Citrus Sinensis ID: 010787
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 501 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.998 | 0.698 | 0.846 | 0.0 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.978 | 0.689 | 0.677 | 0.0 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.958 | 0.689 | 0.693 | 0.0 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.976 | 0.692 | 0.664 | 0.0 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.996 | 0.668 | 0.620 | 0.0 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.974 | 0.665 | 0.620 | 0.0 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.978 | 0.683 | 0.618 | 1e-179 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.980 | 0.665 | 0.574 | 1e-169 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.972 | 0.646 | 0.567 | 1e-168 | |
| Q9SL29 | 678 | Putative cyclic nucleotid | no | no | 0.950 | 0.702 | 0.570 | 1e-165 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/507 (84%), Positives = 461/507 (90%), Gaps = 7/507 (1%)
Query: 1 MGGSEVVNTKNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA 60
M GS +NTKN+LKF+V FQY+PRF+RIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA
Sbjct: 210 MRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA 269
Query: 61 SHVLGASWYLFSIERETTCWKGHCKMDN----GCKLYCD-DGQGNNAFLGDFCPIQPADT 115
SHV GA WYLFSIERET CWK C+ +N LYCD + G NAFL + CPIQ +T
Sbjct: 270 SHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTPNT 329
Query: 116 KLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFIS 175
LF+FGIFL AL+SG+VES FP+KFFYCFWWGL+NLSSLGQNL+TSTY+WEICFAVFIS
Sbjct: 330 TLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFIS 389
Query: 176 ISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKW 235
I+GLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWM+HRLLP+ LR+RIRRYEQYKW
Sbjct: 390 IAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKW 449
Query: 236 QETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTE 295
QETRGVDEENLL NLPKDLRRDIKRHLCLALLMRVP+FEKMDEQLLDALCDRL+PVLYTE
Sbjct: 450 QETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTE 509
Query: 296 ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSS 355
ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGF NSEYLGAGDFCGEELLTWALDP SS
Sbjct: 510 ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSS 569
Query: 356 SNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFI 415
SNLPISTRTVRAL EVEAFAL ADDLKFVASQFRRLHSKQLRHTFR+YSQQW++WAACFI
Sbjct: 570 SNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFI 629
Query: 416 QAAWRRYSKKKLEESLRAEENRLQDALAK-AGGSSPSLGATIYASRFAANALRLIRRN-S 473
QAAWRRY KKKLEESL+ EENRLQDALAK A GSSPSLGATIYASRFAAN LR IRR+ S
Sbjct: 630 QAAWRRYIKKKLEESLKEEENRLQDALAKEACGSSPSLGATIYASRFAANILRTIRRSGS 689
Query: 474 TRKTRVPERVPPMLLQKPAEPDFTVEE 500
RK R+PER+PPMLLQKPAEPDF ++
Sbjct: 690 VRKPRMPERMPPMLLQKPAEPDFNSDD 716
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Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 501 | ||||||
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.996 | 0.704 | 0.853 | 0.0 | |
| 356516029 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 1.0 | 0.700 | 0.850 | 0.0 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 1.0 | 0.597 | 0.855 | 0.0 | |
| 356509281 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 1.0 | 0.700 | 0.846 | 0.0 | |
| 224118210 | 709 | predicted protein [Populus trichocarpa] | 0.996 | 0.703 | 0.853 | 0.0 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 1.0 | 0.697 | 0.836 | 0.0 | |
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.998 | 0.705 | 0.821 | 0.0 | |
| 449456377 | 713 | PREDICTED: cyclic nucleotide-gated ion c | 0.994 | 0.698 | 0.830 | 0.0 | |
| 15238657 | 716 | cyclic nucleotide-gated ion channel 1 [A | 0.998 | 0.698 | 0.846 | 0.0 | |
| 297796139 | 716 | hypothetical protein ARALYDRAFT_918383 [ | 0.998 | 0.698 | 0.852 | 0.0 |
| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/505 (85%), Positives = 464/505 (91%), Gaps = 6/505 (1%)
Query: 1 MGGSEVVNTKNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA 60
MGGS +NTKNLLKFVV+FQYVPRF+RIYPLYKEVT TSGILTETAWAGAAFNLFLYMLA
Sbjct: 205 MGGSSYLNTKNLLKFVVIFQYVPRFVRIYPLYKEVT-TSGILTETAWAGAAFNLFLYMLA 263
Query: 61 SHVLGASWYLFSIERETTCWKGHCKMDNGCK---LYCD-DGQGNNAFLGDFCPIQPADTK 116
SH+LGA WYLFSIERET CW+ C ++GCK L+CD D G+ FL +CPIQ +
Sbjct: 264 SHILGAFWYLFSIERETNCWRKACGKNSGCKPELLFCDRDVVGDVTFLDGYCPIQTPNET 323
Query: 117 LFNFGIFLGALESGIVESTY-FPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFIS 175
+FNFGIFL AL+SG+V S+ FP+KFFYCFWWGL+NLSSLGQNL+TSTYVWEICFAVFIS
Sbjct: 324 IFNFGIFLDALQSGVVLSSMDFPQKFFYCFWWGLQNLSSLGQNLQTSTYVWEICFAVFIS 383
Query: 176 ISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKW 235
ISGLVLFSFLIGNMQTYLQSTTTRLEEMR+KRRDAEQWM+HRLLPD ++ERIRRYEQY+W
Sbjct: 384 ISGLVLFSFLIGNMQTYLQSTTTRLEEMRIKRRDAEQWMSHRLLPDNIKERIRRYEQYRW 443
Query: 236 QETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTE 295
QETRGVDEE L+ NLPKDLRRDIKRHLCLALLMRVP+FEKMDEQLLDA+CDRLKP LYTE
Sbjct: 444 QETRGVDEETLVHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPALYTE 503
Query: 296 ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSS 355
ESYIVREGDPVDEMLF+MRGKLLT+TTNGGRTGFFNSEYL AGDFCGEELLTWALDP SS
Sbjct: 504 ESYIVREGDPVDEMLFVMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSS 563
Query: 356 SNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFI 415
