Citrus Sinensis ID: 010780
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 501 | ||||||
| 356560751 | 492 | PREDICTED: uncharacterized protein LOC10 | 0.944 | 0.961 | 0.592 | 1e-172 | |
| 356530054 | 810 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.603 | 0.574 | 1e-169 | |
| 255541672 | 518 | transferase, transferring glycosyl group | 0.982 | 0.949 | 0.568 | 1e-167 | |
| 225426178 | 527 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.943 | 0.540 | 1e-167 | |
| 224075006 | 517 | predicted protein [Populus trichocarpa] | 0.984 | 0.953 | 0.566 | 1e-167 | |
| 297742225 | 490 | unnamed protein product [Vitis vinifera] | 0.960 | 0.981 | 0.556 | 1e-166 | |
| 356511472 | 529 | PREDICTED: uncharacterized protein LOC10 | 0.918 | 0.869 | 0.564 | 1e-165 | |
| 84453206 | 515 | hypothetical protein [Trifolium pratense | 0.952 | 0.926 | 0.569 | 1e-165 | |
| 224053863 | 518 | predicted protein [Populus trichocarpa] | 0.986 | 0.953 | 0.554 | 1e-165 | |
| 356528655 | 503 | PREDICTED: uncharacterized protein LOC10 | 0.920 | 0.916 | 0.570 | 1e-162 |
| >gi|356560751|ref|XP_003548651.1| PREDICTED: uncharacterized protein LOC100790149 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/483 (59%), Positives = 362/483 (74%), Gaps = 10/483 (2%)
Query: 23 NSWSLPKTMICFIVLVSLPYVFYSLILL---YSSDTPNHEPVIRIHRQHSRNKVLVPTHV 79
+SWS K M F +L+S+ Y+FYSL + Y D H P I H + P+
Sbjct: 16 SSWSFSKLMAFFFLLISISYLFYSLRFVSHSYDCDQTPHNPTITHHISFN-----TPSEE 70
Query: 80 PSSDDTEDKTSLKHVVFGIGASSSTWEHRRNYIRTWWRPNVTRGHVWLDKPVKNSSIDH- 138
S+ E+ T++ H+VFGIGAS+ W+ R+ YI+ WWRPN RG VWL++ VK + +
Sbjct: 71 ESTPPFEELTNISHIVFGIGASAKLWKQRKEYIKLWWRPNEMRGVVWLEQKVKTEAQNED 130
Query: 139 LLPPIKVSGDTSKFQYKNPIGTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNL 198
LPP+++S DTS+F+YKN G R AIRISRIVSE+ RLG++ VRWFVMGDDDTVF +NL
Sbjct: 131 FLPPLRISSDTSRFKYKNQKGHRSAIRISRIVSETLRLGMEGVRWFVMGDDDTVFVAENL 190
Query: 199 ARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAISYALAKALEKIQDECLHRN 258
+VL KYDHN++YYIG SESHLQN+ F Y M +GGGGFAISY LA ALEK+QD C+ R
Sbjct: 191 VKVLQKYDHNQFYYIGSSSESHLQNIYFSYNMAYGGGGFAISYPLAVALEKMQDRCIQRY 250
Query: 259 PSLYGSDERIFACMMELGVPLTKHPGFHQLDIYGDLSGILMAHPVAPILSLHHLDLIEPV 318
P LYGSD+RI ACM ELGVPLTK GFHQ D+YG+L G+L AHPV P++SLHHLD++EP+
Sbjct: 251 PGLYGSDDRIQACMAELGVPLTKEKGFHQFDVYGNLFGLLAAHPVTPLVSLHHLDVVEPI 310
Query: 319 FPKMDRVKAVKRLMVPMKLDSAGLIQQSICYCKTRSWTVSVSWGYAVQIYRGIIAAKEMS 378
FP M RV+A+KRL PMKLD AGLIQQSICY K R+WT+SVSWGYAVQI+RGI +A+EM
Sbjct: 311 FPNMSRVQALKRLNRPMKLDPAGLIQQSICYDKARTWTISVSWGYAVQIFRGIFSAREME 370
Query: 379 VPARTFIDWNFGDEDVYFSFNTRPVSTNPCQKPFVYYLSNALFNLNLNRTASEYIRHQES 438
+PARTF++W + + FNTRPVS + CQKPFVYYLS A+++ N TAS+Y+R Q+
Sbjct: 371 MPARTFLNWYKRADYTAYPFNTRPVSRHVCQKPFVYYLSRAVYDEGANETASQYVRVQQ- 429
Query: 439 NSDCDWKIADPSRIKRIEVYKKPDPHLWDKPPRRNCCRILPTKKKGTMVVDVGVCREGEI 498
N +C+WK+ DP++IK + VYKKPDPHLWDK PRRNCCR+ TKK+GTMV+DVG C+E E+
Sbjct: 430 NPECNWKMEDPTQIKVVHVYKKPDPHLWDKAPRRNCCRVRRTKKQGTMVIDVGECKEDEL 489
Query: 499 AGL 501
L
Sbjct: 490 VEL 492
