  456799998  9999987 444433       78999987777 999999


Q ss_pred             hhhcccc---eeeec-CCccccccccc
Q 010753          474 HMKVFHE---QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       474 H~~i~Ht---p~~C~-Cg~~f~~~~~~  496 (502)
                      |++.-|.   |++|+ |++.|.+.+.+
T Consensus       282 H~r~rHs~dkpfKCd~Cd~~c~~esdL  308 (467)
T KOG3608|consen  282 HIRYRHSKDKPFKCDECDTRCVRESDL  308 (467)
T ss_pred             HHHhhhccCCCccccchhhhhccHHHH
Confidence            9998886   99999 99988877655

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=97.81  E-value=6.7e-06  Score=85.08  Aligned_cols=81  Identities=19%  Similarity=0.478  Sum_probs=56.4

Q ss_pred             cccccccCcccc-cchHHhHhh--hccCceeeccccccCccccc-ccccCc--------ccCcc--CCCccC-hhhHHHh
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA--YCSRHSVACQHAGCGMVLRT-EEARDH--------VHCDK--CGQGLQ-RREMEKH  474 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~--~C~rn~~~C~~~~Cgk~F~k-~~l~~H--------~hC~~--Cgk~f~-~s~l~kH  474 (502)
                      .|+|+-|.-.-+ .+.|..|.+  |..-+|++|..  |.+.|.+ ++|.+|        |.|++  |-.+|. ..++.+|
T Consensus       263 ~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~--Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H  340 (467)
T KOG3608|consen  263 CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDE--CDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRH  340 (467)
T ss_pred             cccccccccCCCChHHHHHHHHhhhccCCCccccc--hhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHH
Confidence            344444444443 245556665  55677888887  8888888 788777        56877  876666 7888888


Q ss_pred             hhcccc-----eeeec-CCccccc
Q 010753          475 MKVFHE-----QCSCP-CGVVLEN  492 (502)
Q Consensus       475 ~~i~Ht-----p~~C~-Cg~~f~~  492 (502)
                      ++.+|.     +|+|- |++.|..
T Consensus       341 ~~evhEg~np~~Y~CH~Cdr~ft~  364 (467)
T KOG3608|consen  341 FLEVHEGNNPILYACHCCDRFFTS  364 (467)
T ss_pred             HHHhccCCCCCceeeecchhhhcc
Confidence            887774     88888 8887765

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=97.77  E-value=1.2e-05  Score=90.53  Aligned_cols=83  Identities=19%  Similarity=0.518  Sum_probs=72.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc-------------ccCc---cCCCccC
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH-------------VHCD---KCGQGLQ  467 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H-------------~hC~---~Cgk~f~  467 (502)
                      ..|+-+|--|.|... ++.|.||.+ |.|++||+|..  ||..|.. .+|+.|             +.|+   .|-+.|.
T Consensus       602 ~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft  679 (958)
T KOG1074|consen  602 RTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT  679 (958)
T ss_pred             cCCccceeeeeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccccCccccccccCCchhhhccccc
Confidence            467889999999998 699999999 99999999998  9999998 999999             4599   9999998


Q ss_pred             -hhhHHHhhhcccc---------------eeeec-CCcccc
Q 010753          468 -RREMEKHMKVFHE---------------QCSCP-CGVVLE  491 (502)
Q Consensus       468 -~s~l~kH~~i~Ht---------------p~~C~-Cg~~f~  491 (502)
                       .-.|..|.++|-.               ..+|. |.+.|.
T Consensus       680 n~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~  720 (958)
T KOG1074|consen  680 NAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFS  720 (958)
T ss_pred             ccccccceEEeecCCCCCCCcccccccchhcccchhhhccc
Confidence             8999999999541               35699 998884

>PHA00732 hypothetical protein

Probab=97.62  E-value=2.9e-05  Score=65.08  Aligned_cols=38  Identities=21%  Similarity=0.487  Sum_probs=32.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccceeeec-CCccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHEQCSCP-CGVVLENAA  494 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Htp~~C~-Cg~~f~~~~  494 (502)
                      +.|+.||+.|. .++|..|++.+|+++.|+ ||+.|.+..
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~~l~   41 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTLTKCPVCNKSYRRLN   41 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCCCccCCCCCEeCChh
Confidence            57899999998 999999998668889999 999998644

>PHA02768 hypothetical protein; Provisional

Probab=97.57  E-value=3.3e-05  Score=60.49  Aligned_cols=41  Identities=15%  Similarity=0.286  Sum_probs=34.8

Q ss_pred             cccccccCcccc-cchHHhHhhhccCceeeccccccCccccc-ccc
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEAYCSRHSVACQHAGCGMVLRT-EEA  453 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k-~~l  453 (502)
                      -|.|+.|||.|. .++|..|++.+. ++++|..  ||++|.+ ++|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~--C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSN--CKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-CcccCCc--ccceeccccee
Confidence            478999999998 599999999443 7999998  9999987 554

>PHA00733 hypothetical protein

Probab=97.42  E-value=4.4e-05  Score=69.44  Aligned_cols=64  Identities=13%  Similarity=0.287  Sum_probs=50.5

Q ss_pred             hccCceeeccccccCccccc-ccccCc--------------ccCccCCCccC-hhhHHHhhhcccceeeec-CCcccccc
Q 010753          431 YCSRHSVACQHAGCGMVLRT-EEARDH--------------VHCDKCGQGLQ-RREMEKHMKVFHEQCSCP-CGVVLENA  493 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k-~~l~~H--------------~hC~~Cgk~f~-~s~l~kH~~i~Htp~~C~-Cg~~f~~~  493 (502)
                      --..+.+.|..  |++.|.. ..|.+|              |.|+.||+.|. .++|..|++++-.++.|. |++.|.+.
T Consensus        35 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~  112 (128)
T PHA00733         35 TPEQKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNT  112 (128)
T ss_pred             ChhhhhHHHHH--HhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCH
Confidence            33466799998  9999986 333332              78999999999 999999999732389999 99999886


Q ss_pred             ccc
Q 010753          494 AMV  496 (502)
Q Consensus       494 ~~~  496 (502)
                      .-+
T Consensus       113 ~sL  115 (128)
T PHA00733        113 DST  115 (128)
T ss_pred             HHH
Confidence            543

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.10  E-value=8.7e-05  Score=78.51  Aligned_cols=73  Identities=19%  Similarity=0.419  Sum_probs=53.2

Q ss_pred             cccCcccccccCccccc-chHHhHhhhc-cCceeeccccccCccccc-ccccCc--cc----------------------
Q 010753          406 IEMDTVQCKNCKRFIPS-RSIVLHEAYC-SRHSVACQHAGCGMVLRT-EEARDH--VH----------------------  458 (502)
Q Consensus       406 ~~~~~~~C~nC~k~~~~-~~l~lHe~~C-~rn~~~C~~~~Cgk~F~k-~~l~~H--~h----------------------  458 (502)
                      ...+.|.|.-|+--|.- -.|..|.=-| -+--|+|++  |+|||.= .+|..|  ||                      
T Consensus       263 n~iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPE--C~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ra  340 (500)
T KOG3993|consen  263 NVIGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPE--CDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRA  340 (500)
T ss_pred             ccHHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCc--ccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhh
Confidence            35678999999987753 4555554322 233499999  9999997 677666  44                      


Q ss_pred             ------------------CccCCCccC-hhhHHHhhhcccc
Q 010753          459 ------------------CDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       459 ------------------C~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                                        |.+|||.|. ...|.||+..||.
T Consensus       341 e~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  341 EVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             hhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence                              888888888 7888888777664

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=96.92  E-value=0.00054  Score=45.51  Aligned_cols=24  Identities=17%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             hHHhHhh-hccCceeeccccccCcccc
Q 010753          424 SIVLHEA-YCSRHSVACQHAGCGMVLR  449 (502)
Q Consensus       424 ~l~lHe~-~C~rn~~~C~~~~Cgk~F~  449 (502)
                      +|..|++ |.++++|.|+.  |++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~--C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPY--CGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESS--SSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCC--CcCeeC
Confidence            4788998 88999999999  999996

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=96.91  E-value=0.00043  Score=46.00  Aligned_cols=23  Identities=30%  Similarity=0.847  Sum_probs=19.3

Q ss_pred             hHHHhhhcccc--eeeec-CCccccc
Q 010753          470 EMEKHMKVFHE--QCSCP-CGVVLEN  492 (502)
Q Consensus       470 ~l~kH~~i~Ht--p~~C~-Cg~~f~~  492 (502)
                      +|.+|+++|..  ||.|+ |+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            58999999443  99999 9999964

...

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=96.65  E-value=0.00067  Score=76.88  Aligned_cols=50  Identities=18%  Similarity=0.426  Sum_probs=44.1

Q ss_pred             ccCcccccccCccccc-chHHhHhh-hccCceeeccccccCccccc-ccccCccc
Q 010753          407 EMDTVQCKNCKRFIPS-RSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDHVH  458 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~~-~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H~h  458 (502)
                      ......|.-|.|.|.. +.|++|.+ |++++||+|+.  ||..|.. ..|+.||+
T Consensus       350 ~~~khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnv--CG~~FSTkGNLKvH~~  402 (958)
T KOG1074|consen  350 PFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNV--CGNRFSTKGNLKVHFQ  402 (958)
T ss_pred             ccccchhhhhHhhcCchhhhhhhhhccCCCCCeeecc--cccccccccceeeeee
Confidence            3456789999999975 99999999 99999999998  9999997 88888853

>PHA00616 hypothetical protein

Probab=95.99  E-value=0.0022  Score=48.19  Aligned_cols=29  Identities=21%  Similarity=0.552  Sum_probs=25.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      +.|+.||+.|. +++|.+|++.+|.  |++|+
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            57889999999 9999999999886  88875

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=95.98  E-value=0.0029  Score=39.62  Aligned_cols=23  Identities=30%  Similarity=0.915  Sum_probs=18.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.|++.|. ...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            67999999999 999999999866

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=95.93  E-value=0.0013  Score=69.83  Aligned_cols=57  Identities=23%  Similarity=0.521  Sum_probs=50.4

Q ss_pred             eeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc-----------e-------------
Q 010753          437 VACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE-----------Q-------------  481 (502)
Q Consensus       437 ~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht-----------p-------------  481 (502)
                      |+|.-  |...|-- -.|.+|         |.|++|+|.|. ..+|.-|.|. |.           |             
T Consensus       268 yiCqL--CK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRW-HKPR~eaa~a~~~P~k~~~~~rae~~e  344 (500)
T KOG3993|consen  268 YICQL--CKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRW-HKPRPEAAKAGSPPPKQAVETRAEVQE  344 (500)
T ss_pred             HHHHH--HHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcc-cCCchhhhhcCCCChhhhhhhhhhhhh
Confidence            89998  9999987 678888         88999999999 9999999887 53           2             


Q ss_pred             ------------eeec-CCccccccccc
Q 010753          482 ------------CSCP-CGVVLENAAMV  496 (502)
Q Consensus       482 ------------~~C~-Cg~~f~~~~~~  496 (502)
                                  |.|. |+|.|++..++
T Consensus       345 a~rsg~dss~gi~~C~~C~KkFrRqAYL  372 (500)
T KOG3993|consen  345 AERSGDDSSSGIFSCHTCGKKFRRQAYL  372 (500)
T ss_pred             ccccCCcccCceeecHHhhhhhHHHHHH
Confidence                        6799 99999998877

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=95.86  E-value=0.0061  Score=47.12  Aligned_cols=51  Identities=24%  Similarity=0.484  Sum_probs=36.5

Q ss_pred             CcccccccCcccccchHHhHhh--hcc-CceeeccccccCcccccccccCcccCccCCCccChhhHHHhhhcccc
Q 010753          409 DTVQCKNCKRFIPSRSIVLHEA--YCS-RHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHE  480 (502)
Q Consensus       409 ~~~~C~nC~k~~~~~~l~lHe~--~C~-rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~~s~l~kH~~i~Ht  480 (502)
                      +.|.|+.|++.|....|..|-.  |.. .++++||.                    |...+ ..+|..|+.++|.
T Consensus         1 ~~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPi--------------------C~~~~-~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    1 DSFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPI--------------------CSSRV-TDNLIRHLNSQHR   54 (54)
T ss_pred             CCcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCC--------------------chhhh-hhHHHHHHHHhcC
Confidence            4688999999888899999975  554 35676664                    43333 3488888887763

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.74  E-value=0.003  Score=40.01  Aligned_cols=21  Identities=24%  Similarity=0.817  Sum_probs=18.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      |.|+.|++.|. ++.|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            56889999999 9999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=95.72  E-value=0.048  Score=64.69  Aligned_cols=9  Identities=56%  Similarity=1.084  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 010753           11 KLEKEQKER   19 (502)
Q Consensus        11 k~~~e~~~r   19 (502)
                      ++++|.++|
T Consensus       462 r~e~e~~er  470 (1021)
T PTZ00266        462 RLEREERER  470 (1021)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.36  E-value=0.0068  Score=60.79  Aligned_cols=48  Identities=19%  Similarity=0.545  Sum_probs=45.6

Q ss_pred             cccccccCcccccchHHhHhhhccCceeeccccccCcccccccccCcccC
Q 010753          410 TVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHC  459 (502)
Q Consensus       410 ~~~C~nC~k~~~~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC  459 (502)
                      .++|.+||-.+++..+-.|.-.|.--.|.|-.  ||++|-+.+..+|..|
T Consensus         3 ~FtCnvCgEsvKKp~vekH~srCrn~~fSCID--C~k~F~~~sYknH~kC   50 (276)
T KOG2186|consen    3 FFTCNVCGESVKKPQVEKHMSRCRNAYFSCID--CGKTFERVSYKNHTKC   50 (276)
T ss_pred             EEehhhhhhhccccchHHHHHhccCCeeEEee--cccccccchhhhhhhh
Confidence            47899999999999999999999889999999  9999999999999999

>PHA00732 hypothetical protein

Probab=94.94  E-value=0.011  Score=49.58  Aligned_cols=37  Identities=16%  Similarity=0.290  Sum_probs=29.2

Q ss_pred             cccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT  450 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k  450 (502)
                      ++.|..|++.|. ..+|..|.+ +..  ++.|+.  ||+.|.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~--CgKsF~~   39 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPV--CNKSYRR   39 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCC--CCCEeCC
Confidence            468999999997 489999986 332  358998  9998874

>PHA00616 hypothetical protein

Probab=94.86  E-value=0.011  Score=44.56  Aligned_cols=31  Identities=13%  Similarity=0.353  Sum_probs=27.8

Q ss_pred             cccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      +++|..||+.|. +..|..|.+ |++++++.|.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            579999999998 599999998 9999999886

>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains

Probab=94.65  E-value=0.1  Score=41.51  Aligned_cols=41  Identities=27%  Similarity=0.447  Sum_probs=33.6

Q ss_pred             cccccCCEEEEEECCEEEEEEEEEEcCCCceEEEc-CceEEe
Q 010753          216 ATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLE-TDIEVD  256 (502)
Q Consensus       216 stLT~Gd~I~I~~~~~~y~l~V~e~~P~~aVsIid-TDleVD  256 (502)
                      --+++||+|.|.+.+..+.|.|.+++|.+.|-|-+ |.+++-
T Consensus        17 ~pv~~Gd~i~~~~~~~~~~~~V~~~~P~~~v~it~~T~i~i~   58 (64)
T PF02933_consen   17 RPVTKGDTIVFPFFGQALPFKVVSTEPSGPVIITEDTEIEIK   58 (64)
T ss_dssp             EEEETT-EEEEEETTEEEEEEEEEECSSSEEEEETTSEEEES
T ss_pred             CCccCCCEEEEEeCCcEEEEEEEEEEcCCCEEECCCcEEEEc
Confidence            68999999999999999999999999998665543 446654

Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.54  E-value=0.017  Score=48.12  Aligned_cols=69  Identities=19%  Similarity=0.407  Sum_probs=21.4

Q ss_pred             cccccCccccc-chHHhHhhhccCceeecccc--ccCccccc--ccccCcccCccCCCccC-hhhHHHhhhcc-cc
Q 010753          412 QCKNCKRFIPS-RSIVLHEAYCSRHSVACQHA--GCGMVLRT--EEARDHVHCDKCGQGLQ-RREMEKHMKVF-HE  480 (502)
Q Consensus       412 ~C~nC~k~~~~-~~l~lHe~~C~rn~~~C~~~--~Cgk~F~k--~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~-Ht  480 (502)
                      +|.-|+..|+. ..|..|..-...-.+.....  ....+...  ..+..+|.|..|++.|. ...|..|++.. |.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~   76 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHHK   76 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTTT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCccCC
Confidence            69999999985 78888876222222211110  01122221  33445699999999999 99999999953 53

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=94.38  E-value=0.015  Score=45.13  Aligned_cols=47  Identities=30%  Similarity=0.689  Sum_probs=27.5

Q ss_pred             cccccc--cCcccccchHHhHhh-hccCceeeccc--cccCcccccccccCc
Q 010753          410 TVQCKN--CKRFIPSRSIVLHEA-YCSRHSVACQH--AGCGMVLRTEEARDH  456 (502)
Q Consensus       410 ~~~C~n--C~k~~~~~~l~lHe~-~C~rn~~~C~~--~~Cgk~F~k~~l~~H  456 (502)
                      ...|+|  |...|++..|..|.. .|...++.|+.  .||+..+.+.++.+|
T Consensus         9 ~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    9 PVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             EEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             EeeCCCCCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            467877  666677888888887 77777777765  446666655555444

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.34  E-value=0.27  Score=56.25  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=17.2

Q ss_pred             ChHHHHHHHhccC--cccccCCEEEEE
Q 010753          203 NQKAVLETSLRQH--ATLSQDDVLTVN  227 (502)
Q Consensus       203 n~KavLE~~LR~~--stLT~Gd~I~I~  227 (502)
                      +.+|+.+-.-|++  .|.-.||+|.|.
T Consensus       695 kyrAly~FeaRs~dEisf~pGDII~V~  721 (1118)
T KOG1029|consen  695 KYRALYPFEARSHDEISFEPGDIIIVF  721 (1118)
T ss_pred             EEeeecccccCCcccccccCCCEEEEe
Confidence            4566666667776  577778888774

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=94.24  E-value=0.026  Score=43.59  Aligned_cols=36  Identities=25%  Similarity=0.712  Sum_probs=30.5

Q ss_pred             ccCccCCCccChhhHHHhhhcccc----eeeec-CCccccc
Q 010753          457 VHCDKCGQGLQRREMEKHMKVFHE----QCSCP-CGVVLEN  492 (502)
Q Consensus       457 ~hC~~Cgk~f~~s~l~kH~~i~Ht----p~~C~-Cg~~f~~  492 (502)
                      |.||.||+.|...+|..|....|.    .+.|+ |...+..
T Consensus         3 f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~   43 (54)
T PF05605_consen    3 FTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVTD   43 (54)
T ss_pred             cCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence            679999998888899999888885    78899 9986654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.29  E-value=0.045  Score=36.17  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=20.5

Q ss_pred             cccccccCcccccchHHhHhhhc
Q 010753          410 TVQCKNCKRFIPSRSIVLHEAYC  432 (502)
Q Consensus       410 ~~~C~nC~k~~~~~~l~lHe~~C  432 (502)
                      ..+|..||+.|....|..|+..|
T Consensus         2 l~~C~~CgR~F~~~~l~~H~~~C   24 (25)
T PF13913_consen    2 LVPCPICGRKFNPDRLEKHEKIC   24 (25)
T ss_pred             CCcCCCCCCEECHHHHHHHHHhc
Confidence            46799999999999999999876

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.11  E-value=0.52  Score=54.00  Aligned_cols=21  Identities=19%  Similarity=0.223  Sum_probs=13.4

Q ss_pred             CcccccCCEEEEEECCEEEEE
Q 010753          215 HATLSQDDVLTVNYGELAYKL  235 (502)
Q Consensus       215 ~stLT~Gd~I~I~~~~~~y~l  235 (502)
                      +-..++||+|+|--....++|
T Consensus       829 dLsFskgd~I~VlekqemwW~  849 (1118)
T KOG1029|consen  829 DLSFSKGDTITVLEKQEMWWF  849 (1118)
T ss_pred             cccccCCCeeeeehhccceec
Confidence            456788999988544334444

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=92.80  E-value=0.044  Score=35.99  Aligned_cols=23  Identities=22%  Similarity=0.660  Sum_probs=18.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      +.|+.|++.|. ...|..|++.||
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCccCCccCChhHHHHHhHHhc
Confidence            45778888888 888888888755

>smart00355 ZnF_C2H2 zinc finger

Probab=92.54  E-value=0.072  Score=33.37  Aligned_cols=21  Identities=24%  Similarity=0.825  Sum_probs=18.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      +.|+.|+++|. .++|..|+++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH
Confidence            46899999999 9999999986

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=92.32  E-value=0.047  Score=42.34  Aligned_cols=47  Identities=32%  Similarity=0.735  Sum_probs=33.6

Q ss_pred             HhhhccCceeeccccccCcccccccccCc---------ccCcc----CCCccChhhHHHh
Q 010753          428 HEAYCSRHSVACQHAGCGMVLRTEEARDH---------VHCDK----CGQGLQRREMEKH  474 (502)
Q Consensus       428 He~~C~rn~~~C~~~~Cgk~F~k~~l~~H---------~hC~~----Cgk~f~~s~l~kH  474 (502)
                      |+..|...++.|+.++|...+.+.++..|         ..|+.    |+..+....|..|
T Consensus         1 H~~~C~~~~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    1 HEEECPFRPVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             HHTTSTTSEEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CcccCCCCEeeCCCCCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            78889999999998545577999999998         46888    8877778888877

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=91.35  E-value=5.8  Score=45.83  Aligned_cols=136  Identities=15%  Similarity=0.107  Sum_probs=91.2

Q ss_pred             cCCCCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEee-ee--eCCCceeccHHHH
Q 010753           86 PFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLE-FT--ADEGFVGLPPHVW  162 (502)
Q Consensus        86 ~~~~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVlE-Fs--A~EG~v~LP~wm~  162 (502)
                      +.....+.+-|.|+++.+|-   .. ++- +-+|..               .++.+.+-|.. +.  .+.|.|.+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (733)
T TIGR01243        11 PRDVGRGIVRIDRQTAARLG---VE-PGD-FVEIEK---------------GDRSVVAIVWPLRPDDEGRGIIRMDGYLR   70 (733)
T ss_pred             ccCCCCCeEeeCHHHHHhcC---CC-CCC-EEEEec---------------CCCceeEEEEecCccccCCCEEeecHHHH
Confidence            34445678889999999882   21 111 222331               13345555553 22  2459999999999


Q ss_pred             HhcCCCCCCCCceEEEEEEecCCcceEEEeeccCCCCCCCChHHHHHHHhccCcccccCCEEEEEECCEEEEEEEEEEcC
Q 010753          163 RNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKP  242 (502)
Q Consensus       163 ~~L~~~~~~~~~~V~v~~~~LPkGt~vkLqP~~~~f~di~n~KavLE~~LR~~stLT~Gd~I~I~~~~~~y~l~V~e~~P  242 (502)
                      .++++.   .++.|+|+.+.+|.+..|.+.|... ...-.+...++-..|.+ ..|++||.|.+.+.+..+.|.|....|
T Consensus        71 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~v~~~~p  145 (733)
T TIGR01243        71 ANAGVT---IGDTVTVERAEVKEAKKVVLAPTQP-IRFGRDFVDYVKEFLLG-KPISKGETVIVPVLEGALPFVVVSTQP  145 (733)
T ss_pred             hhcCCC---CCCeEEEeecCCCccceEeeccccc-cccccchHHHHHHHHcC-CCCCCCCEEEecccCcceeEEEEecCC
Confidence            999987   5789999988999999999999532 11112222333333332 579999999999877678889999999


Q ss_pred             CCce
Q 010753          243 SSSV  246 (502)
Q Consensus       243 ~~aV  246 (502)
                      ...+
T Consensus       146 ~~~~  149 (733)
T TIGR01243       146 AGFV  149 (733)
T ss_pred             CCcE
Confidence            6544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]

Probab=91.32  E-value=0.58  Score=51.30  Aligned_cols=44  Identities=41%  Similarity=0.598  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010753            4 ELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAA   47 (502)
Q Consensus         4 ~l~~~~~k~~~e~~~r~~~~~~~~~~e~~~~~~a~~~~~~~~~~   47 (502)
                      |-|++.+.|+.|-+.+++.||+|.|.||..||+...+||-|.|+
T Consensus       406 ear~rkqqleae~e~kreearrkaeeer~~keee~arrefirqe  449 (708)
T KOG3654|consen  406 EARRRKQQLEAEKEQKREEARRKAEEERAPKEEEVARREFIRQE  449 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhhhHHHHHHHH
Confidence            34555666677777777777777777777666666666666553

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=91.13  E-value=0.13  Score=33.96  Aligned_cols=21  Identities=38%  Similarity=0.814  Sum_probs=18.7

Q ss_pred             ccCccCCCccChhhHHHhhhc
Q 010753          457 VHCDKCGQGLQRREMEKHMKV  477 (502)
Q Consensus       457 ~hC~~Cgk~f~~s~l~kH~~i  477 (502)
                      ..|+.||..|..+.|.+|+++
T Consensus         3 ~~C~~CgR~F~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKFNPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEECHHHHHHHHHh
Confidence            369999999999999999887

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=91.13  E-value=0.92  Score=52.06  Aligned_cols=16  Identities=0%  Similarity=-0.197  Sum_probs=7.3

Q ss_pred             cchHHhHhhhccCcee
Q 010753          422 SRSIVLHEAYCSRHSV  437 (502)
Q Consensus       422 ~~~l~lHe~~C~rn~~  437 (502)
                      ..-+-.|.-+||.++|
T Consensus      1225 ~~eFe~~W~r~Ggk~~ 1240 (1259)
T KOG0163|consen 1225 EHEFEREWERNGGKAY 1240 (1259)
T ss_pred             hHHHHHHHHHhCcHHh
Confidence            3344445545554443

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=91.11  E-value=0.77  Score=50.84  Aligned_cols=35  Identities=34%  Similarity=0.553  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010753           18 ERKERARLKLEREKKAKEEAKKQREAIEAAQRSRR   52 (502)
Q Consensus        18 ~r~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~~~r   52 (502)
                      +|.++-|.+++++.+++.||+++|.+.+++.|+++
T Consensus       207 q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~  241 (591)
T KOG2412|consen  207 QRKEQIRERKERSEEKREEAERKRRAHQEELRQKE  241 (591)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            34444444444444444444433333333333333

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=90.87  E-value=0.11  Score=34.01  Aligned_cols=21  Identities=19%  Similarity=0.553  Sum_probs=16.2

Q ss_pred             cccccccCccccc-chHHhHhh
Q 010753          410 TVQCKNCKRFIPS-RSIVLHEA  430 (502)
Q Consensus       410 ~~~C~nC~k~~~~-~~l~lHe~  430 (502)
                      +++|..|++.|.. ..|..|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCCccCCccCChhHHHHHhH
Confidence            3678888888874 78888876

>PTZ00121 MAEBL; Provisional

Probab=90.84  E-value=1.2  Score=54.34  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010753           12 LEKEQKERKERARLKLEREKKA   33 (502)
Q Consensus        12 ~~~e~~~r~~~~~~~~~~e~~~   33 (502)
                      .+.||.++++.+|.|+|..+++
T Consensus      1607 ~kae~~kk~ee~~kk~E~~kk~ 1628 (2084)
T PTZ00121       1607 MKAEEAKKAEEAKIKAEELKKA 1628 (2084)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3666777766666555554444

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=90.29  E-value=0.12  Score=53.64  Aligned_cols=60  Identities=20%  Similarity=0.404  Sum_probs=40.3

Q ss_pred             cCceeeccccccCccccc-ccccCcccCccCCCcc-ChhhHHHhhhccc---ceeeec-CCcccccc
Q 010753          433 SRHSVACQHAGCGMVLRT-EEARDHVHCDKCGQGL-QRREMEKHMKVFH---EQCSCP-CGVVLENA  493 (502)
Q Consensus       433 ~rn~~~C~~~~Cgk~F~k-~~l~~H~hC~~Cgk~f-~~s~l~kH~~i~H---tp~~C~-Cg~~f~~~  493 (502)
                      .++||+||..||.|.+.. ..|+-|-.=.+|..-. ..-+=.+| .+|-   .||.|. |+|...+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~-~~F~~~~KPYrCevC~KRYKNl  411 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKM-NIFSAKDKPYRCEVCDKRYKNL  411 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCcccc-ccccccCCceeccccchhhccC
Confidence            369999999999999997 8888773333333222 22233444 3343   399999 99987764

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=89.62  E-value=0.73  Score=48.57  Aligned_cols=93  Identities=18%  Similarity=0.247  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHcCCc-EEEEEEeee
Q 010753            8 AREKLEKEQKERKERARLKLEREKK-AKEEAKKQREAIEA-AQRSRRLDAIDAQLKADQEMQESLLAGGG-IVFYHTLEA   84 (502)
Q Consensus         8 ~~~k~~~e~~~r~~~~~~~~~~e~~-~~~~a~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~   84 (502)
                      -.++...||++++.+.|...+++.. .+.+|.++...+.+ +.++.++-+++++.++-+...+.+...-. ..|...|.+
T Consensus       223 i~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea  302 (334)
T PRK11029        223 IYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRA  302 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3456667777776666666666643 23334333333222 33444444445554444444455443322 224444554


Q ss_pred             ccC--CCCCCeEEeChhH
Q 010753           85 LPF--QGSGDKIKLPPSC  100 (502)
Q Consensus        85 ~~~--~~~gDKIiLP~Sa  100 (502)
                      +-.  .+.+++++||++.
T Consensus       303 ~~~~~~~~~~~~vl~~~~  320 (334)
T PRK11029        303 YENSFSGNQDVMVLSPDS  320 (334)
T ss_pred             HHHHhcCCCcEEEECCCh
Confidence            432  3345679999984

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=88.44  E-value=3  Score=48.28  Aligned_cols=9  Identities=44%  Similarity=0.918  Sum_probs=4.1

Q ss_pred             HHcCCcEEE
Q 010753           70 LLAGGGIVF   78 (502)
Q Consensus        70 ~~~~~g~~~   78 (502)
                      +..|+|+.-
T Consensus       302 l~sg~~~~v  310 (1064)
T KOG1144|consen  302 LASGGGLPV  310 (1064)
T ss_pred             HhcCCCCCC
Confidence            345544443

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=88.11  E-value=5.9  Score=45.89  Aligned_cols=153  Identities=16%  Similarity=0.123  Sum_probs=110.1

Q ss_pred             CCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEeeee-eCCCceeccHHHHHhcCC
Q 010753           89 GSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFT-ADEGFVGLPPHVWRNLFP  167 (502)
Q Consensus        89 ~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVlEFs-A~EG~v~LP~wm~~~L~~  167 (502)
                      ...--|.||...+..|.....  .+|+.--...  +          + ..+.-+.|  -|+ ..|+.|.+-+-....|++
T Consensus        12 ~r~cfv~lP~ql~~ai~~~~~--~~av~~v~~~--~----------~-~~~s~~~g--~~s~~se~~ieIn~~~A~~l~L   74 (952)
T KOG0735|consen   12 LRSCFVNLPEQLLEAISEPVQ--NYAVQAVVSK--N----------P-IKKSWVFG--HGSGSSENVIEINRVYAHTLGL   74 (952)
T ss_pred             chhhhhccHHHHHHHHhcccc--CceeEEEEcC--C----------C-hhheeecc--cCCCCccceEEeehhhHhhccC
Confidence            345568899999999976432  2344322221  1          0 12344444  343 456778888889999998


Q ss_pred             CCCCCCceEEEEEE-ecCCcceEEEeeccCCCCCCCChHH-HHHHHhc-cCcccccCCEEEEEEC-CEEEEEEEEEEcCC
Q 010753          168 SDTPNNSFVEVRYV-RLPKGTYAKLQPEGIGFAELPNQKA-VLETSLR-QHATLSQDDVLTVNYG-ELAYKLKVLELKPS  243 (502)
Q Consensus       168 ~~~~~~~~V~v~~~-~LPkGt~vkLqP~~~~f~di~n~Ka-vLE~~LR-~~stLT~Gd~I~I~~~-~~~y~l~V~e~~P~  243 (502)
                      .   ++..|.+... ..++++-|.+.|.+++=|+|-+--| -||..|- ++--+|. ....|++. +..-.|.|+.+.|.
T Consensus        75 ~---e~~~V~l~~~~~v~~~~~V~VeP~TsdDWEIiElnA~~~e~~lL~Q~RIv~~-~~f~iwl~~~t~i~fqv~rl~Ps  150 (952)
T KOG0735|consen   75 A---ENQEVKLSIIDHVHEATQVEVEPVTSDDWEIIELNAEWLEENLLVQTRIVTP-EIFIIWLPSGTVIQFQVDRLIPS  150 (952)
T ss_pred             C---CCCeEEEEEcCCccceeEEEEeeccCccHHHHHhhHHHHhhhhhhheeeccc-ceeEEEEcCccEEEEEEeeeecc
Confidence            8   4667777655 8999999999999987667655444 5666664 6778888 78888887 56778999999999


Q ss_pred             CceEEEcCceEEeccCCCC
Q 010753          244 SSVSVLETDIEVDIVSPDD  262 (502)
Q Consensus       244 ~aVsIidTDleVD~~~~~~  262 (502)
                      -.+.=++++-+|=+.|-..
T Consensus       151 ~~~gRl~~~Tev~VaPK~~  169 (952)
T KOG0735|consen  151 MLYGRLLRGTEVLVAPKPN  169 (952)
T ss_pred             cceeeecCCceEEEecCcc
Confidence            9888899999998888644

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=87.37  E-value=3.2  Score=45.28  Aligned_cols=36  Identities=25%  Similarity=0.213  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010753           35 EEAKKQREAIEAAQRSRRLDAIDAQLKADQEMQESL   70 (502)
Q Consensus        35 ~~a~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~   70 (502)
                      +.++++||+..+..+++|-+++++.++++++..+..
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (429)
T PRK00247        349 EIAQKRRAAEREINREARQERAAAMARARARRAAVK  384 (429)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence            444556666666666667666666666655554443

>PRK04860 hypothetical protein; Provisional

Probab=87.23  E-value=0.38  Score=45.64  Aligned_cols=36  Identities=22%  Similarity=0.516  Sum_probs=31.2

Q ss_pred             cccccccCcccccchHHhHhh-hccCceeeccccccCccccc
Q 010753          410 TVQCKNCKRFIPSRSIVLHEA-YCSRHSVACQHAGCGMVLRT  450 (502)
Q Consensus       410 ~~~C~nC~k~~~~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k  450 (502)
                      .|.|. |++  -..++..|.+ +.++++|.|..  |++.|..
T Consensus       119 ~Y~C~-C~~--~~~~~rrH~ri~~g~~~YrC~~--C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE--HQLTVRRHNRVVRGEAVYRCRR--CGETLVF  155 (160)
T ss_pred             EEEcC-CCC--eeCHHHHHHHHhcCCccEECCC--CCceeEE
Confidence            69998 998  5688889987 77899999999  9999865

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.99  E-value=0.13  Score=32.42  Aligned_cols=18  Identities=22%  Similarity=0.647  Sum_probs=12.3

Q ss_pred             eeccccccCccccc-ccccCc
Q 010753          437 VACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       437 ~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      |+|+.  ||++|.. ..|.+|
T Consensus         1 y~C~~--C~~~f~~~~~l~~H   19 (23)
T PF00096_consen    1 YKCPI--CGKSFSSKSNLKRH   19 (23)
T ss_dssp             EEETT--TTEEESSHHHHHHH
T ss_pred             CCCCC--CCCccCCHHHHHHH
Confidence            56776  7777776 666655

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=86.73  E-value=3.5  Score=47.55  Aligned_cols=13  Identities=23%  Similarity=0.238  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHH
Q 010753           57 DAQLKADQEMQES   69 (502)
Q Consensus        57 ~~~~~~~~~~~~~   69 (502)
                      ++++++++|.+++
T Consensus       992 e~eee~k~q~~~E 1004 (1259)
T KOG0163|consen  992 EAEEEAKRQNQLE 1004 (1259)
T ss_pred             HHHHHHHHHhHHH
Confidence            3444445555433

>PRK04860 hypothetical protein; Provisional

Probab=86.21  E-value=0.41  Score=45.40  Aligned_cols=34  Identities=24%  Similarity=0.606  Sum_probs=27.3

Q ss_pred             ccCccCCCccChhhHHHhhhcccc--eeeec-CCcccccc
Q 010753          457 VHCDKCGQGLQRREMEKHMKVFHE--QCSCP-CGVVLENA  493 (502)
Q Consensus       457 ~hC~~Cgk~f~~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~  493 (502)
                      |.|. |++  -..++.+|++++.+  +|.|. |+..|...
T Consensus       120 Y~C~-C~~--~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        120 YRCK-CQE--HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEcC-CCC--eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            7897 875  57789999999533  89999 99988653

>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein

Probab=86.08  E-value=0.37  Score=53.16  Aligned_cols=44  Identities=32%  Similarity=0.523  Sum_probs=40.2

Q ss_pred             ccccCcccccccCcccccchHHhHhhhccCceeeccccccCccccc
Q 010753          405 SIEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRT  450 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k  450 (502)
                      ..+.+.|-|+||.-.+|+.....-.+.|.||.|.||.  |+-....
T Consensus        21 ~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~--C~~~L~~   64 (483)
T PF05502_consen   21 SEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPI--CFSPLSV   64 (483)
T ss_pred             ccccceeECccccccCChhhheeccceeccccccCCC--CCCccee
Confidence            4578899999999999999998999999999999999  9988876

p62 binds directly to the Arp1 subunit of dynactin [, ].