SNLPISTRTVR +TEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWR+WAACFI
Sbjct: 564 SNLPISTRTVRTITEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFI 623
Query: 416 QAAWRRYSKKKLEESLRAEENRLQDALAKAGGSSPSLGATIYASRFAANALRLIRRNSTR 475
QAAWRRYSKKKLEESLR EENRLQDALAKA SSPSLGATIYASRFAANALR +RR S R
Sbjct: 624 QAAWRRYSKKKLEESLRQEENRLQDALAKASASSPSLGATIYASRFAANALRALRRGSNR 683
Query: 476 KTRVPERVPPMLLQKPAEPDFTVEE 500
K+RVP+RVPPMLLQKPAEPDFT EE
Sbjct: 684 KSRVPDRVPPMLLQKPAEPDFTAEE 708
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449456377|ref|XP_004145926.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 501 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.998 | 0.698 | 0.850 | 1.2e-232 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.958 | 0.689 | 0.693 | 2.1e-180 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.974 | 0.691 | 0.665 | 1.1e-176 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.994 | 0.666 | 0.625 | 1.3e-171 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.974 | 0.665 | 0.620 | 2.2e-167 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.974 | 0.680 | 0.626 | 3.8e-165 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.980 | 0.665 | 0.583 | 1.7e-155 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.878 | 0.648 | 0.618 | 1.7e-152 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.980 | 0.652 | 0.567 | 2.6e-150 | |
| TAIR|locus:2046703 | 726 | CNGC14 "cyclic nucleotide-gate | 0.854 | 0.589 | 0.611 | 5.9e-148 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2244 (795.0 bits), Expect = 1.2e-232, P = 1.2e-232
Identities = 431/507 (85%), Positives = 463/507 (91%)
Query: 1 MGGSEVVNTKNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA 60
M GS +NTKN+LKF+V FQY+PRF+RIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA
Sbjct: 210 MRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA 269
Query: 61 SHVLGASWYLFSIERETTCWKGHCKMDNG-C--KL-YCD-DGQGNNAFLGDFCPIQPADT 115
SHV GA WYLFSIERET CWK C+ +N C KL YCD + G NAFL + CPIQ +T
Sbjct: 270 SHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTPNT 329
Query: 116 KLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFIS 175
LF+FGIFL AL+SG+VES FP+KFFYCFWWGL+NLSSLGQNL+TSTY+WEICFAVFIS
Sbjct: 330 TLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFIS 389
Query: 176 ISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKW 235
I+GLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWM+HRLLP+ LR+RIRRYEQYKW
Sbjct: 390 IAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKW 449
Query: 236 QETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTE 295
QETRGVDEENLL NLPKDLRRDIKRHLCLALLMRVP+FEKMDEQLLDALCDRL+PVLYTE
Sbjct: 450 QETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTE 509
Query: 296 ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSS 355
ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGF NSEYLGAGDFCGEELLTWALDP SS
Sbjct: 510 ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSS 569
Query: 356 SNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFI 415
SNLPISTRTVRAL EVEAFAL ADDLKFVASQFRRLHSKQLRHTFR+YSQQW++WAACFI
Sbjct: 570 SNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFI 629
Query: 416 QAAWRRYSKKKLEESLRAEENRLQDALAK-AGGSSPSLGATIYASRFAANALRLIRRN-S 473
QAAWRRY KKKLEESL+ EENRLQDALAK A GSSPSLGATIYASRFAAN LR IRR+ S
Sbjct: 630 QAAWRRYIKKKLEESLKEEENRLQDALAKEACGSSPSLGATIYASRFAANILRTIRRSGS 689
Query: 474 TRKTRVPERVPPMLLQKPAEPDFTVEE 500
RK R+PER+PPMLLQKPAEPDF ++
Sbjct: 690 VRKPRMPERMPPMLLQKPAEPDFNSDD 716
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65717 | CNGC1_ARATH | No assigned EC number | 0.8461 | 0.9980 | 0.6983 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_LG_XV000064 | hypothetical protein (708 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 501 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 4e-19 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 4e-13 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 6e-10 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 2e-08 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 1e-06 | |
| pfam00520 | 194 | pfam00520, Ion_trans, Ion transport protein | 3e-04 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-19
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 272 LFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFN 331
LF +D++ L+ L D L+ + I+R+GDP D + ++ G + +
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGS-VEVYKLDEDGREQI 59
Query: 332 SEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRL 391
+LG GD GE L + TVRALT+ E L D FRRL
Sbjct: 60 VGFLGPGDLFGELALL---------GNGPRSATVRALTDSELLVLPRSD-------FRRL 103
Query: 392 HSKQLRHTFRFY 403
+ R
Sbjct: 104 LQEYPELARRLL 115
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In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
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| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
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| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
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| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