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530054|ref|XP_003533599.1| PREDICTED: uncharacterized protein LOC100777888 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255541672|ref|XP_002511900.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223549080|gb|EEF50569.1| transferase, transferring glycosyl groups, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|225426178|ref|XP_002279187.1| PREDICTED: uncharacterized protein LOC100267372 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224075006|ref|XP_002304515.1| predicted protein [Populus trichocarpa] gi|222841947|gb|EEE79494.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297742225|emb|CBI34374.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356511472|ref|XP_003524450.1| PREDICTED: uncharacterized protein LOC100818244 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|84453206|dbj|BAE71200.1| hypothetical protein [Trifolium pratense] | Back alignment and taxonomy information |
|---|
| >gi|224053863|ref|XP_002298017.1| predicted protein [Populus trichocarpa] gi|118487420|gb|ABK95538.1| unknown [Populus trichocarpa] gi|222845275|gb|EEE82822.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356528655|ref|XP_003532915.1| PREDICTED: uncharacterized protein LOC100795943 [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 501 | ||||||
| TAIR|locus:2177896 | 524 | AT5G41460 [Arabidopsis thalian | 0.904 | 0.864 | 0.549 | 1.8e-142 | |
| TAIR|locus:2117949 | 526 | AT4G23490 [Arabidopsis thalian | 0.934 | 0.889 | 0.548 | 1.3e-141 | |
| TAIR|locus:2025416 | 478 | AT1G01570 [Arabidopsis thalian | 0.904 | 0.947 | 0.552 | 1.5e-138 | |
| TAIR|locus:2128283 | 507 | AT4G11350 [Arabidopsis thalian | 0.986 | 0.974 | 0.504 | 1.1e-135 | |
| TAIR|locus:2026514 | 541 | AT1G07850 [Arabidopsis thalian | 0.848 | 0.785 | 0.518 | 1.5e-124 | |
| TAIR|locus:2126076 | 785 | AT4G00300 [Arabidopsis thalian | 0.904 | 0.577 | 0.508 | 1.7e-121 | |
| TAIR|locus:2040711 | 532 | AT2G37730 [Arabidopsis thalian | 0.940 | 0.885 | 0.417 | 3.3e-102 | |
| TAIR|locus:2196673 | 548 | AT1G33250 [Arabidopsis thalian | 0.860 | 0.786 | 0.397 | 1.8e-85 | |
| TAIR|locus:2080797 | 505 | AT3G11420 [Arabidopsis thalian | 0.802 | 0.796 | 0.416 | 8e-85 | |
| TAIR|locus:2129845 | 488 | AT4G15240 [Arabidopsis thalian | 0.810 | 0.831 | 0.415 | 1.7e-82 |
| TAIR|locus:2177896 AT5G41460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1353 (481.3 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 252/459 (54%), Positives = 327/459 (71%)
Query: 45 YSLILLYSSDTPNH-EPVIRIHRQHSR--NKVLVPTHVPSSDDTEDKTSLKHVVFGIGAS 101
+S ++ +D N +P+I H + P P +T +HVVFGI AS
Sbjct: 63 FSAVVRRLNDIVNSSQPLILFHTNQTAVIKSYASPPPSPPPPPPPPQTGFQHVVFGIAAS 122
Query: 102 SSTWEHRRNYIRTWWRPNVTRGHVWLDKPV-KNSSIDHL-LPPIKVSGDTSKFQYKNPIG 159
+ W+ R+ YI+ W++PN R +VWL+KPV + D + LPP+K+SGDTSKF YKN G
Sbjct: 123 ARLWKQRKEYIKIWYKPNQMRSYVWLEKPVTEEDEEDEISLPPVKISGDTSKFPYKNKQG 182
Query: 160 TRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSES 219
R AIRISRIV+E+ +LGLKDVRWFVMGDDDTVF +NL RVL KYDHN+ YYIG SES