>PF09262 PEX-1N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015342 This domain adopts a double psi beta-barrel fold, similar in structure to the Cdc48 N-terminal domain

Probab=85.93  E-value=0.46  Score=40.12  Aligned_cols=74  Identities=26%  Similarity=0.267  Sum_probs=44.7

Q ss_pred             cceEEEeeccCCCCCC-CChHHHHHHHhc-cCcccccCCEEEEEE-CCEEEEEEEEEEcCCCc---eEEEcCceEEeccC
Q 010753          186 GTYAKLQPEGIGFAEL-PNQKAVLETSLR-QHATLSQDDVLTVNY-GELAYKLKVLELKPSSS---VSVLETDIEVDIVS  259 (502)
Q Consensus       186 Gt~vkLqP~~~~f~di-~n~KavLE~~LR-~~stLT~Gd~I~I~~-~~~~y~l~V~e~~P~~a---VsIidTDleVD~~~  259 (502)
                      ++.|-+.|++.+=|+| +..-..||..|- +--.++.|.++.|+. ++..-+|+|..+.|.+.   ...+..|-||=+.|
T Consensus         1 A~~V~veP~T~dDWEIlEl~A~~lE~~lL~QiRvv~~~~~~~v~v~~~~~i~~~V~~i~p~~~~~~~~~L~~~TEv~VaP   80 (80)
T PF09262_consen    1 AKSVEVEPLTSDDWEILELHAEFLEDQLLSQIRVVFPGQVFPVWVSQNTVIKFKVVSIEPSSSAEGCARLSPDTEVIVAP   80 (80)
T ss_dssp             -SEEEEEESSHHHHHHHHHS-SSHHHHHHHH--EE-TT-EEEEESSSS-EEEEEEEEEES--S---SEE--TT-EEEE--
T ss_pred             CcEEEEEcCCccHHHHHHHhHHHHHHHHHHhheeecCCCEEEEEEcCCeEEEEEEEEccCCCCceeEEEeCCCcEEEECC
Confidence            4567888887532222 122234777775 578999999999998 57889999999999876   78888888887654

It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; GO: 0005524 ATP binding, 0007031 peroxisome organization, 0005777 peroxisome; PDB: 1WLF_A.

>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences

Probab=85.51  E-value=3.1  Score=40.60  Aligned_cols=43  Identities=12%  Similarity=0.121  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHcCCcEEEEEE
Q 010753           39 KQREAIEAAQRSRRLDAIDAQLKADQEMQ---ESLLAGGGIVFYHT   81 (502)
Q Consensus        39 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~   81 (502)
                      +.+|+.++....-+-++.+++|+.+|+..   |.|..|.+..-+..
T Consensus        91 RmQEE~dakA~~~kEKq~q~EEEKRrqkie~we~~q~Gks~k~~~~  136 (190)
T PF06936_consen   91 RMQEELDAKAEEYKEKQKQEEEEKRRQKIEMWESMQEGKSYKGSKK  136 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            44455555444444444455555554444   44666666553333

SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=85.50  E-value=0.74  Score=36.78  Aligned_cols=29  Identities=28%  Similarity=0.633  Sum_probs=16.4

Q ss_pred             CcccccccCcccccchHHhHhhhccCceeeccccccCcc
Q 010753          409 DTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMV  447 (502)
Q Consensus       409 ~~~~C~nC~k~~~~~~l~lHe~~C~rn~~~C~~~~Cgk~  447 (502)
                      ....|.-||..+.-..-        -=.|.||.  ||+.
T Consensus         6 ~~~~CtSCg~~i~~~~~--------~~~F~CPn--CG~~   34 (59)
T PRK14890          6 EPPKCTSCGIEIAPREK--------AVKFLCPN--CGEV   34 (59)
T ss_pred             cCccccCCCCcccCCCc--------cCEeeCCC--CCCe
Confidence            34468888877642110        01267777  7766

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=85.35  E-value=0.75  Score=36.84  Aligned_cols=11  Identities=36%  Similarity=0.742  Sum_probs=7.9

Q ss_pred             cccccccCccc
Q 010753          410 TVQCKNCKRFI  420 (502)
Q Consensus       410 ~~~C~nC~k~~  420 (502)
                      .-.|.-||..+
T Consensus         9 ~~~CtSCg~~i   19 (61)
T COG2888           9 PPVCTSCGREI   19 (61)
T ss_pred             CceeccCCCEe
Confidence            45688888777

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=84.71  E-value=6.1  Score=46.76  Aligned_cols=46  Identities=30%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 010753            7 RAREKLEKEQKERKERARLKLEREKKAKEEA-KKQREAIEAAQRSRR   52 (502)
Q Consensus         7 ~~~~k~~~e~~~r~~~~~~~~~~e~~~~~~a-~~~~~~~~~~~~~~r   52 (502)
                      +|..+..+.|++-.+.-+.|+++++.+..++ ++++++.+++++.||
T Consensus       821 ~a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r  867 (1018)
T KOG2002|consen  821 QALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARR  867 (1018)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444433333355666665554444 233333444444444

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=83.72  E-value=5.6  Score=44.32  Aligned_cols=42  Identities=36%  Similarity=0.547  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHH
Q 010753           14 KEQKERKERARLKLEREKKAKEEAKKQREAIEAAQR-SRRLDA   55 (502)
Q Consensus        14 ~e~~~r~~~~~~~~~~e~~~~~~a~~~~~~~~~~~~-~~r~~~   55 (502)
                      ++++++.++.|.-.|+-|++.+|+.+|.+..++..+ +.++.+
T Consensus       213 ~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~  255 (591)
T KOG2412|consen  213 RERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRA  255 (591)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            344444444444444444444455444444444333 434333

>KOG3054 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.50  E-value=6.2  Score=40.07  Aligned_cols=64  Identities=28%  Similarity=0.380  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHH-HHHHHHHhhHHHHH--HHHHHHHHHHHHHHc
Q 010753            9 REKLEKEQKERKERARLKLEREKKAK----EEA-KKQREA-IEAAQRSRRLDAID--AQLKADQEMQESLLA   72 (502)
Q Consensus         9 ~~k~~~e~~~r~~~~~~~~~~e~~~~----~~a-~~~~~~-~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~   72 (502)
                      +.||+..|.+|++|.---.+||.+++    ++| +|+.|+ +.++..+++-++.+  .++++++.++|-+..
T Consensus       108 ~aKleakqerr~qRe~E~~eREeRk~ke~~eE~erKkdEeR~~eEae~k~ee~~RkakEE~arkeheEylkm  179 (299)
T KOG3054|consen  108 EAKLEAKQERRAQREAEEAEREERKRKEDYEEAERKKDEERLAEEAELKEEEKERKAKEEEARKEHEEYLKM  179 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566566666665555555554332    233 233333 34444444333333  233344444554443

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.23  E-value=0.47  Score=53.97  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=11.7

Q ss_pred             cCccCCCccC-hhhHHHhhhccc
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      +|..|.+-|- ...|.+|++..|
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h  206 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDH  206 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccce
Confidence            4555554444 555555555444

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=83.05  E-value=8.2  Score=43.35  Aligned_cols=20  Identities=20%  Similarity=0.164  Sum_probs=12.1

Q ss_pred             CCCCCCCChHHHHHHHhccC
Q 010753          196 IGFAELPNQKAVLETSLRQH  215 (502)
Q Consensus       196 ~~f~di~n~KavLE~~LR~~  215 (502)
                      .+||--.--++||+++-..|
T Consensus       728 DaYwpe~kr~a~~drY~sdf  747 (940)
T KOG4661|consen  728 DAYWPESKRKAVLDRYSSDF  747 (940)
T ss_pred             cccCchhhhhhHhhhhhccc
Confidence            45666666677777654444

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=82.98  E-value=0.51  Score=30.24  Aligned_cols=21  Identities=19%  Similarity=0.700  Sum_probs=18.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      |.|+.|++.|. ...+..|++-
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            67899999998 8899999875

>PRK04023 DNA polymerase II large subunit; Validated

Probab=82.92  E-value=0.9  Score=53.68  Aligned_cols=54  Identities=22%  Similarity=0.631  Sum_probs=34.7

Q ss_pred             ccccCcccccccCcccccchHHhHhhhccCceeeccccccCcccccccccCcccCccCCCccChhhHHHhhhcccceeee
Q 010753          405 SIEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHEQCSC  484 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~~s~l~kH~~i~Htp~~C  484 (502)
                      +++.....|+.||+..              .-+.||.  ||..     -...|.|+.||....             ++.|
T Consensus       621 eVEVg~RfCpsCG~~t--------------~~frCP~--CG~~-----Te~i~fCP~CG~~~~-------------~y~C  666 (1121)
T PRK04023        621 EVEIGRRKCPSCGKET--------------FYRRCPF--CGTH-----TEPVYRCPRCGIEVE-------------EDEC  666 (1121)
T ss_pred             eecccCccCCCCCCcC--------------CcccCCC--CCCC-----CCcceeCccccCcCC-------------CCcC
Confidence            4566788999999973              2257887  8865     234467888853221             4668


Q ss_pred             c-CCccccc
Q 010753          485 P-CGVVLEN  492 (502)
Q Consensus       485 ~-Cg~~f~~  492 (502)
                      + ||....-
T Consensus       667 PKCG~El~~  675 (1121)
T PRK04023        667 EKCGREPTP  675 (1121)
T ss_pred             CCCCCCCCc
Confidence            7 8765443

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=82.10  E-value=0.61  Score=41.52  Aligned_cols=15  Identities=20%  Similarity=0.786  Sum_probs=8.6

Q ss_pred             CceeeccccccCccccc
Q 010753          434 RHSVACQHAGCGMVLRT  450 (502)
Q Consensus       434 rn~~~C~~~~Cgk~F~k  450 (502)
                      ++|++||.  ||..|.-
T Consensus        24 k~PivCP~--CG~~~~~   38 (108)
T PF09538_consen   24 KDPIVCPK--CGTEFPP   38 (108)
T ss_pred             CCCccCCC--CCCccCc
Confidence            45566665  6665543

The function of members of this family is unknown.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=81.95  E-value=0.89  Score=33.96  Aligned_cols=29  Identities=28%  Similarity=0.674  Sum_probs=17.7

Q ss_pred             eeeccccccCcccccccccCcccCccCCCcc
Q 010753          436 SVACQHAGCGMVLRTEEARDHVHCDKCGQGL  466 (502)
Q Consensus       436 ~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f  466 (502)
                      .|+|+.  ||..|.-.....-++|+.||..+
T Consensus         3 ~y~C~~--CG~~~~~~~~~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCAR--CGREVELDEYGTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCC--CCCEEEECCCCCceECCCCCCeE
Confidence            467776  77777653333356777777443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.22  E-value=0.83  Score=45.08  Aligned_cols=11  Identities=27%  Similarity=0.604  Sum_probs=8.2

Q ss_pred             ccCccCCCccC
Q 010753          457 VHCDKCGQGLQ  467 (502)
Q Consensus       457 ~hC~~Cgk~f~  467 (502)
                      |.||+||-+|.
T Consensus        49 ~vCP~CgyA~~   59 (214)
T PF09986_consen   49 WVCPHCGYAAF   59 (214)
T ss_pred             EECCCCCCccc
Confidence            67889986654

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=81.10  E-value=1  Score=32.07  Aligned_cols=9  Identities=56%  Similarity=1.287  Sum_probs=4.1

Q ss_pred             ccCccCCCc
Q 010753          457 VHCDKCGQG  465 (502)
Q Consensus       457 ~hC~~Cgk~  465 (502)
                      ..|+.||..
T Consensus        26 v~C~~C~~~   34 (38)
T TIGR02098        26 VRCGKCGHV   34 (38)
T ss_pred             EECCCCCCE
Confidence            345555433

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>TIGR01932 hflC HflC protein

Probab=80.80  E-value=3.2  Score=43.21  Aligned_cols=22  Identities=14%  Similarity=0.200  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010753            9 REKLEKEQKERKERARLKLERE   30 (502)
Q Consensus         9 ~~k~~~e~~~r~~~~~~~~~~e   30 (502)
                      .+|...||++++.+.|...+++
T Consensus       214 ~~~~~aere~~a~~~r~ege~~  235 (317)
T TIGR01932       214 YNRMRSEREQIARMHRSQGEEK  235 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666655555444433

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=80.65  E-value=1.1  Score=33.02  Aligned_cols=25  Identities=36%  Similarity=0.918  Sum_probs=17.0

Q ss_pred             eeccccccCccccc----ccccCcccCccCCC
Q 010753          437 VACQHAGCGMVLRT----EEARDHVHCDKCGQ  464 (502)
Q Consensus       437 ~~C~~~~Cgk~F~k----~~l~~H~hC~~Cgk  464 (502)
                      |.|+.  ||..|-.    ++ .....|+.||.
T Consensus         6 y~C~~--Cg~~fe~~~~~~~-~~~~~CP~Cg~   34 (42)
T PF09723_consen    6 YRCEE--CGHEFEVLQSISE-DDPVPCPECGS   34 (42)
T ss_pred             EEeCC--CCCEEEEEEEcCC-CCCCcCCCCCC
Confidence            77887  8877765    33 34477888874

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF14353 CpXC: CpXC protein

Probab=80.35  E-value=0.4  Score=43.08  Aligned_cols=11  Identities=18%  Similarity=0.691  Sum_probs=6.5

Q ss_pred             ccccccCcccc
Q 010753          411 VQCKNCKRFIP  421 (502)
Q Consensus       411 ~~C~nC~k~~~  421 (502)
                      ..|++|++.|.
T Consensus         2 itCP~C~~~~~   12 (128)
T PF14353_consen    2 ITCPHCGHEFE   12 (128)
T ss_pred             cCCCCCCCeeE
Confidence            35666666663

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=80.03  E-value=0.66  Score=38.49  Aligned_cols=56  Identities=14%  Similarity=0.383  Sum_probs=12.4

Q ss_pred             eccccccCccccc-ccccCcc------cCccCCCccC-hhhHHHhhhcc-cceeeec-CCccccccccc
Q 010753          438 ACQHAGCGMVLRT-EEARDHV------HCDKCGQGLQ-RREMEKHMKVF-HEQCSCP-CGVVLENAAMV  496 (502)
Q Consensus       438 ~C~~~~Cgk~F~k-~~l~~H~------hC~~Cgk~f~-~s~l~kH~~i~-Htp~~C~-Cg~~f~~~~~~  496 (502)
                      .|..  |+..|.. ..+..|.      ..+.. ..+. ...+..+.+.- +.++.|. |++.|.....+
T Consensus         1 ~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l   66 (100)
T PF12756_consen    1 QCLF--CDESFSSVDDLLQHMKKKHGFDIPDQ-KYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREAL   66 (100)
T ss_dssp             ---------------------------------------------------SSEEBSSSS-EESSHHHH
T ss_pred             Cccc--cccccccccccccccccccccccccc-cccccccccccccccccCCCCCCCccCCCCcCHHHH
Confidence            3777  9999988 7777772      22222 1222 34444443321 2369999 99999876544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	502
2yuj_A	190	Solution Structure Of Human Ubiquitin Fusion Degrad		6e-26
1zc1_A	208	Ufd1 Exhibits The Aaa-Atpase Fold With Two Distinct		2e-22

>pdb|2YUJ|A Chain A, Solution Structure Of Human Ubiquitin Fusion Degradation Protein 1 Homolog Ufd1 Length = 190

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 18/167 (10%)
Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G KI +PPS   +LS        P+ FKL+              K S+R TH GVLEF A
Sbjct: 40  GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVA 84
Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
           DEG   LP  + +NL   +      V+V  V L   TY+K QP+   F ++ N KAVLE 
Sbjct: 85  DEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLEN 141
Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDI 257
           +LR  A L+  DV+ +NY E  Y+L+V+E KP  +VS++E D+ VD 
Sbjct: 142 ALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDF 188

>pdb|1ZC1|A Chain A, Ufd1 Exhibits The Aaa-Atpase Fold With Two Distinct Ubiquitin Interaction Sites Length = 208

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 21/173 (12%)
Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G KI LPPS  ++LS      + P+ FKL+               E+ R TH GVLEF A
Sbjct: 45  GGKIFLPPSALSKLSMLNI--RYPMLFKLTA-------------NETGRVTHGGVLEFIA 89
Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
           +EG V LP  +   L        S +++    +P G + KL+P+ + F ++ + KAVLE 
Sbjct: 90  EEGRVYLPQWMMETL---GIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLEN 146
Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKP---SSSVSVLETDIEVDIVSP 260
            LR  +TL+ DDV+ ++Y    +K+K+LE+KP   S S+ V+ETD+  D   P
Sbjct: 147 VLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPP 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	502
2yuj_A	190	Ubiquitin fusion degradation 1-like; ubiquitin-dep	9e-51
1zc1_A	208	Ubiquitin fusion degradation protein 1; UFD1, doub	1e-48
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	1e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	8e-04
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	3e-04
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	4e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	8e-04

>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 190

 Score =  170 bits (433), Expect = 9e-51
 Identities = 67/167 (40%), Positives = 90/167 (53%), Gaps = 18/167 (10%)

Query: 91  GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
           G KI +PPS   +LS        P+ FKL+              K S+R TH GVLEF A
Sbjct: 40  GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVA 84

Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
           DEG   LP  + +NL          V+V  V L   TY+K QP+   F ++ N KAVLE 
Sbjct: 85  DEGICYLPHWMMQNLL---LEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLEN 141

Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDI 257
           +LR  A L+  DV+ +NY E  Y+L+V+E KP  +VS++E D+ VD 
Sbjct: 142 ALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDF 188

>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae} Length = 208

 Score =  165 bits (419), Expect = 1e-48
 Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 21/190 (11%)

Query: 76  IVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEK 135
           I   +          G KI LPPS  ++LS      + P+ FKL+               
Sbjct: 30  IAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNI--RYPMLFKLT-------------AN 74

Query: 136 ESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEG 195
           E+ R TH GVLEF A+EG V LP  +   L        S +++    +P G + KL+P+ 
Sbjct: 75  ETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQ---PGSLLQISSTDVPLGQFVKLEPQS 131

Query: 196 IGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSS---SVSVLETD 252
           + F ++ + KAVLE  LR  +TL+ DDV+ ++Y    +K+K+LE+KP S   S+ V+ETD
Sbjct: 132 VDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETD 191

Query: 253 IEVDIVSPDD 262
           +  D   P  
Sbjct: 192 LVTDFAPPVG 201

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 4   ELRRAREKLEKEQKERKERA-RLKLEREKKAKEEAKKQREAIEAAQRS------RRLDAI 56
           +  R  ++ E  +K R+E+  RL    ++        ++E  E A++       R+ + +
Sbjct: 76  QADRLTQEPESIRKWREEQRKRL----QELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131

Query: 57  DAQLKADQEMQESLLA 72
           +     ++   ++   
Sbjct: 132 EKNKINNRIADKAFYQ 147

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 52/411 (12%), Positives = 118/411 (28%), Gaps = 117/411 (28%)

Query: 160 HVWRNLFPSDTPNNSFV---EVRYVR-LPKGTYAKLQPEGIGFAELPNQKA----VLETS 211
           + ++++         FV   + + V+ +PK   +K + + I      +  +    +  T 
Sbjct: 16  YQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTL 71

Query: 212 LRQHATLSQ---DDVLTVNYGELAYKLKVLELKPS-------SSVSVLETDIEVDIVSPD 261
           L +   + Q   ++VL +NY  L   +K  + +PS            L  D    + +  
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND--NQVFAKY 129

Query: 262 DMSAGTDQYTLKPLLFG-KSES-----GMVEEGKYVFYKFTIDDDTRKK--------IVS 307
           ++S       L+  L   +        G++  GK             +         +  
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 308 GEKRAE-----------VRVDSEIDGGDTSIYVSRHPL---------LFPTRHLHE---- 343
               +             ++D             +  +         L  ++        
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 344 ----WSSH-----DAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRK 394
                ++      +   K+++  ++ K V   T  +       ++     +TL  D    
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLT-TRFKQV---TDFLSAATTTHISLDHHSMTLTPD---- 301

Query: 395 VGQEATSSSSSIEMDTV--QCKNCKRF-IPSRSIVLHEAYCSRHSVACQHAGCGMVLRTE 451
                       E+ ++  +  +C+   +P       E   + +      +     +R  
Sbjct: 302 ------------EVKSLLLKYLDCRPQDLP------REV-LTTNPRRL--SIIAESIRDG 340

Query: 452 EAR----DHVHCDK-------CGQGLQRREMEKHMK---VFHEQCSCPCGV 488
            A      HV+CDK           L+  E  K      VF      P  +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 20/75 (26%)

Query: 411 VQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRRE 470
             C++C   +    +  HE YC                RTE       C  CG+ +  ++
Sbjct: 18  AVCQHCDLELSILKLKEHEDYCGA--------------RTEL------CGNCGRNVLVKD 57

Query: 471 MEKHMKVFHEQCSCP 485
           ++ H +V   + S P
Sbjct: 58  LKTHPEVCGREGSGP 72

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 19/87 (21%)

Query: 411 VQCKN--CKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDH---------VHC 459
           V+C N  C   +  R +  H+A+C    + C    C    +      H         V C
Sbjct: 83  VKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSC 140

Query: 460 DKCGQGLQRREMEKHMKVFHEQCSCPC 486
           D C   +   + E H        +CP 
Sbjct: 141 DNCAASMAFEDKEIH------DQNCPL 161

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 14/94 (14%)

Query: 412 QCKNCKRFIPSRSIV---LHEAYCSRHSVACQHAGCGMVLRTEEARDH--------VHCD 460
           +C      +    +      +       V C + GC   +      DH        + C 
Sbjct: 55  KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP 114

Query: 461 KCGQGLQRREMEKHMKV--FHEQCSCP-CGVVLE 491
           +C +  Q+  +  H+       Q SC  C   + 
Sbjct: 115 QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMA 148

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Length = 76

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 19/74 (25%)

Query: 428 HEAYCSRHSVACQHAGCGMVLRTEEARDH---------VHCDKCGQGLQRREMEKHMKVF 478
           H   CS + + C +  C M L   +   H         + C+ CG        E H    
Sbjct: 8   HLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESH---- 62

Query: 479 HEQC-----SCPCG 487
              C         G
Sbjct: 63  EGMCPQESSGPSSG 76

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 66

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 23/80 (28%)

Query: 410 TVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRR 469
           T  C  C +     +I  H+  C R  VAC +  CG+                   + R 
Sbjct: 10  TQPCTYCTKEFVFDTIQSHQYQCPRLPVACPN-QCGV-----------------GTVARE 51

Query: 470 EMEKHMKVFHEQCSCPCGVV 489
           ++  H+K      SC   +V
Sbjct: 52  DLPGHLKD-----SCNTALV 66

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 14/69 (20%), Positives = 31/69 (44%)

Query: 1   MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
            +   +   ++LE+E + R ER ++  + E +   +   + EA+  A  S      +A+ 
Sbjct: 669 QEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAES 728

Query: 61  KADQEMQES 69
           +A+    E 
Sbjct: 729 RAEAARIEG 737

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	502
1zc1_A	208	Ubiquitin fusion degradation protein 1; UFD1, doub	100.0
2yuj_A	190	Ubiquitin fusion degradation 1-like; ubiquitin-dep	100.0
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.47
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.46
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.38
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.34
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.3
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.27
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.18
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.15
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.1
1cz4_A	185	VCP-like ATPase; double-PSI beta-barrel, beta-CLAM	99.09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.08
3qwz_A	211	Transitional endoplasmic reticulum ATPase; UBX, P9	99.08
3tiw_A	187	Transitional endoplasmic reticulum ATPase; beta-ba	99.08
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.02
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.0
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	98.99
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.99
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.98
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	98.96
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.95
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	98.93
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.93
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	98.91
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.91
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	98.91
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	98.88
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	98.87
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.86
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	98.84
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.82
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.82
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.82
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.81
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	98.8
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.78
1wlf_A	179	PEX1, peroxisome biogenesis factor 1; N-terminal d	98.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.75
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.66
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.65
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	98.59
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.53
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.51
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.5
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.47
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.46
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.45
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.43
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.42
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.41
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.41
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.4
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.36
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.34
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.33
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.33
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.32
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.31
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.29
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.26
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.26
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.23
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.22
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.15
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.15
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.14
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.12
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.07
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.06
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.03
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.02
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.0
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.0
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	97.99
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	97.93
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.91
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	97.87
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	97.85
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	97.82
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	97.81
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.75
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	97.75
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.75
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.74
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.74
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.74
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.73
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.73
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.72
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.72
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	97.72
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	97.71
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.71
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.71
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.7
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.7
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.7
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.7
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.69
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.69
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.69
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.69
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.68
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.68
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.68
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.68
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.67
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.67
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.67
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	97.67
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.67
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.66
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.66
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.66
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.66
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.66
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.65
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.65
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.65
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	97.64
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.64
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.63
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.62
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	97.61
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.61
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.6
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.59
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	97.59
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.59
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	97.57
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	97.57
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.55
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.52
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	97.51
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	97.49
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.48
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.47
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.44
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	97.44
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.43
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	97.42
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.37
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	97.36
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.36
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.35
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.34
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.34
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.34
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	97.33
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.32
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.32
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.32
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.31
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.31
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	97.31
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.31
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.31
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.31
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	97.3
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.3
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	97.3
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.3
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.3
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.3
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	97.29
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.29
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.29
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.29
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	97.29
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.29
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	97.29
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.29
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.29
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	97.29
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.28
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.28
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.27
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.27
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.27
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.27
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.27
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.27
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.27
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.27
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.26
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.26
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.26
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.26
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.26
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.25
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.25
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.24
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.24
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.24
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.24
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.24
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.24
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.23
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.23
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.23
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.22
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.22
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	97.22
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.22
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.22
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	97.22
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.22
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.22
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.22
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.22
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.22
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.21
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.2
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.2
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.2
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.2
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.2
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.2
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.19
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	97.19
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.19
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.19
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.19
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.18
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.18
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.18
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	97.12
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	97.1
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	97.09
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.07
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	97.06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	97.06
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	97.06
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.05
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	97.04
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.03
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.02
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.02
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.01
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.01
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	97.0
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.99
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.99
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.99
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.98
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.98
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.97
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.97
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.96
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.96
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.95
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.95
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.94
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.94
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.94
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	96.94
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.94
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.94
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.94
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	96.93
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.93
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	96.92
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.92
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.92
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.9
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	96.89
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	96.88
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	96.88
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	96.88
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.87
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	96.87
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.87
2jv2_A	83	Putative uncharacterized protein PH1500; AAA ATPas	96.86
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	96.85
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.84
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.84
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.83
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	96.83
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.81
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.8
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	96.8
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.8
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	96.8
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.79
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	96.79
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	96.73
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	96.72
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.65
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	96.65
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.65
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	96.63
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	96.63
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.54
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.53
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	96.45
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	96.43
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	96.41
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	96.36
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	96.33
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	96.33
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	96.32
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	96.29
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	96.26
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	96.26
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	96.19
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	96.18
1ard_A	29	Yeast transcription factor ADR1; transcription reg	96.17
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	96.14
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	96.1
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	96.09
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	96.08
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	95.02
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.02
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	96.0
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	95.97
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	94.91
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	95.82
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	94.79
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.79
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	95.79
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	95.77
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	95.72
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.67
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.62
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	95.58
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.57
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.55
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.54
1paa_A	30	Yeast transcription factor ADR1; transcription reg	95.52
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.5
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	95.48
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	95.43
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	95.38
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.36
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	95.17
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	95.17
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.07
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.05
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	94.94
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.9
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.9
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	94.79
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	94.77
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	94.68
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.62
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	94.52
1ard_A	29	Yeast transcription factor ADR1; transcription reg	94.47
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.42
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	94.18
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.18
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	94.12
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	93.07
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	93.82
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	93.77
1paa_A	30	Yeast transcription factor ADR1; transcription reg	93.67
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	93.61
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	93.53
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.44
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	93.38
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	92.46
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	93.31
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	93.28
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	93.23
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.22
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.17
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.1
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	93.03
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	92.95
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	92.9
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.8
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	92.6
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	91.98
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	90.97
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	90.83
3jqw_A	121	COLH protein, collagenase; beta-barrel, dual calci	90.69
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	90.34
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	90.2
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	89.66
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	88.39
1nqj_A	119	Class 1 collagenase; beta sandwich, metalloproteas	88.29
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	85.04
1cr5_A	189	SEC18P (residues 22 - 210); double-PSI beta barrel	82.98
3tiw_A	187	Transitional endoplasmic reticulum ATPase; beta-ba	80.78
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	80.63

>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-59  Score=449.03  Aligned_cols=173  Identities=37%  Similarity=0.614  Sum_probs=163.8

Q ss_pred             EEEEEEeeeccC-----------CCCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEE
Q 010753           76 IVFYHTLEALPF-----------QGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSG  144 (502)
Q Consensus        76 ~~~~~~~~~~~~-----------~~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~G  144 (502)
                      -.|...|+++|.           .+.||||+||||||++|++.++  +|||+|+|+|..             ++++||||
T Consensus        19 ~~f~~~~rc~~~~~~p~~~~r~~~~~GdKIiLP~SaL~~L~~~~i--~~Pm~F~l~n~~-------------~~~~th~G   83 (208)
T 1zc1_A           19 QTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNI--RYPMLFKLTANE-------------TGRVTHGG   83 (208)
T ss_dssp             EEEEEEEEEEEGGGSCTTTSCHHHHHSSEEEECHHHHHHHHHTTC--CSSCCEEEECTT-------------TCCEEEEE
T ss_pred             ccccceEEEEEEEeccCcccccccCCCCeEECCHHHHHHHHHCCC--CcCEEEEEEeCC-------------CCCEEEEE
Confidence            679999999872           2689999999999999999887  899999999953             57899999


Q ss_pred             EeeeeeCCCceeccHHHHHhcCCCCCCCCceEEEEEEecCCcceEEEeeccCCCCCCCChHHHHHHHhccCcccccCCEE
Q 010753          145 VLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVL  224 (502)
Q Consensus       145 VlEFsA~EG~v~LP~wm~~~L~~~~~~~~~~V~v~~~~LPkGt~vkLqP~~~~f~di~n~KavLE~~LR~~stLT~Gd~I  224 (502)
                      ||||+|+||+|+||+|||++|++.   +++.|+|++++|||||||||||++.+|+||+|||||||++||||+|||+||+|
T Consensus        84 VlEF~A~EG~v~lP~wmm~~L~l~---~gd~V~i~~~~LPkgt~vklqP~~~~Fldi~npKavLE~~LRnfstLT~Gd~I  160 (208)
T 1zc1_A           84 VLEFIAEEGRVYLPQWMMETLGIQ---PGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVI  160 (208)
T ss_dssp             EEEECCSSCEEEECHHHHHHHTCC---TTCEEEEEEEECCCCSEEEEECCHHHHHTSSCHHHHHHHHHHHCSCEESSSEE
T ss_pred             EEEEEcCCCeEEcCHHHHHhcCCC---CCCEEEEEEeEcCCCCEEEEeECccccccccCHHHHHHHHhhcCccccCCCEE
Confidence            999999999999999999999998   68899999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCEEEEEEEEEEcCCC---ceEEEcCceEEeccCCCCCCCc
Q 010753          225 TVNYGELAYKLKVLELKPSS---SVSVLETDIEVDIVSPDDMSAG  266 (502)
Q Consensus       225 ~I~~~~~~y~l~V~e~~P~~---aVsIidTDleVD~~~~~~~~~~  266 (502)
                      .|+|+++.|+|+|++++|++   |||||||||+|||+||.+|.+.
T Consensus       161 ~i~~~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf~~p~~y~ep  205 (208)
T 1zc1_A          161 EISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVGYVEP  205 (208)
T ss_dssp             EEEETTEEEEEEEEEEECSSTTCEECCSSSCSEEEECCCCCCCCC
T ss_pred             EEEeCCEEEEEEEEEEcCCCCCceEEEEeCceEEEecCCCCCcCC
Confidence            99999999999999999997   9999999999999999999854

>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=1.9e-58  Score=437.60  Aligned_cols=164  Identities=41%  Similarity=0.660  Sum_probs=155.7

Q ss_pred             EEEEeeeccC-----------CCCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEe
Q 010753           78 FYHTLEALPF-----------QGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVL  146 (502)
Q Consensus        78 ~~~~~~~~~~-----------~~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVl  146 (502)
                      |...|+++|.           .+.||||+||||||++|+++++  +|||+|+|+|..             ++++||||||
T Consensus        16 f~~~~~cy~~s~~~~~~~r~~~~~GdKI~LP~SaL~~L~~~~i--~~Pm~F~l~n~~-------------~~r~th~GVl   80 (190)
T 2yuj_A           16 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI--TYPMLFKLTNKN-------------SDRMTHCGVL   80 (190)
T ss_dssp             CEEEEEEECSTTSSSSSCCSTTTTTTEEECCHHHHHHHHHTTC--CSSCEEEEEETT-------------TTEEEEEEEE
T ss_pred             ccceEEEEehhHcCCcccccccCCCCeEECcHHHHHHHHHCCC--CcCeEEEEecCC-------------CCceEEEEEE
Confidence            7788888772           3599999999999999999988  899999999953             5789999999


Q ss_pred             eeeeCCCceeccHHHHHhcCCCCCCCCceEEEEEEecCCcceEEEeeccCCCCCCCChHHHHHHHhccCcccccCCEEEE
Q 010753          147 EFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTV  226 (502)
Q Consensus       147 EFsA~EG~v~LP~wm~~~L~~~~~~~~~~V~v~~~~LPkGt~vkLqP~~~~f~di~n~KavLE~~LR~~stLT~Gd~I~I  226 (502)
                      ||+|+||+|+||+|||++|++.   +++.|+|++++|||||||||||++.+|++|+|||||||++||||+|||+||+|.|
T Consensus        81 EFsA~EG~i~lP~wmm~~L~l~---~gd~V~v~~~~LPkgt~vklqP~~~~Fl~i~npKavLE~~LrnfstLT~Gd~I~I  157 (190)
T 2yuj_A           81 EFVADEGICYLPHWMMQNLLLE---EGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAI  157 (190)
T ss_dssp             ECCCBTTBEECCSHHHHHHTCC---TTEEEEEEEECCCCCSEEEEEESSHHHHHSSCHHHHHHHHHTTCCEECTTCEEEE
T ss_pred             EEecCCCeEEeCHHHHHhcCCC---CCCEEEEEEeecCCCcEEEEEECCccccccccHHHHHHHHHhcCcccccCCEEEE
Confidence            9999999999999999999998   6899999999999999999999999999999999999999999999999999999


Q ss_pred             EECCEEEEEEEEEEcCCCceEEEcCceEEeccC
Q 010753          227 NYGELAYKLKVLELKPSSSVSVLETDIEVDIVS  259 (502)
Q Consensus       227 ~~~~~~y~l~V~e~~P~~aVsIidTDleVD~~~  259 (502)
                      +|+++.|+|+|++++|++|||||||||+|||+|
T Consensus       158 ~~~~~~y~l~V~e~kP~~aV~IidTDl~vDf~p  190 (190)
T 2yuj_A          158 NYNEKIYELRVMETKPDKAVSIIECDMNVDFDA  190 (190)
T ss_dssp             ESSSCEEEEEEEEESSSSSEECSSCCCEEEECC
T ss_pred             EeCCEEEEEEEEEEcCCCeEEEEeCCEEEEecC
Confidence            999999999999999999999999999999986

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.47  E-value=1.2e-14  Score=123.74  Aligned_cols=88  Identities=19%  Similarity=0.461  Sum_probs=77.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc------------ccCccCCCccC-hhh
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH------------VHCDKCGQGLQ-RRE  470 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H------------~hC~~Cgk~f~-~s~  470 (502)
                      ....+.|..|++.|. ...|..|.+ |.++++|.|+.  |++.|.. ..|..|            |.|+.|++.|. ...
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~   81 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME   81 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT--TCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC--CCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHH
Confidence            457799999999998 589999997 88999999999  9999998 666555            67999999999 999


Q ss_pred             HHHhhhcccc--eeeec-CCccccccccc
Q 010753          471 MEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       471 l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |..|+++|+.  ||.|+ |++.|.+...+
T Consensus        82 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  110 (124)
T 2dlq_A           82 LRLHMVSHTGEMPYKCSSCSQQFMQKKDL  110 (124)
T ss_dssp             HHHHHHHHSSSCSEECSSSCCEESSHHHH
T ss_pred             HHHHHHHcCCCCCccCCCccchhCCHHHH
Confidence            9999999665  99999 99999987654

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.46  E-value=1.3e-14  Score=129.49  Aligned_cols=85  Identities=22%  Similarity=0.327  Sum_probs=76.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHH
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEK  473 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~k  473 (502)
                      ++.+|.|..|++.|. ..+|..|++ |.++++|.|+.  ||++|.. +.|..|         |.|+.||++|. .+.|..
T Consensus        19 Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~   96 (133)
T 2lt7_A           19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSS   96 (133)
T ss_dssp             TEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSS--SSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHH
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCc--cCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHH
Confidence            467899999999998 599999998 88999999999  9999998 888777         77999999999 999999


Q ss_pred             hhhcccc--------eeeec-CCcccccc
Q 010753          474 HMKVFHE--------QCSCP-CGVVLENA  493 (502)
Q Consensus       474 H~~i~Ht--------p~~C~-Cg~~f~~~  493 (502)
                      |++++|+        +|.|. |++.|...
T Consensus        97 H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           97 HIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             HhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            9999884        69999 99988754

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.38  E-value=1.2e-13  Score=116.83  Aligned_cols=88  Identities=16%  Similarity=0.470  Sum_probs=77.7

Q ss_pred             ccCcccccc--cCcccc-cchHHhHhh-hccCceeecc--ccccCccccc-ccccCc---------ccCccCCCccC-hh
Q 010753          407 EMDTVQCKN--CKRFIP-SRSIVLHEA-YCSRHSVACQ--HAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RR  469 (502)
Q Consensus       407 ~~~~~~C~n--C~k~~~-~~~l~lHe~-~C~rn~~~C~--~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s  469 (502)
                      +.+++.|..  |++.|. ...|..|.+ |.++++|.|+  .  ||+.|.. ..|..|         |.|+.||+.|. .+
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   80 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD--CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSD   80 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTT--CCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCC--CcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHH
Confidence            457899996  999998 599999997 7899999999  6  9999998 888777         78999999999 99


Q ss_pred             hHHHhhhcccc--eeee--c-CCccccccccc
Q 010753          470 EMEKHMKVFHE--QCSC--P-CGVVLENAAMV  496 (502)
Q Consensus       470 ~l~kH~~i~Ht--p~~C--~-Cg~~f~~~~~~  496 (502)
                      .|..|+++|+.  ||.|  + |++.|...+.+
T Consensus        81 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L  112 (119)
T 2jp9_A           81 HLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL  112 (119)
T ss_dssp             HHHHHHHHHHTCCCEECCSTTCCCEESSHHHH
T ss_pred             HHHHHHHHhcCCCCeeCCCCCCccccCCHHHH
Confidence            99999999664  8999  8 99999987543