Sbjct: 183 HRSAIRISRIVTETLKLGLKDVRWFVMGDDDTVFVAENLIRVLRKYDHNQMYYIGSLSES 242
Query: 220 HLQNLAXXXXXXXXXXXXAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPL 279
HLQN+ AISY LA AL K+QD C+ R P+LYGSD+R+ ACM ELGVPL
Sbjct: 243 HLQNIYFSYGMAYGGGGFAISYPLAVALSKMQDRCIKRYPALYGSDDRMQACMAELGVPL 302
Query: 280 TKHPGFHQLDIYGDLSGILMAHPVAPILSLHHLDLIEPVFPKMDRVKAVKRLMVPMKLDS 339
TK GFHQ D+YG+L G+L AHPVAP+++LHHLD++EP+FP M RV A+K L VP KLDS
Sbjct: 303 TKELGFHQYDVYGNLFGLLAAHPVAPLVTLHHLDVVEPIFPNMTRVDALKHLQVPAKLDS 362
Query: 340 AGLIQQSICYCKTRSWTVSVSWGYAVQIYRGIIAAKEMSVPARTFIDWNFGDEDVYFSFN 399
AGL+QQSICY K R WTVSVSWG+AVQI+RGI +A+E+ +P+RTF++W + ++FN
Sbjct: 363 AGLMQQSICYDKRRKWTVSVSWGFAVQIFRGIFSAREIEMPSRTFLNWYRRADYTAYAFN 422
Query: 400 TRPVSTNPCQKPFVYYLSNALFNLNLNRTASEYIRHQESNSDCDWKIADPSRIKRIEVYK 459
TRPVS +PCQKPFV+Y+++ + N T S Y H+ ++ +C WK+A+PS IK + VYK
Sbjct: 423 TRPVSRHPCQKPFVFYMTSTRVHRVTNMTVSRYEIHRVAHPECRWKMANPSDIKTVIVYK 482
Query: 460 KPDPHLWDKPPRRNCCRILPTKKKGTMVVDVGVCREGEI 498
KPDPHLWD+ PRRNCCR+ +KK T+ + V VC+EGE+
Sbjct: 483 KPDPHLWDRSPRRNCCRV-KSKKNNTLEISVAVCKEGEV 520
|
|
| TAIR|locus:2117949 AT4G23490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2025416 AT1G01570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2128283 AT4G11350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2026514 AT1G07850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2126076 AT4G00300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2040711 AT2G37730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2196673 AT1G33250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2080797 AT3G11420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2129845 AT4G15240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00002559001 | SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (527 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 501 | |||
| pfam04646 | 256 | pfam04646, DUF604, Protein of unknown function, DU | 1e-146 | |
| PLN03153 | 537 | PLN03153, PLN03153, hypothetical protein; Provisio | 1e-132 | |
| pfam02434 | 248 | pfam02434, Fringe, Fringe-like | 4e-12 |
| >gnl|CDD|218189 pfam04646, DUF604, Protein of unknown function, DUF604 | Back alignment and domain information |
|---|
Score = 418 bits (1076), Expect = e-146
Identities = 148/256 (57%), Positives = 188/256 (73%), Gaps = 2/256 (0%)
Query: 222 QNLAFYYGMGFGGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTK 281
QN+ F YGM FGGGGFAISY LA AL ++QD C+ R P+LYGSD+RI ACM ELGVPLTK
Sbjct: 1 QNIYFSYGMAFGGGGFAISYPLAAALARMQDGCIERYPALYGSDDRIHACMAELGVPLTK 60
Query: 282 HPGFHQLDIYGDLSGILMAHPVAPILSLHHLDLIEPVFPKMDRVKAVKRLMVPMKLDSAG 341
PGFHQ D+ GDL G+L AHPVAP++SLHHLD+++P+FP M+R+ A++ LM KLD A
Sbjct: 61 EPGFHQYDVRGDLLGLLAAHPVAPLVSLHHLDVVDPIFPGMNRLDALRHLMRAAKLDPAR 120
Query: 342 LIQQSICYCKTRSWTVSVSWGYAVQIYRGIIAAKEMSVPARTFIDWNFGDEDVYFSFNTR 401
++QQSICY + WTVSVSWGY VQIYRGI++ +E+ P RTF++W + F+FNTR
Sbjct: 121 ILQQSICYDRRYKWTVSVSWGYTVQIYRGILSPRELERPLRTFLNWYRRADYTAFAFNTR 180
Query: 402 PVSTNPCQKPFVYYLSNALFNLNLNRTASEYIRHQESNS-DCDWKIADPSR-IKRIEVYK 459
PV+ +PCQ+P V++LS+ + T +EY RH+ C W IADP R I +I V K
Sbjct: 181 PVTRDPCQRPRVFFLSSVREDRGRGTTKTEYTRHRVRRDPKCRWPIADPLRKIDQIRVSK 240
Query: 460 KPDPHLWDKPPRRNCC 475
KPDP LW + PRRNCC
Sbjct: 241 KPDPDLWHRAPRRNCC 256
|
This family includes a conserved region found in several uncharacterized plant proteins. Length = 256 |
| >gnl|CDD|215605 PLN03153, PLN03153, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|190308 pfam02434, Fringe, Fringe-like | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 501 | |||
| PLN03153 | 537 | hypothetical protein; Provisional | 100.0 | |
| PF04646 | 255 | DUF604: Protein of unknown function, DUF604; Inter | 100.0 | |
| KOG2246 | 364 | consensus Galactosyltransferases [Carbohydrate tra | 100.0 | |
| PF02434 | 252 | Fringe: Fringe-like; InterPro: IPR003378 The Notch | 99.98 | |
| KOG2287 | 349 | consensus Galactosyltransferases [Carbohydrate tra | 99.39 | |
| KOG3708 | 681 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PLN03193 | 408 | beta-1,3-galactosyltransferase; Provisional | 99.2 | |
| PLN03133 | 636 | beta-1,3-galactosyltransferase; Provisional | 99.19 | |
| PF01762 | 195 | Galactosyl_T: Galactosyltransferase; InterPro: IPR | 99.15 | |
| PTZ00210 | 382 | UDP-GlcNAc-dependent glycosyltransferase; Provisio | 98.77 | |
| KOG2288 | 274 | consensus Galactosyltransferases [Carbohydrate tra | 98.32 | |
| PF05679 | 499 | CHGN: Chondroitin N-acetylgalactosaminyltransferas | 94.15 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 93.25 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 91.18 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 90.91 | |
| PF13506 | 175 | Glyco_transf_21: Glycosyl transferase family 21 | 90.55 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 90.53 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 88.81 | |
| PF01755 | 200 | Glyco_transf_25: Glycosyltransferase family 25 (LP | 86.3 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 85.27 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 82.79 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 82.27 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 81.27 | |
| cd06532 | 128 | Glyco_transf_25 Glycosyltransferase family 25 [lip | 81.22 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 81.2 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 80.39 | |
| PF13632 | 193 | Glyco_trans_2_3: Glycosyl transferase family group | 80.21 | |
| cd06436 | 191 | GlcNAc-1-P_transferase N-acetyl-glucosamine transf | 80.06 |
| >PLN03153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-114 Score=910.62 Aligned_cols=471 Identities=39% Similarity=0.710 Sum_probs=423.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccC----------------CCCC--CCCccc---cccc------ccccccccCCCC
Q 010780 26 SLPKTMICFIVLVSLPYVFYSLILLYS----------------SDTP--NHEPVI---RIHR------QHSRNKVLVPTH 78 (501)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~c--~~~~~~---~~~~------~~~~~~~~~~~~ 78 (501)
.++++++++|+.+.++|++|++..+.. .+.| +.+... .+.. +|+.... +...