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.34  E-value=2.2e-13  Score=125.29  Aligned_cols=87  Identities=20%  Similarity=0.574  Sum_probs=64.1

Q ss_pred             cCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHh
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKH  474 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH  474 (502)
                      ..++.|..|++.|. ...|..|.+ |.++++|.|+.  ||+.|.. ..|..|         |.|+.||+.|. .+.|..|
T Consensus        75 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  152 (190)
T 2i13_A           75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH  152 (190)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTT--TCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH
T ss_pred             CCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCC--CCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHH
Confidence            45677888888776 477777776 66777788877  8888877 666666         56888888887 7778888


Q ss_pred             hhcccc--eeeec-CCccccccccc
Q 010753          475 MKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       475 ~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      +++|+.  ||.|+ |++.|.....+
T Consensus       153 ~~~H~~~~~~~C~~C~~~f~~~~~L  177 (190)
T 2i13_A          153 QRTHTGEKPYKCPECGKSFSRRDAL  177 (190)
T ss_dssp             HHHHHCCCCEECTTTCCEESSHHHH
T ss_pred             HHhcCCCCCeECCCCCCccCCHHHH
Confidence            887554  78888 88888776543

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.30  E-value=5.5e-13  Score=122.67  Aligned_cols=88  Identities=18%  Similarity=0.548  Sum_probs=72.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHH
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEK  473 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~k  473 (502)
                      +..++.|..|++.|. ...|..|.. |.++++|.|+.  ||+.|.. ..|..|         |.|+.|++.|. .+.|..
T Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  123 (190)
T 2i13_A           46 GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA  123 (190)
T ss_dssp             --CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcc--cCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHH
Confidence            456788999999997 488888987 77888999998  9999987 777776         67999999998 888999


Q ss_pred             hhhcccc--eeeec-CCccccccccc
Q 010753          474 HMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       474 H~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |+++|+.  ||.|+ |++.|.....+
T Consensus       124 H~~~h~~~~~~~C~~C~~~f~~~~~L  149 (190)
T 2i13_A          124 HQRTHTGEKPYKCPECGKSFSREDNL  149 (190)
T ss_dssp             HHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             HHHHhCCCCCeECCCCCcccCCHHHH
Confidence            9998664  89999 99999887654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.27  E-value=1.1e-12  Score=112.08  Aligned_cols=88  Identities=17%  Similarity=0.501  Sum_probs=74.8

Q ss_pred             ccCccccc--ccCcccc-cchHHhHhhhccCceeeccccccCccccc-ccccCc---------ccCcc--CCCccC-hhh
Q 010753          407 EMDTVQCK--NCKRFIP-SRSIVLHEAYCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDK--CGQGLQ-RRE  470 (502)
Q Consensus       407 ~~~~~~C~--nC~k~~~-~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~--Cgk~f~-~s~  470 (502)
                      ++.++.|.  .|++.|. ...|..|.+..+.++|.|+.  ||+.|.. ..|..|         |.|+.  |++.|. .+.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~   79 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN   79 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTT--TCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCC--CCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHH
Confidence            56789999  8999997 58999999845899999999  9999998 777666         67975  999999 999


Q ss_pred             HHHhhhcccc--eeee--c-CCccccccccc
Q 010753          471 MEKHMKVFHE--QCSC--P-CGVVLENAAMV  496 (502)
Q Consensus       471 l~kH~~i~Ht--p~~C--~-Cg~~f~~~~~~  496 (502)
                      |..|+++|+.  ||.|  . |++.|.+.+.+
T Consensus        80 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L  110 (124)
T 1ubd_C           80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL  110 (124)
T ss_dssp             HHHHHHHHHCCCCCCCCSTTCCCCCSSTTTT
T ss_pred             HHHHHHHhCCCCceECCCCCCCCccCCHHHH
Confidence            9999999665  9999  6 99999987655

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=103.12  Aligned_cols=78  Identities=26%  Similarity=0.580  Sum_probs=67.2

Q ss_pred             ccccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhH
Q 010753          405 SIEMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREM  471 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l  471 (502)
                      +.....+.|..|++.|. ...|..|++ |..+++|.|+.  |++.|.. ..|..|         |.|+.|++.|. ...|
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L   89 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTL   89 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSS--SCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCC--ccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHH
Confidence            44577899999999998 589999997 77899999999  9999998 777666         78999999999 9999


Q ss_pred             HHhhhcccc--eeee
Q 010753          472 EKHMKVFHE--QCSC  484 (502)
Q Consensus       472 ~kH~~i~Ht--p~~C  484 (502)
                      ..|+++|+.  |+.+
T Consensus        90 ~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           90 AVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHTTSCCCCCC
T ss_pred             HHHHHHhCCCCCCcC
Confidence            999999664  5543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.15  E-value=1.5e-11  Score=100.47  Aligned_cols=73  Identities=12%  Similarity=0.347  Sum_probs=64.0

Q ss_pred             cccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHH
Q 010753          406 IEMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREME  472 (502)
Q Consensus       406 ~~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~  472 (502)
                      ....++.|..|++.|. ...|..|.+ |..+++|.|+.  |++.|.. ..|..|         |.|+.|++.|. .+.|.
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   81 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLT   81 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSS--SCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCC--CCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHH
Confidence            3567899999999998 589999998 77889999998  9999998 777776         67999999999 99999


Q ss_pred             Hhhhcccc
Q 010753          473 KHMKVFHE  480 (502)
Q Consensus       473 kH~~i~Ht  480 (502)
                      .|+++||.
T Consensus        82 ~H~~~h~~   89 (96)
T 2dmd_A           82 VHLRSHTG   89 (96)
T ss_dssp             HHHTTCCS
T ss_pred             HHHHHhcC
Confidence            99999664

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.11  E-value=1.5e-11  Score=97.14  Aligned_cols=68  Identities=21%  Similarity=0.529  Sum_probs=57.8

Q ss_pred             cccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhh
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMK  476 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~  476 (502)
                      ++.|..|++.|. ...|..|.+ |.++++|.|+.  ||+.|.. ..|..|         |.|+.||+.|. .+.|..|++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSS--SCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCc--CChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHH
Confidence            478999999998 488999997 77899999998  9999987 777666         67888888888 888888888


Q ss_pred             ccc
Q 010753          477 VFH  479 (502)
Q Consensus       477 i~H  479 (502)
                      +|+
T Consensus        79 ~H~   81 (82)
T 2kmk_A           79 KHT   81 (82)
T ss_dssp             HHC
T ss_pred             hhC
Confidence            854

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.10  E-value=2.2e-11  Score=111.86  Aligned_cols=87  Identities=15%  Similarity=0.482  Sum_probs=48.4

Q ss_pred             cCcccc--cccCcccc-cchHHhHhh-hccCceeecc--ccccCccccc-ccccCc-----------ccC--ccCCCccC
Q 010753          408 MDTVQC--KNCKRFIP-SRSIVLHEA-YCSRHSVACQ--HAGCGMVLRT-EEARDH-----------VHC--DKCGQGLQ  467 (502)
Q Consensus       408 ~~~~~C--~nC~k~~~-~~~l~lHe~-~C~rn~~~C~--~~~Cgk~F~k-~~l~~H-----------~hC--~~Cgk~f~  467 (502)
                      ..++.|  ..|++.|. ...|..|.+ |.++++|.|+  .  ||+.|.. ..|..|           |.|  +.||+.|.
T Consensus        40 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~  117 (190)
T 1tf6_A           40 EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG--CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFK  117 (190)
T ss_dssp             CCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSS--CCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECS
T ss_pred             CCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCC--CCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccC
Confidence            345566  55666665 355666665 5555666666  4  6666655 444333           345  55666666


Q ss_pred             -hhhHHHhhhcccc--eeee--c-CCccccccccc
Q 010753          468 -RREMEKHMKVFHE--QCSC--P-CGVVLENAAMV  496 (502)
Q Consensus       468 -~s~l~kH~~i~Ht--p~~C--~-Cg~~f~~~~~~  496 (502)
                       .+.|..|+++|+.  ||.|  . |++.|.+.+.+
T Consensus       118 ~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L  152 (190)
T 1tf6_A          118 KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRL  152 (190)
T ss_dssp             SHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHH
T ss_pred             CHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHH
Confidence             6666666666443  5666  3 66666554433

>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A

Probab=99.09  E-value=2.2e-09  Score=101.64  Aligned_cols=144  Identities=19%  Similarity=0.167  Sum_probs=115.6

Q ss_pred             CCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEee-eeeC--CCceeccHHHHHhcCC
Q 010753           91 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLE-FTAD--EGFVGLPPHVWRNLFP  167 (502)
Q Consensus        91 gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVlE-FsA~--EG~v~LP~wm~~~L~~  167 (502)
                      -..+.|+|++|++|-   ++ ++= +.+|.-                ++.++|-|.. +..+  .|.|.|..|+++|+++
T Consensus        21 r~ivrl~p~~m~~Lg---l~-~GD-~V~I~G----------------~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv   79 (185)
T 1cz4_A           21 MSRVRLDESSRRLLD---AE-IGD-VVEIEK----------------VRKTVGRVYRARPEDENKGIVRIDSVMRNNCGA   79 (185)
T ss_dssp             SSEEEECHHHHHTTC---CC-TTC-EEEEES----------------SSEEEEEEEECSSTTTTTSEEECCHHHHHHHTC
T ss_pred             CCEEEECHHHHHHcC---CC-CCC-EEEEEc----------------CCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCC
Confidence            356999999999883   21 111 255542                5689999986 3333  5899999999999998


Q ss_pred             CCCCCCceEEEEEEecCCcceEEEeecc---CCCCCCCChHHHHHHHhccCcccccCCEEEEEE---CCE-EEEEEEEEE
Q 010753          168 SDTPNNSFVEVRYVRLPKGTYAKLQPEG---IGFAELPNQKAVLETSLRQHATLSQDDVLTVNY---GEL-AYKLKVLEL  240 (502)
Q Consensus       168 ~~~~~~~~V~v~~~~LPkGt~vkLqP~~---~~f~di~n~KavLE~~LR~~stLT~Gd~I~I~~---~~~-~y~l~V~e~  240 (502)
                      .   .|+.|+|+-+.+|.|+.|.|.|.+   ..+.-..+....|...|+++. |++||+|.+.+   .+. ...|.|.++
T Consensus        80 ~---iGD~V~V~~~~~~~A~~V~l~P~~~~~~~~~~~~~~~~~l~~~l~~rp-v~~Gd~v~v~~~~~~g~~~~~f~Vv~t  155 (185)
T 1cz4_A           80 S---IGDKVKVRKVRTEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRP-MLEQDNISVPGLTLAGQTGLLFKVVKT  155 (185)
T ss_dssp             C---TTCEEEEEEECCCBCSEEEEEEECSTTCCSCCCSSHHHHHHHHHTTCE-ECTTCEECCSSCCCSSCCCCEEEEEEE
T ss_pred             C---CCCEEEEEECCCCCccEEEEecccccccccccccchHHHHHHHHCCCc-ccCCCEEEEeeeccCCCeEEEEEEEEE
Confidence            8   578999999999999999999995   444323677889999999974 99999999985   566 889999999


Q ss_pred             cCCCceEEEcCceEEeccC
Q 010753          241 KPSSSVSVLETDIEVDIVS  259 (502)
Q Consensus       241 ~P~~aVsIidTDleVD~~~  259 (502)
                      +|+.++++|..|-+|++.+
T Consensus       156 ~P~~~~v~Vt~~T~I~i~~  174 (185)
T 1cz4_A          156 LPSKVPVEIGEETKIEIRE  174 (185)
T ss_dssp             SSSSSCEECCTTCEEEECS
T ss_pred             cCCCceEEEcCCeEEEECC
Confidence            9988688998888888853

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.09  E-value=2.8e-11  Score=107.48  Aligned_cols=88  Identities=17%  Similarity=0.342  Sum_probs=74.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh--hccCce--------eeccccccCccccc-ccccCc---------ccCcc--CC
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA--YCSRHS--------VACQHAGCGMVLRT-EEARDH---------VHCDK--CG  463 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~--~C~rn~--------~~C~~~~Cgk~F~k-~~l~~H---------~hC~~--Cg  463 (502)
                      +...+.|..|++.|. ...|..|.+  |.++.+        |.|+.  ||+.|.. ..|..|         |.|+.  |+
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR--EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTT--SSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCC--cccccCCHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            456789999999998 589999997  445443        79999  9999998 778777         78988  99


Q ss_pred             CccC-hhhHHHhhhcccc--eeeec---CCccccccccc
Q 010753          464 QGLQ-RREMEKHMKVFHE--QCSCP---CGVVLENAAMV  496 (502)
Q Consensus       464 k~f~-~s~l~kH~~i~Ht--p~~C~---Cg~~f~~~~~~  496 (502)
                      +.|. .+.|..|+++|+.  ||.|.   |++.|.+.+.+
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L  138 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDR  138 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHH
T ss_pred             CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHH
Confidence            9999 9999999999765  99997   99999987654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.08  E-value=2.5e-11  Score=101.92  Aligned_cols=79  Identities=14%  Similarity=0.343  Sum_probs=67.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHH
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEK  473 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~k  473 (502)
                      ..+++.| .|++.|. ...|..|.+ |..+++|.|+.  |++.|.. ..|..|         |.|+.|++.|. .+.|..
T Consensus         7 ~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (110)
T 2csh_A            7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHR   83 (110)
T ss_dssp             CCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTT--TSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHH
T ss_pred             CCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCC--CCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHH
Confidence            5678999 9999998 489999998 77899999999  9999998 777666         67999999999 999999


Q ss_pred             hhhcccceeeec-CCc
Q 010753          474 HMKVFHEQCSCP-CGV  488 (502)
Q Consensus       474 H~~i~Htp~~C~-Cg~  488 (502)
                      |++.||..+.+. +..
T Consensus        84 H~~~~~~~~~~~~~~~   99 (110)
T 2csh_A           84 HVTSCTKSYEAAKAEQ   99 (110)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHccccccchhhcc
Confidence            999988766655 443

>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B

Probab=99.08  E-value=1.9e-09  Score=104.13  Aligned_cols=146  Identities=18%  Similarity=0.207  Sum_probs=118.6

Q ss_pred             CCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEeee-eeCCCceeccHHHHHhcCCC
Q 010753           90 SGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEF-TADEGFVGLPPHVWRNLFPS  168 (502)
Q Consensus        90 ~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVlEF-sA~EG~v~LP~wm~~~L~~~  168 (502)
                      ....+.|+|+++++|-   ++ ++ =+.+|+..              ..+.|+|-|+.. ..+.|.|.|..++++||+..
T Consensus        38 Drgivrl~p~~m~~Lg---l~-~G-D~V~I~Gk--------------r~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~   98 (211)
T 3qwz_A           38 DNSVVSLSQPKMDELQ---LF-RG-DTVLLKGX--------------KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVR   98 (211)
T ss_dssp             CTTEEEECHHHHHHHT---CC-BT-CEEEEECS--------------TTCEEEEEEEECTTSCTTEEEECHHHHHHTTCC
T ss_pred             CCcEEEECHHHHHHcC---CC-CC-CEEEEeCC--------------CCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCC
Confidence            3678999999999993   31 11 14567642              244899999864 45679999999999999988


Q ss_pred             CCCCCceEEEEEE-ecCCcceEEEeeccCCCCCCC-C-hHHHHHHHhcc-CcccccCCEEEEEECCEEEEEEEEEEcCCC
Q 010753          169 DTPNNSFVEVRYV-RLPKGTYAKLQPEGIGFAELP-N-QKAVLETSLRQ-HATLSQDDVLTVNYGELAYKLKVLELKPSS  244 (502)
Q Consensus       169 ~~~~~~~V~v~~~-~LPkGt~vkLqP~~~~f~di~-n-~KavLE~~LR~-~stLT~Gd~I~I~~~~~~y~l~V~e~~P~~  244 (502)
                         .|+.|.|+-+ .++.|+.|.|.|.+..+..+. | ...+|...|.+ |-.+++||+|.|.+.+..+.|.|++++|+ 
T Consensus        99 ---iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~-  174 (211)
T 3qwz_A           99 ---LGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPS-  174 (211)
T ss_dssp             ---TTCEEEEEECTTCCBCSEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESS-
T ss_pred             ---CCCEEEEEECCCCCCceEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCC-
Confidence               5789999999 899999999999865543333 3 46788888874 89999999999999988999999999997 


Q ss_pred             ceEEEcCceEEecc
Q 010753          245 SVSVLETDIEVDIV  258 (502)
Q Consensus       245 aVsIidTDleVD~~  258 (502)
                      ++++|..|-+|++.
T Consensus       175 g~viV~~~T~I~~~  188 (211)
T 3qwz_A          175 PYCIVAPDTVIHCE  188 (211)
T ss_dssp             SEEEECTTCEEECC
T ss_pred             CCEEECCCcEEEEc
Confidence            68899888888884

>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A

Probab=99.08  E-value=3e-09  Score=100.90  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=114.4

Q ss_pred             CCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEeee-eeCCCceeccHHHHHhcCCC
Q 010753           90 SGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEF-TADEGFVGLPPHVWRNLFPS  168 (502)
Q Consensus        90 ~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVlEF-sA~EG~v~LP~wm~~~L~~~  168 (502)
                      ....+.|+|+++++|-   ++ ++= +.+|+..              .++.|+|-|+.. ..+.|.|.|..++++||+..
T Consensus        35 D~givrl~p~~m~~Lg---l~-~GD-~V~I~Gk--------------r~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~   95 (187)
T 3tiw_A           35 DNSVVSLSQPKMDELQ---LF-RGD-TVLLKGK--------------KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVR   95 (187)
T ss_dssp             CTTEEEECHHHHHHHT---CC-TTC-EEEEECS--------------TTCEEEEEEEECTTSCTTEEEECHHHHHHTTCC
T ss_pred             CCcEEEECHHHHHHcC---CC-CCC-EEEEECC--------------CCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCC
Confidence            3668999999999993   31 111 4566642              244899999875 45679999999999999988


Q ss_pred             CCCCCceEEEEEE-ecCCcceEEEeeccCCCCCCC-C-hHHHHHHHhcc-CcccccCCEEEEEECCEEEEEEEEEEcCCC
Q 010753          169 DTPNNSFVEVRYV-RLPKGTYAKLQPEGIGFAELP-N-QKAVLETSLRQ-HATLSQDDVLTVNYGELAYKLKVLELKPSS  244 (502)
Q Consensus       169 ~~~~~~~V~v~~~-~LPkGt~vkLqP~~~~f~di~-n-~KavLE~~LR~-~stLT~Gd~I~I~~~~~~y~l~V~e~~P~~  244 (502)
                         .|+.|.|+-+ .++.|+.|.|.|.+.....+. | ....|...|.. |-.+++||+|.|.+.+..+.|.|++++|+ 
T Consensus        96 ---iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~-  171 (187)
T 3tiw_A           96 ---LGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS-  171 (187)
T ss_dssp             ---TTCEEEEEECTTCEECSEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESS-
T ss_pred             ---CCCEEEEEECCCCCCceEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCC-
Confidence               5789999999 899999999999865432232 3 46778888884 89999999999999989999999999997 


Q ss_pred             ceEEEcCceEEecc
Q 010753          245 SVSVLETDIEVDIV  258 (502)
Q Consensus       245 aVsIidTDleVD~~  258 (502)
                      ++++|..|=+|.++
T Consensus       172 ~~v~V~~~T~I~~e  185 (187)
T 3tiw_A          172 PYCIVAPDTVIHCE  185 (187)
T ss_dssp             SEEECCTTCEEECC
T ss_pred             CCEEECCCcEEEec
Confidence            77788777666553

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.07  E-value=1.2e-11  Score=110.14  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          422 SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       422 ~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      ..++.-|+. +.|+++|+|+.  ||++|.. +.|..|         |.|+.||++|. .+.|..|+++|..  ||.|+ |
T Consensus         7 ~~h~~h~~~~h~Gek~y~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   84 (133)
T 2lt7_A            7 VKHDDHYELIVDGRVYYICIV--CKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC   84 (133)
T ss_dssp             CCCSSEEEEEETTEEEEEETT--TCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSS
T ss_pred             HHHHhhceeecCCCcCeECCC--CCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCC
Confidence            344555665 67999999999  9999998 888888         67999999999 9999999999433  99999 9


Q ss_pred             Cccccccccc
Q 010753          487 GVVLENAAMV  496 (502)
Q Consensus       487 g~~f~~~~~~  496 (502)
                      |+.|.+.+.+
T Consensus        85 ~k~F~~~~~L   94 (133)
T 2lt7_A           85 GKSFINYQFM   94 (133)
T ss_dssp             CCEESSHHHH
T ss_pred             CCCcCCHHHH
Confidence            9999987765

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.06  E-value=6e-11  Score=96.66  Aligned_cols=72  Identities=21%  Similarity=0.554  Sum_probs=61.5

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc-----------ccCccCCCccC-hhhH
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH-----------VHCDKCGQGLQ-RREM  471 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H-----------~hC~~Cgk~f~-~s~l  471 (502)
                      ....+.|..|++.|. ...|..|++ |.++++|.|+.  |++.|.. ..|..|           |.|+.|++.|. .+.|
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L   81 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL   81 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSS--SCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHH
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCC--CCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHH
Confidence            567899999999998 589999998 77899999998  9999987 666555           67999999999 8999


Q ss_pred             HHhhhcccc
Q 010753          472 EKHMKVFHE  480 (502)
Q Consensus       472 ~kH~~i~Ht  480 (502)
                      ..|++..|+
T Consensus        82 ~~H~~~~H~   90 (95)
T 2yt9_A           82 NGHIKQVHS   90 (95)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHhcC
Confidence            999874464

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.06  E-value=5e-11  Score=95.98  Aligned_cols=71  Identities=23%  Similarity=0.486  Sum_probs=61.0

Q ss_pred             cCccccc--ccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHH
Q 010753          408 MDTVQCK--NCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREME  472 (502)
Q Consensus       408 ~~~~~C~--nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~  472 (502)
                      +.++.|.  .|++.|. ...|..|.+ |.++++|.|+.  ||+.|.. ..|..|         |.|+.||+.|. .+.|.
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   79 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK   79 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCC--CCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHH
Confidence            4678998  7999998 489999997 77899999998  9999998 777777         67999999999 89999


Q ss_pred             Hhhhcccc
Q 010753          473 KHMKVFHE  480 (502)
Q Consensus       473 kH~~i~Ht  480 (502)
                      .|+++|+.
T Consensus        80 ~H~~~H~~   87 (90)
T 1a1h_A           80 RHTKIHLR   87 (90)
T ss_dssp             HHHGGGGC
T ss_pred             HHHHHhcc
Confidence            99998553

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.02  E-value=8.5e-11  Score=107.95  Aligned_cols=88  Identities=19%  Similarity=0.491  Sum_probs=75.7

Q ss_pred             ccCcccc--cccCcccc-cchHHhHhh-hccCceeec--cccccCccccc-ccccCc---------ccCc--cCCCccC-
Q 010753          407 EMDTVQC--KNCKRFIP-SRSIVLHEA-YCSRHSVAC--QHAGCGMVLRT-EEARDH---------VHCD--KCGQGLQ-  467 (502)
Q Consensus       407 ~~~~~~C--~nC~k~~~-~~~l~lHe~-~C~rn~~~C--~~~~Cgk~F~k-~~l~~H---------~hC~--~Cgk~f~-  467 (502)
                      ..+.+.|  ..|++.|. ...|..|.+ |.++++|.|  +.  ||+.|.. ..|..|         |.|+  .|++.|. 
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   86 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEG--CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT   86 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTT--CCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESC
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCC--CChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCC
Confidence            5678999  68999998 589999997 889999999  76  9999998 777766         6799  8999999 


Q ss_pred             hhhHHHhhhcccc----eeee--c-CCccccccccc
Q 010753          468 RREMEKHMKVFHE----QCSC--P-CGVVLENAAMV  496 (502)
Q Consensus       468 ~s~l~kH~~i~Ht----p~~C--~-Cg~~f~~~~~~  496 (502)
                      ...|..|++..|.    +|.|  + |++.|...+.+
T Consensus        87 ~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L  122 (190)
T 1tf6_A           87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL  122 (190)
T ss_dssp             HHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHH
T ss_pred             HHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHH
Confidence            9999999954462    8999  9 99999987655

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.00  E-value=2.2e-10  Score=93.90  Aligned_cols=74  Identities=19%  Similarity=0.436  Sum_probs=60.5

Q ss_pred             cccCcccccc--cCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhh
Q 010753          406 IEMDTVQCKN--CKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RRE  470 (502)
Q Consensus       406 ~~~~~~~C~n--C~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~  470 (502)
                      .....+.|..  |++.|. ...|..|.+ |.++++|.|+..+|++.|.. ..|..|         |.|+.|++.|. .+.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHH
Confidence            3567899996  999998 599999998 78899999972239999987 777666         67888988888 888


Q ss_pred             HHHhhhccc
Q 010753          471 MEKHMKVFH  479 (502)
Q Consensus       471 l~kH~~i~H  479 (502)
                      |..|+++|+
T Consensus        91 l~~H~~~H~   99 (100)
T 2ebt_A           91 LALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            888888843

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.99  E-value=8.7e-11  Score=103.85  Aligned_cols=89  Identities=18%  Similarity=0.439  Sum_probs=68.6

Q ss_pred             cCccccc-----ccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCcc--CCCccC-
Q 010753          408 MDTVQCK-----NCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDK--CGQGLQ-  467 (502)
Q Consensus       408 ~~~~~C~-----nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~--Cgk~f~-  467 (502)
                      ..++.|.     .|++.|. ...|..|.+ |.++++|.|+..+||+.|.. ..|..|         |.|+.  ||+.|. 
T Consensus        32 ~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  111 (155)
T 2gli_A           32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN  111 (155)
T ss_dssp             SSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESS
T ss_pred             CcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCC
Confidence            3456655     4458887 488999987 77889999972239999988 777776         67988  999998 


Q ss_pred             hhhHHHhh-hcccc--eeee--c-CCccccccccc
Q 010753          468 RREMEKHM-KVFHE--QCSC--P-CGVVLENAAMV  496 (502)
Q Consensus       468 ~s~l~kH~-~i~Ht--p~~C--~-Cg~~f~~~~~~  496 (502)
                      .+.|..|+ ++|..  ||.|  + |++.|.+.+.+
T Consensus       112 ~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L  146 (155)
T 2gli_A          112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL  146 (155)
T ss_dssp             SSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHH
T ss_pred             HHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHH
Confidence            89999998 66433  8999  4 99999886644

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.99  E-value=1.2e-10  Score=92.34  Aligned_cols=70  Identities=21%  Similarity=0.440  Sum_probs=61.8

Q ss_pred             cccc--cccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc------ccCcc---CCCccC-hhhHHHh
Q 010753          410 TVQC--KNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH------VHCDK---CGQGLQ-RREMEKH  474 (502)
Q Consensus       410 ~~~C--~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H------~hC~~---Cgk~f~-~s~l~kH  474 (502)
                      ++.|  ..|++.|. ...|..|++ |.++++|.|+..+||+.|.. ..|..|      +.|+.   |++.|. .+.|..|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~C~~~~~C~~~f~~~~~l~~H   80 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH   80 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHSEECCSCSSCCCEESSHHHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCCCCCCCCCCccCCHHHHHHH
Confidence            4789  99999998 599999998 78999999975569999998 888777      67999   999999 9999999


Q ss_pred             hhccc
Q 010753          475 MKVFH  479 (502)
Q Consensus       475 ~~i~H  479 (502)
                      ++++|
T Consensus        81 ~~~hh   85 (85)
T 2j7j_A           81 VAECH   85 (85)
T ss_dssp             HHHCC
T ss_pred             HHhcC
Confidence            99866

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=3.8e-10  Score=95.39  Aligned_cols=72  Identities=13%  Similarity=0.259  Sum_probs=60.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh---hccCce-eeccccccCccc--cc-ccccCc---------ccCccCCCccC-h
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA---YCSRHS-VACQHAGCGMVL--RT-EEARDH---------VHCDKCGQGLQ-R  468 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~---~C~rn~-~~C~~~~Cgk~F--~k-~~l~~H---------~hC~~Cgk~f~-~  468 (502)
                      ...++.|..|++.|. ...|..|++   +...++ +.|+.  ||+.|  .. ..|..|         |.|+.||+.|. .
T Consensus        16 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~--C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~   93 (115)
T 2dmi_A           16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNN--NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESL   93 (115)
T ss_dssp             CCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCC--CCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSH
T ss_pred             CCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCC--CCcccccccHHHHHHHhhccCCCcceECCCCCCccCCH
Confidence            467899999999998 589999997   445555 45998  99999  55 788777         78999999999 9


Q ss_pred             hhHHHhhhcccc
Q 010753          469 REMEKHMKVFHE  480 (502)
Q Consensus       469 s~l~kH~~i~Ht  480 (502)
                      +.|..|++++|.
T Consensus        94 ~~L~~H~~~hh~  105 (115)
T 2dmi_A           94 QDLSVHMIKTKH  105 (115)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCC
Confidence            999999999775

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.96  E-value=2.1e-10  Score=101.80  Aligned_cols=76  Identities=20%  Similarity=0.433  Sum_probs=65.9

Q ss_pred             cccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCcc--CCCccC-hhhHHHh
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDK--CGQGLQ-RREMEKH  474 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~--Cgk~f~-~s~l~kH  474 (502)
                      .+.|..|++.|. ...|..|.+ |.++++|.|+..+||+.|.. ..|..|         |.|+.  |++.|. .+.|..|
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H  141 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH  141 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHS
T ss_pred             ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHH
Confidence            378999999998 589999998 78999999985459999998 777666         78997  999999 9999999


Q ss_pred             hhcccc--eeeec
Q 010753          475 MKVFHE--QCSCP  485 (502)
Q Consensus       475 ~~i~Ht--p~~C~  485 (502)
                      +++|+.  ||.|.
T Consensus       142 ~~~H~~~k~~~c~  154 (155)
T 2rpc_A          142 MHVHTSDKSGPSS  154 (155)
T ss_dssp             STTTTSCCCSCSC
T ss_pred             HHHhcCCCCCCCC
Confidence            999665  88874

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.95  E-value=3.2e-11  Score=97.88  Aligned_cols=70  Identities=24%  Similarity=0.453  Sum_probs=54.9

Q ss_pred             cCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc--------ccCccCCCccC-hhhHHHhh
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH--------VHCDKCGQGLQ-RREMEKHM  475 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H--------~hC~~Cgk~f~-~s~l~kH~  475 (502)
                      ++++.|..|++.|. ...|..|++ |.++++|.|+.  ||+.|.. ..|..|        +.|+.|++.|. .+.|..|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~   78 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEV   78 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTT--TCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCC--CCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHH
Confidence            36789999999997 599999997 88999999997  8877776 666666        45777777776 67777776


Q ss_pred             hccc
Q 010753          476 KVFH  479 (502)
Q Consensus       476 ~i~H  479 (502)
                      +.+|
T Consensus        79 ~~~h   82 (88)
T 1llm_C           79 ARLK   82 (88)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.94  E-value=2.1e-10  Score=96.19  Aligned_cols=77  Identities=19%  Similarity=0.438  Sum_probs=64.4

Q ss_pred             cccCcccccccCcccc-cchHHhHhhhccCceeeccccccCccccc-ccccCc--------ccCccCCCccC-hhhHHHh
Q 010753          406 IEMDTVQCKNCKRFIP-SRSIVLHEAYCSRHSVACQHAGCGMVLRT-EEARDH--------VHCDKCGQGLQ-RREMEKH  474 (502)
Q Consensus       406 ~~~~~~~C~nC~k~~~-~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k-~~l~~H--------~hC~~Cgk~f~-~s~l~kH  474 (502)
                      ...+++.|..|++.|. ...|..|++.+ .++|.|+.  ||+.|.. ..|..|        |.|+.|++.|. .+.|..|
T Consensus        12 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H-~~~~~C~~--C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~~~L~~H   88 (107)
T 1wjp_A           12 ENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPY--CSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRH   88 (107)
T ss_dssp             CCCCCCBCTTTCCBCSSHHHHHHHHHHH-HHSBCCTT--TCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHC-CCCccCCC--CCCccCCHHHHHHHHHcCCCCCccCccccchhCCHHHHHHH
Confidence            3567899999999998 58899999843 57999999  9999998 777666        78999999999 9999999


Q ss_pred             hhcccc---eeeec
Q 010753          475 MKVFHE---QCSCP  485 (502)
Q Consensus       475 ~~i~Ht---p~~C~  485 (502)
                      ++..|+   ||.|.
T Consensus        89 ~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           89 QVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHTSCCCCCCCCC
T ss_pred             HHHHcCCCCCCCCC
Confidence            984465   77764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.93  E-value=4.6e-10  Score=99.16  Aligned_cols=88  Identities=17%  Similarity=0.378  Sum_probs=73.2

Q ss_pred             CcccccccCcccc-cchHHhHhh----hccCceeecccccc---Cccccc-ccccCc---------ccCcc--CCCccC-
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA----YCSRHSVACQHAGC---GMVLRT-EEARDH---------VHCDK--CGQGLQ-  467 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~----~C~rn~~~C~~~~C---gk~F~k-~~l~~H---------~hC~~--Cgk~f~-  467 (502)
                      -++.|..|++.|. ...|..|.+    |.++++|.|+..+|   ++.|.. ..|..|         |.|+.  |++.|. 
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   81 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR   81 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC
Confidence            3578999999998 589999985    56789999975223   599998 778777         78985  999999 


Q ss_pred             hhhHHHhhhcccc--eeeec---CCccccccccc
Q 010753          468 RREMEKHMKVFHE--QCSCP---CGVVLENAAMV  496 (502)
Q Consensus       468 ~s~l~kH~~i~Ht--p~~C~---Cg~~f~~~~~~  496 (502)
                      ...|..|+++|+.  ||.|+   |++.|.+.+.+
T Consensus        82 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L  115 (155)
T 2gli_A           82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDR  115 (155)
T ss_dssp             HHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTT
T ss_pred             HHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHH
Confidence            9999999999664  99998   99999887655

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=4.9e-11  Score=100.92  Aligned_cols=72  Identities=17%  Similarity=0.234  Sum_probs=61.4

Q ss_pred             chHHhHhh-hccCceeeccccccCccccc-ccccCc------------ccCccCCCcc--C-hhhHHHhhhcccc--eee
Q 010753          423 RSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH------------VHCDKCGQGL--Q-RREMEKHMKVFHE--QCS  483 (502)
Q Consensus       423 ~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H------------~hC~~Cgk~f--~-~s~l~kH~~i~Ht--p~~  483 (502)
                      ..|..|.+ |.++++|.|+.  ||+.|.. ..|..|            +.|+.|++.|  . ...|..|+++|+.  ||.
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~   82 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK   82 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSS--SSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB
T ss_pred             hhhhhheeeeCCCCCEECCc--cCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE
Confidence            56778887 78899999999  9999998 777666            2399999999  6 8999999999654  999


Q ss_pred             ec-CCccccccccc
Q 010753          484 CP-CGVVLENAAMV  496 (502)
Q Consensus       484 C~-Cg~~f~~~~~~  496 (502)
                      |+ |++.|...+.+
T Consensus        83 C~~C~k~f~~~~~L   96 (115)
T 2dmi_A           83 CMYCGHSFESLQDL   96 (115)
T ss_dssp             CSSSCCBCSSHHHH
T ss_pred             CCCCCCccCCHHHH
Confidence            99 99999987655

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=98.91  E-value=4.3e-10  Score=90.25  Aligned_cols=70  Identities=24%  Similarity=0.534  Sum_probs=55.8

Q ss_pred             cCcccccc--cCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHH
Q 010753          408 MDTVQCKN--CKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREME  472 (502)
Q Consensus       408 ~~~~~C~n--C~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~  472 (502)
                      ...+.|..  |++.|. ...|..|++ |.++++|.|+..+||+.|.. ..|..|         |.|+.||+.|. .+.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            45789999  999998 599999998 78899999972238888877 666666         56888888887 77888


Q ss_pred             Hhhhc
Q 010753          473 KHMKV  477 (502)
Q Consensus       473 kH~~i  477 (502)
                      .|+++
T Consensus        83 ~H~~~   87 (89)
T 2wbs_A           83 LHMKR   87 (89)
T ss_dssp             HHGGG
T ss_pred             HHHHh
Confidence            88777

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.91  E-value=6.4e-10  Score=86.53  Aligned_cols=53  Identities=21%  Similarity=0.515  Sum_probs=45.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      ++++|.|..|||.|. ..+|..|++ |.++++|.|++                    ||++|. .++|..|+++ |+
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~--------------------C~k~F~~~~~L~~H~~~-Ht   56 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPE--------------------CGKCFRDQSEVNRHLKV-HQ   56 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTT--------------------TCCEESSHHHHHHHGGG-GS
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCC--------------------CCCCcCCHHHHHHHhCc-cC
Confidence            368999999999998 599999998 88999988775                    567777 8899999999 54

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=98.91  E-value=2.2e-10  Score=92.14  Aligned_cols=64  Identities=16%  Similarity=0.439  Sum_probs=53.6

Q ss_pred             cCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          433 SRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       433 ~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      ++++|.|+..+||+.|.. ..|..|         |.|+.|++.|. .+.|..|+++|+.  ||.|+ |++.|...+.+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   78 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER   78 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHH
Confidence            468999982239999998 788777         68999999999 9999999999665  99999 99999987654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.89  E-value=8.8e-10  Score=86.86  Aligned_cols=67  Identities=19%  Similarity=0.521  Sum_probs=55.1