T Consensus 30 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 108 (537)
T PLN03153 30 AVVAVAALLLSTTAWLSLVFSGTTARCWHRFKDWEGSPDTLLWNKRYHHPIVTPLPPPPSSPSLPSSLLLDHFRN-RSLS 108 (537)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccccccCccccCcccccccccccccccccccccccccc-cccC
Confidence 588999999999999999999766543 3345 222111 0000 1111010 0111
Q ss_pred CCCCCCCCCCCccceEEEEEecCCchhHhhHHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCeeecCCCCcccccCCC
Q 010780 79 VPSSDDTEDKTSLKHVVFGIGASSSTWEHRRNYIRTWWRPNVTRGHVWLDKPVKNSSIDHLLPPIKVSGDTSKFQYKNPI 158 (501)
Q Consensus 79 ~~~~~~~~~~~~l~~IvFgI~TS~k~~~~R~~~ik~Ww~~~~~rg~vfld~~~~~~~~~~~LP~v~is~dts~f~y~~~~ 158 (501)
..++.....+|+++||||||+|++++|++|++|||.||+++.|||+||+|+.+.+..++..+|+++|+.|+|+|.|+++.
T Consensus 109 ~~~~~~~~~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~~~~~~~~P~i~is~d~s~f~y~~~~ 188 (537)
T PLN03153 109 EIERLKVEAELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSPEEGDDSLPPIMVSEDTSRFRYTNPT 188 (537)
T ss_pred CCCCcccCCCCccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCCCCCcCCCCCEEeCCCcccccccCCC
Confidence 12334555779999999999999999999999999999999999999999877654478889999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccccccccccccccccce
Q 010780 159 GTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFA 238 (501)
Q Consensus 159 g~~~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~y~~a~GGaGiv 238 (501)
|++.++++++|+.|+++.+.+++|||||+||||||+++||+++|++||+++++|||..+|...++..|++.||||||||+
T Consensus 189 Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~ 268 (537)
T PLN03153 189 GHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIA 268 (537)
T ss_pred CcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888999999999
Q ss_pred ecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCCCcccccCCCcccccccCCCCceeeeccCCCCCCc
Q 010780 239 ISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQLDIYGDLSGILMAHPVAPILSLHHLDLIEPV 318 (501)
Q Consensus 239 LSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~gfhq~d~~gd~~g~~~s~~~~PlvSlHHl~~~~p~ 318 (501)
||++||++|.++++.|.++|...+++|.+||+||+++||+||+++||||+|++||++|++++||++|+|||||++.++|+
T Consensus 269 LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~vSlHH~~~~~p~ 348 (537)
T PLN03153 269 ISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPFVSIHHVEAVDPF 348 (537)
T ss_pred EcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCceeeeeccccccc
Confidence 99999999999999999988878999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHhhhhccccCccceeEEEEEeecCcceEEEeecceEEEEEcCCCCccccccccccccccccCCCCcCccc
Q 010780 319 FPKMDRVKAVKRLMVPMKLDSAGLIQQSICYCKTRSWTVSVSWGYAVQIYRGIIAAKEMSVPARTFIDWNFGDEDVYFSF 398 (501)
Q Consensus 319 fp~~~~~~al~~l~~a~~~d~~~~lq~~ic~D~~~~w~~~vs~Gysv~~y~~~~~~~~l~~~~~Tf~~w~~~~~~~~~~f 398 (501)
||+|++.+||+++..|+++|++++|||+||||..++|+|+||||||||+|++++.++||++||+||.+|++..+.++|+|
T Consensus 349 fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fsvSwGysV~~y~~~~~~~dl~~~e~Tf~~w~~~~~~~~f~f 428 (537)