Q ss_pred             ccCcccccc--cCcccc-cchHHhHhh--hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          407 EMDTVQCKN--CKRFIP-SRSIVLHEA--YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       407 ~~~~~~C~n--C~k~~~-~~~l~lHe~--~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      +...+.|..  |++.|. ..+|..|.+  |.++++|.|+.                  +.|++.|. .+.|..|+++|+.
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~------------------~~C~k~f~~~~~L~~H~~~H~~   65 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPE------------------PACGKSFNFKKHLKEHMKLHSD   65 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSC------------------TTTCCEESSHHHHHHHHHHHHT
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCC------------------CCCcCccCCHHHHHHHHHHhCC
Confidence            456788886  999998 589999996  66788877763                  23888898 9999999999664


Q ss_pred             --eeeec-CCcccc
Q 010753          481 --QCSCP-CGVVLE  491 (502)
Q Consensus       481 --p~~C~-Cg~~f~  491 (502)
                        ||.|. ||+.|.
T Consensus        66 ~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           66 TRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCCSCCSSSCCCC
T ss_pred             CCCeeCCCCCCCCC
Confidence              99999 999984

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.88  E-value=6.4e-10  Score=94.23  Aligned_cols=72  Identities=25%  Similarity=0.554  Sum_probs=63.5

Q ss_pred             ccCcccccccCcccc-cchHHhHhh----hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhh
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA----YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RRE  470 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~----~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~  470 (502)
                      ...++.|..|++.|. ...|..|+.    +..+++|.|+.  ||+.|.. ..|..|         |.|+.|++.|. .+.
T Consensus        32 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  109 (124)
T 2dlq_A           32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKD  109 (124)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS--SCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHH
T ss_pred             CCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC--CCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHH
Confidence            457899999999997 589999987    35788999999  9999998 888777         78999999999 999


Q ss_pred             HHHhhhcccc
Q 010753          471 MEKHMKVFHE  480 (502)
Q Consensus       471 l~kH~~i~Ht  480 (502)
                      |..|++..|+
T Consensus       110 l~~H~~~~H~  119 (124)
T 2dlq_A          110 LQSHMIKLHS  119 (124)
T ss_dssp             HHHHHHHTSS
T ss_pred             HHHHHHHHCC
Confidence            9999986675

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=98.87  E-value=7e-10  Score=94.59  Aligned_cols=75  Identities=17%  Similarity=0.406  Sum_probs=64.3

Q ss_pred             cccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCc--cCCCccC-hhh
Q 010753          406 IEMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCD--KCGQGLQ-RRE  470 (502)
Q Consensus       406 ~~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~--~Cgk~f~-~s~  470 (502)
                      +....+.|..|++.|. ...|..|.+ |.++++|.|+..+||+.|.. ..|..|         |.|+  .||+.|. .+.
T Consensus        30 h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~  109 (124)
T 1ubd_C           30 HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN  109 (124)
T ss_dssp             GSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTT
T ss_pred             cCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHH
Confidence            4567899999999998 589999998 78999999973349999998 888777         7895  5999999 999


Q ss_pred             HHHhhhcccc
Q 010753          471 MEKHMKVFHE  480 (502)
Q Consensus       471 l~kH~~i~Ht  480 (502)
                      |..|+++|+.
T Consensus       110 L~~H~~~H~~  119 (124)
T 1ubd_C          110 LKSHILTHAK  119 (124)
T ss_dssp             THHHHHHHC-
T ss_pred             HHHHHHHHcc
Confidence            9999999654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.86  E-value=5e-10  Score=93.90  Aligned_cols=63  Identities=19%  Similarity=0.496  Sum_probs=56.0

Q ss_pred             hccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          431 YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |.++++|.| .  ||+.|.. ..|..|         |.|+.|++.|. ...|..|+++|+.  ||.|+ |++.|.+...+
T Consensus         5 h~~~k~~~C-~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            5 SSGDKLYPC-Q--CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCCCCCEEC-T--TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHH
T ss_pred             CCCCCCEec-c--CCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHH
Confidence            567999999 8  9999998 788777         78999999999 9999999999765  99999 99999987654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.86  E-value=4.8e-10  Score=91.40  Aligned_cols=63  Identities=19%  Similarity=0.562  Sum_probs=55.2

Q ss_pred             ccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          432 CSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       432 C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      -+.++|.|+.  |++.|.. ..|..|         |.|+.|++.|. ...|..|+++|+.  ||.|. |++.|.+...+
T Consensus         4 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   80 (96)
T 2dmd_A            4 GSSGPHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL   80 (96)
T ss_dssp             CCCCCCCBTT--TTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHH
T ss_pred             CCCcCeECCC--CCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHH
Confidence            3578999999  9999998 777666         67999999999 9999999999665  99999 99999987654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=98.84  E-value=8.8e-10  Score=92.92  Aligned_cols=70  Identities=19%  Similarity=0.492  Sum_probs=63.0

Q ss_pred             ccCccccc--ccCcccc-cchHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccC--ccCCCccC-hh
Q 010753          407 EMDTVQCK--NCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHC--DKCGQGLQ-RR  469 (502)
Q Consensus       407 ~~~~~~C~--nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC--~~Cgk~f~-~s  469 (502)
                      ...++.|.  .|++.|. ...|..|++ |.++++|.|+.  ||+.|.. ..|..|         |.|  +.||+.|. .+
T Consensus        33 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~  110 (119)
T 2jp9_A           33 GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT--CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD  110 (119)
T ss_dssp             TTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHH
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCc--cCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHH
Confidence            45789999  8999998 599999997 88999999999  9999998 888877         679  89999999 99


Q ss_pred             hHHHhhhcc
Q 010753          470 EMEKHMKVF  478 (502)
Q Consensus       470 ~l~kH~~i~  478 (502)
                      .|..|+++|
T Consensus       111 ~L~~H~~~H  119 (119)
T 2jp9_A          111 ELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999999983

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.82  E-value=1.4e-10  Score=94.08  Aligned_cols=61  Identities=18%  Similarity=0.362  Sum_probs=54.8

Q ss_pred             CceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc-eeeec-CCccccccccc
Q 010753          434 RHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE-QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       434 rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht-p~~C~-Cg~~f~~~~~~  496 (502)
                      +++|.|+.  ||+.|.. ..|..|         |.|+.||++|. .+.|..|++++|. ++.|+ |++.|.....+
T Consensus         1 ek~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L   74 (88)
T 1llm_C            1 MKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHL   74 (88)
T ss_dssp             CCCEECTT--TCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCC--CCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhh
Confidence            57899999  9999998 888777         78999999999 9999999999886 99999 99999887654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.82  E-value=6.4e-10  Score=87.72  Aligned_cols=59  Identities=24%  Similarity=0.659  Sum_probs=52.1

Q ss_pred             eeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          436 SVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       436 ~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      +|.|+.  ||+.|.. ..|..|         |.|+.|++.|. ...|..|+++|+.  ||.|+ |++.|.+.+.+
T Consensus         1 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKI--CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSS--SCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCC--CcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            589998  9999998 777777         68999999999 9999999999664  99999 99999987644

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.82  E-value=6e-10  Score=88.82  Aligned_cols=64  Identities=19%  Similarity=0.416  Sum_probs=49.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccC----ceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSR----HSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~r----n~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      ..+++.|..|++.|. ...|..|++ ++..    ++|.                    |+.|++.|. .+.|..|+++||
T Consensus        12 ~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~--------------------C~~C~~~f~~~~~L~~H~~~h~   71 (86)
T 1x6h_A           12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFV--------------------CSKCGKTFTRRNTMARHADNCA   71 (86)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEE--------------------CSSSCCEESCHHHHHHHHHHCC
T ss_pred             CCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceE--------------------CCCCCChhCCHHHHHHHHHHcc
Confidence            456788888888887 478888875 5544    4554                    456778888 899999999977


Q ss_pred             c--eeeec-CCccc
Q 010753          480 E--QCSCP-CGVVL  490 (502)
Q Consensus       480 t--p~~C~-Cg~~f  490 (502)
                      .  ++.|. |+.+|
T Consensus        72 ~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           72 GPDGVEGENSGPSS   85 (86)
T ss_dssp             CCCSCCCCCCCCCC
T ss_pred             CCCCcccCCCCCCC
Confidence            5  89999 99876

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.81  E-value=9.7e-10  Score=91.38  Aligned_cols=62  Identities=18%  Similarity=0.513  Sum_probs=54.9

Q ss_pred             cCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          433 SRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       433 ~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      .+++|.|+.  ||+.|.. ..|..|         |.|+.|++.|. ...|..|+++|+.  ||.|. |++.|.+...+
T Consensus        14 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L   89 (106)
T 2ee8_A           14 TKKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTL   89 (106)
T ss_dssp             CCCCCBCSS--SCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHH
T ss_pred             CCcCeECCC--CCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHH
Confidence            478899999  9999998 777777         78999999999 9999999999665  89999 99999987654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.80  E-value=9e-10  Score=89.60  Aligned_cols=63  Identities=24%  Similarity=0.593  Sum_probs=55.1

Q ss_pred             ccCceeeccccccCccccc-ccccCc---------ccCccCCCccC-hhhHHHhhhcccc----eeeec-CCcccccccc
Q 010753          432 CSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQ-RREMEKHMKVFHE----QCSCP-CGVVLENAAM  495 (502)
Q Consensus       432 C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~-~s~l~kH~~i~Ht----p~~C~-Cg~~f~~~~~  495 (502)
                      .++++|.|+.  |++.|.. ..|..|         |.|+.|++.|. ...|..|+++||.    ||.|+ |++.|.....
T Consensus         3 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~   80 (95)
T 2yt9_A            3 SGSSGVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDH   80 (95)
T ss_dssp             CCCSCEECSS--SCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHH
T ss_pred             CCCCCeECCC--CCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHH
Confidence            3678999999  9999998 777766         67999999999 9999999999764    79999 9999998765


Q ss_pred             c
Q 010753          496 V  496 (502)
Q Consensus       496 ~  496 (502)
                      +
T Consensus        81 L   81 (95)
T 2yt9_A           81 L   81 (95)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.4e-10  Score=88.26  Aligned_cols=62  Identities=16%  Similarity=0.254  Sum_probs=53.8

Q ss_pred             chHHhHhh-hccCceeeccccccCccccc-ccc--cCcccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          423 RSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEA--RDHVHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       423 ~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l--~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .+|..|++ |.++++|.|+.  ||+.|.. ..|  ...|.|+.||+.|. .+.|..|+++|+.  ||.|+ |
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~--C~k~f~~~~~l~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSK--CGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSS--SCCEEECCCCCCCSSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCc--ccchhCCHHHhCcCCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            56778887 77899999999  9999997 666  55689999999999 9999999999664  99998 7

>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1

Probab=98.75  E-value=2.7e-08  Score=93.66  Aligned_cols=160  Identities=17%  Similarity=0.141  Sum_probs=121.1

Q ss_pred             CCcEEEEEEeeeccCCCCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEeeeee--
Q 010753           73 GGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA--  150 (502)
Q Consensus        73 ~~g~~~~~~~~~~~~~~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVlEFsA--  150 (502)
                      ++|..+.-.|.    .....-+-||++++..|.-.     .=-..+|+-               ..+++|+|...+..  
T Consensus        10 ~~~~~~~v~~~----~~~~~~vrL~~~~~~~L~~~-----~gd~VeI~g---------------~~~t~~~~w~~~~~~~   65 (179)
T 1wlf_A           10 SGGAVVTVAFT----NARDCFLHLPRRLVAQLHLL-----QNQAIEVAS---------------DHQPTYLSWVEGRHFN   65 (179)
T ss_dssp             -CCEEEEEEEE----CCSSSCEEECHHHHHHTTCC-----TTCCEEEES---------------SSCCEEECEEECSSCC
T ss_pred             CCcEEEEEEEE----CCCCcEEECCHHHHHHcCCC-----CCcEEEEEe---------------CCeeEEEEEECCCCcc
Confidence            45555544443    23778999999999998431     123555653               24578888887754  


Q ss_pred             --CCCceeccHHHHHhcCCCCCCCCceEEEEE-EecCCcceEEEeeccCCCCCC-CChHHHHHHHhc-cCcccccCCEEE
Q 010753          151 --DEGFVGLPPHVWRNLFPSDTPNNSFVEVRY-VRLPKGTYAKLQPEGIGFAEL-PNQKAVLETSLR-QHATLSQDDVLT  225 (502)
Q Consensus       151 --~EG~v~LP~wm~~~L~~~~~~~~~~V~v~~-~~LPkGt~vkLqP~~~~f~di-~n~KavLE~~LR-~~stLT~Gd~I~  225 (502)
                        ..|.|-|...+.++||+.   .++.|.|+- ...|.++.|.|.|.+.+-+++ ++.-..||..|. ++-.+++||+|.
T Consensus        66 d~~~~~I~Id~~~r~n~gv~---~Gd~V~V~~~~~~~~A~~V~laP~~~dD~ei~e~~a~~le~~Ll~QiR~v~~G~~i~  142 (179)
T 1wlf_A           66 DQSENVAEINRQVGQKLGLS---SGDQVFLRPCSHVVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVP  142 (179)
T ss_dssp             ---CCEEEEEHHHHHHTTCC---TTCEEEEEECSCCEECSEEEEEESSHHHHHHHHHSCSSHHHHHHHHCCEECTTCEEE
T ss_pred             cCCCCEEEECHHHHhHCCCC---CCCEEEEEECCCCccceEEEEEcCCcCCeEEehhHHHHHHHHHhcCceeccCCCEEE
Confidence              458999999999999998   578999998 799999999999997532222 233345777776 488999999999


Q ss_pred             EEECC-EEEEEEEEEEcCCCceEEEcCceEEeccC
Q 010753          226 VNYGE-LAYKLKVLELKPSSSVSVLETDIEVDIVS  259 (502)
Q Consensus       226 I~~~~-~~y~l~V~e~~P~~aVsIidTDleVD~~~  259 (502)
                      |+..+ ...+|.|..+.|..++.+|..|=||.+.|
T Consensus       143 v~~~g~~~i~f~V~~~~P~~~~v~It~~TeI~v~p  177 (179)
T 1wlf_A          143 IWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQP  177 (179)
T ss_dssp             EESSSSCEEEEEEEEEESCCSSEECCTTCEEEECC
T ss_pred             EEecCCeEEEEEEEEeeCCCCeEEECCCcEEEEec
Confidence            99665 78999999999977889999999998865

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.75  E-value=1.8e-09  Score=90.35  Aligned_cols=63  Identities=17%  Similarity=0.359  Sum_probs=54.8

Q ss_pred             hccCceeeccccccCccccc-ccccCc-------ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          431 YCSRHSVACQHAGCGMVLRT-EEARDH-------VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k-~~l~~H-------~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |.++++|.|+.  |++.|.. ..|..|       |.|+.|++.|. ...|..|+. |+.  ||.|. |++.|.+...+
T Consensus        11 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A           11 VENKEVYQCRL--CNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCBCTT--TCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             cCCCcCeECCC--CCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            45689999999  9999998 888877       78999999999 999999994 443  99999 99999987654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.66  E-value=2e-09  Score=92.85  Aligned_cols=72  Identities=18%  Similarity=0.223  Sum_probs=59.3

Q ss_pred             ccCcccccccCcccc-------cchHHhHhhhccCceeeccccccCccccc-ccccCc-------ccCccCCCccC-hhh
Q 010753          407 EMDTVQCKNCKRFIP-------SRSIVLHEAYCSRHSVACQHAGCGMVLRT-EEARDH-------VHCDKCGQGLQ-RRE  470 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-------~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k-~~l~~H-------~hC~~Cgk~f~-~s~  470 (502)
                      ....+.|..|++.|.       ...|..|.+|.++++|.|+.  ||+.|.. ..|..|       |.|+.||++|. .+.
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~~  115 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL--CLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDS  115 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHCSEECTT--TCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHHH
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHHHhCCCCCeECCC--CCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHHH
Confidence            345677888887775       36777888899999999998  9999988 777666       67999999999 999


Q ss_pred             HHHhhhcccc
Q 010753          471 MEKHMKVFHE  480 (502)
Q Consensus       471 l~kH~~i~Ht  480 (502)
                      |..|+++||+
T Consensus       116 l~~H~~~h~~  125 (129)
T 2wbt_A          116 ALDHVCKKHN  125 (129)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHCC
Confidence            9999999765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.65  E-value=2.6e-08  Score=78.52  Aligned_cols=60  Identities=20%  Similarity=0.430  Sum_probs=49.4

Q ss_pred             ccccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc-
Q 010753          405 SIEMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE-  480 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht-  480 (502)
                      ....+++.|..|++.|. ...|..|++ |.++++|.|+                    .|++.|. .+.|..|+++|+. 
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--------------------~C~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCD--------------------ECGKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECS--------------------SSCCEESSHHHHHHHGGGSCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCC--------------------CCCCccCCHHHHHHHHHHhCCC
Confidence            34568899999999998 599999998 7788887776                    4667777 8899999999664 


Q ss_pred             -eeee
Q 010753          481 -QCSC  484 (502)
Q Consensus       481 -p~~C  484 (502)
                       ||.|
T Consensus        73 ~p~~C   77 (77)
T 2cot_A           73 GPSSG   77 (77)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence             8887

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=98.59  E-value=9.9e-09  Score=82.21  Aligned_cols=63  Identities=24%  Similarity=0.619  Sum_probs=53.0

Q ss_pred             CceeeccccccCccccc-ccccCc---------ccCc--cCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          434 RHSVACQHAGCGMVLRT-EEARDH---------VHCD--KCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       434 rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~--~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      ..+|.|+..+||+.|.. ..|..|         |.|+  .|++.|. ...|..|+++|+.  ||.|+ |++.|...+.+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHH
Confidence            35689987679999998 777666         6797  6999999 9999999999654  99999 99999887644

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.53  E-value=1.8e-08  Score=82.43  Aligned_cols=64  Identities=19%  Similarity=0.481  Sum_probs=53.6

Q ss_pred             cCceeeccccccCccccc-ccccCc---------ccCc--cCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          433 SRHSVACQHAGCGMVLRT-EEARDH---------VHCD--KCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       433 ~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~--~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      .+++|.|+..+||+.|.. ..|..|         |.|+  .|++.|. ...|..|+++|+.  ||.|+ |++.|.....+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            367899984349999998 778777         6796  6999999 9999999999664  99999 99999886543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.51  E-value=6e-08  Score=75.88  Aligned_cols=56  Identities=13%  Similarity=0.410  Sum_probs=45.5

Q ss_pred             ccccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          405 SIEMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      ....+++.|..|++.|. ..+|..|++ |.++++|.|+.                    |++.|. .+.|..|+++|+.
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~--------------------C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI--------------------CGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTT--------------------TCCEESCHHHHHHHHHHHCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCC--------------------CCchhCCHHHHHHHHHhcCC
Confidence            34578899999999998 599999998 77888887774                    556777 7889999998553

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.50  E-value=9.5e-08  Score=79.20  Aligned_cols=56  Identities=14%  Similarity=0.297  Sum_probs=44.4

Q ss_pred             ccccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          405 SIEMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      ....+.+.|..|+|.|. +.+|..|++ |.++++|.|+.                    |+++|. ++.|.+|++..|+
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~--------------------C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKY--------------------CPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTT--------------------SSCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCC--------------------CCCEeCCHHHHHHhCcccCc
Confidence            34567899999999998 599999997 88999988875                    556666 7788888654464

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.47  E-value=1.6e-08  Score=79.81  Aligned_cols=54  Identities=15%  Similarity=0.373  Sum_probs=40.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hc-cC-ceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YC-SR-HSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C-~r-n~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      .+++|.|..|++.|. ..+|..|++ +. .+ ++|.|+                    .|++.|. .+.|..|++++|+
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~--------------------~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCP--------------------HCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECS--------------------SSSCEESSHHHHHHHHHHTSC
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCC--------------------CCCCccCCHHHHHHHHHHhCC
Confidence            467788999998887 488888875 34 32 566666                    5667777 8899999998785

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.46  E-value=7.5e-08  Score=71.08  Aligned_cols=52  Identities=15%  Similarity=0.452  Sum_probs=40.5

Q ss_pred             cCcccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhccc
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      ..++.|..|++.|. ..+|..|++ |.++++|.|+.                    |+++|. .+.|..|+++||
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--------------------C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEF--------------------CEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSS--------------------SSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCC--------------------CcchhCCHHHHHHHHHHhc
Confidence            45789999999997 488999997 77888887775                    556677 788888888876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=6.1e-08  Score=74.59  Aligned_cols=49  Identities=29%  Similarity=0.520  Sum_probs=38.4

Q ss_pred             cccCcccccccCcccccchHHhHhhhccCceeecc-ccccCccccc-ccccCc
Q 010753          406 IEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQ-HAGCGMVLRT-EEARDH  456 (502)
Q Consensus       406 ~~~~~~~C~nC~k~~~~~~l~lHe~~C~rn~~~C~-~~~Cgk~F~k-~~l~~H  456 (502)
                      -...++.|..|++.|...+|..|++.+++++|.|+ .  ||+.|.. +.|..|
T Consensus         6 C~~~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~--C~k~f~~~~~L~~H   56 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQ--CGVGTVAREDLPGH   56 (66)
T ss_dssp             CCCCEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTC--CSCCEEETTTHHHH
T ss_pred             CCCCCeeccccCCccCHHHHHHHHHHcCCcCccCCcc--cCcccccHHHHHHH
Confidence            35678999999999998899999977999999888 7  6665544 444444

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=3.9e-08  Score=81.75  Aligned_cols=53  Identities=13%  Similarity=0.376  Sum_probs=34.3

Q ss_pred             cCcccccccCcccc-c-chHHhHhh-hcc-CceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          408 MDTVQCKNCKRFIP-S-RSIVLHEA-YCS-RHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~-~~l~lHe~-~C~-rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      .++|.|..|++.|. . .+|..|++ |.+ +++                    |.|+.|++.|. ++.|..|+++||.
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~--------------------~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA--------------------LKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH--------------------HSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC--------------------EECCCCCCccCCHHHHHHHHHHHcC
Confidence            34455555555554 2 55555554 333 444                    45667888898 9999999999876

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.42  E-value=1.4e-07  Score=73.01  Aligned_cols=54  Identities=24%  Similarity=0.554  Sum_probs=44.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      ...++.|..|++.|. ..+|..|++ |.++++|.|+.                    |++.|. .+.|..|+++||.
T Consensus         6 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--------------------C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNY--------------------CSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSS--------------------SSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCC--------------------CCCccCCHHHHHHHHHHHhC
Confidence            567899999999998 589999997 77888877774                    567777 8899999999775

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.41  E-value=1.3e-07  Score=80.96  Aligned_cols=62  Identities=16%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             cccCcccccccCcccc-cchHHhHhh--h---ccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHh-hhc
Q 010753          406 IEMDTVQCKNCKRFIP-SRSIVLHEA--Y---CSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKH-MKV  477 (502)
Q Consensus       406 ~~~~~~~C~nC~k~~~-~~~l~lHe~--~---C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH-~~i  477 (502)
                      ..+++|.|..|++.|. +.+|..|++  |   .++++|.|+.                    ||++|. ++.|..| +++
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~--------------------Cgk~F~~~~~L~~H~~r~   73 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVE--------------------CNFLTKRYDALSEHNLKY   73 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETT--------------------TTEEESSTHHHHTHHHHT
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCC--------------------CCcccCCHHHHHHHHHHh
Confidence            4678899999999998 599999985  5   4578887775                    557777 8899999 788


Q ss_pred             ccc--eeeec-CC
Q 010753          478 FHE--QCSCP-CG  487 (502)
Q Consensus       478 ~Ht--p~~C~-Cg  487 (502)
                      |..  ||.|. |.
T Consensus        74 Htgekpy~C~~~~   86 (102)
T 2ghf_A           74 HPGEENFKLTMVK   86 (102)
T ss_dssp             STTCCCEEEEECC
T ss_pred             cCCCCCeeCCccc
Confidence            443  99998 54

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.41  E-value=6.8e-08  Score=74.97  Aligned_cols=39  Identities=28%  Similarity=0.744  Sum_probs=33.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc---eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE---QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht---p~~C~-Cg~~f~~~~~~  496 (502)
                      |.|++||++|. .+.|..|+++ |+   ||.|+ ||++|.+.+.+
T Consensus         5 y~C~~C~k~F~~~~~L~~H~~~-Ht~ekp~~C~~C~k~F~~~~~L   48 (60)
T 4gzn_C            5 FFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEV   48 (60)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH-HHTCCCEECTTTCCEESSHHHH
T ss_pred             ccCCCCCCEeCCHHHHHHHHHH-hCCCcCeECCCCCCCcCCHHHH
Confidence            45556788888 9999999999 64   99999 99999987654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.40  E-value=8.4e-08  Score=80.40  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=18.1

Q ss_pred             ccCccCCCccC-hhhHHHh-hhcccc
Q 010753          457 VHCDKCGQGLQ-RREMEKH-MKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH-~~i~Ht  480 (502)
                      |.|++||++|. ++.|..| +++ |+
T Consensus        63 ~~C~~Cgk~F~~~~~L~~H~~~~-H~   87 (96)
T 2ctd_A           63 FTCHHCGKQLRSLAGMKYHVMAN-HN   87 (96)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHH-TC
T ss_pred             eECCCCCCeeCCHHHHHHHhHHh-cC
Confidence            45667888888 8999999 887 55

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.36  E-value=2.5e-07  Score=68.17  Aligned_cols=51  Identities=18%  Similarity=0.321  Sum_probs=41.1

Q ss_pred             cccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      ++.|..|++.|. ...|..|++ |.++++|.|+.                    ||++|. .+.|..|+++||.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--------------------C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTY--------------------CNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSS--------------------SSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCC--------------------CCchhcCHHHHHHHHHHhcc
Confidence            478999999998 488999997 77888877774                    556777 7888899888653

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.34  E-value=1.7e-07  Score=74.48  Aligned_cols=38  Identities=13%  Similarity=0.324  Sum_probs=33.5

Q ss_pred             CcccccccCcccc-cchHHhHhh-hccCceeeccccccCccc
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVL  448 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F  448 (502)
                      .++.|..|++.|. ...|..|++ |.+++++.|..  ||..|
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~--~~~~~   85 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGEN--SGPSS   85 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCC--CCCCC
T ss_pred             cceECCCCCChhCCHHHHHHHHHHccCCCCcccCC--CCCCC
Confidence            6799999999997 599999998 77899999998  88765

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.33  E-value=8.9e-08  Score=72.92  Aligned_cols=54  Identities=22%  Similarity=0.429  Sum_probs=41.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh--h-ccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA--Y-CSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~--~-C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      ++.++.|..|++.|. ..+|..|.+  | .++++|.|+                    .||++|. .+.|..|++++|.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~--------------------~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCP--------------------FCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECT--------------------TTCCEESCHHHHHHHHHHHTC
T ss_pred             CCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECC--------------------CCCCccCCHHHHHHHHHHHcC
Confidence            457889999999997 488888986  3 367777666                    4567777 7888888888764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.33  E-value=9.7e-08  Score=75.35  Aligned_cols=58  Identities=21%  Similarity=0.592  Sum_probs=49.6

Q ss_pred             eeec--cccccCccccc-ccccCc---------ccCcc--CCCccC-hhhHHHhhhcccceeeec----CCccccccccc
Q 010753          436 SVAC--QHAGCGMVLRT-EEARDH---------VHCDK--CGQGLQ-RREMEKHMKVFHEQCSCP----CGVVLENAAMV  496 (502)
Q Consensus       436 ~~~C--~~~~Cgk~F~k-~~l~~H---------~hC~~--Cgk~f~-~s~l~kH~~i~Htp~~C~----Cg~~f~~~~~~  496 (502)
                      ||.|  +.  ||+.|.. ..|..|         |.|+.  |+++|. .+.|..|+++|+. |.|.    |++.|...+.+
T Consensus         1 p~~C~~~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFEN--CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTT--CCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCC--CCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-CCCCCCCCCCCccCCHHHH
Confidence            5899  87  9999998 888777         68988  999999 9999999999555 8884    99999876543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.32  E-value=3e-07  Score=76.19  Aligned_cols=40  Identities=20%  Similarity=0.620  Sum_probs=35.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      +.|++||++|. ++.|..|+++||.  ||.|. |+++|.++..+
T Consensus        29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L   72 (85)
T 2lv2_A           29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGL   72 (85)
T ss_dssp             EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHH
T ss_pred             EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHH
Confidence            56888999999 9999999999765  99999 99999987654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.31  E-value=3.6e-08  Score=84.96  Aligned_cols=88  Identities=8%  Similarity=0.124  Sum_probs=63.5

Q ss_pred             ccCcccccccC--ccccc-chHHhHhhhccCceeeccccccCcccc-----c--ccccCc--------ccCccCCCccC-
Q 010753          407 EMDTVQCKNCK--RFIPS-RSIVLHEAYCSRHSVACQHAGCGMVLR-----T--EEARDH--------VHCDKCGQGLQ-  467 (502)
Q Consensus       407 ~~~~~~C~nC~--k~~~~-~~l~lHe~~C~rn~~~C~~~~Cgk~F~-----k--~~l~~H--------~hC~~Cgk~f~-  467 (502)
                      +.+.|.|..++  ..|.. ..+..|......+.+.|+.  |++.|.     .  ..|..|        |.|+.||++|. 
T Consensus         9 ~~k~~~~~~k~~~~~~s~ee~~~~~~l~~~~~~~~c~~--~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~C~~C~k~f~~   86 (129)
T 2wbt_A            9 GSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAI--VKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSS   86 (129)
T ss_dssp             TCCGGGGCSSCEEEECCHHHHHHHTTSCHHHHHHHHHH--HHHHHHCGGGTTTHHHHHHHHHHHHHCSEECTTTCCEESS
T ss_pred             cccccccccCCeeeeecHHhhhccccCChhhCcccchh--hhcccCCCcccCCHHHHHHHHHhCCCCCeECCCCCcccCC
Confidence            45667665544  33332 3334455555677788988  988887     2  344444        78999999999 


Q ss_pred             hhhHHHhhhcccceeeec-CCccccccccc
Q 010753          468 RREMEKHMKVFHEQCSCP-CGVVLENAAMV  496 (502)
Q Consensus       468 ~s~l~kH~~i~Htp~~C~-Cg~~f~~~~~~  496 (502)
                      .+.|..|+++|-.||.|+ ||+.|.+.+.+
T Consensus        87 ~~~l~~H~~~H~~~~~C~~C~k~f~~~~~l  116 (129)
T 2wbt_A           87 SVSLKQHIRYTEHTKVCPVCKKEFTSTDSA  116 (129)
T ss_dssp             HHHHHHHHHHTCCCCBCTTTCCBCSSHHHH
T ss_pred             HhHHHHHHHHCCCCCCCCCCCcccCCHHHH
Confidence            999999999952399999 99999987654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.29  E-value=1.3e-07  Score=73.61  Aligned_cols=54  Identities=17%  Similarity=0.442  Sum_probs=43.5

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      .++++.|..|++.|. ...|..|++ |.++++|.|+.                    |++.|. ...|..|+++|+.
T Consensus        11 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~--------------------C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A           11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLE--------------------CGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSS--------------------SCCEESSHHHHHHHHHHHHS
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCC--------------------CCcccCCHHHHHHHHHhcCC
Confidence            567899999999997 488999997 77888877774                    556777 7889999988543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=3.8e-07  Score=74.01  Aligned_cols=65  Identities=15%  Similarity=0.296  Sum_probs=49.8

Q ss_pred             CcccccccCcccc-cchHHhHhh--hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc--ee
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA--YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE--QC  482 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~--~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~  482 (502)
                      ..+.|..|++.|. ..+|..|.+  |.++++..+..  |.          -+.|+.||++|. .+.|..|+++|+.  ||
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~--c~----------~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   91 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV--CY----------WEECPREGKSFKAKYKLVNHIRVHTGEKSG   91 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCC--CC----------CTTCSSTTCCCSSHHHHHHHHHHHHTCCCC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccc--ee----------ccCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            3467999999998 599999996  55665533332  31          157999999999 9999999999554  88


Q ss_pred             eec
Q 010753          483 SCP  485 (502)
Q Consensus       483 ~C~  485 (502)
                      .|+
T Consensus        92 ~C~   94 (95)
T 2ej4_A           92 PSS   94 (95)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            884

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=1.4e-07  Score=72.56  Aligned_cols=46  Identities=24%  Similarity=0.581  Sum_probs=38.9

Q ss_pred             hhccCceeeccccccCcccccccccCc--------ccCc-cCCCccC-hhhHHHhhhc
Q 010753          430 AYCSRHSVACQHAGCGMVLRTEEARDH--------VHCD-KCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       430 ~~C~rn~~~C~~~~Cgk~F~k~~l~~H--------~hC~-~Cgk~f~-~s~l~kH~~i  477 (502)
                      ..|++++|.|+.  ||+.|.++.|..|        |.|+ .||++|. ++.|..|+++
T Consensus         4 ~~C~~~~~~C~~--C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            4 GSSGKRTQPCTY--CTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             SCCCCCEEECSS--SCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             ccCCCCCeeccc--cCCccCHHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHh
Confidence            368999999998  9999987666666        6798 8999888 8889999888

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.23  E-value=7.8e-07  Score=66.34  Aligned_cols=52  Identities=17%  Similarity=0.434  Sum_probs=39.5

Q ss_pred             CcccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      +++.|..|++.|. ..+|..|.+ |.++++|.|+.                    |+++|. .+.|..|++..|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--------------------C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--------------------CNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTT--------------------TCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCC--------------------CCCccCCHHHHHHHHHHHcC
Confidence            3689999999998 589999997 77888887775                    556666 7778888643353

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=2.5e-07  Score=72.82  Aligned_cols=54  Identities=19%  Similarity=0.355  Sum_probs=43.0

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hcc---CceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCS---RHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~---rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      .+++|+|..|++.|. ..+|..|++ |.+   +++|.|+                    .|++.|. .+.|..|++.+|+
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~--------------------~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCE--------------------FCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECT--------------------TTCCEESSHHHHHHHHHHTST
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCC--------------------CCCchhCCHHHHHHHHHHhCC
Confidence            467899999999997 588999987 665   6777666                    4667777 8889999877676

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.15  E-value=8.4e-07  Score=66.16  Aligned_cols=40  Identities=13%  Similarity=0.561  Sum_probs=35.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|+ |++.|.+.+.+
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   46 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLL   46 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHH
T ss_pred             CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHH
Confidence            67889999999 9999999999654  99999 99999987654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.15  E-value=4.4e-07  Score=70.39  Aligned_cols=51  Identities=18%  Similarity=0.478  Sum_probs=40.1

Q ss_pred             ccCccccc--ccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhc
Q 010753          407 EMDTVQCK--NCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       407 ~~~~~~C~--nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      ..+++.|.  .|++.|. +..|..|++ |.++++|.|+.                    ||++|. .+.|..|+++
T Consensus        16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~--------------------C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--------------------CMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTT--------------------TCCEESCHHHHHHHHTT
T ss_pred             CCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCC--------------------CCchhCCHHHHHHHHHh
Confidence            56789996  6999997 488999987 77888877774                    556666 7788888887

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.14  E-value=8.7e-07  Score=65.26  Aligned_cols=40  Identities=18%  Similarity=0.593  Sum_probs=35.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |.|+.||+.|. .+.|..|+++|+.  ||.|+ |++.|...+.+
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   45 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNL   45 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHH
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHH
Confidence            67999999999 9999999999664  99999 99999887654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.12  E-value=8.4e-07  Score=65.33  Aligned_cols=40  Identities=15%  Similarity=0.452  Sum_probs=34.3

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |.|+.||+.|. .+.|..|+++|+.  ||.|+ |++.|.....+
T Consensus         5 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   48 (57)
T 3uk3_C            5 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSL   48 (57)
T ss_dssp             CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHH
T ss_pred             ccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHH
Confidence            67888999999 9999999999654  99999 99999886543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.07  E-value=9.1e-07  Score=68.80  Aligned_cols=23  Identities=13%  Similarity=0.473  Sum_probs=12.3

Q ss_pred             cCcccccccCcccc-cchHHhHhh
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~  430 (502)
                      ..+|.|..|++.|. ...|..|++
T Consensus        40 ~~~~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           40 EKPYKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            34555555555554 255555554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.07  E-value=1.3e-06  Score=64.66  Aligned_cols=37  Identities=22%  Similarity=0.495  Sum_probs=30.6

Q ss_pred             ccCccCCCccC-hhhHHHhhh-cccc--eeeec-CCcccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMK-VFHE--QCSCP-CGVVLENA  493 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~-i~Ht--p~~C~-Cg~~f~~~  493 (502)
                      |.|+.|++.|. .+.|..|++ +|+.  ||.|. |++.|.++
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A           13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            56667888888 899999997 7543  99999 99999863

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=1.1e-06  Score=70.51  Aligned_cols=49  Identities=20%  Similarity=0.541  Sum_probs=41.9

Q ss_pred             ccCcccccccCcccccchHHhHhhhccCceeeccccccCcccccccccCcc
Q 010753          407 EMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHV  457 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H~  457 (502)
                      ...++.|..|++.|....|..|+.+|++++|.|+.  ||+.|.+.+|..|.
T Consensus        14 ~~r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H~   62 (75)
T 2d9k_A           14 PLRLAVCQHCDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTHP   62 (75)
T ss_dssp             CCCCEECSSSCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTHH
T ss_pred             CCcccCCcccChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHHH
Confidence            46788999999999999999999999999999998  88887777777773

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=3e-07  Score=73.74  Aligned_cols=54  Identities=28%  Similarity=0.615  Sum_probs=39.2

Q ss_pred             cchHHhHhh-hccCceeeccccccCcccccccccCc--------ccCccCCCccChhhHHHhhhc
Q 010753          422 SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDH--------VHCDKCGQGLQRREMEKHMKV  477 (502)
Q Consensus       422 ~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H--------~hC~~Cgk~f~~s~l~kH~~i  477 (502)
                      +..|..|+. +|..++|.|+.  |++.|...+|..|        +.|+.||+.|....|..|+++
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~--C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~~~~l~~H~~~   64 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQH--CDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEV   64 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSS--SCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTGGGTHHHH
T ss_pred             chHHHhhCcccCCCcccCCcc--cChHhhHHHHHHHHhHcCCCceEcccCCCcCcHHHHHHHHHH
Confidence            356788997 99999999997  8777766666666        456666666656666666666