T PLN03153 349 YPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFSISLGYVVQVFPSIVLPRDLERSELTYSAWNKISHRNEFDL 428 (537)
T ss_pred cCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEEEeccEEEEEecCCCCchhhhhhHhhhhhhcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cCCCCCCCCCCCCeEEEeeceeeecCCCceEEEEEEecccC-----CCCCCCCCCCCCceEEEEeecCCCCCCCCCcccc
Q 010780 399 NTRPVSTNPCQKPFVYYLSNALFNLNLNRTASEYIRHQESN-----SDCDWKIADPSRIKRIEVYKKPDPHLWDKPPRRN 473 (501)
Q Consensus 399 ~trp~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~r~~~~~-----~~c~~~~~~~~~~~~i~v~~~~~~~~w~~~prr~ 473 (501)
||||+.+++|+||++|||++|.. +++++++.|+|+++++ +.|.+.+.++.+|++|+|+++|++++|++|||||
T Consensus 429 ntr~~~r~~c~~p~~f~l~~~~~--~~~~~~~~Y~r~~~~~~~~~~~~C~~~~~~~~~v~~i~V~~~~~~~~w~~aprr~ 506 (537)
T PLN03153 429 DTRDPIKSVCKKPILFFLKDVGR--EGNATLGTYSRARMKDDLKRKVFCFPRSLPLPYVEKIQVLGFPLSKNWHLVPRRL 506 (537)
T ss_pred cCCCCCCCcccCceEEEeeeccc--cCCeeEEEEEEecccccccccccccccCCChhhceEEEEecCCCccchhhcchhh
Confidence 99999999999999999999964 4678999999997543 6788887655899999999999999999999999
Q ss_pred cccccCCCCCceEEEEEeeecCCcccc
Q 010780 474 CCRILPTKKKGTMVVDVGVCREGEIAG 500 (501)
Q Consensus 474 cc~~~~~~~~~~~~~~i~~c~~~e~~~ 500 (501)
||+|++++ +++|+|+||.|++||+++
T Consensus 507 CC~v~~~~-~~~~~i~v~~C~~~e~~~ 532 (537)
T PLN03153 507 CCRLNQTS-DELLTLTVGQCEKGSLGS 532 (537)
T ss_pred heeccCCC-CCcEEEEEEeccCCcccc
Confidence 99999886 889999999999999975
|
|
| >PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins | Back alignment and domain information |
|---|
| >KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms [] | Back alignment and domain information |
|---|
| >KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3708 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN03193 beta-1,3-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PLN03133 beta-1,3-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase | Back alignment and domain information |
|---|
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
| >PF13506 Glyco_transf_21: Glycosyl transferase family 21 | Back alignment and domain information |
|---|
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
| >PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
| >cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis | Back alignment and domain information |
|---|
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
| >cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 501 | |||
| 2j0a_A | 280 | Beta-1,3-N-acetylglucosaminyltransferase manic FR; | 2e-32 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 |
| >2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A* Length = 280 | Back alignment and structure |
|---|
Score = 124 bits (311), Expect = 2e-32
Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 25/238 (10%)
Query: 88 KTSLKHVVFGIGASSSTWEHRRNYIRTWWRPNVTRGHVWLDKPVKNSSIDHLLPPIKVSG 147
+ L + + + + R + + W + + + L P + V+
Sbjct: 9 ELQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERLGPHLVVTQ 68
Query: 148 DTSKFQYKNPIGTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDH 207
+++ + ++ +E + +RWF DDD L ++L +
Sbjct: 69 CSAEHSHPA--------LSCKMAAEFDAFLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQ 120
Query: 208 NEYYYIGYPS----------ESHLQNLAFYYGMGFGGGGFAISYALAKALEKIQDEC--L 255
+ Y+G PS +S + + GG GF I+ LA + +
Sbjct: 121 DRDVYVGKPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFV 180
Query: 256 HRNPSLYGSDERIFACMME--LGVPLTKHPGFHQLDIYGDLSGILMAHPVAPILSLHH 311
+ + D+ ++E LG L P FH + + +L A + ++L +
Sbjct: 181 DTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHS---HLETLQLLGAAQLPEQVTLSY 235
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 501 | |||
| 2j0a_A | 280 | Beta-1,3-N-acetylglucosaminyltransferase manic FR; | 100.0 |
| >2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=276.59 Aligned_cols=236 Identities=17% Similarity=0.218 Sum_probs=153.4
Q ss_pred CCCCCCCCccceEEEEEecCCchhHhhHHHHHhhhcCC-CccEEEEecCCCCCCCCCCCCCCee----ecCCCCcccccC
Q 010780 82 SDDTEDKTSLKHVVFGIGASSSTWEHRRNYIRTWWRPN-VTRGHVWLDKPVKNSSIDHLLPPIK----VSGDTSKFQYKN 156 (501)
Q Consensus 82 ~~~~~~~~~l~~IvFgI~TS~k~~~~R~~~ik~Ww~~~-~~rg~vfld~~~~~~~~~~~LP~v~----is~dts~f~y~~ 156 (501)
+++.++++++++|+|||+|++++|++|+++|+.||++. ..+++||+|.++. .+|.+. +..+.+. .|+
T Consensus 3 ~~~~~~~~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~~~fifsd~~d~------~l~~~~~~~~~~~~~~~-~~~- 74 (280)
T 2j0a_A 3 MNPGPLELQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDE------RLQERLGPHLVVTQCSA-EHS- 74 (280)
T ss_dssp ------CCCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGGGEEEEESSCCH------HHHHHHGGGEEECCC-------
T ss_pred CCCCCCCCCcccEEEEEECcHHHHHHHHHHHHHHHhccCCCceEEEcCCCcc------cccccccccceeccccc-ccc-
Confidence 34455778999999999999999999999998888764 4678888886422 233221 2222211 121
Q ss_pred CCCCcchhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccc----------ccc
Q 010780 157 PIGTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQN----------LAF 226 (501)
Q Consensus 157 ~~g~~~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~----------~~f 226 (501)
.+++. .|+..++.+ +..+++|||+++||||||+++||+++|++||+++++|||.+++..... ..+
T Consensus 75 ~~~l~--~K~~~~~~~---~l~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~~~~~~~~~~~~~ 149 (280)
T 2j0a_A 75 HPALS--CKMAAEFDA---FLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKQRTKLV 149 (280)
T ss_dssp --CCC--HHHHHHHHH---HHHHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC------------------
T ss_pred ccchH--HHHHHHHHH---HhCCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccccccCcccccccc
Confidence 12222 233333332 224799999999999999999999999999999999999998664211 112
Q ss_pred ccccccccccceecHHHHHHHHHHHHHhhh--cCC-CCCCchHHHHHHHH-hcCCCeeecCCCcccccC-CCcccccccC
Q 010780 227 YYGMGFGGGGFAISYALAKALEKIQDECLH--RNP-SLYGSDERIFACMM-ELGVPLTKHPGFHQLDIY-GDLSGILMAH 301 (501)