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.05  E-value=1.4e-06  Score=67.86  Aligned_cols=40  Identities=23%  Similarity=0.641  Sum_probs=34.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|. |++.|.+.+.+
T Consensus        18 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L   61 (74)
T 2lce_A           18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL   61 (74)
T ss_dssp             BCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHH
T ss_pred             eECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHH
Confidence            77888999999 9999999999664  99999 99999987654

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.03  E-value=4.1e-06  Score=64.76  Aligned_cols=55  Identities=16%  Similarity=0.402  Sum_probs=43.8

Q ss_pred             ccccCcccccc--cCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhc
Q 010753          405 SIEMDTVQCKN--CKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       405 ~~~~~~~~C~n--C~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      ......+.|..  |++.|. ..+|..|++ |.++++|.|+.                  +.|++.|. ...|..|+++
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~------------------~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSW------------------KGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCC------------------TTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCC------------------CCCCcccCCHHHHHhHhhc
Confidence            34577899988  999998 599999997 88999998862                  14667777 7788888876

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.02  E-value=9.7e-07  Score=73.87  Aligned_cols=47  Identities=23%  Similarity=0.544  Sum_probs=43.0

Q ss_pred             ccCcccccccCccc-c-cchHHhHhh-hccCceeeccccccCccccc-ccccCc
Q 010753          407 EMDTVQCKNCKRFI-P-SRSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       407 ~~~~~~C~nC~k~~-~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      ..+++.|..|++.| . +.+|..|++ | ++++|.|++  |||.|.. ..|..|
T Consensus        31 ~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~--Cgk~F~~~~~L~~H   81 (96)
T 2ctd_A           31 DKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHH--CGKQLRSLAGMKYH   81 (96)
T ss_dssp             HTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSS--SCCCCSSHHHHHHH
T ss_pred             CCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCC--CCCeeCCHHHHHHH
Confidence            46789999999999 6 699999998 7 999999999  9999998 889988

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.00  E-value=2e-06  Score=66.38  Aligned_cols=40  Identities=13%  Similarity=0.444  Sum_probs=34.1

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |.|+.|++.|. ...|..|+++|+.  ||.|. |++.|.....+
T Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L   53 (70)
T 1x5w_A           10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNL   53 (70)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHH
Confidence            66778888998 9999999999554  99999 99999987654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.00  E-value=3.4e-06  Score=62.32  Aligned_cols=44  Identities=14%  Similarity=0.106  Sum_probs=38.2

Q ss_pred             ccccCcccccccCcccc-cchHHhHhh--hccCceeeccccccCccccc
Q 010753          405 SIEMDTVQCKNCKRFIP-SRSIVLHEA--YCSRHSVACQHAGCGMVLRT  450 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~-~~~l~lHe~--~C~rn~~~C~~~~Cgk~F~k  450 (502)
                      .....++.|..|++.|. ..+|..|++  |.++++|.|+.  ||+.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~--C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS--SCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCC--CCCCCCC
Confidence            34578899999999998 599999974  78999999998  9999974

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=1.3e-06  Score=68.76  Aligned_cols=32  Identities=13%  Similarity=0.152  Sum_probs=24.0

Q ss_pred             cCcccccccCcccc-cchHHhHhh--hccCceeec
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA--YCSRHSVAC  439 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~--~C~rn~~~C  439 (502)
                      ..+|.|..|++.|. +.+|..|.+  |-...+...
T Consensus        36 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A           36 ALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             TCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            57899999999997 488999984  445555443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.93  E-value=3.9e-06  Score=65.88  Aligned_cols=40  Identities=23%  Similarity=0.676  Sum_probs=34.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |.|+.|++.|. ...|..|+++|+.  ||.|+ |++.|.....+
T Consensus        19 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L   62 (77)
T 2cot_A           19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL   62 (77)
T ss_dssp             SBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHH
T ss_pred             EECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHH
Confidence            67888899999 9999999999664  99999 99999987655

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.91  E-value=2.3e-06  Score=64.95  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=12.4

Q ss_pred             ccCceeeccccccCccccc-ccccCc
Q 010753          432 CSRHSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       432 C~rn~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      .++++|.|+.  ||+.|.. ..|..|
T Consensus         6 ~~~k~~~C~~--C~k~f~~~~~l~~H   29 (66)
T 2drp_A            6 EGEHTYRCKV--CSRVYTHISNFCRH   29 (66)
T ss_dssp             EETTEEECTT--TCCEESSHHHHHHH
T ss_pred             CCCcceECCC--CcchhCCHHHHHHH
Confidence            3455555555  5555555 555555

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.87  E-value=6.9e-06  Score=58.92  Aligned_cols=40  Identities=10%  Similarity=0.169  Sum_probs=35.4

Q ss_pred             ccccCcccccccCcccc-cchHHhHhh-hccCceeeccccccCc
Q 010753          405 SIEMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGM  446 (502)
Q Consensus       405 ~~~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk  446 (502)
                      .....++.|..|++.|. ..+|..|++ |.++++|.|+.  |||
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~--C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGP--SSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCC--CCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCC--CCC
Confidence            34678899999999998 599999998 88999999998  986

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=1.7e-06  Score=71.82  Aligned_cols=28  Identities=18%  Similarity=0.498  Sum_probs=14.3

Q ss_pred             CcccccccCcccc-cchHHhHhh-hccCce
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA-YCSRHS  436 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~  436 (502)
                      .+|.|..|++.|. +.+|..|++ |+++++
T Consensus        53 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           53 DALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             HHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3455555555554 355555553 444444

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.82  E-value=4.2e-06  Score=60.06  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=27.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-CCc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGV  488 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~  488 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|+ |+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             eeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            56777888888 8999999999654  99999 986

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=97.81  E-value=4.4e-06  Score=64.61  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=12.1

Q ss_pred             ccCceeeccccccCccccc-ccccCc
Q 010753          432 CSRHSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       432 C~rn~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      .++++|.|+..+||+.|.. ..|..|
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H   40 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRH   40 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHH
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHH
Confidence            3455555541125555555 455555

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.75  E-value=9.2e-06  Score=57.39  Aligned_cols=30  Identities=13%  Similarity=0.439  Sum_probs=24.1

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             eECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            34556778888 8999999999654  99998 7

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=97.75  E-value=8.9e-06  Score=57.35  Aligned_cols=29  Identities=10%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A           14 GCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             ECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445678888 8999999999554  99998 7

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.75  E-value=6.7e-06  Score=64.50  Aligned_cols=28  Identities=11%  Similarity=0.190  Sum_probs=17.3

Q ss_pred             hHhh-hccCceeeccccccCccccc-ccccCc
Q 010753          427 LHEA-YCSRHSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       427 lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      .|++ |.++++|.|+.  ||+.|.. ..|..|
T Consensus         5 ~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H   34 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYI--CHARFTQSGTMKMH   34 (77)
T ss_dssp             CCCCCCSCCCSEECTT--TCCEESCHHHHHHH
T ss_pred             ccccccCCCCCeECCC--cCchhCCHHHHHHH
Confidence            3444 44566666666  6666666 666666

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=9.3e-06  Score=57.36  Aligned_cols=29  Identities=17%  Similarity=0.529  Sum_probs=23.1

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A           14 ECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             eCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            3445678888 8999999999554  99998 7

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=1e-05  Score=57.23  Aligned_cols=29  Identities=17%  Similarity=0.517  Sum_probs=23.2

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A           14 ECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445778888 8999999999554  99998 7

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=97.74  E-value=9.7e-06  Score=57.27  Aligned_cols=29  Identities=17%  Similarity=0.529  Sum_probs=22.9

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A           14 KCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3445677888 8999999999554  99998 7

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.73  E-value=9.4e-06  Score=57.33  Aligned_cols=29  Identities=14%  Similarity=0.502  Sum_probs=23.0

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A           14 KCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            3445678888 8999999999554  99998 7

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=97.73  E-value=1.1e-05  Score=57.01  Aligned_cols=30  Identities=13%  Similarity=0.264  Sum_probs=23.8

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A           13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            34446778888 8999999999554  99998 7

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.72  E-value=7.8e-06  Score=62.38  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=29.5

Q ss_pred             HhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc--eeeec-CCcccccccc
Q 010753          426 VLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAM  495 (502)
Q Consensus       426 ~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~  495 (502)
                      ..|++ |.++++|.|+.  ||                  ++|. .+.|.   ++|+.  ||.|+ ||+.|...+.
T Consensus         3 ~~h~~~H~~~k~~~C~~--C~------------------k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPV--CS------------------STFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCCSSSCCSSSEEECSS--SC------------------CEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             hhHHHHcCCCCCccCCC--CC------------------chhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            34665 66788887775  55                  4555 33443   55332  88888 8888876553

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.2e-05  Score=56.82  Aligned_cols=30  Identities=23%  Similarity=0.593  Sum_probs=24.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A           13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             eeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44556778888 8999999999554  99998 7

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.1e-05  Score=57.05  Aligned_cols=30  Identities=13%  Similarity=0.424  Sum_probs=24.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             BCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             eECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556778888 8999999999554  99998 7

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.71  E-value=9.3e-06  Score=57.22  Aligned_cols=30  Identities=17%  Similarity=0.414  Sum_probs=23.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A           13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             eECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            34446778888 8999999999554  99998 7

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.71  E-value=1.1e-05  Score=56.78  Aligned_cols=30  Identities=13%  Similarity=0.428  Sum_probs=24.1

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A           13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             eeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556778888 8999999999554  99998 7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.71  E-value=9.9e-06  Score=57.10  Aligned_cols=30  Identities=13%  Similarity=0.536  Sum_probs=24.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A           13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             cCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556778888 9999999999654  99998 7

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.70  E-value=1.2e-05  Score=56.83  Aligned_cols=29  Identities=14%  Similarity=0.460  Sum_probs=22.9

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A           14 KCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445678888 8999999999554  99998 7

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=97.70  E-value=1.1e-05  Score=56.78  Aligned_cols=29  Identities=21%  Similarity=0.494  Sum_probs=22.9

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A           14 NCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             ECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3445778888 8999999999554  99998 7

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=1.1e-05  Score=56.97  Aligned_cols=29  Identities=28%  Similarity=0.641  Sum_probs=23.2

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A           14 KCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             cCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4446778888 8999999999554  99998 7

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.70  E-value=1.2e-05  Score=56.82  Aligned_cols=30  Identities=17%  Similarity=0.427  Sum_probs=24.3

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A           13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             cCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44556778888 8999999999554  99998 7

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=9.9e-06  Score=57.21  Aligned_cols=29  Identities=14%  Similarity=0.463  Sum_probs=23.1

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A           14 ECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            3446778888 8999999999554  99998 7

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=1e-05  Score=57.17  Aligned_cols=29  Identities=21%  Similarity=0.540  Sum_probs=22.8

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A           14 KCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445778888 8899999999554  99998 7

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=1.1e-05  Score=56.95  Aligned_cols=30  Identities=17%  Similarity=0.468  Sum_probs=24.1

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A           13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             ccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34556778888 8999999999654  99998 7

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=9.2e-06  Score=57.50  Aligned_cols=29  Identities=17%  Similarity=0.493  Sum_probs=22.9

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A           14 GCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             EccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3445778888 8999999999554  99998 7

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=9.7e-06  Score=56.72  Aligned_cols=30  Identities=13%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A           11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             ccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34446778888 8999999999554  99998 7

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=97.68  E-value=1.1e-05  Score=57.18  Aligned_cols=30  Identities=23%  Similarity=0.551  Sum_probs=23.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A           13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             BCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             cccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556778888 8999999999554  99998 7

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=1.2e-05  Score=56.56  Aligned_cols=29  Identities=21%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A           14 TCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445778888 8899999999554  99998 7

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=97.68  E-value=1.1e-05  Score=57.15  Aligned_cols=30  Identities=17%  Similarity=0.466  Sum_probs=24.1

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A           13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             eECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556778888 8999999999554  99998 7

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=1.3e-05  Score=56.58  Aligned_cols=29  Identities=14%  Similarity=0.484  Sum_probs=23.1

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A           14 ECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445778888 8999999999554  99998 7

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=9.2e-06  Score=57.38  Aligned_cols=29  Identities=17%  Similarity=0.513  Sum_probs=22.7

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A           14 KCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             ECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3445677888 8899999999554  99998 7

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=1.4e-05  Score=56.30  Aligned_cols=29  Identities=21%  Similarity=0.516  Sum_probs=22.9

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||+.|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A           14 VCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             ECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3445677888 8999999999554  99998 7

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=1.2e-05  Score=56.73  Aligned_cols=29  Identities=14%  Similarity=0.474  Sum_probs=22.9

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A           14 KCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             eCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445778888 8899999999554  99998 7

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=1.2e-05  Score=56.83  Aligned_cols=30  Identities=23%  Similarity=0.528  Sum_probs=24.1

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A           13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             cCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556778888 9999999999554  99998 7

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.66  E-value=1.1e-05  Score=57.00  Aligned_cols=29  Identities=14%  Similarity=0.495  Sum_probs=22.8

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A           14 KCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             eCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            3445677888 8899999999554  99998 7

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.66  E-value=1.3e-05  Score=56.63  Aligned_cols=30  Identities=17%  Similarity=0.598  Sum_probs=23.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A           13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             eECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34446778888 8999999999554  99998 7

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.66  E-value=1e-05  Score=57.09  Aligned_cols=29  Identities=14%  Similarity=0.434  Sum_probs=22.9

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A           14 MCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445778888 8999999999554  99998 7

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.66  E-value=1.1e-05  Score=56.95  Aligned_cols=29  Identities=14%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A           14 KCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             EETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             ECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445667888 8999999999554  99998 7

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.66  E-value=9.7e-06  Score=57.13  Aligned_cols=29  Identities=14%  Similarity=0.484  Sum_probs=22.8

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. ++.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A           14 KCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             eCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445677888 8899999999554  99998 7

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.65  E-value=1.4e-05  Score=56.46  Aligned_cols=26  Identities=15%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             cCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        17 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A           17 ECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             TTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5667777 8899999999554  99998 7

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.65  E-value=1.2e-05  Score=56.82  Aligned_cols=29  Identities=14%  Similarity=0.544  Sum_probs=23.1

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A           14 KCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            4446778888 8999999999554  99998 7

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.65  E-value=1.4e-05  Score=56.44  Aligned_cols=29  Identities=24%  Similarity=0.560  Sum_probs=22.7

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A           14 ICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             ECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445678888 8999999999554  99998 7

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.64  E-value=1.4e-05  Score=68.19  Aligned_cols=40  Identities=15%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc---c---eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH---E---QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H---t---p~~C~-Cg~~f~~~~~~  496 (502)
                      |.|+.||++|. ++.|..|++..|   +   ||.|. ||+.|..++.+
T Consensus        19 y~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L   66 (102)
T 2ghf_A           19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL   66 (102)
T ss_dssp             EECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHH
T ss_pred             cCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHH
Confidence            45556778888 899999998435   2   99999 99999886643

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.64  E-value=1.2e-05  Score=56.81  Aligned_cols=28  Identities=29%  Similarity=0.653  Sum_probs=22.1

Q ss_pred             CccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          459 CDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       459 C~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A           15 CEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             ETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            335667787 8899999999554  99998 7

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.63  E-value=1.1e-05  Score=56.95  Aligned_cols=29  Identities=24%  Similarity=0.508  Sum_probs=22.8

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A           14 ICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3445778888 8999999999554  99998 7

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.62  E-value=1.4e-05  Score=56.42  Aligned_cols=29  Identities=14%  Similarity=0.293  Sum_probs=22.8

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|. |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A           14 QCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             EccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445677888 8899999999554  99998 7

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=97.61  E-value=1.9e-05  Score=55.87  Aligned_cols=30  Identities=10%  Similarity=0.356  Sum_probs=23.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||+.|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A           13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34446778888 8999999999554  99998 7

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.61  E-value=1.6e-05  Score=56.06  Aligned_cols=29  Identities=17%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A           14 KCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3446778888 8999999999554  99998 7

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.60  E-value=1.2e-05  Score=56.84  Aligned_cols=28  Identities=14%  Similarity=0.478  Sum_probs=22.0

Q ss_pred             CccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          459 CDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       459 C~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A           15 CNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             ETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            335667787 8899999999554  99998 7

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.59  E-value=2e-05  Score=55.63  Aligned_cols=29  Identities=21%  Similarity=0.520  Sum_probs=22.6

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A           14 RCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445778888 8999999999554  89997 5

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.59  E-value=9.8e-06  Score=61.94  Aligned_cols=48  Identities=10%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             ccCcccccccCccccc-chHHhHhhhccCceeeccccccCccccc-ccccCc---------ccCccC
Q 010753          407 EMDTVQCKNCKRFIPS-RSIVLHEAYCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKC  462 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~~-~~l~lHe~~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~C  462 (502)
                      +..++.|..|++.|.. .+|..      +++|.|+.  ||+.|.. ..|..|         |.|+.|
T Consensus        15 ~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           15 GDRSQKCSKCGIIFIRRSTLSR------RKTPMCEK--CRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSEEECSSSCCEEECCCCCCC------SSSCCCHH--HHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCCCeeCCcccchhCCHHHhCc------CCCCCCCC--CChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4678999999999974 56655      88999999  9999998 888888         567766

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.59  E-value=1.4e-05  Score=56.64  Aligned_cols=30  Identities=13%  Similarity=0.390  Sum_probs=24.1

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A           13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             cCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44556778888 8999999999554  99998 7

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.57  E-value=1.5e-05  Score=56.19  Aligned_cols=31  Identities=26%  Similarity=0.554  Sum_probs=25.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-CC
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CG  487 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg  487 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|+ ||
T Consensus        11 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A           11 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             SEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            44556778888 8999999999554  99999 97

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.57  E-value=2.3e-05  Score=55.25  Aligned_cols=30  Identities=13%  Similarity=0.362  Sum_probs=23.7

Q ss_pred             ccCccCCCccC-hhhHHHhhh-cccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMK-VFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~-i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|++ +|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A           13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             BCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             EECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            34556778888 899999999 8443  99998 7

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.55  E-value=1.9e-05  Score=55.83  Aligned_cols=30  Identities=23%  Similarity=0.540  Sum_probs=23.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A           13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             eECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34446778888 8999999999553  89998 7

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.52  E-value=3.6e-05  Score=58.61  Aligned_cols=44  Identities=14%  Similarity=0.239  Sum_probs=35.3

Q ss_pred             ccCcccccccCccccc-chHHhHhhhccCceeeccccccCccccc-cccc
Q 010753          407 EMDTVQCKNCKRFIPS-RSIVLHEAYCSRHSVACQHAGCGMVLRT-EEAR  454 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~~-~~l~lHe~~C~rn~~~C~~~~Cgk~F~k-~~l~  454 (502)
                      .+.+|.|..|++.|.. ..|.  ..|.++++|.|+.  ||+.|.. ..+.
T Consensus        11 ~~k~~~C~~C~k~F~~~~~l~--~~H~~~k~~~C~~--C~k~f~~~~~~~   56 (62)
T 1vd4_A           11 NRASFKCPVCSSTFTDLEANQ--LFDPMTGTFRCTF--CHTEVEEDESAM   56 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHH--HEETTTTEEBCSS--SCCBCEECTTCS
T ss_pred             CCCCccCCCCCchhccHHHhH--hhcCCCCCEECCC--CCCccccCcccc
Confidence            4678999999999985 4454  4578899999999  9999987 4443

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.51  E-value=4.6e-05  Score=53.57  Aligned_cols=37  Identities=11%  Similarity=0.115  Sum_probs=33.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccccccC
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCG  445 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cg  445 (502)
                      .++++.|..|++.|. +.+|..|++ |.++++|.|+.  ||
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~--cg   45 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS--SG   45 (45)
T ss_dssp             SCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCC--CC
T ss_pred             CCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcC--CC
Confidence            567899999999997 599999998 88999999998  87

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.49  E-value=4e-05  Score=59.75  Aligned_cols=41  Identities=12%  Similarity=0.319  Sum_probs=36.7

Q ss_pred             ccCcccccc--cCcccc-cchHHhHhh-hccCceeeccccccCcccc
Q 010753          407 EMDTVQCKN--CKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLR  449 (502)
Q Consensus       407 ~~~~~~C~n--C~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~  449 (502)
                      ...++.|..  |++.|. +.+|..|++ |.++++|.|+.  ||+.|.
T Consensus        35 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~F~   79 (79)
T 2dlk_A           35 HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF--SGPSSG   79 (79)
T ss_dssp             SCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS--SSCCCC
T ss_pred             CCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCC--CCCCCC
Confidence            467899999  999998 599999998 88999999998  999984

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.48  E-value=3.1e-05  Score=54.68  Aligned_cols=30  Identities=13%  Similarity=0.408  Sum_probs=25.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A           13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             TCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             eeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778889999 9999999999554  99998 7

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.47  E-value=2.9e-05  Score=54.84  Aligned_cols=29  Identities=14%  Similarity=0.548  Sum_probs=22.5

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .|+.|++.|. .+.|..|+++|+.  ||.|+ |
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A           14 KCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             ECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3446778888 8899999999554  89997 5

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.44  E-value=4e-05  Score=54.01  Aligned_cols=30  Identities=13%  Similarity=0.387  Sum_probs=24.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|+ |
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A           13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             eeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45556778888 8999999999554  99998 7

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=97.44  E-value=4.5e-05  Score=52.58  Aligned_cols=28  Identities=18%  Similarity=0.516  Sum_probs=21.6

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A           12 ECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             cCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            3445778888 8899999999554  88884

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.43  E-value=4.6e-05  Score=53.80  Aligned_cols=29  Identities=14%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeecC
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCPC  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~C  486 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A           14 ECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             ECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3445778888 8999999999554  888863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.42  E-value=4.8e-05  Score=53.85  Aligned_cols=26  Identities=15%  Similarity=0.319  Sum_probs=21.9

Q ss_pred             cCCCccC-hhhHHHhhhcccc--eeeec-C
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE--QCSCP-C  486 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-C  486 (502)
                      .||+.|. .+.|..|+++|+.  ||.|. |
T Consensus        19 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           19 GCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            6778888 8999999999554  99998 7

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.37  E-value=6.3e-05  Score=52.98  Aligned_cols=29  Identities=14%  Similarity=0.455  Sum_probs=22.6

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A           13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             eECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            34556778888 8999999999554  88885

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.36  E-value=7.4e-05  Score=60.28  Aligned_cols=40  Identities=18%  Similarity=0.347  Sum_probs=34.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc---e--------eeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE---Q--------CSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht---p--------~~C~-Cg~~f~~~~~~  496 (502)
                      +.|+.|++.|. ...|..|++++|+   |        |.|. |++.|.+...+
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L   78 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL   78 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHH
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHH
Confidence            35999999999 9999999998565   4        8999 99999987655

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.36  E-value=5.7e-05  Score=58.21  Aligned_cols=40  Identities=18%  Similarity=0.472  Sum_probs=33.9

Q ss_pred             ccCcc--CCCccC-hhhHHHhhhcccc--eeee--c-CCccccccccc
Q 010753          457 VHCDK--CGQGLQ-RREMEKHMKVFHE--QCSC--P-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~--Cgk~f~-~s~l~kH~~i~Ht--p~~C--~-Cg~~f~~~~~~  496 (502)
                      |.|++  |++.|. .+.|..|+++|+.  ||.|  . |++.|.....+
T Consensus        18 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l   65 (72)
T 2epa_A           18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL   65 (72)
T ss_dssp             EECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHH
T ss_pred             eeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHH
Confidence            67777  999999 9999999999654  9999  5 99999886544

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=4.5e-05  Score=53.85  Aligned_cols=29  Identities=14%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeecC
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCPC  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~C  486 (502)
                      .|+.|+++|. .+.|..|+++|+.  ||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A           14 KCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             ECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            3345677888 8999999999554  888863

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.34  E-value=6.6e-05  Score=52.86  Aligned_cols=28  Identities=14%  Similarity=0.547  Sum_probs=21.5

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A           14 ECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            3445678888 8999999999554  88885

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.34  E-value=9.2e-05  Score=52.09  Aligned_cols=35  Identities=9%  Similarity=0.286  Sum_probs=31.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytn_A            9 GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCC
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999997

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.34  E-value=0.0001  Score=52.01  Aligned_cols=36  Identities=8%  Similarity=0.194  Sum_probs=32.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecccccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGC  444 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~C  444 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.  |
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~--C   46 (46)
T 2elz_A            9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS--G   46 (46)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC--C
T ss_pred             CCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC--C
Confidence            467899999999998 599999998 88999999997  7

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.33  E-value=6.4e-05  Score=51.66  Aligned_cols=29  Identities=17%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|.
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A           11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             eECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34556778888 8999999999554  88874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.32  E-value=6.7e-05  Score=52.71  Aligned_cols=29  Identities=14%  Similarity=0.516  Sum_probs=22.8

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A           13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             SCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            44556778888 9999999999554  88885

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.32  E-value=7.5e-05  Score=52.57  Aligned_cols=29  Identities=17%  Similarity=0.588  Sum_probs=22.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A           13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            44556778888 8999999999554  88885

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.32  E-value=7.4e-05  Score=52.47  Aligned_cols=28  Identities=14%  Similarity=0.579  Sum_probs=21.5

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A           14 ICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             ECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            3445778888 8999999999554  88885

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=0.00011  Score=51.75  Aligned_cols=35  Identities=17%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +++++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCC
Confidence            467899999999998 599999997 88999999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.31  E-value=0.00011  Score=51.71  Aligned_cols=35  Identities=14%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytt_A            9 GEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS   45 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            567899999999998 599999998 88999999997

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.31  E-value=6.9e-05  Score=51.47  Aligned_cols=28  Identities=25%  Similarity=0.635  Sum_probs=21.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeee
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSC  484 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C  484 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|
T Consensus        12 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             BCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             eeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            34446778888 8899999999554  8877

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=97.31  E-value=0.00011  Score=51.90  Aligned_cols=35  Identities=9%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|+|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ely_A            9 GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCC
T ss_pred             CCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999997

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.31  E-value=7.1e-05  Score=51.94  Aligned_cols=29  Identities=17%  Similarity=0.423  Sum_probs=22.6

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||+.|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A           13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             eECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            34556778888 8999999999554  88884

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.31  E-value=7.4e-05  Score=52.59  Aligned_cols=29  Identities=17%  Similarity=0.443  Sum_probs=22.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||+.|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A           13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             EECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34556778888 8999999999554  88885

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=0.0001  Score=51.78  Aligned_cols=35  Identities=14%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eq4_A            9 GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred             CCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999997

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=6.7e-05  Score=52.07  Aligned_cols=28  Identities=14%  Similarity=0.431  Sum_probs=21.3

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .++|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A           14 ECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             ECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            3445677888 8899999999554  88884

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=97.30  E-value=9.4e-05  Score=51.92  Aligned_cols=35  Identities=9%  Similarity=0.312  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +..++.|..|++.|. +.+|..|++ |.++++|+|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2el4_A            9 GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=6.2e-05  Score=53.11  Aligned_cols=29  Identities=14%  Similarity=0.383  Sum_probs=22.6

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.|+++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A           13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             cCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34556778888 8999999999554  88885

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=5.7e-05  Score=53.21  Aligned_cols=29  Identities=17%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeecC
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCPC  486 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~C  486 (502)
                      .|+.|+++|. .+.|..|+++|+.  ||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en3_A           14 QCKECGMNFSWSCSLFKHLRSHERTDPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHHHHHHHSCCSSCSC
T ss_pred             eCcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3445677888 8899999999554  898863

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=0.00011  Score=51.65  Aligned_cols=35  Identities=9%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A            9 GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999997

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=7.5e-05  Score=52.46  Aligned_cols=28  Identities=14%  Similarity=0.592  Sum_probs=21.7

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A           14 RCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             ECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3445778888 8999999999554  88885

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=9.9e-05  Score=52.04  Aligned_cols=35  Identities=9%  Similarity=0.296  Sum_probs=31.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emf_A            9 GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999998 88999999987

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=8.8e-05  Score=52.32  Aligned_cols=29  Identities=17%  Similarity=0.559  Sum_probs=22.6

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A           13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             BCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            34556778888 8999999999554  88885

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=7.5e-05  Score=52.44  Aligned_cols=28  Identities=11%  Similarity=0.414  Sum_probs=21.5

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.|+++|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A           14 ECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3445778888 8999999999554  88885

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=6.6e-05  Score=52.35  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=20.6

Q ss_pred             CccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          459 CDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       459 C~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A           15 CSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            345667788 8899999999554  88884

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=6.7e-05  Score=52.93  Aligned_cols=27  Identities=15%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             CccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          459 CDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       459 C~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A           15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            335677888 8899999999554  88885

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=97.29  E-value=0.00011  Score=51.84  Aligned_cols=35  Identities=9%  Similarity=0.343  Sum_probs=31.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            567899999999998 599999998 88999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=6.6e-05  Score=52.96  Aligned_cols=30  Identities=20%  Similarity=0.677  Sum_probs=23.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeecC
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCPC  486 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~C  486 (502)
                      |.|+.|+++|. .+.|..|+++|+.  ||.|+.
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A           13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44556778888 8999999999553  898863

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=97.29  E-value=0.00011  Score=51.79  Aligned_cols=35  Identities=9%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSC
T ss_pred             CCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=0.00011  Score=51.67  Aligned_cols=35  Identities=9%  Similarity=0.199  Sum_probs=31.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .++++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epz_A            9 GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 499999998 88999999997

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=97.28  E-value=0.00011  Score=51.77  Aligned_cols=35  Identities=11%  Similarity=0.327  Sum_probs=31.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|+|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999997

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.28  E-value=6.7e-05  Score=52.81  Aligned_cols=28  Identities=14%  Similarity=0.453  Sum_probs=21.7

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A           14 ECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3446778888 8999999999554  88885

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.27  E-value=9.8e-05  Score=52.05  Aligned_cols=35  Identities=14%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +..++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em5_A            9 STKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred             CCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999997

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=8.1e-05  Score=52.38  Aligned_cols=29  Identities=14%  Similarity=0.517  Sum_probs=22.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A           13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             eECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34456778888 8999999999554  88885

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=0.00012  Score=51.44  Aligned_cols=35  Identities=9%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +..++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eop_A            9 GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCC
T ss_pred             CCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=8.7e-05  Score=52.35  Aligned_cols=29  Identities=21%  Similarity=0.542  Sum_probs=22.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A           13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            34556778888 8999999999554  88885

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=6.6e-05  Score=52.86  Aligned_cols=29  Identities=14%  Similarity=0.477  Sum_probs=22.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A           13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             TCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             eECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            44556778888 8999999999554  88875

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=0.00015  Score=51.01  Aligned_cols=35  Identities=11%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. ..+|..|++ |.++++|+|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep0_A            9 GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             TCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCC
T ss_pred             CCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCC
Confidence            567899999999998 499999998 88999999987

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=6.6e-05  Score=52.75  Aligned_cols=28  Identities=18%  Similarity=0.543  Sum_probs=21.3

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A           14 KCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             ECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             eccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            3445678888 8899999999554  88885

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=0.00011  Score=51.76  Aligned_cols=35  Identities=9%  Similarity=0.233  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|.+ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred             CCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999997

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=0.00011  Score=51.67  Aligned_cols=35  Identities=11%  Similarity=0.312  Sum_probs=31.0

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +..++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eml_A            9 GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSC
T ss_pred             CCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=0.00012  Score=51.34  Aligned_cols=35  Identities=9%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +..++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eov_A            9 GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS   45 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCC
T ss_pred             CCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999997

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=7.9e-05  Score=52.68  Aligned_cols=29  Identities=17%  Similarity=0.471  Sum_probs=22.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A           13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             cCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            44556778888 8999999999554  88886

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=0.00013  Score=51.48  Aligned_cols=35  Identities=9%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A            9 GEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             CCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             CCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999997

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=7e-05  Score=52.10  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             CccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          459 CDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       459 C~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        15 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A           15 CCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             ETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            335667888 8899999999554  88884

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=97.25  E-value=0.00012  Score=51.36  Aligned_cols=35  Identities=11%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .++++.|..|++.|. ..+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em9_A            9 GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred             CCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.25  E-value=0.0001  Score=51.88  Aligned_cols=35  Identities=9%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emh_A            9 GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.24  E-value=0.00012  Score=51.50  Aligned_cols=35  Identities=11%  Similarity=0.237  Sum_probs=31.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em7_A            9 GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred             CCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.24  E-value=0.00011  Score=51.68  Aligned_cols=35  Identities=9%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +..++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytk_A            9 GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred             CCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.24  E-value=0.00017  Score=50.74  Aligned_cols=29  Identities=17%  Similarity=0.466  Sum_probs=23.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.|++.|. ++.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A           13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             cCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45556778888 8999999999554  89886

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.24  E-value=0.00012  Score=51.56  Aligned_cols=35  Identities=14%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+++.|..|++.|. +.+|..|++ |.++++|+|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSS   45 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTC
T ss_pred             CCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            457899999999998 599999997 88999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.24  E-value=0.00011  Score=51.51  Aligned_cols=35  Identities=9%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +..++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A            9 GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             CCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999997

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.24  E-value=0.00012  Score=51.58  Aligned_cols=35  Identities=9%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .++++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ene_A            9 GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred             CCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.23  E-value=0.00011  Score=51.79  Aligned_cols=35  Identities=9%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +..++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytg_A            9 GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 589999997 88999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.23  E-value=0.00012  Score=51.51  Aligned_cols=35  Identities=9%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emy_A            9 GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS   45 (46)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSC
T ss_pred             CCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=97.23  E-value=7.4e-05  Score=52.72  Aligned_cols=28  Identities=14%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A           14 ECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3445667888 8899999999554  88885

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=0.00011  Score=51.69  Aligned_cols=35  Identities=9%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .++++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2yu8_A            9 GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS   45 (46)
T ss_dssp             CCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCC
T ss_pred             CCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=0.00014  Score=51.04  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +..++.|..|++.|. ..+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eme_A            9 GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=0.00012  Score=51.34  Aligned_cols=35  Identities=9%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A            9 GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             CCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.22  E-value=0.00012  Score=50.93  Aligned_cols=35  Identities=9%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      +++++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   43 (44)
T 2emx_A            7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS   43 (44)
T ss_dssp             SCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCC
T ss_pred             CCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=0.00012  Score=51.64  Aligned_cols=35  Identities=9%  Similarity=0.151  Sum_probs=31.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em8_A            9 GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS   45 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCC
T ss_pred             CCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            467899999999998 499999998 88999999997

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.22  E-value=9.2e-05  Score=51.06  Aligned_cols=28  Identities=18%  Similarity=0.564  Sum_probs=21.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeee
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSC  484 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C  484 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|
T Consensus        12 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             BCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             EECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            34556778888 8999999999554  7776

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=0.00011  Score=51.69  Aligned_cols=35  Identities=9%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en6_A            9 GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCC
T ss_pred             CCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=0.00011  Score=51.75  Aligned_cols=35  Identities=11%  Similarity=0.185  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. ..+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS   45 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSC
T ss_pred             CCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=0.00012  Score=51.40  Aligned_cols=35  Identities=9%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq0_A            9 GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=0.00012  Score=51.52  Aligned_cols=35  Identities=11%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+++.|..|++.|. +.+|..|++ |.++++|+|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emp_A            9 GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred             CCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=0.00011  Score=51.62  Aligned_cols=35  Identities=11%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emm_A            9 GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSC
T ss_pred             CCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.21  E-value=8.1e-05  Score=52.26  Aligned_cols=28  Identities=18%  Similarity=0.590  Sum_probs=21.3

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A           14 ECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             EETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             ECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3445667888 8899999999554  88885

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.20  E-value=0.00014  Score=51.15  Aligned_cols=35  Identities=9%  Similarity=0.157  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|.+ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.20  E-value=9.5e-05  Score=52.13  Aligned_cols=29  Identities=10%  Similarity=0.419  Sum_probs=22.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.|+++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A           13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             EECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            44556778888 8999999999554  88885

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.20  E-value=6.4e-05  Score=53.05  Aligned_cols=25  Identities=16%  Similarity=0.482  Sum_probs=19.8

Q ss_pred             cCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .||+.|. .+.|..|+++|+.  ||.|+
T Consensus        17 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A           17 VCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             TTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5667777 8899999999554  88885

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.20  E-value=0.00014  Score=51.34  Aligned_cols=35  Identities=11%  Similarity=0.224  Sum_probs=31.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytm_A            9 GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS   45 (46)
T ss_dssp             SCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999997

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.20  E-value=0.00014  Score=51.09  Aligned_cols=35  Identities=9%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+++.|..|++.|. +.+|..|.+ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            9 GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999986

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.20  E-value=7.9e-05  Score=52.32  Aligned_cols=28  Identities=14%  Similarity=0.606  Sum_probs=21.3

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||+.|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A           14 NCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             cCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            3445677888 8899999999553  88885

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.19  E-value=0.00011  Score=51.59  Aligned_cols=35  Identities=9%  Similarity=0.205  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .++++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ysp_A            9 GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS   45 (46)
T ss_dssp             SCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            467899999999998 599999998 88999999987

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=97.19  E-value=0.00011  Score=50.46  Aligned_cols=27  Identities=22%  Similarity=0.565  Sum_probs=20.6

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeee
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSC  484 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C  484 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|
T Consensus        13 ~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           13 LCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             ECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            3445677888 8899999999554  8877

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.19  E-value=0.00011  Score=51.29  Aligned_cols=28  Identities=25%  Similarity=0.486  Sum_probs=21.2

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A           14 ECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             ECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            3445778888 8899999999554  88874

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.19  E-value=0.00013  Score=51.23  Aligned_cols=35  Identities=9%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en1_A            9 GEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCC
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.19  E-value=0.00014  Score=51.08  Aligned_cols=35  Identities=9%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ++.++.|..|++.|. ..+|..|++ |.++++|+|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A            9 GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             CCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             CCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 489999997 88999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.18  E-value=0.00014  Score=51.12  Aligned_cols=35  Identities=9%  Similarity=0.179  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. ..+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2enc_A            9 GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred             CCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.18  E-value=0.00014  Score=51.16  Aligned_cols=35  Identities=9%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytd_A            9 GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSC
T ss_pred             CCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.18  E-value=0.00014  Score=51.10  Aligned_cols=35  Identities=9%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            9 GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             CCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999986

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.12  E-value=0.0001  Score=50.69  Aligned_cols=27  Identities=19%  Similarity=0.500  Sum_probs=20.4

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeee
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSC  484 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C  484 (502)
                      .|+.||++|. .+.|..|+++|+.  ||.|
T Consensus        13 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A           13 KCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             ECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             eCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            3445778888 8899999998543  7877

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.10  E-value=0.00021  Score=49.79  Aligned_cols=35  Identities=17%  Similarity=0.185  Sum_probs=30.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|++
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            7 GNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            467899999999998 599999997 88999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=97.09  E-value=0.00019  Score=52.57  Aligned_cols=43  Identities=14%  Similarity=0.264  Sum_probs=29.8

Q ss_pred             cccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          418 RFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       418 k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.|. ...|..|++ |.++++|.|+                    .||++|. .+.|..|+++|++
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~--------------------~C~k~f~~~~~L~~H~~~H~~   49 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCP--------------------ICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECT--------------------TTCCEESSHHHHHHHHHHHTT
T ss_pred             cccCCCcchhhHHHhcCCCCCccCC--------------------CCCcccCCHHHHHHHHHHhcc
Confidence            4554 366667776 6677777666                    4667777 8889999988543

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.07  E-value=0.00026  Score=49.82  Aligned_cols=35  Identities=11%  Similarity=0.215  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            9 GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999985

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=97.06  E-value=0.00024  Score=56.74  Aligned_cols=54  Identities=24%  Similarity=0.501  Sum_probs=44.0

Q ss_pred             chHHhHhhhccCceeeccccccCcccccccccCc---------ccCccCCCccChhhHHHhhhc
Q 010753          423 RSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDH---------VHCDKCGQGLQRREMEKHMKV  477 (502)
Q Consensus       423 ~~l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H---------~hC~~Cgk~f~~s~l~kH~~i  477 (502)
                      ..|..|+..|...++.|+. +||..+.+.++..|         ..|+.|+..|....|..|...
T Consensus         3 ~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~~~~~~~~l~~H~~~   65 (76)
T 2yuc_A            3 SGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGM   65 (76)
T ss_dssp             CSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHHHHHHTTTS
T ss_pred             hHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCcceECCCCCCccCHHHHHHHHhH
Confidence            4567788889999999964 49999988888888         348889888888888999765

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.06  E-value=0.0002  Score=50.04  Aligned_cols=27  Identities=19%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc--eeee
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE--QCSC  484 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C  484 (502)
                      .|+.||+.|. .+.|..|+++|+.  ||.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A           14 ECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             ECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            3445677888 8899999999554  7776

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=97.06  E-value=0.00023  Score=48.89  Aligned_cols=34  Identities=9%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      ++.++.|..|++.|. +.+|..|++ |.++++|.|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            7 GENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            467899999999998 499999997 8899999985

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.05  E-value=0.00026  Score=49.68  Aligned_cols=35  Identities=11%  Similarity=0.312  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            9 GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.04  E-value=0.00021  Score=48.99  Aligned_cols=28  Identities=18%  Similarity=0.567  Sum_probs=21.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeee
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSC  484 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C  484 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A           11 YECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             EECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             eECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            44556778888 8999999999554  8877

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.03  E-value=0.00022  Score=57.70  Aligned_cols=37  Identities=19%  Similarity=0.410  Sum_probs=27.7

Q ss_pred             hhccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhh-hcccc---eeeec
Q 010753          430 AYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHM-KVFHE---QCSCP  485 (502)
Q Consensus       430 ~~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~-~i~Ht---p~~C~  485 (502)
                      ++.+++||+|++                  +.||++|. .++|..|+ ++ ||   ||.|.
T Consensus        21 ~~sGEKPYkC~~------------------~~CgKaFsr~s~L~~H~rri-HTgEKP~~~~   62 (73)
T 1x3c_A           21 RYSPYRPYRCVH------------------QGCFAAFTIQQNLILHYQAV-HKSDLPAFSA   62 (73)
T ss_dssp             SSCSSCSCBCCS------------------TTCCCBCSSHHHHHHHHHHH-SSSCCCCCCC
T ss_pred             cccCCCCeECCC------------------CCcChhHcCHHHHHHHhhhh-CCCCCCcccc
Confidence            345677776664                  35889999 99999998 57 65   99884

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.02  E-value=0.00029  Score=49.34  Aligned_cols=35  Identities=9%  Similarity=0.257  Sum_probs=30.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|.+ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            9 GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             SCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.02  E-value=0.00011  Score=51.24  Aligned_cols=26  Identities=19%  Similarity=0.432  Sum_probs=19.0

Q ss_pred             ccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          460 DKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       460 ~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      +.||++|. .+.|..|+++|+.  ||.|.
T Consensus        16 ~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A           16 NECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             TTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             cccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34667777 7889999998554  78773

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.01  E-value=0.00026  Score=49.78  Aligned_cols=35  Identities=9%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            9 GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.01  E-value=0.00032  Score=49.26  Aligned_cols=35  Identities=11%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            9 GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.00  E-value=0.00021  Score=49.74  Aligned_cols=29  Identities=14%  Similarity=0.425  Sum_probs=23.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|+
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A           11 FFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             BCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             EECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            56667888898 9999999999554  88874

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.99  E-value=0.00028  Score=49.40  Aligned_cols=35  Identities=9%  Similarity=0.155  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            9 GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            467899999999998 599999997 88999999984

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.99  E-value=0.00028  Score=49.51  Aligned_cols=35  Identities=11%  Similarity=0.263  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            9 GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.99  E-value=0.00028  Score=49.64  Aligned_cols=35  Identities=14%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            9 GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.98  E-value=0.00028  Score=49.68  Aligned_cols=35  Identities=11%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            9 GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 499999997 88999999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.98  E-value=0.00033  Score=49.29  Aligned_cols=35  Identities=11%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            9 GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999998 88999999984

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.97  E-value=0.00026  Score=49.38  Aligned_cols=29  Identities=17%  Similarity=0.358  Sum_probs=23.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A           13 SECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            45667888888 8999999999553  88884

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.97  E-value=0.00032  Score=48.89  Aligned_cols=34  Identities=18%  Similarity=0.400  Sum_probs=30.0

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      ...++.|..|++.|. ..+|..|++ |.++++|.|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            9 AKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            467899999999998 489999997 8899999985

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.96  E-value=0.00029  Score=49.60  Aligned_cols=35  Identities=11%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+++.|..|++.|. ..+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            9 GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999984

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.96  E-value=0.00032  Score=49.25  Aligned_cols=35  Identities=9%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            9 GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.95  E-value=0.00023  Score=50.12  Aligned_cols=28  Identities=14%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc---eeeec
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE---QCSCP  485 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht---p~~C~  485 (502)
                      .|+.||++|. .+.|..|+++|+.   ||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A           14 KCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3445677888 8899999999553   67763

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.95  E-value=0.00034  Score=49.17  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            9 GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999984

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.94  E-value=0.0003  Score=48.64  Aligned_cols=34  Identities=9%  Similarity=0.353  Sum_probs=29.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            467899999999998 499999997 8899999885

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.94  E-value=0.00045  Score=48.64  Aligned_cols=35  Identities=11%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            9 GERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999973

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.94  E-value=0.00033  Score=49.14  Aligned_cols=35  Identities=9%  Similarity=0.247  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            9 GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.94  E-value=0.00031  Score=49.15  Aligned_cols=35  Identities=9%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            9 GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.94  E-value=0.0004  Score=48.83  Aligned_cols=35  Identities=11%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            9 GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 499999997 88999999984

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.94  E-value=0.00026  Score=49.88  Aligned_cols=29  Identities=14%  Similarity=0.379  Sum_probs=23.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|.
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A           13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             cCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            45667888898 8999999999554  88885

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.94  E-value=0.00033  Score=48.43  Aligned_cols=34  Identities=12%  Similarity=0.338  Sum_probs=29.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            467899999999998 599999997 8899999985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.93  E-value=0.0004  Score=48.58  Aligned_cols=34  Identities=15%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      ..+++.|..|++.|. +.+|..|++ |.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            9 GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            567899999999998 499999997 8899999997

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.93  E-value=0.00036  Score=48.96  Aligned_cols=35  Identities=9%  Similarity=0.352  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|+|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            9 GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.92  E-value=0.00038  Score=48.86  Aligned_cols=35  Identities=9%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            9 GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 499999997 88999999984

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.92  E-value=0.00034  Score=49.29  Aligned_cols=35  Identities=14%  Similarity=0.286  Sum_probs=30.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            9 GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=96.92  E-value=0.00032  Score=49.32  Aligned_cols=35  Identities=11%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            9 GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.90  E-value=0.00034  Score=49.01  Aligned_cols=35  Identities=14%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.89  E-value=0.0002  Score=50.16  Aligned_cols=29  Identities=14%  Similarity=0.557  Sum_probs=21.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeeec
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP  485 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~  485 (502)
                      |.|+.|++.|. .+.|..|+++|+.  ||.|+
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A           13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             ccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            34446677888 8899999999554  88874

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.88  E-value=0.00043  Score=47.37  Aligned_cols=34  Identities=15%  Similarity=0.332  Sum_probs=29.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      .++++.|..|++.|. +.+|..|++ |.++++|.|.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            7 GEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            457899999999998 589999997 8899999874

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.88  E-value=0.00037  Score=47.66  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeec
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVAC  439 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C  439 (502)
                      .+.++.|..|++.|. ..+|..|++ |.++++|.|
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            467899999999998 499999997 889999987

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.88  E-value=0.00039  Score=48.69  Aligned_cols=35  Identities=9%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            9 GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.87  E-value=0.00036  Score=49.08  Aligned_cols=35  Identities=9%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            9 GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.87  E-value=0.00036  Score=48.48  Aligned_cols=34  Identities=18%  Similarity=0.419  Sum_probs=29.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            467899999999998 589999997 7889999885

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.87  E-value=0.00036  Score=48.47  Aligned_cols=34  Identities=9%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      ...++.|..|++.|. ..+|..|++ |.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            9 TRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            456899999999998 489999997 8899999885

>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}

Probab=96.86  E-value=0.0042  Score=51.46  Aligned_cols=69  Identities=26%  Similarity=0.319  Sum_probs=53.7

Q ss_pred             CcceEEEeeccCCCCCC-CChHHHHHHHhccCcccccCCEEEEEECCEEEEEEEEEEcCCCceEEEcCceEEecc
Q 010753          185 KGTYAKLQPEGIGFAEL-PNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIV  258 (502)
Q Consensus       185 kGt~vkLqP~~~~f~di-~n~KavLE~~LR~~stLT~Gd~I~I~~~~~~y~l~V~e~~P~~aVsIidTDleVD~~  258 (502)
                      -|+-|.|.|.+.  ..+ .|.-..|-+.|+.. -+++||+|.|..-|..+.|.|..++|.  +++|..|=+|++.
T Consensus        11 ~A~kVvLAP~~~--i~~~~~~~~~lk~~L~gr-PV~~GD~I~i~~~G~~i~F~Vv~t~P~--~V~Vt~~T~I~i~   80 (83)
T 2jv2_A           11 IMSELKLKPLPK--VELPPDFVDVIRIKLQGK-TVRTGDVIGISILGKEVKFKVVQAYPS--PLRVEDRTKITLV   80 (83)
T ss_dssp             CCCEEEEEESSS--CCCCHHHHHHHHHHHTTS-EECTTCEEEEEETTEEEEEEEEEEESS--SEECCTTSEEEEC
T ss_pred             EEEEEEEcCCCc--eecCccHHHHHHHHHCCC-CccCCCEEEEeeCCCEEEEEEEEecCc--cEEECCCcEEEEE
Confidence            377889999952  234 35556666777764 499999999998789999999999997  7788877777763

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.85  E-value=0.00048  Score=48.28  Aligned_cols=35  Identities=11%  Similarity=0.208  Sum_probs=30.5

Q ss_pred             ccCcccccccCcccc-cchHHhHhh--hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA--YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~--~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++  |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            9 GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             CCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            467899999999998 599999986  67899999987

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.84  E-value=0.00036  Score=48.82  Aligned_cols=35  Identities=9%  Similarity=0.209  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            9 GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            467899999999998 599999997 88999999984

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.84  E-value=0.00038  Score=48.97  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=30.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hcc-Cceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCS-RHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~-rn~~~C~~  441 (502)
                      .+.++.|..|++.|. +.+|..|++ |.+ +++|.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            9 KEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467899999999998 599999998 778 89999973

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.83  E-value=0.0035  Score=71.11  Aligned_cols=145  Identities=19%  Similarity=0.177  Sum_probs=100.6

Q ss_pred             CeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEe-eeeeCCCceeccHHHHHhcCCCCC
Q 010753           92 DKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVL-EFTADEGFVGLPPHVWRNLFPSDT  170 (502)
Q Consensus        92 DKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVl-EFsA~EG~v~LP~wm~~~L~~~~~  170 (502)
                      .-|.|.|..+++|-   ++ ++= +-+|.-.              ....+.|-+. .=..+.|.|.|...+.+||++.  
T Consensus        37 ~~~~~~~~~~~~l~---~~-~gd-~v~i~g~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~--   95 (806)
T 3cf2_A           37 SVVSLSQPKMDELQ---LF-RGD-TVLLKGK--------------KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVR--   95 (806)
T ss_dssp             TEEEECHHHHHHTT---CC-SSC-EEEEECG--------------GGCBCCEEEEECTTSBTTBCEECHHHHHTTTCC--
T ss_pred             CEEEECHHHHHHcC---CC-CCC-EEEEEcC--------------CCceEEEEEcCCCCCCCCEEEeCHHHHHhcCCC--
Confidence            35889999999983   31 222 2344432              1122333332 1234669999999999999987  


Q ss_pred             CCCceEEEEEE-ecCCcceEEEeeccCCCC--CCCChHHHHHHHhcc-CcccccCCEEEEEECCEEEEEEEEEEcCCCce
Q 010753          171 PNNSFVEVRYV-RLPKGTYAKLQPEGIGFA--ELPNQKAVLETSLRQ-HATLSQDDVLTVNYGELAYKLKVLELKPSSSV  246 (502)
Q Consensus       171 ~~~~~V~v~~~-~LPkGt~vkLqP~~~~f~--di~n~KavLE~~LR~-~stLT~Gd~I~I~~~~~~y~l~V~e~~P~~aV  246 (502)
                       -++.|+|+-+ .+|.++.|.|.|.+..-.  .-......|...|.+ +-.+++||+|.|.+++....|.|++++|.+.+
T Consensus        96 -~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~~~~  174 (806)
T 3cf2_A           96 -LGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYC  174 (806)
T ss_dssp             -TTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSSSEE
T ss_pred             -CCCEEEEEECCCCCcCCEEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCCCCe
Confidence             5789999987 789999999999865332  223345566666653 67899999999999988899999999998654


Q ss_pred             EE-EcCceEEecc
Q 010753          247 SV-LETDIEVDIV  258 (502)
Q Consensus       247 sI-idTDleVD~~  258 (502)
                      .| -+|.+.+.-.
T Consensus       175 ~v~~~T~i~~~~~  187 (806)
T 3cf2_A          175 IVAPDTVIHCEGE  187 (806)
T ss_dssp             ECCTTSBCCBCSC
T ss_pred             EECCCcEEEEecc
Confidence            43 2355555433

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=96.83  E-value=0.00044  Score=47.32  Aligned_cols=33  Identities=12%  Similarity=0.270  Sum_probs=28.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeec
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVAC  439 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C  439 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|
T Consensus         8 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            8 GETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            457899999999997 589999997 789999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.81  E-value=0.00042  Score=48.04  Aligned_cols=34  Identities=12%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|+|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            9 GENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            467899999999998 489999997 7889999885

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.80  E-value=0.00038  Score=48.81  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      .++++.|..|++.|. ..+|..|++ |.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            467899999999998 599999997 8899999997

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.80  E-value=0.00042  Score=48.47  Aligned_cols=35  Identities=14%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            9 GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 499999997 88999999984

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.80  E-value=0.00038  Score=48.92  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=30.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.+|.|..|++.|. +.+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            9 GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 599999997 88999999973

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.80  E-value=0.0005  Score=47.05  Aligned_cols=33  Identities=12%  Similarity=0.299  Sum_probs=27.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeec
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVAC  439 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C  439 (502)
                      .+.++.|..|++.|. ..+|..|++ |.++++|.|
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            8 GEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             SCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            456789999999997 488889987 778888887

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.79  E-value=0.00044  Score=48.62  Aligned_cols=35  Identities=11%  Similarity=0.163  Sum_probs=30.7

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      .+.++.|..|++.|. ..+|..|++ |.++++|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            467899999999998 489999997 88999999983

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.79  E-value=0.00046  Score=47.43  Aligned_cols=33  Identities=9%  Similarity=0.109  Sum_probs=28.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeec
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVAC  439 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C  439 (502)
                      .+.++.|..|++.|. +.+|..|++ |.++++|.|
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            8 GEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            467899999999998 489999997 788898887

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.73  E-value=0.00011  Score=60.72  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             cCcccccccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ..+|.|..|++.|. ..+|..|++ |.++++|.|..
T Consensus        23 ~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~   58 (88)
T 1x6f_A           23 NSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKR   58 (88)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccch
Confidence            44566666666665 355666655 55556655554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.72  E-value=0.0005  Score=47.14  Aligned_cols=33  Identities=9%  Similarity=0.128  Sum_probs=28.5

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeec
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVAC  439 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C  439 (502)
                      .+.++.|..|++.|. ..+|..|++ |.++++|.|
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            8 GEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            467899999999998 489999997 888999987

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.65  E-value=0.00086  Score=61.29  Aligned_cols=67  Identities=22%  Similarity=0.462  Sum_probs=58.0

Q ss_pred             Cccccc--ccCcccccchHHhHhhhccCceeeccccccCcccccccccCcc---------cCccCCCccChhhHHHhhhc
Q 010753          409 DTVQCK--NCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHV---------HCDKCGQGLQRREMEKHMKV  477 (502)
Q Consensus       409 ~~~~C~--nC~k~~~~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H~---------hC~~Cgk~f~~s~l~kH~~i  477 (502)
                      -.+.|.  .|+..++...+..|+..|.-+++.|+.  |+..+.+.++..|.         .|+.|+..|....|+.|..+
T Consensus        81 l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~--C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~l~~H~~~  158 (170)
T 3hcs_A           81 LMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQN  158 (170)
T ss_dssp             SEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTT--TCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEEGGGHHHHHTT
T ss_pred             cccCCCCCCCCceecHhHHHHHHhcCCceeeECCC--CChHHHHHHHHHHhhhhCCCCCeECCCCCCccCHHHHHhHHHh
Confidence            456684  599999999999999999999999996  99999888888883         48999988889999999887

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=96.65  E-value=0.00026  Score=49.45  Aligned_cols=23  Identities=13%  Similarity=0.322  Sum_probs=13.2

Q ss_pred             ccCcccccccCcccc-cchHHhHh
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHE  429 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe  429 (502)
                      .+++|.|..|+|.|. +.+|..|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            345566666666665 35666665

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.65  E-value=0.001  Score=40.78  Aligned_cols=23  Identities=17%  Similarity=0.608  Sum_probs=20.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .+.|..|+++|+
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            57899999999 999999999954

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=96.63  E-value=0.0007  Score=44.52  Aligned_cols=27  Identities=15%  Similarity=0.436  Sum_probs=22.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eee
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCS  483 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~  483 (502)
                      |.|+.||++|. .++|..|+++|+.  ||.
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            3 FACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            57889999999 9999999999543  553

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.63  E-value=0.00076  Score=47.45  Aligned_cols=35  Identities=11%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             ccCccccc--ccCcccc-cchHHhHhh-hccCceeeccc
Q 010753          407 EMDTVQCK--NCKRFIP-SRSIVLHEA-YCSRHSVACQH  441 (502)
Q Consensus       407 ~~~~~~C~--nC~k~~~-~~~l~lHe~-~C~rn~~~C~~  441 (502)
                      ...++.|.  .|++.|. +.+|..|++ |.++++|+|+.
T Consensus         9 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   47 (48)
T 2ent_A            9 GEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS   47 (48)
T ss_dssp             CCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred             CCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46789998  8999998 599999998 88999999987

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.54  E-value=0.00093  Score=46.91  Aligned_cols=19  Identities=26%  Similarity=0.618  Sum_probs=16.1

Q ss_pred             cCCCccC-hhhHHHhhhcccc
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      .|+++|. ++.|..|+++ |+
T Consensus        16 ~C~k~F~~~~~L~~H~r~-Ht   35 (38)
T 2eln_A           16 GCDYSTPDKYKLQAHLKV-HT   35 (38)
T ss_dssp             SCCCEESCHHHHHHHHHH-HS
T ss_pred             CCCCccCCHHHHHHHHHh-cC
Confidence            4888888 9999999999 54

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.53  E-value=0.00072  Score=46.90  Aligned_cols=34  Identities=9%  Similarity=0.287  Sum_probs=28.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      .+.++.|..|++.|. ..+|..|++ |.++++|.|.
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            9 DSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            457799999999997 588999987 7788998873

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=96.45  E-value=0.0013  Score=43.58  Aligned_cols=22  Identities=18%  Similarity=0.499  Sum_probs=15.7

Q ss_pred             cCccCCCccC-hhhHHHhhhccc
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      .|+.||++|. .+.|..|+++|+
T Consensus        13 ~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A           13 QCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             cCCCCCcccCcHHHHHHHHHHhc
Confidence            3445667777 888899988843

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.43  E-value=0.0014  Score=40.63  Aligned_cols=23  Identities=30%  Similarity=0.787  Sum_probs=19.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .+.|..|+++|+
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            4 YSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             EECSSSCCEESCHHHHHHHHTTSC
T ss_pred             ccCCCCCcccCCHHHHHHHHHhcC
Confidence            56778889998 899999999843

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.41  E-value=0.001  Score=41.09  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=18.6

Q ss_pred             ccCccCCCccC-hhhHHHhhhcc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~  478 (502)
                      |.|+.||++|. .+.|..|+++|
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            4 FSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHC
T ss_pred             ccCCCcChhhCCHHHHHHHHHHc
Confidence            56778889998 89999999883

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.36  E-value=0.001  Score=47.35  Aligned_cols=40  Identities=18%  Similarity=0.341  Sum_probs=26.6

Q ss_pred             ccchHHhHhhhccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcc
Q 010753          421 PSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       421 ~~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~  478 (502)
                      +...+..|..|.++++|.|+.                  +.||++|. .+.|..|+++|
T Consensus         3 ~~~~~~~~~~H~~~k~~~C~~------------------~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A            3 PRGSIDKYVKEMPDKTFECLF------------------PGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             CCSSGGGSCEEETTTEEECCC------------------TTCCCEECSSSSHHHHHHHH
T ss_pred             ChHHHHHHhccCCCCCeECCC------------------CCCCCccCCHHHHHHHHHHc
Confidence            334455555678899988862                  14556666 77888888873

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=96.33  E-value=0.00099  Score=46.43  Aligned_cols=29  Identities=17%  Similarity=0.472  Sum_probs=25.6

Q ss_pred             ccCceeeccccccCccccc-ccccCc--ccCccC
Q 010753          432 CSRHSVACQHAGCGMVLRT-EEARDH--VHCDKC  462 (502)
Q Consensus       432 C~rn~~~C~~~~Cgk~F~k-~~l~~H--~hC~~C  462 (502)
                      -+++||.|++  |||.|.+ +.|..|  |+|++.
T Consensus         4 ~gekp~~C~~--CgK~F~~~s~L~~H~py~C~~r   35 (36)
T 1fv5_A            4 LKPARFMCLP--CGIAFSSPSTLEAHQAYYCSHR   35 (36)
T ss_dssp             SSCCCCEETT--TTEECSCHHHHHHHHHHTSTTC
T ss_pred             CCccCeECCC--CCCccCCHhHccCcCCeECcCC
Confidence            4789999999  9999999 999999  788753

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=96.33  E-value=0.0016  Score=42.77  Aligned_cols=31  Identities=13%  Similarity=0.087  Sum_probs=26.0

Q ss_pred             CcccccccCcccc-cchHHhHhh-hccCceeec
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVAC  439 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C  439 (502)
                      .++.|..|++.|. ..+|..|++ |.++++|.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3688999999997 599999997 888888753

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.32  E-value=0.0016  Score=45.28  Aligned_cols=33  Identities=12%  Similarity=0.321  Sum_probs=27.5

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceeec
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVAC  439 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C  439 (502)
                      .+.++.|..|++.|. ..+|..|++ |.++++|.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            9 GEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            457899999999997 488999987 778888876

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=96.29  E-value=0.0015  Score=40.55  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.|+.||++|. .+.|..|+++||+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             ccCCCCCCccCCHHHHHHHHHHHcc
Confidence            57889999999 8999999999654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=96.26  E-value=0.00099  Score=45.06  Aligned_cols=28  Identities=18%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc--eeee
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE--QCSC  484 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C  484 (502)
                      |.|+.||++|. .+.|..|+++|+.  ||.|
T Consensus         7 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            7 YTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            45667778888 8899999999543  5543

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.26  E-value=0.0015  Score=40.20  Aligned_cols=23  Identities=17%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .+.|..|+++|+
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CcCCCCCcccCCHHHHHHHHHHhc
Confidence            57888999999 899999999854

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=96.19  E-value=0.0015  Score=44.09  Aligned_cols=32  Identities=16%  Similarity=0.165  Sum_probs=26.8

Q ss_pred             cCcccccccCcccc-cchHHhHhh-hccCceeec
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVAC  439 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C  439 (502)
                      +.++.|..|++.|. ..+|..|++ |.++++|.|
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            56789999999997 488999987 778888876

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.18  E-value=0.0012  Score=41.12  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=18.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhcc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~  478 (502)
                      |.|+.||++|. .+.|..|+++|
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            4 YRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             EEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCCCCCCcccCCHHHHHHHHHhc
Confidence            56777888888 88999999883

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=96.17  E-value=0.002  Score=39.85  Aligned_cols=23  Identities=13%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .+.|..|+++|+
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             eECCCCCcccCCHHHHHHHHHHhc
Confidence            67889999999 899999999843

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=96.14  E-value=0.0027  Score=52.11  Aligned_cols=49  Identities=20%  Similarity=0.574  Sum_probs=45.2

Q ss_pred             CcccccccCcccccchHHhHhhhccC-ceeeccccccCcccccccccCcccC
Q 010753          409 DTVQCKNCKRFIPSRSIVLHEAYCSR-HSVACQHAGCGMVLRTEEARDHVHC  459 (502)
Q Consensus       409 ~~~~C~nC~k~~~~~~l~lHe~~C~r-n~~~C~~~~Cgk~F~k~~l~~H~hC  459 (502)
                      =.++|..||-.+.+..+..|...|.. ..+.|-+  |++.|...++..|..|
T Consensus         9 V~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCID--C~~~F~~~~y~~HtsC   58 (79)
T 1wjv_A            9 VFFTCNACGESVKKIQVEKHVSNCRNCECLSCID--CGKDFWGDDYKSHVKC   58 (79)
T ss_dssp             CEEEESSSCCEEETTHHHHHHHHCTTCCEEEETT--TTEEEEGGGTTTCCCC
T ss_pred             eEEEcCCCCCeeecccchhHHhhCCCCCcEEecc--cCCeeCCCCEeCEeee
Confidence            46899999999999999999989977 5899999  9999999999999988

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.10  E-value=0.0025  Score=50.29  Aligned_cols=34  Identities=12%  Similarity=0.242  Sum_probs=26.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc-eeeec-CCccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE-QCSCP-CGVVL  490 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht-p~~C~-Cg~~f  490 (502)
                      |.|++|+++|. .+.|..|+++|+. ...|. |+...
T Consensus        14 y~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~~~~   50 (66)
T 2epp_A           14 LPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPP   50 (66)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCCCCC
T ss_pred             cCCCCCCCccCCHHHHHhhhhhhCCCccccccccCCC
Confidence            66778889999 9999999999554 66777 76543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=96.09  E-value=0.0022  Score=39.77  Aligned_cols=23  Identities=13%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      +.|+.||+.|. .+.|..|+++|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTGGG
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhc
Confidence            56788889998 899999999843

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.08  E-value=0.0022  Score=39.81  Aligned_cols=23  Identities=22%  Similarity=0.654  Sum_probs=19.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .++|..|+++|+
T Consensus         4 ~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            4 YQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             EECTTTCCEESCHHHHHHHHHTTC
T ss_pred             ccCCCCCcccCCHHHHHHHHHHhc
Confidence            56778889998 899999999844

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.02  E-value=0.0011  Score=40.60  Aligned_cols=21  Identities=19%  Similarity=0.746  Sum_probs=16.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      |.|+.||++|. .+.|..|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            56777888888 7888888887

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.02  E-value=0.0022  Score=41.69  Aligned_cols=24  Identities=17%  Similarity=0.414  Sum_probs=18.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.|+.||++|. .+.|..|+++|+.
T Consensus         8 ~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            8 YVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             eECCCCcchhCCHHHHHHHHHHHcC
Confidence            45556778888 8899999988553

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=96.00  E-value=0.00079  Score=49.20  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=27.6

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCceee
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVA  438 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~  438 (502)
                      ...++.|..|++.|. ..+|..|++ |.++++|+
T Consensus        21 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A           21 SEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             SSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             CCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            467899999999998 599999997 88888864

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=95.97  E-value=0.00091  Score=43.54  Aligned_cols=23  Identities=22%  Similarity=0.524  Sum_probs=18.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .++|..|+++|+
T Consensus         3 ~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            3 FACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             SSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHc
Confidence            56778888888 888888888843

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=94.91  E-value=0.0013  Score=41.13  Aligned_cols=23  Identities=17%  Similarity=0.551  Sum_probs=18.1

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .++|..|+++|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            56778888888 888888888843

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=95.82  E-value=0.0036  Score=40.87  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=17.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||+.|. .+.|..|+++|+
T Consensus         8 ~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            8 FVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGGT
T ss_pred             eeCCCCCcccCCHHHHHHHHHHcC
Confidence            44556778888 889999999854

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=94.79  E-value=0.0015  Score=40.75  Aligned_cols=23  Identities=13%  Similarity=0.527  Sum_probs=17.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .+.|..|+++|+
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            4 YVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            56777888888 788888888844

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.79  E-value=0.0036  Score=41.00  Aligned_cols=23  Identities=22%  Similarity=0.616  Sum_probs=18.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.|++.|. .+.|..|+++|+
T Consensus        10 ~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A           10 HLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             eecCcCCCCcCchHHHHHHHHHhc
Confidence            56778888898 899999999843

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.79  E-value=0.003  Score=42.17  Aligned_cols=23  Identities=22%  Similarity=0.520  Sum_probs=17.5

Q ss_pred             ccCc--cCCCccC-hhhHHHhhhccc
Q 010753          457 VHCD--KCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~--~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+  .||++|. .+.|..|+++|+
T Consensus         7 ~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            7 FLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             EECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             eECCCCCCCcccCCHHHHHHHHHHhC
Confidence            3454  5788888 889999999844

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.77  E-value=0.0026  Score=39.19  Aligned_cols=23  Identities=17%  Similarity=0.813  Sum_probs=19.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .+.|..|+++|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCChhHHHHHHHHhc
Confidence            56888999998 899999999843

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.72  E-value=0.0039  Score=51.27  Aligned_cols=63  Identities=16%  Similarity=0.218  Sum_probs=45.3

Q ss_pred             chHHhHhh-hccCceeeccccccCccccc-ccccCc---------ccCccCCCccChhhHHHhhhcccceeeec-CCccc
Q 010753          423 RSIVLHEA-YCSRHSVACQHAGCGMVLRT-EEARDH---------VHCDKCGQGLQRREMEKHMKVFHEQCSCP-CGVVL  490 (502)
Q Consensus       423 ~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k-~~l~~H---------~hC~~Cgk~f~~s~l~kH~~i~Htp~~C~-Cg~~f  490 (502)
                      ..+.+|.. |.++++|.|+.  ||+.|.. ..|..|         |.|..|.   ....|..|++++.+.+..- ++..|
T Consensus        11 ~~~~~~~~~H~~~kpy~C~~--C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   85 (88)
T 1x6f_A           11 DFIILGNGPRLQNSTYQCKH--CDSKLQSTAELTSHLNIHNEEFQKRAKRQE---RRKQLLSKQKYADGAFADFKQESGP   85 (88)
T ss_dssp             CCCCCCCCSCCCCSCEECSS--SCCEESSHHHHHHHHHHHHHHHHHHCCCCS---CCCCCCCCCCCCCCSSSCCCCCCCC
T ss_pred             ceeeccccccCCCCCCcCCC--CCCEeCCHHHHHHHHHHhCCCCCcccchhh---hHHHHHhhhcccccccccccccCCC
Confidence            33455554 77899999999  9999998 888888         5676652   4778889999955555444 44444

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.67  E-value=0.0046  Score=56.40  Aligned_cols=84  Identities=18%  Similarity=0.357  Sum_probs=60.6

Q ss_pred             cccccCcccccch----HHhHhhhccCceeeccccccCcccccccccCc--------ccCccCCCccChhhHHHhhhccc
Q 010753          412 QCKNCKRFIPSRS----IVLHEAYCSRHSVACQHAGCGMVLRTEEARDH--------VHCDKCGQGLQRREMEKHMKVFH  479 (502)
Q Consensus       412 ~C~nC~k~~~~~~----l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H--------~hC~~Cgk~f~~s~l~kH~~i~H  479 (502)
                      .|+.|.+.+....    ..+-. .-..-.+.|+..||+..+...++..|        ..|+.|+..+.+..|..|....-
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~-~i~~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~~r~~l~~H~~~~C  133 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKR-EILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDC  133 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHH-HHHTSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEEEGGGHHHHHHHTC
T ss_pred             CCCCCccCcchhhhhhhHHHHH-HHhhcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHHHHHHHHHHhhhhC
Confidence            7899988886421    11111 12245678876689999988888888        46889987777999999985322


Q ss_pred             --ceeeec-CCccccccccc
Q 010753          480 --EQCSCP-CGVVLENAAMV  496 (502)
Q Consensus       480 --tp~~C~-Cg~~f~~~~~~  496 (502)
                        .+..|+ |+..|....+.
T Consensus       134 ~~r~~~C~~C~~~~~~~~l~  153 (170)
T 3hcs_A          134 PRRQVSCDNCAASMAFEDKE  153 (170)
T ss_dssp             TTCEEECTTTCCEEEGGGHH
T ss_pred             CCCCeECCCCCCccCHHHHH
Confidence              288899 99999887776

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.62  E-value=0.0035  Score=41.27  Aligned_cols=23  Identities=13%  Similarity=0.686  Sum_probs=17.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.|++.|. .+.|..|+++|+
T Consensus        10 ~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A           10 FTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHC
T ss_pred             EECCCCCceeCCHHHHHHHHHHhC
Confidence            55667778888 889999999843

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=95.58  E-value=0.0062  Score=38.63  Aligned_cols=23  Identities=22%  Similarity=0.667  Sum_probs=19.4

Q ss_pred             ccCc--cCCCccC-hhhHHHhhhccc
Q 010753          457 VHCD--KCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~--~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+  .||++|. .+.|..|+++|+
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             cCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            5676  8999999 999999999943

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.55  E-value=0.0049  Score=40.53  Aligned_cols=22  Identities=23%  Similarity=0.603  Sum_probs=16.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~  478 (502)
                      |.|+.|+++|. .+.|..|+++|
T Consensus        10 ~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A           10 YDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTT
T ss_pred             eECCCCCCccCCHHHHHHHHHHh
Confidence            44556777888 88899999884

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.54  E-value=0.0039  Score=40.83  Aligned_cols=23  Identities=13%  Similarity=0.502  Sum_probs=17.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.|+++|. .+.|..|+++|+
T Consensus        10 ~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A           10 YKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCcccCCHHHHHHHHHHcc
Confidence            45556778888 888999998843

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=95.52  E-value=0.0065  Score=37.84  Aligned_cols=22  Identities=23%  Similarity=0.593  Sum_probs=18.6

Q ss_pred             ccCccCCCccC-hhhHHHh-hhcc
Q 010753          457 VHCDKCGQGLQ-RREMEKH-MKVF  478 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH-~~i~  478 (502)
                      +.|+.||++|. .+.|..| +++|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~~H   26 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRHAQKIH   26 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHHHTTTS
T ss_pred             cCCcccCcccCChHHHHHHHHHHc
Confidence            57888999999 8999999 6773

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.50  E-value=0.003  Score=41.76  Aligned_cols=23  Identities=26%  Similarity=0.618  Sum_probs=17.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.||++|. .++|..|+++|+
T Consensus        10 ~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A           10 YSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHHC
T ss_pred             cCCCCCCCccCCHHHHHHHHHHHc
Confidence            34556777788 888999998854

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.48  E-value=0.0058  Score=49.46  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             cccCcccccc--cCcccc-cchHHhHh-h-hccCceeeccc
Q 010753          406 IEMDTVQCKN--CKRFIP-SRSIVLHE-A-YCSRHSVACQH  441 (502)
Q Consensus       406 ~~~~~~~C~n--C~k~~~-~~~l~lHe-~-~C~rn~~~C~~  441 (502)
                      ..+++|.|..  |+|.|. +.+|..|+ + |.+++||.|-+
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            3579999975  999998 59999997 4 99999999975

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=95.43  E-value=0.0077  Score=38.39  Aligned_cols=23  Identities=22%  Similarity=0.612  Sum_probs=19.5

Q ss_pred             ccCc--cCCCccC-hhhHHHhhhccc
Q 010753          457 VHCD--KCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~--~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+  .||++|. .+.|..|+++|+
T Consensus         4 ~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            4 YSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            5677  7999999 999999999943

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=95.38  E-value=0.0023  Score=41.51  Aligned_cols=28  Identities=14%  Similarity=0.237  Sum_probs=17.1

Q ss_pred             cccccccCcccc-cchHHhHhh-hccCcee
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCSRHSV  437 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~  437 (502)
                      ++.|..|++.|. +.+|..|++ |.++++|
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            456777777765 366666665 5555543

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.36  E-value=0.0055  Score=40.29  Aligned_cols=23  Identities=17%  Similarity=0.524  Sum_probs=17.0

Q ss_pred             ccCccCCCccC-hhhHHHhhhccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~H  479 (502)
                      |.|+.|++.|. .+.|..|+++|+
T Consensus        10 ~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A           10 FKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             EECSSSSCEESCHHHHHHHHHHSS
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhc
Confidence            44556777887 888999988843