Q Consensus 227 ~y~~a~GGaGivLSr~ll~~L~~~~d~C~~--~~~-~~~~~D~~Lg~Ci~-~lGV~lt~~~gfhq~d~~-gd~~g~~~s~ 301 (501)
++.||+||||||||++|+++|.+..+.|.- ... ....+|..||+||+ ++||+++++++|||+... ++..+..-.+
T Consensus 150 ~~~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~~~~~~~~~~~l~~ 229 (280)
T 2j0a_A 150 RFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLETLQLLGAAQLPE 229 (280)
T ss_dssp -CCEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSSSCGGGCCTTTGGG
T ss_pred ccCcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCCchhccCCHHHhcc
Confidence 456899999999999999999998766611 111 12346888999999 899999999999998642 4443322222
Q ss_pred CCCceeeeccCCC------CCCcCCCc---cHHHHHHhhh
Q 010780 302 PVAPILSLHHLDL------IEPVFPKM---DRVKAVKRLM 332 (501)
Q Consensus 302 ~~~PlvSlHHl~~------~~p~fp~~---~~~~al~~l~ 332 (501)
++.+|+|.+.. .+..|... +|..+|..++
T Consensus 230 --~~~~s~~~~~~~~n~~~~~~~f~~~~dp~r~~~~h~~~ 267 (280)
T 2j0a_A 230 --QVTLSYGVFEGKLNVIKLPGPFSHEEDPSRFRSLHCLL 267 (280)
T ss_dssp --CSEEECEEETTEEECCCCCCSSCTTTCTTSHHHHHHHH
T ss_pred --CcceecccccCccceeccCCccccccCCcceeeeeeee
Confidence 35589994321 12234322 4666666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 501 | |||
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 80.41 |
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Spore coat polysaccharide biosynthesis protein SpsA domain: Spore coat polysaccharide biosynthesis protein SpsA species: Bacillus subtilis [TaxId: 1423]
Probab=80.41 E-value=1.3 Score=39.00 Aligned_cols=103 Identities=9% Similarity=0.194 Sum_probs=58.0
Q ss_pred HHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcC--CCCCCceEEccCC-----Ccc---------ccccccccccc
Q 010780 169 IVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKY--DHNEYYYIGYPSE-----SHL---------QNLAFYYGMGF 232 (501)
Q Consensus 169 mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~y--D~~~p~YIG~~se-----~~~---------~~~~f~y~~a~ 232 (501)
.+....+. . +.+|++++|+|.++.++.|..+++.+ +++..++.|.... ... ....+...+..
T Consensus 79 a~N~gi~~-a-~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (255)
T d1qg8a_ 79 LINQAIEM-A-EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVTWNAPCAI 156 (255)
T ss_dssp HHHHHHHH-C-CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEEEEECCCSCBSCCTTTS
T ss_pred cccccccc-c-ccccccccccccccccchHHHHHHHHHhCCCCCeEeecceeeeeCCCCcEeeeecccchhhhhhhcccc
Confidence 33444444 2 56999999999999876666555543 3444444443210 000 00111223456
Q ss_pred ccccceecHHHHHHHHHHHHHhhhcCC-CCCCchHHHHHHHH
Q 010780 233 GGGGFAISYALAKALEKIQDECLHRNP-SLYGSDERIFACMM 273 (501)
Q Consensus 233 GGaGivLSr~ll~~L~~~~d~C~~~~~-~~~~~D~~Lg~Ci~ 273 (501)
+++++++++.+++++........+... ....+|..+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~dl~lrl~ 198 (255)
T d1qg8a_ 157 DHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVN 198 (255)
T ss_dssp CGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHhhCCCccccchhcchhhHHHHHHHH
Confidence 889999999999998776533322111 12356777765553
|