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=95.17  E-value=0.0054  Score=37.79  Aligned_cols=22  Identities=32%  Similarity=0.910  Sum_probs=18.6

Q ss_pred             ccCc--cCCCccC-hhhHHHhhhcc
Q 010753          457 VHCD--KCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       457 ~hC~--~Cgk~f~-~s~l~kH~~i~  478 (502)
                      |.|+  .||++|. .+.|..|+++|
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCcCCcCcCccCCHHHHHHHHHHh
Confidence            5677  8889998 89999999984

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=95.17  E-value=0.008  Score=40.10  Aligned_cols=18  Identities=17%  Similarity=0.479  Sum_probs=14.9

Q ss_pred             cCCCccC-hhhHHHhhhcc
Q 010753          461 KCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~  478 (502)
                      .||++|. .+.|..|+++|
T Consensus        15 ~C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A           15 GCGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             TCCCEESCHHHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHhc
Confidence            4778888 88999999883

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.07  E-value=0.0059  Score=40.38  Aligned_cols=22  Identities=14%  Similarity=0.484  Sum_probs=16.9

Q ss_pred             ccCccCCCccC-h-hhHHHhhhcc
Q 010753          457 VHCDKCGQGLQ-R-REMEKHMKVF  478 (502)
Q Consensus       457 ~hC~~Cgk~f~-~-s~l~kH~~i~  478 (502)
                      |.|+.|+++|. . +.|..|+++|
T Consensus        10 ~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A           10 MKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             EECSSSSCEECSSCHHHHHHHHHH
T ss_pred             eECCCCChhhccCHHHHHHHHHhc
Confidence            44556778888 7 8999999984

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.05  E-value=0.0096  Score=38.51  Aligned_cols=28  Identities=14%  Similarity=0.110  Sum_probs=18.9

Q ss_pred             cCcccccccCcccc-cchHHhHhh-hccCc
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      ..++.|..|++.|. +.+|..|++ |.+++
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            5 SSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            45677777777776 377777776 54443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=94.94  E-value=0.011  Score=36.48  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=18.2

Q ss_pred             CcccccccCcccc-cchHHhHhh-hcc
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA-YCS  433 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~-~C~  433 (502)
                      .++.|..|++.|. ..+|..|++ |.+
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            4678888888887 477888876 443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.90  E-value=0.0072  Score=40.34  Aligned_cols=19  Identities=16%  Similarity=0.585  Sum_probs=13.5

Q ss_pred             CccCCCccC-hhhHHHh-hhc
Q 010753          459 CDKCGQGLQ-RREMEKH-MKV  477 (502)
Q Consensus       459 C~~Cgk~f~-~s~l~kH-~~i  477 (502)
                      |+.||++|. ++.|..| +++
T Consensus        12 C~~C~k~f~~~~~L~~H~~~~   32 (37)
T 2elm_A           12 CSQCHYSSITKNCLKRHVIQK   32 (37)
T ss_dssp             CSSSSCEEECHHHHHHHHHHH
T ss_pred             CCCCCcccCCHHHHHHHHHHH
Confidence            335667777 7788888 777

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.90  E-value=0.01  Score=39.08  Aligned_cols=29  Identities=17%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      .+.++.|..|++.|. +.+|..|.+ |.+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            6 SGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            356788888888887 477888876 55554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=94.79  E-value=0.01  Score=42.42  Aligned_cols=23  Identities=26%  Similarity=0.560  Sum_probs=16.8

Q ss_pred             ccCccCCCccC-hhhHHHhhh-ccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMK-VFH  479 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~-i~H  479 (502)
                      |.|+.||++|. .+.|..|++ +|.
T Consensus         8 ~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            8 YACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             EECCCcCcccCCHHHHHHHhhhhcC
Confidence            34446777888 889999999 743

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=94.77  E-value=0.014  Score=35.96  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             cccccccCcccc-cchHHhHhh-hccCc
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      ++.|..|++.|. ..+|..|++ |.+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            578999999997 488888987 55543

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=94.68  E-value=0.015  Score=37.82  Aligned_cols=28  Identities=11%  Similarity=0.146  Sum_probs=18.0

Q ss_pred             cCcccccccCcccc-cchHHhHhh-hccCc
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      +.++.|..|++.|. ..+|..|++ |.+++
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            45677777777776 467777765 44443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.62  E-value=0.018  Score=37.74  Aligned_cols=28  Identities=14%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccC
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      ...++.|..|++.|. ..+|..|++ |.++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            457788999999997 488888887 5443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=94.52  E-value=0.016  Score=35.61  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=16.2

Q ss_pred             cccccccCcccc-cchHHhHhh
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~  430 (502)
                      ++.|..|++.|. ..+|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            577888888886 477888876

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=94.47  E-value=0.018  Score=35.27  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=18.4

Q ss_pred             cccccccCcccc-cchHHhHhh-hcc
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCS  433 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~  433 (502)
                      ++.|..|++.|. ..+|..|++ |.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            578888998887 488888886 444

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.42  E-value=0.0064  Score=40.60  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=20.2

Q ss_pred             hccCceeeccccccCccccc-ccccCc
Q 010753          431 YCSRHSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      |.++++|.|+.  ||+.|.. +.|..|
T Consensus         4 H~~~k~~~C~~--C~k~f~~~~~L~~H   28 (37)
T 2elm_A            4 GSSGHLYYCSQ--CHYSSITKNCLKRH   28 (37)
T ss_dssp             SSSSCEEECSS--SSCEEECHHHHHHH
T ss_pred             cCCCcCeECCC--CCcccCCHHHHHHH
Confidence            55689999998  9999988 778777

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=94.18  E-value=0.022  Score=34.67  Aligned_cols=24  Identities=13%  Similarity=0.313  Sum_probs=18.2

Q ss_pred             cccccccCcccc-cchHHhHhh-hcc
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCS  433 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~  433 (502)
                      ++.|..|++.|. ..+|..|++ |.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            578888988887 478888886 444

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.18  E-value=0.023  Score=36.96  Aligned_cols=28  Identities=14%  Similarity=0.237  Sum_probs=21.2

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccC
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      ...++.|..|++.|. ..+|..|++ |.++
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            456788999999997 488888887 5443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=94.12  E-value=0.019  Score=35.07  Aligned_cols=25  Identities=16%  Similarity=0.433  Sum_probs=18.5

Q ss_pred             cccccccCcccc-cchHHhHhh-hccC
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      ++.|..|++.|. ..+|..|++ |.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            578888888887 478888876 4443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=93.07  E-value=0.0095  Score=36.93  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=13.1

Q ss_pred             CcccccccCcccc-cchHHhHhh
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~  430 (502)
                      +++.|..|++.|. ..+|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            3456666666665 356666655

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=93.82  E-value=2.6  Score=44.81  Aligned_cols=135  Identities=18%  Similarity=0.160  Sum_probs=96.6

Q ss_pred             CCCCeEEeChhHHHHHHcCCCCCCCceEEEEEecCCCCCCCCCCCccCCCCeEEEEEee-eeeCCCceeccHHHHHhcCC
Q 010753           89 GSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLE-FTADEGFVGLPPHVWRNLFP  167 (502)
Q Consensus        89 ~~gDKIiLP~SaL~~L~~~~~~~~~Pl~F~l~n~~~~~~~~~~~~~~~~~~~th~GVlE-FsA~EG~v~LP~wm~~~L~~  167 (502)
                      .....|.|.|+++.+|--.    ++= +-.|...              ..+.|.|.|+- -.-+.|.|-|...+.+|+|+
T Consensus        34 ~d~~~~~~~~~~~~~l~~~----~gd-~v~~~g~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~   94 (489)
T 3hu3_A           34 EDNSVVSLSQPKMDELQLF----RGD-TVLLKGK--------------KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRV   94 (489)
T ss_dssp             CCTTEEEECHHHHHHHTCC----TTC-EEEEECS--------------TTCEEEEEEEECTTSCTTEEECCHHHHHHTTC
T ss_pred             CcCCEEEECHHHHHHcCCC----CCC-EEEEecC--------------ccCcEEEEEeeCCCCCCCEEEecHHHHhhcCC
Confidence            3458999999999999421    111 1223321              23478888862 22356899999999999998


Q ss_pred             CCCCCCceEEEEEE-ecCCcceEEEeeccCCCCCCCCh-HHHHHHHh-c-cCcccccCCEEEEEECCEEEEEEEEEEcCC
Q 010753          168 SDTPNNSFVEVRYV-RLPKGTYAKLQPEGIGFAELPNQ-KAVLETSL-R-QHATLSQDDVLTVNYGELAYKLKVLELKPS  243 (502)
Q Consensus       168 ~~~~~~~~V~v~~~-~LPkGt~vkLqP~~~~f~di~n~-KavLE~~L-R-~~stLT~Gd~I~I~~~~~~y~l~V~e~~P~  243 (502)
                      .   -|+.|+|+-+ .+|.|+-|.|.|.+..--.+..- -..|+.-+ . .+-.+..||.+.+..+...+.+.++..+|.
T Consensus        95 ~---~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (489)
T 3hu3_A           95 R---LGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPS  171 (489)
T ss_dssp             C---TTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESS
T ss_pred             C---CCCEEEEEECCCCCccCEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCC
Confidence            7   5789999998 99999999999987544323221 11233333 2 366788899999999999999999999986


Q ss_pred             Cc
Q 010753          244 SS  245 (502)
Q Consensus       244 ~a  245 (502)
                      ..
T Consensus       172 ~~  173 (489)
T 3hu3_A          172 PY  173 (489)
T ss_dssp             SE
T ss_pred             Cc
Confidence            43

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.77  E-value=0.024  Score=34.67  Aligned_cols=22  Identities=14%  Similarity=0.309  Sum_probs=14.9

Q ss_pred             CcccccccCccccc-chHHhHhh
Q 010753          409 DTVQCKNCKRFIPS-RSIVLHEA  430 (502)
Q Consensus       409 ~~~~C~nC~k~~~~-~~l~lHe~  430 (502)
                      +++.|+.|++.|.. ..|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            45677777777763 66777765

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=93.67  E-value=0.031  Score=34.59  Aligned_cols=24  Identities=17%  Similarity=0.407  Sum_probs=17.7

Q ss_pred             cccccccCcccc-cchHHhH-hh-hcc
Q 010753          410 TVQCKNCKRFIP-SRSIVLH-EA-YCS  433 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lH-e~-~C~  433 (502)
                      ++.|..|++.|. ..+|..| ++ |.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            578888888887 4788888 54 444

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=93.61  E-value=0.038  Score=34.97  Aligned_cols=26  Identities=12%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             Cccccc--ccCcccc-cchHHhHhh-hccC
Q 010753          409 DTVQCK--NCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       409 ~~~~C~--nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      .++.|.  .|++.|. ..+|..|++ |.++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            467888  7988887 488888887 5443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=93.53  E-value=0.032  Score=33.71  Aligned_cols=21  Identities=19%  Similarity=0.409  Sum_probs=16.0

Q ss_pred             cccccccCcccc-cchHHhHhh
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~  430 (502)
                      ++.|..|++.|. +.+|..|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGG
T ss_pred             CccCCCCCCcCCCHHHHHHHHH
Confidence            367888888887 478888876

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.44  E-value=0.031  Score=36.73  Aligned_cols=28  Identities=11%  Similarity=0.184  Sum_probs=20.1

Q ss_pred             ccCcccccccCcccc-c-chHHhHhh-hccC
Q 010753          407 EMDTVQCKNCKRFIP-S-RSIVLHEA-YCSR  434 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~-~~l~lHe~-~C~r  434 (502)
                      .+.++.|..|++.|. . .+|..|++ |.++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            6 SGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            356788888888887 4 58888886 4443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=93.38  E-value=0.039  Score=34.73  Aligned_cols=25  Identities=16%  Similarity=0.352  Sum_probs=18.6

Q ss_pred             ccccc--ccCcccc-cchHHhHhh-hccC
Q 010753          410 TVQCK--NCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       410 ~~~C~--nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      ++.|.  .|++.|. ..+|..|++ |.++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            57787  8888887 488888887 5443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=92.46  E-value=0.015  Score=35.27  Aligned_cols=21  Identities=19%  Similarity=0.634  Sum_probs=17.0

Q ss_pred             ceeeccccccCccccc-ccccCcc
Q 010753          435 HSVACQHAGCGMVLRT-EEARDHV  457 (502)
Q Consensus       435 n~~~C~~~~Cgk~F~k-~~l~~H~  457 (502)
                      ++|.|+.  ||+.|.. +.|..|.
T Consensus         1 kp~~C~~--C~k~f~~~~~l~~H~   22 (26)
T 2lvu_A            1 KPYVCER--CGKRFVQSSQLANHI   22 (26)
Confidence            4788988  9999987 7888773

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.31  E-value=0.028  Score=37.21  Aligned_cols=30  Identities=10%  Similarity=0.226  Sum_probs=22.7

Q ss_pred             cCccccc--ccCcccc-cchHHhHhh-hccCcee
Q 010753          408 MDTVQCK--NCKRFIP-SRSIVLHEA-YCSRHSV  437 (502)
Q Consensus       408 ~~~~~C~--nC~k~~~-~~~l~lHe~-~C~rn~~  437 (502)
                      +.++.|.  .|++.|. +.+|..|++ |.++++|
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5678888  5998887 488888887 6676664

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=93.28  E-value=0.02  Score=45.31  Aligned_cols=52  Identities=21%  Similarity=0.596  Sum_probs=45.2

Q ss_pred             cCcccc-cccCcccccchHHhHhh-hccCceeeccccccCcccccccccCcccCccCC
Q 010753          408 MDTVQC-KNCKRFIPSRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCG  463 (502)
Q Consensus       408 ~~~~~C-~nC~k~~~~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cg  463 (502)
                      -..+.| ..|+..|++..|..|.. .|..+.+.|+.  |+..|...++++|.  ..|.
T Consensus        14 ~~~v~C~~~C~~~v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~--~~Cp   67 (76)
T 2yuc_A           14 FNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHE--GMCP   67 (76)
T ss_dssp             CSCCBCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTT--TSCT
T ss_pred             CcccCCCccccHHhhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHH--hHCC
Confidence            356789 57999999999999998 89999999999  99999999999885  4453

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.23  E-value=0.014  Score=35.71  Aligned_cols=21  Identities=19%  Similarity=0.441  Sum_probs=15.4

Q ss_pred             CceeeccccccCccccc-ccccCc
Q 010753          434 RHSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       434 rn~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      +++|.|+.  ||+.|.. +.|..|
T Consensus         1 ek~~~C~~--C~k~f~~~~~l~~H   22 (27)
T 2kvh_A            1 EKPFSCSL--CPQRSRDFSAMTKH   22 (27)
T ss_dssp             CCCEECSS--SSCEESSHHHHHHH
T ss_pred             CcCccCCC--cChhhCCHHHHHHH
Confidence            36788887  8888877 666666

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.22  E-value=0.039  Score=38.46  Aligned_cols=28  Identities=14%  Similarity=0.223  Sum_probs=21.6

Q ss_pred             cccCcccccc--cCcccc-cchHHhHhh-hcc
Q 010753          406 IEMDTVQCKN--CKRFIP-SRSIVLHEA-YCS  433 (502)
Q Consensus       406 ~~~~~~~C~n--C~k~~~-~~~l~lHe~-~C~  433 (502)
                      ..+++|.|+.  |+|.|. +.+|..|++ |.+
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            4577899985  999997 588888887 544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.17  E-value=0.015  Score=38.11  Aligned_cols=25  Identities=16%  Similarity=0.284  Sum_probs=19.6

Q ss_pred             hccCceeeccccccCccccc-ccccCcc
Q 010753          431 YCSRHSVACQHAGCGMVLRT-EEARDHV  457 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k-~~l~~H~  457 (502)
                      |.++++|.|+.  ||+.|.. +.|..|.
T Consensus         4 h~~~k~~~C~~--C~k~f~~~~~l~~H~   29 (36)
T 2elv_A            4 GSSGLLYDCHI--CERKFKNELDRDRHM   29 (36)
T ss_dssp             SCCCCCEECSS--SCCEESSHHHHHHHH
T ss_pred             CCCCCCeECCC--CCCccCCHHHHHHHH
Confidence            45678888988  9999888 7777773

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.10  E-value=0.015  Score=37.84  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=18.0

Q ss_pred             hccCceeeccccccCccccc-ccccCc
Q 010753          431 YCSRHSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      |.++++|.|+.  ||+.|.. ..|..|
T Consensus         4 h~~~k~~~C~~--C~k~f~~~~~l~~H   28 (36)
T 2elt_A            4 GSSGKPYKCPQ--CSYASAIKANLNVH   28 (36)
T ss_dssp             SCCCCSEECSS--SSCEESSHHHHHHH
T ss_pred             CCCCCCCCCCC--CCcccCCHHHHHHH
Confidence            44677888887  8888887 667666

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.03  E-value=0.012  Score=36.25  Aligned_cols=21  Identities=14%  Similarity=0.303  Sum_probs=15.6

Q ss_pred             CceeeccccccCccccc-ccccCc
Q 010753          434 RHSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       434 rn~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      +++|.|+.  ||+.|.. +.|..|
T Consensus         1 ~k~~~C~~--C~k~f~~~~~l~~H   22 (27)
T 2kvg_A            1 AAPYRCPL--CRAGCPSLASMQAH   22 (27)
T ss_dssp             CCTEEETT--TTEEESCHHHHHHH
T ss_pred             CcCcCCCC--CCcccCCHHHHHHH
Confidence            35788887  8888887 667666

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=92.95  E-value=0.017  Score=41.27  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=21.5

Q ss_pred             hccCceeeccccccCccccc-ccccCcc
Q 010753          431 YCSRHSVACQHAGCGMVLRT-EEARDHV  457 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k-~~l~~H~  457 (502)
                      |.++++|.|+.  ||+.|.. ..|..|.
T Consensus         2 Ht~~kp~~C~~--C~k~F~~~~~L~~H~   27 (48)
T 3iuf_A            2 EDRDKPYACDI--CGKRYKNRPGLSYHY   27 (48)
T ss_dssp             CTTTSCEECTT--TCCEESSHHHHHHHH
T ss_pred             CCCCcCEECCC--cCcccCCHHHHHHHh
Confidence            45689999998  9999998 8888884

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=92.90  E-value=0.053  Score=35.46  Aligned_cols=22  Identities=32%  Similarity=0.703  Sum_probs=10.9

Q ss_pred             CcccccccCcccc-cchHHhHhh
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~  430 (502)
                      +++.|..|++.|. ..+|..|++
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            4455555555554 245555544

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.80  E-value=0.018  Score=37.70  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=18.5

Q ss_pred             hccCceeeccccccCccccc-ccccCc
Q 010753          431 YCSRHSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      |.++++|.|+.  ||+.|.. +.|..|
T Consensus         4 h~~~k~~~C~~--C~k~f~~~~~l~~H   28 (36)
T 2elq_A            4 GSSGKPFKCSL--CEYATRSKSNLKAH   28 (36)
T ss_dssp             SCCCCSEECSS--SSCEESCHHHHHHH
T ss_pred             CCCCCCccCCC--CCchhCCHHHHHHH
Confidence            45678888887  8888887 777776

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=92.60  E-value=0.064  Score=42.08  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=27.2

Q ss_pred             cccCcccccccCcccc-cchHHhHhhhccCceeeccc
Q 010753          406 IEMDTVQCKNCKRFIP-SRSIVLHEAYCSRHSVACQH  441 (502)
Q Consensus       406 ~~~~~~~C~nC~k~~~-~~~l~lHe~~C~rn~~~C~~  441 (502)
                      ..+++|.|..|+|.|. +.+|..|++.+......|..
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~   45 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGY   45 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCS
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCCCcccccc
Confidence            3578999999999998 59999999844334445554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=91.98  E-value=0.076  Score=35.14  Aligned_cols=28  Identities=11%  Similarity=0.254  Sum_probs=19.6

Q ss_pred             ccCccccc--ccCcccc-cchHHhHhh-hccC
Q 010753          407 EMDTVQCK--NCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       407 ~~~~~~C~--nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      .+.++.|.  .|++.|. +.+|..|++ |.++
T Consensus         5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45678887  4888887 477888876 5443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.97  E-value=0.032  Score=34.38  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=17.6

Q ss_pred             ceeeccccccCccccc-ccccCcc
Q 010753          435 HSVACQHAGCGMVLRT-EEARDHV  457 (502)
Q Consensus       435 n~~~C~~~~Cgk~F~k-~~l~~H~  457 (502)
                      ++|.|+.  ||+.|.. +.|..|.
T Consensus         1 k~~~C~~--C~k~f~~~~~l~~H~   22 (29)
T 2lvt_A            1 KPCQCVM--CGKAFTQASSLIAHV   22 (29)
Confidence            4789998  9999988 8888884

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=90.83  E-value=0.14  Score=42.04  Aligned_cols=40  Identities=25%  Similarity=0.580  Sum_probs=31.4

Q ss_pred             ccCccCCCccChhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          457 VHCDKCGQGLQRREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       457 ~hC~~Cgk~f~~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      |.|+.||..+.+..+.+|......  .+.|- |++.|......
T Consensus        11 F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~   53 (79)
T 1wjv_A           11 FTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYK   53 (79)
T ss_dssp             EEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEGGGTT
T ss_pred             EEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCCCCEe
Confidence            778888888888888888776554  68898 99999865543

>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A

Probab=90.69  E-value=1.5  Score=38.45  Aligned_cols=94  Identities=17%  Similarity=0.339  Sum_probs=57.6

Q ss_pred             ceeec-CCccceeeccCcee-EEEEEecccccccccCCceeEEEEEeecCCCCceeEEEcCCCCCCCcccceeeccCCCC
Q 010753          273 KPLLF-GKSESGMVEEGKYV-FYKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAG  350 (502)
Q Consensus       273 ~~l~i-~~~~sg~v~~g~y~-~y~l~l~~~~~~~l~~~~~~i~i~l~~~~~~~d~DlfvS~~~~~~p~~~~h~~ss~d~~  350 (502)
                      .++.+ ++.+.|.+...+.+ .|+|.++.       ++.+.|.|.  . ....+++..+-...     ...+.|++ ..+
T Consensus        19 n~l~~~n~~v~G~l~~~dd~D~y~F~V~~-------~g~v~I~l~--~-~~~~~~~w~ly~~~-----~nyv~y~~-~~g   82 (121)
T 3jqw_A           19 SGPIVPGIPVSGTIENTSDQDYFYFDVIT-------PGEVKIDIN--K-LGYGGATWVVYDEN-----NNAVSYAT-DDG   82 (121)
T ss_dssp             BCCCCTTSCEEEEECSTTCCEEEEEEESS-------CEEEEEEEE--E-CSSSEEEEEEECTT-----SCEEEECE-ECS
T ss_pred             cccccCCcEEEEEeCCcCCeeEEEEEeCC-------CCeEEEEEE--e-cCCCcEEEEEEeCC-----CCeEEEec-cCC
Confidence            35667 99999999866544 49999764       344555554  2 24555666663111     23456664 223


Q ss_pred             CceEEecCCCCcc-ccceEEEEEeccCC-CeeEEEEEE
Q 010753          351 SKVVILSSKDKSV-DVGTYSIGVYGFKD-MTKFQVLVT  386 (502)
Q Consensus       351 sk~i~i~~~~~~l-~a~~~~i~v~~~~~-~~~~~l~v~  386 (502)
                      .+ +.-.   ..+ ..|+|||.||.+.+ ...|+|.|.
T Consensus        83 n~-~~~~---~~~~~pGkYYl~Vy~y~~~~g~Y~l~i~  116 (121)
T 3jqw_A           83 QN-LSGK---FKADKPGRYYIHLYMFNGSYMPYRINIE  116 (121)
T ss_dssp             SE-EEEE---EEECSCEEEEEEEEEEECSCEEEEEEEE
T ss_pred             CE-EEEE---EEeCCCeeEEEEEEEecCCCccEEEEEE
Confidence            32 2111   113 46899999999987 779999875

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=90.34  E-value=0.12  Score=38.30  Aligned_cols=26  Identities=27%  Similarity=0.630  Sum_probs=21.3

Q ss_pred             eeeccccccCcccccccccCc--ccCccCC
Q 010753          436 SVACQHAGCGMVLRTEEARDH--VHCDKCG  463 (502)
Q Consensus       436 ~~~C~~~~Cgk~F~k~~l~~H--~hC~~Cg  463 (502)
                      .|+|-.  ||+.|..++|+.-  .+|+.||
T Consensus         3 iY~C~r--Cg~~fs~~el~~lP~IrCpyCG   30 (48)
T 4ayb_P            3 VYRCGK--CWKTFTDEQLKVLPGVRCPYCG   30 (48)
T ss_dssp             --CCCC--TTTTCCCCCSCCCSSSCCTTTC
T ss_pred             EEEeec--cCCCccHHHHhhCCCcccCccC
Confidence            588988  9999999888766  8999997

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.20  E-value=0.14  Score=38.07  Aligned_cols=21  Identities=19%  Similarity=0.517  Sum_probs=18.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      +.|+.|+..|. ..+|+.||+.
T Consensus        13 ~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHH
T ss_pred             eeCCcccccccchHHHHhhhhh
Confidence            78999999999 9999999985

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=89.66  E-value=0.13  Score=31.23  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=15.4

Q ss_pred             ccccc--ccCcccc-cchHHhHhh
Q 010753          410 TVQCK--NCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       410 ~~~C~--nC~k~~~-~~~l~lHe~  430 (502)
                      ++.|+  .|++.|. ..+|..|++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            46788  8888886 477777776

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=88.39  E-value=0.19  Score=35.19  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=23.0

Q ss_pred             ccCccccc--ccCcccc-cchHHhHhh-hccC
Q 010753          407 EMDTVQCK--NCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       407 ~~~~~~C~--nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      .+.+|.|.  .|++.|. +.+|..|++ |.++
T Consensus        15 ~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             TTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             CCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            46789996  7999998 599999997 5554

>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A

Probab=88.29  E-value=2.7  Score=36.77  Aligned_cols=96  Identities=15%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             cceeec-CCccceeeccCceeE-EEEEecccccccccCCceeEEEEEeecCCCCceeEEEcC-CCCCCCcccceeeccCC
Q 010753          272 LKPLLF-GKSESGMVEEGKYVF-YKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSR-HPLLFPTRHLHEWSSHD  348 (502)
Q Consensus       272 ~~~l~i-~~~~sg~v~~g~y~~-y~l~l~~~~~~~l~~~~~~i~i~l~~~~~~~d~DlfvS~-~~~~~p~~~~h~~ss~d  348 (502)
                      ..+|.+ ++.+.|.+...+.+| |+|.+..       .+.+.|.|.  . ..+.++++++-. ..+.    .-..++. .
T Consensus        20 An~l~~~n~~v~G~l~~~D~~D~y~f~v~~-------~g~v~I~l~--~-~~~~~~~w~ly~~~dl~----nyv~y~~-~   84 (119)
T 1nqj_A           20 ATVIPNFNTTMQGSLLGDDSRDYYSFEVKE-------EGEVNIELD--K-KDEFGVTWTLHPESNIN----DRITYGQ-V   84 (119)
T ss_dssp             CEECCSSSCCEEEEECTTCCEEEEEEEESS-------CEEEEEEEE--E-SSSSEEEEEEEECC--------CCEECE-E
T ss_pred             cceeccCCeEEEEEeCCCCCcEEEEEECCC-------CCeEEEEEE--e-CCCCCEEEEEEccCCCc----cceEEee-c
Confidence            458889 999999998876555 8999753       344555554  2 233445554431 1111    1122221 1


Q ss_pred             CCCceEEecCCCCccccceEEEEEeccCCCeeEEEEEE
Q 010753          349 AGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVT  386 (502)
Q Consensus       349 ~~sk~i~i~~~~~~l~a~~~~i~v~~~~~~~~~~l~v~  386 (502)
                      .+ ..+.-+   ..+..|+|||.||.+...-.|+|.|.
T Consensus        85 ~g-n~~~~~---~~~~pGkYYl~Vy~y~~~g~Y~l~v~  118 (119)
T 1nqj_A           85 DG-NKVSNK---VKLRPGKYYLLVYKYSGSGNYELRVN  118 (119)
T ss_dssp             ET-TEEEEE---EEECSEEEEEEEEEEESCEEEEEEEE
T ss_pred             CC-CcEEEE---EEcCCcEEEEEEEEeCCCceEEEEEe
Confidence            11 122211   22346899999998855889999874

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=85.04  E-value=0.23  Score=41.01  Aligned_cols=31  Identities=19%  Similarity=0.457  Sum_probs=22.9

Q ss_pred             ceeeccccccCcccccccccCcccCccCCCccC
Q 010753          435 HSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ  467 (502)
Q Consensus       435 n~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~  467 (502)
                      ..|.||.  ||+...+..-...|+|+.||..|.
T Consensus        26 ~~y~Cp~--CG~~~v~r~atGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           26 EDHACPN--CGEDRVDRQGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             SCEECSS--SCCEEEEEEETTEEEETTTCCEEE
T ss_pred             ccCcCCC--CCCcceeccCCCeEECCCCCCEec
Confidence            4689998  998655533355699999998764

>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1

Probab=82.98  E-value=4.7  Score=37.62  Aligned_cols=89  Identities=17%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             CCCceeccHHHHHhcCCCCCCCCceEEEEEEecC-Cc---ceEEEeeccCCCCC------C-CChHHHHHHHhccC--cc
Q 010753          151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLP-KG---TYAKLQPEGIGFAE------L-PNQKAVLETSLRQH--AT  217 (502)
Q Consensus       151 ~EG~v~LP~wm~~~L~~~~~~~~~~V~v~~~~LP-kG---t~vkLqP~~~~f~d------i-~n~KavLE~~LR~~--st  217 (502)
                      +.|+|+|.....+-+++.   -++.|.|+.-..| .+   .|+..-=.+.+|..      . =|-..+-..-+++|  ..
T Consensus        54 ~~G~I~ls~~QR~wa~ls---l~~~v~V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qi  130 (189)
T 1cr5_A           54 PPGTIGFNGNQRTWGGWS---LNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQI  130 (189)
T ss_dssp             CTTEEEECHHHHHHHTCC---TTCEEEEEECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHTTCE
T ss_pred             CCCEEecCHHHHHhhccc---CCCeEEEEEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHcCCC
Confidence            789999999888877766   3567888766442 12   33332223344431      1 24444455555566  59


Q ss_pred             cccCCEEEEEECCEEEEEEEEEEcC
Q 010753          218 LSQDDVLTVNYGELAYKLKVLELKP  242 (502)
Q Consensus       218 LT~Gd~I~I~~~~~~y~l~V~e~~P  242 (502)
                      ||.|..|.+.|++..|.|.|.++..
T Consensus       131 ft~gQ~l~f~~~g~~l~l~V~~i~~  155 (189)
T 1cr5_A          131 FSPTQYLIMEFQGHFFDLKIRNVQA  155 (189)
T ss_dssp             ECTTCEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEECCcEEEEEEEEEEE
Confidence            9999999999999999999988764

>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A

Probab=80.78  E-value=0.93  Score=42.59  Aligned_cols=71  Identities=13%  Similarity=0.164  Sum_probs=53.1

Q ss_pred             CCCceeccHHHHHhcCCCCCCCCceEEEEEEecCCcceEEEeeccCCCCCCCChHHHHHHHhccCcccccCCEEEEEEC
Q 010753          151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYG  229 (502)
Q Consensus       151 ~EG~v~LP~wm~~~L~~~~~~~~~~V~v~~~~LPkGt~vkLqP~~~~f~di~n~KavLE~~LR~~stLT~Gd~I~I~~~  229 (502)
                      +.|.|.|++-.|+.|++.   +|+.|.|+..+ -+-|.++..|..    +...-+--|-..+|++.-+..||.+.|.-.
T Consensus        35 D~givrl~p~~m~~Lgl~---~GD~V~I~Gkr-~k~Tva~v~~~~----~~~~g~Irid~~~R~N~gV~iGD~V~V~~~  105 (187)
T 3tiw_A           35 DNSVVSLSQPKMDELQLF---RGDTVLLKGKK-RREAVCIVLSDD----TCSDEKIRMNRVVRNNLRVRLGDVISIQPC  105 (187)
T ss_dssp             CTTEEEECHHHHHHHTCC---TTCEEEEECST-TCEEEEEEEECT----TSCTTEEEECHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCcEEEECHHHHHHcCCC---CCCEEEEECCC-CCeEEEEEEECC----CCCCCEEEeCHHHHhhcCCCCCCEEEEEEC
Confidence            368999999999999998   68899998631 114778887763    233333445677888899999999999843

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=80.63  E-value=1.2  Score=48.40  Aligned_cols=37  Identities=30%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010753           10 EKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEA   46 (502)
Q Consensus        10 ~k~~~e~~~r~~~~~~~~~~e~~~~~~a~~~~~~~~~   46 (502)
                      +...||.|.|++..|.++.+|+.+|++|.+.++++++
T Consensus       306 ~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~  342 (575)
T 2i1j_A          306 KAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQD  342 (575)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3456777888888888888888999998888877776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	502
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.79
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.29
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	97.7
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	97.67
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	97.54
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.54
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	97.51
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.46
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	97.42
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.38
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.32
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.3
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.13
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	97.11
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.93
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.82
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	96.81
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	96.78
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	96.77
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	96.77
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	96.76
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.74
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.66
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.66
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	96.51
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.5
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	96.43
d1e32a3	94	Membrane fusion atpase p97 domain 2, P97-Nc {Mouse	96.32
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	96.18
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.5
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.48
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	95.44
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	95.26
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	95.17
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	94.97
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.85
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.54
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	94.51
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.2
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	94.17
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.96
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.47
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	93.1
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	92.8
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	92.61
d1cz5a2	94	C-terminal domain of VAT-N, VAT-Nc {Archaeon Therm	92.18
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.09
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	92.04
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	91.77
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.99
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.76
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	90.3
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	90.15
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	89.77
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	89.68
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	89.02
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	88.96
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	88.76
d1wlfa1	80	Peroxisome biogenesis factor 1 (PEX-1), domain 2 {	87.92
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	84.18
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	83.51
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	83.51
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	82.9
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	82.51
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	82.47
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	82.05
d2dkta1	74	RING finger and CHY zinc finger domain-containing	80.4

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.2e-09  Score=80.96  Aligned_cols=49  Identities=18%  Similarity=0.421  Sum_probs=41.3

Q ss_pred             cCcccccccCcccc-cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhc
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      +++|.| +||+.|. +.+|..|++ |.+++||.|++                    ||++|. .++|..|+++
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~--------------------C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--------------------CGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTT--------------------TSCEESSSHHHHHHHTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCC--------------------cCCEecCHHHHHHHHhc
Confidence            468999 5999998 599999998 88999988875                    556777 7888888887

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=9.3e-08  Score=70.50  Aligned_cols=40  Identities=20%  Similarity=0.605  Sum_probs=33.5

Q ss_pred             cccCccCCCccC-hhhHHHhhhcccc--eeeec-CCccccccccc
Q 010753          456 HVHCDKCGQGLQ-RREMEKHMKVFHE--QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       456 H~hC~~Cgk~f~-~s~l~kH~~i~Ht--p~~C~-Cg~~f~~~~~~  496 (502)
                      .|.| +||++|. .+.|..|+++|.+  ||.|. ||++|.+.+-+
T Consensus         3 ~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L   46 (53)
T d2csha1           3 LYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHL   46 (53)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHH
T ss_pred             CCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHH
Confidence            3678 4889999 9999999999443  99999 99999987644

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.1e-06  Score=53.45  Aligned_cols=23  Identities=22%  Similarity=0.687  Sum_probs=19.8

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.|++|||+|. +++|.+|+++ ||
T Consensus         3 y~C~eCgK~F~~~s~L~~Hqri-HT   26 (26)
T d1x6ea2           3 YKCLECGKAFSQNSGLINHQRI-HT   26 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHHHH-HH
T ss_pred             ccCCCCcCeeccCcccccCccC-CC
Confidence            56778889999 9999999999 64

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=6.6e-06  Score=56.88  Aligned_cols=31  Identities=23%  Similarity=0.548  Sum_probs=24.3

Q ss_pred             Hhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcc
Q 010753          428 HEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       428 He~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~  478 (502)
                      |+. |.+++||+|+                    +|||+|. .++|.+|+++|
T Consensus         3 H~~~Ht~ekpy~C~--------------------~CgK~F~~~s~L~~H~r~H   35 (38)
T d2cota2           3 SEWQQRERRRYKCD--------------------ECGKSFSHSSDLSKHRRTH   35 (38)
T ss_dssp             CCSCCCCSCSSBCS--------------------SSCCBCSCHHHHHHHHTTT
T ss_pred             cCcccCCCCCEecC--------------------CCCceeeCHHHHHHhCccC
Confidence            665 6778887666                    5668888 89999999993

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.7e-06  Score=56.73  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             ccCcccccccCcccc-cchHHhHh-h-hccCceeecc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHE-A-YCSRHSVACQ  440 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe-~-~C~rn~~~C~  440 (502)
                      .+++|+|..|||.|. +.+|..|+ + |.+++||+|.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            368999999999998 59999996 4 9999999996

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=1.5e-05  Score=54.79  Aligned_cols=30  Identities=13%  Similarity=0.325  Sum_probs=23.9

Q ss_pred             Hhh-hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhc
Q 010753          428 HEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       428 He~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      |.+ |.+++||+|++                    ||++|. +++|..|+++
T Consensus         2 h~R~HTgeKPy~C~~--------------------C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           2 STRGSTGIKPFQCPD--------------------CDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTT--------------------TCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCccCeEeCC--------------------CCCEecCHHHHHHHHhc
Confidence            565 77899987774                    667788 8899999988

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=1e-05  Score=58.49  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=33.9

Q ss_pred             cccchHHhHhhhccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          420 IPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       420 ~~~~~l~lHe~~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      +|+.++..|..|.+++||+|+.                  +.||++|. +++|..|+++ ||
T Consensus         2 ~p~~~l~~h~~h~gekpy~C~~------------------~~C~k~F~~~~~L~~H~r~-Ht   44 (47)
T d1ncsa_           2 LPRGSIDKYVKEMPDKTFECLF------------------PGCTKTFKRRYNIRSHIQT-HL   44 (47)
T ss_dssp             CCCSSGGGSCEEETTTEEECCC------------------TTCCCEECSSSSHHHHHHH-HT
T ss_pred             CCcchhcchhhccCCCCeECCc------------------CCCCccccCchHHHhhccc-cc
Confidence            5677888888899999999975                  34667777 8899999998 54

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.5e-05  Score=55.57  Aligned_cols=29  Identities=31%  Similarity=0.795  Sum_probs=23.9

Q ss_pred             cccCccCCCccC-hhhHHHhhh-cccc---eeeec
Q 010753          456 HVHCDKCGQGLQ-RREMEKHMK-VFHE---QCSCP  485 (502)
Q Consensus       456 H~hC~~Cgk~f~-~s~l~kH~~-i~Ht---p~~C~  485 (502)
                      -|.|++||++|. .++|..|++ + |+   ||.|.
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r~~-Ht~ekpy~C~   38 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIKQV-HTSERPHKCQ   38 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHT-SCCCCCCCSS
T ss_pred             CccCCCCCCCcCChHHhhccCcCc-cCCCcCcCCc
Confidence            366778889999 999999986 6 65   99984

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2e-05  Score=52.95  Aligned_cols=29  Identities=21%  Similarity=0.563  Sum_probs=22.6

Q ss_pred             hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          431 YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.+++||.|+                    +||++|. +++|.+|+++ ||
T Consensus         2 HTgekpy~C~--------------------~Cgk~F~~~~~L~~H~r~-Ht   31 (33)
T d1x6ea1           2 HSGEKPYGCV--------------------ECGKAFSRSSILVQHQRV-HT   31 (33)
T ss_dssp             TTTCCCEECS--------------------SSCCEESSHHHHHHHHHG-GG
T ss_pred             cCCCCCeeCC--------------------CCCCEeCchHHhHhhccc-cC
Confidence            5568887766                    5667888 8999999999 54

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2e-05  Score=53.75  Aligned_cols=30  Identities=20%  Similarity=0.626  Sum_probs=23.7

Q ss_pred             hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          431 YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.+++||+|+                    +||++|. +++|..|+++||.
T Consensus         3 HTgekPy~C~--------------------~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           3 HTGEKPYACS--------------------HCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             CCCCCCEECS--------------------SSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCEECC--------------------CCCCCcCCHhHHHHhCcccCC
Confidence            5678887777                    4667888 8899999999764

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=2.9e-05  Score=52.79  Aligned_cols=19  Identities=26%  Similarity=0.593  Sum_probs=15.8

Q ss_pred             cCCCccC-hhhHHHhhhcccc
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      +|+++|. +++|.+|+++ |+
T Consensus        12 ~C~k~F~~~~~L~~H~r~-Ht   31 (35)
T d1srka_          12 ICLSAFTTKANCARHLKV-HT   31 (35)
T ss_dssp             SSCCEESSHHHHHHHHGG-GT
T ss_pred             CCCCcccChHHHHHHccc-cC
Confidence            5678888 8999999999 64

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.4e-05  Score=50.30  Aligned_cols=23  Identities=26%  Similarity=0.699  Sum_probs=20.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.|++||++|. +++|.+|+++ ||
T Consensus         3 y~C~~C~k~F~~~s~L~~H~r~-Ht   26 (29)
T d1sp1a_           3 FACPECPKRFMRSDHLSKHIKT-HQ   26 (29)
T ss_dssp             SCCTTTTCCCSCSHHHHHHHHG-GG
T ss_pred             EECCcCCCeecchHHhhhhcCc-cC
Confidence            67889999999 9999999999 65

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.32  E-value=4.4e-05  Score=49.74  Aligned_cols=23  Identities=17%  Similarity=0.684  Sum_probs=20.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.|++||++|. ++.|..|+++ ||
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~r~-HT   26 (29)
T d2adra1           3 FVCEVCTRAFARQEHLKRHYRS-HT   26 (29)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHT-TT
T ss_pred             CCCCCCCCCCCCchHcccccCc-cc
Confidence            67889999999 9999999999 54

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=3.3e-05  Score=50.01  Aligned_cols=23  Identities=17%  Similarity=0.613  Sum_probs=18.7

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.|++||++|. +++|.+|+++ ||
T Consensus         4 y~C~~C~k~F~~~~~L~~H~r~-HT   27 (28)
T d1a1ia2           4 FQCRICMRNFSRSDHLTTHIRT-HT   27 (28)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH-HH
T ss_pred             ccCCCCcCEecccccccccCCC-cc
Confidence            45667888898 9999999999 54

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=7e-05  Score=51.05  Aligned_cols=30  Identities=17%  Similarity=0.307  Sum_probs=23.0

Q ss_pred             hccCceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhcccc
Q 010753          431 YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       431 ~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.+++||+|+                    +||++|. +++|.+|++.+|+
T Consensus         3 HTgekP~~C~--------------------~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           3 HSGEKPYECY--------------------ICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CSCCCSEECT--------------------TTCCEESCHHHHHHHHHHHSS
T ss_pred             cCCCCCEeCC--------------------CCcccccchHHHHHHcccccC
Confidence            6678888777                    4667788 8899999876675

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=5.3e-05  Score=51.72  Aligned_cols=28  Identities=29%  Similarity=0.894  Sum_probs=23.1

Q ss_pred             ccCc--cCCCccC-hhhHHHhhhcccc---eeeec
Q 010753          457 VHCD--KCGQGLQ-RREMEKHMKVFHE---QCSCP  485 (502)
Q Consensus       457 ~hC~--~Cgk~f~-~s~l~kH~~i~Ht---p~~C~  485 (502)
                      |.|+  .||++|. ++.|..|+++ |+   ||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~-Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH-HHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCe-eCCCCCEeCC
Confidence            3454  4899999 9999999999 65   99984

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.93  E-value=0.00017  Score=46.82  Aligned_cols=27  Identities=15%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             CcccccccCcccc-cchHHhHhh-hccCc
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      ++|+|+.|+|.|. +.+|..|++ |.+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            4789999999998 599999998 77764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00019  Score=47.03  Aligned_cols=19  Identities=21%  Similarity=0.697  Sum_probs=15.9

Q ss_pred             cCCCccC-hhhHHHhhhcccc
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      -||++|. .+.|+.|+++ ||
T Consensus         9 gCgk~F~~~~~L~~H~r~-HT   28 (30)
T d1ubdc3           9 GCGKRFSLDFNLRTHVRI-HT   28 (30)
T ss_dssp             TCCCEESCHHHHHHHHHH-HH
T ss_pred             CCCceECcHHHcCccccc-cC
Confidence            4778888 8999999999 54

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00016  Score=45.95  Aligned_cols=22  Identities=14%  Similarity=0.525  Sum_probs=17.4

Q ss_pred             CcccccccCcccc-cchHHhHhh
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~  430 (502)
                      ++|+|+.|||.|. +++|..|++
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCcc
Confidence            4678888888887 488888887

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00028  Score=46.46  Aligned_cols=20  Identities=25%  Similarity=0.708  Sum_probs=17.1

Q ss_pred             ccCCCccC-hhhHHHhhhcccc
Q 010753          460 DKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       460 ~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      +.||++|. .++|..|+++ ||
T Consensus         8 ~~C~k~F~~~~~L~~H~r~-Ht   28 (31)
T d1sp2a_           8 SYCGKRFTRSDELQRHKRT-HT   28 (31)
T ss_dssp             TTCCCBCSSHHHHHHHHTT-TS
T ss_pred             CCCCcCcCChhHhhhhcCc-cc
Confidence            46888998 9999999999 54

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0002  Score=48.82  Aligned_cols=30  Identities=13%  Similarity=0.419  Sum_probs=26.7

Q ss_pred             ccccc--cCcccc-cchHHhHhh-hccCceeecc
Q 010753          411 VQCKN--CKRFIP-SRSIVLHEA-YCSRHSVACQ  440 (502)
Q Consensus       411 ~~C~n--C~k~~~-~~~l~lHe~-~C~rn~~~C~  440 (502)
                      +.|+.  |+|.|. +.+|..|++ |.+++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            67875  999998 599999998 9999999996

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00027  Score=45.91  Aligned_cols=27  Identities=15%  Similarity=0.312  Sum_probs=22.9

Q ss_pred             CcccccccCcccc-cchHHhHhh-hccCc
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      ++|.|+.|+|.|. +++|..|++ |.+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            4789999999998 599999998 77764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00032  Score=46.53  Aligned_cols=19  Identities=21%  Similarity=0.595  Sum_probs=15.9

Q ss_pred             cCCCccC-hhhHHHhhhcccc
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      -||++|. .++|.+|+++ |+
T Consensus        10 gC~k~F~r~~~L~~H~r~-Ht   29 (32)
T d1zfda_          10 GCDKAFVRNHDLIRHKKS-HQ   29 (32)
T ss_dssp             TCCCCBSSSHHHHHHHGG-GT
T ss_pred             CCCCeeCCHHHHHHHhhh-cc
Confidence            4778888 8999999999 65

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00019  Score=46.32  Aligned_cols=19  Identities=16%  Similarity=0.527  Sum_probs=13.9

Q ss_pred             cCCCccC-hhhHHHhhhcccc
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      -|||+|. .++|+.|+++ ||
T Consensus         9 gC~K~F~~~~~L~~H~r~-HT   28 (28)
T d1ubdc4           9 GCNKKFAQSTNLKSHILT-HA   28 (28)
T ss_dssp             TCCCCCSSTTTTHHHHHH-HC
T ss_pred             CcCCcCCCHHHHHHHHhh-cc
Confidence            3667777 7788888887 53

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00029  Score=45.79  Aligned_cols=19  Identities=16%  Similarity=0.735  Sum_probs=15.1

Q ss_pred             cCCCccC-hhhHHHhhhcccc
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      -||++|. .+.|.+|+++ ||
T Consensus         9 gC~k~F~~~~~L~~H~r~-Ht   28 (29)
T d1a1ia1           9 SCDRRFSRSADLTRHIRI-HT   28 (29)
T ss_dssp             TCCCEESSHHHHHHHTHH-HH
T ss_pred             CCCcEECchhHhhhhcCc-cC
Confidence            4778888 8899999998 53

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00025  Score=45.72  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=17.2

Q ss_pred             cCcccccccCcccc-cchHHhHhh
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~  430 (502)
                      +++|+|+.|+|.|. +.+|..|++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCC
Confidence            46778888888886 477777776

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00049  Score=47.14  Aligned_cols=28  Identities=18%  Similarity=0.388  Sum_probs=24.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccC
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      .+++|.|+.|||.|. +++|..|++ |.+|
T Consensus         9 ~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            678999999999998 599999998 7664

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0005  Score=44.93  Aligned_cols=23  Identities=17%  Similarity=0.566  Sum_probs=18.3

Q ss_pred             ccCcc--CCCccC-hhhHHHhhhcccc
Q 010753          457 VHCDK--CGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~--Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.|+.  ||++|. ++.|+.|+++ ||
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r~-Ht   28 (30)
T d2glia3           3 HKCTFEGCRKSYSRLENLKTHLRS-HT   28 (30)
T ss_dssp             CCCCSTTCCCCCSSHHHHHHHHHH-TT
T ss_pred             eeCCCCCCCceECChhHhhhhcCc-Cc
Confidence            44545  889999 9999999999 54

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00053  Score=45.73  Aligned_cols=28  Identities=18%  Similarity=0.342  Sum_probs=24.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccC
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      .+++|.|..|||.|. +.+|..|++ |.+|
T Consensus         4 gekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            578999999999998 599999998 6654

>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Cdc48 domain 2-like
superfamily: Cdc48 domain 2-like
family: Cdc48 domain 2-like
domain: Membrane fusion atpase p97 domain 2, P97-Nc
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.0051  Score=50.08  Aligned_cols=74  Identities=18%  Similarity=0.225  Sum_probs=56.3

Q ss_pred             cCCcceEEEeeccCCCCCC--CChHHHHHHHhc-cCcccccCCEEEEEECCEEEEEEEEEEcCCCceEEEcCceEEec
Q 010753          183 LPKGTYAKLQPEGIGFAEL--PNQKAVLETSLR-QHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDI  257 (502)
Q Consensus       183 LPkGt~vkLqP~~~~f~di--~n~KavLE~~LR-~~stLT~Gd~I~I~~~~~~y~l~V~e~~P~~aVsIidTDleVD~  257 (502)
                      +|-|+.|.+-|-+..--.+  .=++.+|.-.+. +|-.|++||++.|+++....+|+|++++|++ .|||--|=.+..
T Consensus         2 i~~~krV~vlP~~DTieglsgnlf~~ylkPYf~~~yrPv~~gD~f~v~g~~r~VEFKVv~~dp~~-~~iV~~~T~I~~   78 (94)
T d1e32a3           2 VKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSP-YCIVAPDTVIHC   78 (94)
T ss_dssp             CCBCSCEEEEEBGGGTTTCBSCHHHHTHHHHHTTSCEEEETTCEEEEEETTEEEEEEEEEESSSS-EEEECTTCCCBC
T ss_pred             CCcccEEEEEecccccCCCCccHHHHHHhHHHhhcCccccCCCEEEEccCCeeEEEEEEeecCCC-ceEEcCCCEEEe
Confidence            6788999999987533333  236677777776 5889999999999999999999999999987 455544443333

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00088  Score=45.35  Aligned_cols=28  Identities=14%  Similarity=0.381  Sum_probs=24.3

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccC
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSR  434 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~r  434 (502)
                      .+++|.|+.|+|.|. +.+|..|++ |..+
T Consensus         5 gekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           5 GEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            578999999999998 599999998 5544

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.003  Score=38.90  Aligned_cols=22  Identities=27%  Similarity=0.901  Sum_probs=19.4

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      +|+.|++.|+ +..|+.||+. ||
T Consensus         3 kc~~c~kcfsrkdklk~hmr~-ht   25 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRC-HT   25 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGG-CC
T ss_pred             ccchhhhHhcchhHHHHHhhc-cC
Confidence            6899999999 9999999998 53

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0028  Score=39.73  Aligned_cols=22  Identities=27%  Similarity=0.768  Sum_probs=19.0

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      .|-+|||+|- .+.|++|+.+ ||
T Consensus         4 vc~ecgkaf~essklkrh~lv-ht   26 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLV-HT   26 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGG-TS
T ss_pred             hHHHHhHHHHHHHHHHHHhhc-cc
Confidence            4889999999 8899999998 54

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.0012  Score=44.80  Aligned_cols=22  Identities=14%  Similarity=0.440  Sum_probs=18.7

Q ss_pred             hhhcccc---eeeec-CCccccccccc
Q 010753          474 HMKVFHE---QCSCP-CGVVLENAAMV  496 (502)
Q Consensus       474 H~~i~Ht---p~~C~-Cg~~f~~~~~~  496 (502)
                      |.++ ||   ||.|+ ||++|.+++.+
T Consensus         2 h~R~-HTgeKPy~C~~C~k~F~~~~~L   27 (37)
T d1p7aa_           2 STRG-STGIKPFQCPDCDRSFSRSDHL   27 (37)
T ss_dssp             CSST-TCCSSSBCCTTTCCCBSSHHHH
T ss_pred             CCCc-cCCccCeEeCCCCCEecCHHHH
Confidence            7788 54   99999 99999998755

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0036  Score=42.11  Aligned_cols=24  Identities=13%  Similarity=0.218  Sum_probs=14.8

Q ss_pred             ccCcccccccCcccc-cchHHhHhh
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~  430 (502)
                      .+++|+|..|+|.|. +.+|..|++
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccccCCCCCCcccChHHHHHHcc
Confidence            455666666666665 366666665

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0036  Score=42.24  Aligned_cols=29  Identities=14%  Similarity=0.260  Sum_probs=24.4

Q ss_pred             ccCcccccccCcccc-cchHHhHhh-hccCc
Q 010753          407 EMDTVQCKNCKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       407 ~~~~~~C~nC~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      .+++|+|+.|+|.|. +.+|..|.+ +.+++
T Consensus         5 gekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            578999999999998 599999985 55544

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0053  Score=40.12  Aligned_cols=27  Identities=15%  Similarity=0.330  Sum_probs=19.0

Q ss_pred             Cccccc--ccCcccc-cchHHhHhh-hccCc
Q 010753          409 DTVQCK--NCKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       409 ~~~~C~--nC~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      ++|.|+  +|+|.|. +.+|..|++ |.+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            357774  6888887 488888887 66653

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0055  Score=39.81  Aligned_cols=24  Identities=13%  Similarity=0.296  Sum_probs=16.0

Q ss_pred             cccccc--cCcccc-cchHHhHhh-hcc
Q 010753          410 TVQCKN--CKRFIP-SRSIVLHEA-YCS  433 (502)
Q Consensus       410 ~~~C~n--C~k~~~-~~~l~lHe~-~C~  433 (502)
                      +|+|..  |+|.|. +.+|..|++ |.+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            567766  777776 377777776 544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0079  Score=38.45  Aligned_cols=20  Identities=25%  Similarity=0.524  Sum_probs=16.7

Q ss_pred             cCCCccC-hhhHHHhhhcccc
Q 010753          461 KCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      -|+|+|. +++|.+|++.+|+
T Consensus         9 gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           9 GCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             TTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCcccCCHHHHHHHHHhhCC
Confidence            4778888 9999999997674

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.0064  Score=43.32  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=26.1

Q ss_pred             ccccCcccccc--cCcccc-cchHHhHhh-hccCc
Q 010753          405 SIEMDTVQCKN--CKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       405 ~~~~~~~~C~n--C~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      ...+++|+|..  |+|.|. +.+|..|++ |.+++
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            45789999976  999998 599999998 77764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0079  Score=38.99  Aligned_cols=24  Identities=17%  Similarity=0.301  Sum_probs=14.0

Q ss_pred             cccccc--cCcccc-cchHHhHhh-hcc
Q 010753          410 TVQCKN--CKRFIP-SRSIVLHEA-YCS  433 (502)
Q Consensus       410 ~~~C~n--C~k~~~-~~~l~lHe~-~C~  433 (502)
                      +|+|+.  |+|.|. +.+|..|++ |.+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            456644  666665 366666665 444

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=94.17  E-value=0.086  Score=41.79  Aligned_cols=92  Identities=17%  Similarity=0.267  Sum_probs=52.1

Q ss_pred             cCCccceeeccC-ceeEEEEEecccccccccCCceeEEEEEeecCCCCceeEEEcCCCCCCCcccceeeccCCCCCceEE
Q 010753          277 FGKSESGMVEEG-KYVFYKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVI  355 (502)
Q Consensus       277 i~~~~sg~v~~g-~y~~y~l~l~~~~~~~l~~~~~~i~i~l~~~~~~~d~DlfvS~~~~~~p~~~~h~~ss~d~~sk~i~  355 (502)
                      +.+++.|.+... ..-.|+|.+..       .+.+.|.|.   ...+.|+||.+=...-.    .........-+.+ ..
T Consensus         8 ~n~ti~G~l~~~dd~D~y~f~l~~-------~~~v~i~l~---~~~~~d~~l~lyd~~g~----~~~~~~~~~~~~~-~~   72 (101)
T d1nqja_           8 FNTTMQGSLLGDDSRDYYSFEVKE-------EGEVNIELD---KKDEFGVTWTLHPESNI----NDRITYGQVDGNK-VS   72 (101)
T ss_dssp             SSCCEEEEECTTCCEEEEEEEESS-------CEEEEEEEE---ESSSSEEEEEEEECC--------CCEECEEETTE-EE
T ss_pred             CCCcEEEEeCCCCcceEEEEECCC-------CCEEEEEEe---CCccCCeEEEEEcCCCC----EEEEecCCCCCce-EE
Confidence            567788988654 45669999753       234445554   23455777777522211    0111110011111 11


Q ss_pred             ecCCCCccccceEEEEEeccCCCeeEEEEEE
Q 010753          356 LSSKDKSVDVGTYSIGVYGFKDMTKFQVLVT  386 (502)
Q Consensus       356 i~~~~~~l~a~~~~i~v~~~~~~~~~~l~v~  386 (502)
                      +.   ..+.+|+|||-|+++.+...|+|+|.
T Consensus        73 ~~---~~~~~GtYyi~V~~~~g~g~Y~L~v~  100 (101)
T d1nqja_          73 NK---VKLRPGKYYLLVYKYSGSGNYELRVN  100 (101)
T ss_dssp             EE---EEECSEEEEEEEEEEESCEEEEEEEE
T ss_pred             EE---EecCCeEEEEEEEecCCcEeEEEEEc
Confidence            11   22457999999999999999999874

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.96  E-value=0.01  Score=37.38  Aligned_cols=25  Identities=28%  Similarity=0.696  Sum_probs=17.7

Q ss_pred             ceeeccccccCcccccccccCcccCccCCCccC-hhhHHHhhhc
Q 010753          435 HSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       435 n~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      .||+|++.||+                  +.|. ++-|++|.++
T Consensus         2 ~py~c~hegcd------------------k~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCD------------------KRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCC------------------CEESSHHHHHHHHHH
T ss_pred             CCccCCccCcc------------------ccccCHHHHhhhhhc
Confidence            47889885444                  5566 7777788776

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.014  Score=35.80  Aligned_cols=21  Identities=14%  Similarity=0.428  Sum_probs=17.9

Q ss_pred             cccccccCcccc-cchHHhHhh
Q 010753          410 TVQCKNCKRFIP-SRSIVLHEA  430 (502)
Q Consensus       410 ~~~C~nC~k~~~-~~~l~lHe~  430 (502)
                      +..|.-|+|.|+ +..|.+|.+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr   22 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMR   22 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGG
T ss_pred             CCccchhhhHhcchhHHHHHhh
Confidence            357999999998 599999998

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.10  E-value=0.022  Score=35.91  Aligned_cols=22  Identities=32%  Similarity=0.767  Sum_probs=17.5

Q ss_pred             ccCccCCCccC-hhhHHHhhhcc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~  478 (502)
                      |.|+.||+.|. ....+.|.+||
T Consensus         4 f~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           4 FACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHHGGG
T ss_pred             cccchhhhhhhcchhhhhhhhhc
Confidence            56778888888 77888898883

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=92.80  E-value=0.032  Score=33.86  Aligned_cols=22  Identities=18%  Similarity=0.626  Sum_probs=19.9

Q ss_pred             ccCccCCCccC-hhhHHHhhhcc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~  478 (502)
                      |+|..|..+|- ++.|.+|+++|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            57889999999 99999999994

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.61  E-value=0.019  Score=36.89  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=12.0

Q ss_pred             ceeeccccccCccccc-ccccCc
Q 010753          435 HSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       435 n~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      +||+|+..||||+|.+ +.|..|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H   23 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRH   23 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhh
Confidence            3555555555555555 555544

>d1cz5a2 d.31.1.1 (A:92-185) C-terminal domain of VAT-N, VAT-Nc {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Cdc48 domain 2-like
superfamily: Cdc48 domain 2-like
family: Cdc48 domain 2-like
domain: C-terminal domain of VAT-N, VAT-Nc
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.18  E-value=0.1  Score=41.96  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             CcceEEEeeccCCCCCC---CChHHHHHHHhccCcccccCCEEEEEE----CCEEEEEEEEEEcCCCceEEEcCceEEec
Q 010753          185 KGTYAKLQPEGIGFAEL---PNQKAVLETSLRQHATLSQDDVLTVNY----GELAYKLKVLELKPSSSVSVLETDIEVDI  257 (502)
Q Consensus       185 kGt~vkLqP~~~~f~di---~n~KavLE~~LR~~stLT~Gd~I~I~~----~~~~y~l~V~e~~P~~aVsIidTDleVD~  257 (502)
                      .|+-|.|.|-...-..+   .+.-..|-+.|.. --+++||+|.|..    ++....|.|.+++|.....+|.-|=++++
T Consensus         3 ~A~kVvLAP~~~~~~~i~~~~~~~~ylk~~L~g-rPV~~GD~i~v~~~~~~g~~~i~F~Vv~t~P~g~~ViIt~~TeI~i   81 (94)
T d1cz5a2           3 IAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIR-RPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEI   81 (94)
T ss_dssp             BCSEEEEEECSCTTTTCCCCSSHHHHHHHHHSS-CEECTTCEECCSSCCCSSCCCCSEEEEEESSSSSCEECCTTCEEEE
T ss_pred             cccEEEECcCCCccceEEEcCCHHHHHHHHHcC-CCCcCCCEEEEeeccccCCceEeEEEEEEeCCCCeEEECCCeEEEE
Confidence            47889999975432233   4666667777766 4789999999964    34678899999999975455544444444

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.026  Score=36.88  Aligned_cols=29  Identities=14%  Similarity=0.321  Sum_probs=24.2

Q ss_pred             CcccccccCcccc-cchHHhHhh-hccCcee
Q 010753          409 DTVQCKNCKRFIP-SRSIVLHEA-YCSRHSV  437 (502)
Q Consensus       409 ~~~~C~nC~k~~~-~~~l~lHe~-~C~rn~~  437 (502)
                      +...|..|||.|. ..+|..|.. |.+++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            4567999999998 488999987 8899887

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.04  E-value=0.027  Score=35.46  Aligned_cols=21  Identities=33%  Similarity=0.770  Sum_probs=18.8

Q ss_pred             ccCccCCCccC-hhhHHHhhhc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKV  477 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i  477 (502)
                      |+|.+|.-+|. +.+|.+||+.
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHS
T ss_pred             cccceeeeeEeeccchhHhhhh
Confidence            68999998888 9999999984

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.031  Score=35.63  Aligned_cols=22  Identities=18%  Similarity=0.554  Sum_probs=15.3

Q ss_pred             ceeeccccccCccccc-ccccCc
Q 010753          435 HSVACQHAGCGMVLRT-EEARDH  456 (502)
Q Consensus       435 n~~~C~~~~Cgk~F~k-~~l~~H  456 (502)
                      +||+|+..||||.|.+ ++|+.|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H   23 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSH   23 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHH
Confidence            4677777777777776 666666

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.99  E-value=0.048  Score=33.99  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=16.4

Q ss_pred             ccccccCcccc-cchHHhHhh-hcc
Q 010753          411 VQCKNCKRFIP-SRSIVLHEA-YCS  433 (502)
Q Consensus       411 ~~C~nC~k~~~-~~~l~lHe~-~C~  433 (502)
                      ..|..|||.|. ++.|..|+. |.+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            46888888886 477777776 554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.76  E-value=0.044  Score=34.06  Aligned_cols=22  Identities=18%  Similarity=0.634  Sum_probs=17.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVF  478 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~  478 (502)
                      ++|.+|.-+-. .++|++|.+||
T Consensus         4 ~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           4 YKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHS
T ss_pred             cccccccchhcchhhHhhhhhcc
Confidence            56778865555 99999999993

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.30  E-value=0.076  Score=34.68  Aligned_cols=22  Identities=14%  Similarity=0.549  Sum_probs=10.9

Q ss_pred             Ccccccc--cCcccc-cchHHhHhh
Q 010753          409 DTVQCKN--CKRFIP-SRSIVLHEA  430 (502)
Q Consensus       409 ~~~~C~n--C~k~~~-~~~l~lHe~  430 (502)
                      ++|.|+.  |+|.|. +.+|..|++
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r   26 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhh
Confidence            3455544  555554 255555554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.15  E-value=0.062  Score=33.04  Aligned_cols=25  Identities=16%  Similarity=0.414  Sum_probs=20.9

Q ss_pred             ccccccCcccc-cchHHhHhh-hccCc
Q 010753          411 VQCKNCKRFIP-SRSIVLHEA-YCSRH  435 (502)
Q Consensus       411 ~~C~nC~k~~~-~~~l~lHe~-~C~rn  435 (502)
                      ++|+.|.|.|. +..|..|-+ |.+++
T Consensus         1 vqcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           1 VECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             CcCcchHHHHHHhHhhhhccccccCCC
Confidence            47999999996 589999987 77764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.043  Score=34.61  Aligned_cols=22  Identities=36%  Similarity=0.865  Sum_probs=18.5

Q ss_pred             ccCccCCCccC---hhhHHHhhhcccc
Q 010753          457 VHCDKCGQGLQ---RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~---~s~l~kH~~i~Ht  480 (502)
                      ++|+.|.  |.   .|+|.+|++-+|.
T Consensus         3 FkC~~Cs--FDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           3 FKCNYCS--FDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             EECSSSS--CEESSHHHHHHHHHHHHS
T ss_pred             cccceec--ccccCcchHHHHHHHHcc
Confidence            6788994  65   8999999998885

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.056  Score=34.75  Aligned_cols=17  Identities=18%  Similarity=0.513  Sum_probs=12.3

Q ss_pred             cCCCccC-hhhHHHhh-hc
Q 010753          461 KCGQGLQ-RREMEKHM-KV  477 (502)
Q Consensus       461 ~Cgk~f~-~s~l~kH~-~i  477 (502)
                      -|+|+|. .|...||+ +.
T Consensus         9 gC~KafsNsSDraKHqnRT   27 (31)
T d2glia4           9 GCSKAFSNASDRAKHQNRT   27 (31)
T ss_dssp             TCCCEESSSSTTHHHHHHT
T ss_pred             Chhhhhcchhhhhhhcccc
Confidence            4667777 77788886 55

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.048  Score=37.46  Aligned_cols=27  Identities=19%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             cCcccccccCcccc-cchHHhHhhhccC
Q 010753          408 MDTVQCKNCKRFIP-SRSIVLHEAYCSR  434 (502)
Q Consensus       408 ~~~~~C~nC~k~~~-~~~l~lHe~~C~r  434 (502)
                      .++|.|.-|+|.|- ..++..|..+|.+
T Consensus         3 iKPYeC~~C~KrFMWRDSF~RH~~~C~k   30 (44)
T d2csha2           3 IKPYECNICAKRFMWRDSFHRHVTSCTK   30 (44)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCceeccchhhhhhhHHHHHHhhhhhhh
Confidence            46777888888887 4777788777744

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.097  Score=32.85  Aligned_cols=23  Identities=26%  Similarity=0.707  Sum_probs=19.2

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.|++||..-. +|-|+||.+. ||
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs-HT   25 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT-HT   25 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TS
T ss_pred             ccccccCcccCCHHHHHHHHHH-hc
Confidence            57888987777 9999999998 54

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.064  Score=34.99  Aligned_cols=24  Identities=25%  Similarity=0.628  Sum_probs=18.1

Q ss_pred             cccCccCCCccC-hhhHHHhhhcccc
Q 010753          456 HVHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       456 H~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      |.-|+.|||+|. -..|++|... |+
T Consensus         5 ~~~ce~cgk~frdvyhlnrhkls-hs   29 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLS-HS   29 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGG-SC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcc-cC
Confidence            456888888888 7788888666 54

>d1wlfa1 d.31.1.1 (A:100-179) Peroxisome biogenesis factor 1 (PEX-1), domain 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Cdc48 domain 2-like
superfamily: Cdc48 domain 2-like
family: Cdc48 domain 2-like
domain: Peroxisome biogenesis factor 1 (PEX-1), domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.92  E-value=0.72  Score=35.88  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             CcceEEEeeccCCCCCC-CChHHHHHHHhc-cCcccccCCEEEEEEC-CEEEEEEEEEEcCCCceEEEcCceEEeccC
Q 010753          185 KGTYAKLQPEGIGFAEL-PNQKAVLETSLR-QHATLSQDDVLTVNYG-ELAYKLKVLELKPSSSVSVLETDIEVDIVS  259 (502)
Q Consensus       185 kGt~vkLqP~~~~f~di-~n~KavLE~~LR-~~stLT~Gd~I~I~~~-~~~y~l~V~e~~P~~aVsIidTDleVD~~~  259 (502)
                      +++.|-+.|.+.+=|+| +-.-..||..|- +-..++.|.++.++.+ +..-+|+|..+.|+.....+.+|-||=+.|
T Consensus         3 ~~~~V~veP~T~dDWEIiEl~a~~lE~~LL~QiRiV~~~~~~~v~v~~~~~~~~~V~~i~P~~~~~~L~~~TEv~VaP   80 (80)
T d1wlfa1           3 SCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQP   80 (80)
T ss_dssp             ECSEEEEEESSHHHHHHHHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEECCTTCEEEECC
T ss_pred             ceEEEEEecCChhhHHHHHHHHHHHHHHHHhheeeccCCCEEEEEECCCcEEEEEEEEecCCCeeEEecCCCEEEeCC
Confidence            56788899997531121 111134777775 5789999999999987 578899999999998888899998887765

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.18  E-value=0.12  Score=37.18  Aligned_cols=32  Identities=13%  Similarity=0.156  Sum_probs=14.2

Q ss_pred             CceeeccccccCccccc----ccccCcccCccCCCccC
Q 010753          434 RHSVACQHAGCGMVLRT----EEARDHVHCDKCGQGLQ  467 (502)
Q Consensus       434 rn~~~C~~~~Cgk~F~k----~~l~~H~hC~~Cgk~f~  467 (502)
                      ++|+.-+.  ||.+|-+    ..+++|..|+.|++.+.
T Consensus        11 ~~Pv~~~~--cGh~fc~~cI~~~l~~~~~CP~c~~~l~   46 (56)
T d2baya1          11 RRPVLSPK--SRTIFEKSLLEQYVKDTGNDPITNEPLS   46 (56)
T ss_dssp             SSEEEETT--TTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             HhcCccCC--CCCcccHHHHHHHHhhccCCCccCCcCC
Confidence            34444444  5555544    22333344555544443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.51  E-value=0.22  Score=30.87  Aligned_cols=24  Identities=21%  Similarity=0.657  Sum_probs=19.4

Q ss_pred             ccCccCCCccC-hhhHHHhhhcccc
Q 010753          457 VHCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       457 ~hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      ++|++|+--.. +|.|..|++--|+
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccCCcchhheeehhhhhHHhhhccc
Confidence            68999976666 9999999986564

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.51  E-value=0.068  Score=36.67  Aligned_cols=25  Identities=16%  Similarity=0.421  Sum_probs=18.3

Q ss_pred             cCceeeccccccCccccc-ccccCc-ccC
Q 010753          433 SRHSVACQHAGCGMVLRT-EEARDH-VHC  459 (502)
Q Consensus       433 ~rn~~~C~~~~Cgk~F~k-~~l~~H-~hC  459 (502)
                      +-+||.|..  |||.|.. .++.+| -||
T Consensus         2 GiKPYeC~~--C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           2 GIKPYECNI--CAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             CCCCEECSS--SCCEESCHHHHHHHHHHH
T ss_pred             CCCceeccc--hhhhhhhHHHHHHhhhhh
Confidence            457888987  8888887 666666 345

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.90  E-value=0.24  Score=36.99  Aligned_cols=9  Identities=22%  Similarity=0.696  Sum_probs=5.1

Q ss_pred             CcccCccCC
Q 010753          455 DHVHCDKCG  463 (502)
Q Consensus       455 ~H~hC~~Cg  463 (502)
                      .+++|..|+
T Consensus        38 ~~F~C~~C~   46 (62)
T d1vd4a_          38 GTFRCTFCH   46 (62)
T ss_dssp             TEEBCSSSC
T ss_pred             CeEEecCCC
Confidence            346666664

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.51  E-value=0.28  Score=30.26  Aligned_cols=23  Identities=26%  Similarity=0.719  Sum_probs=18.7

Q ss_pred             cccccccCccc-ccchHHhHhh-hc
Q 010753          410 TVQCKNCKRFI-PSRSIVLHEA-YC  432 (502)
Q Consensus       410 ~~~C~nC~k~~-~~~~l~lHe~-~C  432 (502)
                      +++|..|||.+ .+.+|.-||+ -|
T Consensus         1 pf~c~kcgkcyfrkenllehearnc   25 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEARNC   25 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHCC
T ss_pred             CCccccchhhhhhHhHHHHHHHHhh
Confidence            57899999865 6799999997 44

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.47  E-value=0.3  Score=30.61  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=11.7

Q ss_pred             CcccccccCccccc-chHHhHhh
Q 010753          409 DTVQCKNCKRFIPS-RSIVLHEA  430 (502)
Q Consensus       409 ~~~~C~nC~k~~~~-~~l~lHe~  430 (502)
                      +++.|..||+.|.. ..-..|..
T Consensus         2 kPf~C~~CgrkFArsderkRH~k   24 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTK   24 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHG
T ss_pred             CCcccchhhhhhhcchhhhhhhh
Confidence            45666666666652 33344443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.05  E-value=0.31  Score=29.83  Aligned_cols=22  Identities=18%  Similarity=0.507  Sum_probs=19.0

Q ss_pred             cCccCCCccC-hhhHHHhhhcccc
Q 010753          458 HCDKCGQGLQ-RREMEKHMKVFHE  480 (502)
Q Consensus       458 hC~~Cgk~f~-~s~l~kH~~i~Ht  480 (502)
                      .|+.|.+.|- +.-|+.|.+- ||
T Consensus         2 qcp~c~k~f~skyylkvhnr~-ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK-HT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH-HS
T ss_pred             cCcchHHHHHHhHhhhhcccc-cc
Confidence            6899999998 9999999988 43

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.40  E-value=0.27  Score=37.43  Aligned_cols=49  Identities=14%  Similarity=0.419  Sum_probs=34.5

Q ss_pred             ccccccCcccc----cchHHhHhh-hccCceeeccccccCcccccccccCcccCccCCCcc
Q 010753          411 VQCKNCKRFIP----SRSIVLHEA-YCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGL  466 (502)
Q Consensus       411 ~~C~nC~k~~~----~~~l~lHe~-~C~rn~~~C~~~~Cgk~F~k~~l~~H~hC~~Cgk~f  466 (502)
                      ..|..||+.++    ...|..|+. .-..+..+|-.  ||....-+     -.|+.||..|
T Consensus        21 l~C~~Cg~~~~C~~C~~~lt~H~~~~k~~~~l~CH~--Cg~~~~~~-----~~C~~Cgs~F   74 (74)
T d2dkta1          21 LKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCIN--CEKLQHAQ-----QTCEDCSTLF   74 (74)
T ss_dssp             EEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESS--SCCEECSC-----SBCSSSCCBS
T ss_pred             EEcCcCcCeeeCCCCCCcccccccccccCCEEEecc--CCCcccCC-----CcCCCCCCCC
Confidence            67999999996    467777763 23456788988  88765433     2588888665