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| >gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 501 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.69 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.62 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.58 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.52 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.49 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.45 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.44 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.43 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.42 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.35 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.34 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.34 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.33 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.26 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.23 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.22 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.2 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.15 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 98.93 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 98.88 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 98.83 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.83 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.61 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.55 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 98.33 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 98.27 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.15 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 98.05 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.83 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.82 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 97.5 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.47 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 97.08 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.96 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 96.72 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 96.53 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 95.82 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 94.31 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 94.27 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 92.61 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 89.44 | |
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 87.09 | |
| TIGR03037 | 159 | anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase | 84.51 | |
| COG4709 | 195 | Predicted membrane protein [Function unknown] | 83.18 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=652.32 Aligned_cols=447 Identities=55% Similarity=0.904 Sum_probs=395.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccCCCC
Q 010787 10 KNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCKMDNG 89 (501)
Q Consensus 10 ~~~l~~~~~~~~l~Rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~~ 89 (501)
...|..+++++|||||+|++++++.+++..+++.+++|++++++|++|++++||+||+||++|++++++||.+.
T Consensus 194 ~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------ 267 (727)
T KOG0498|consen 194 STILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------ 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------
Confidence 34799999999999999999999999999999999999998899999999999999999999999999998552
Q ss_pred cccccCCCCCCCccccccCCCCCCCCCCcccchhhhhhccccccCCchhhHHHHHHHHhhhhhccccCCccccCchhhHH
Q 010787 90 CKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEIC 169 (501)
Q Consensus 90 c~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~ 169 (501)
+|+...+...+.++..|+||+|. ++.+|++|+||+++||||+||||++|+|..|++
T Consensus 268 ------------tw~~~l~~~~~~~~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~i 323 (727)
T KOG0498|consen 268 ------------TWLGSLGRLLSCYNLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKI 323 (727)
T ss_pred ------------ccccccccccccCcccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHH
Confidence 57665321112233447788764 566999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhh
Q 010787 170 FAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCN 249 (501)
Q Consensus 170 ~~i~~~i~g~~~fa~iig~i~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~ 249 (501)
|+|++|++|.++||++||||+++++..+.+.++|+.+++++++||++++||++||+||++|++|+|..++|+|++++|++
T Consensus 324 Fsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~ 403 (727)
T KOG0498|consen 324 FSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQS 403 (727)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeee
Q 010787 250 LPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGF 329 (501)
Q Consensus 250 Lp~~Lr~~i~~~~~~~~l~~i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~ 329 (501)
||++||++|++|+|.++++++|+|+++|++++++|+.++++..|+|||+|++|||+.++||||.+|.+++...++|.+
T Consensus 404 LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~-- 481 (727)
T KOG0498|consen 404 LPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF-- 481 (727)
T ss_pred CCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887743
Q ss_pred eeeeEeCCCCeechhhhhhhcC-CCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 010787 330 FNSEYLGAGDFCGEELLTWALD-PQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWR 408 (501)
Q Consensus 330 ~~~~~l~~G~~fGe~~l~~~~~-~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~~ 408 (501)
.++..+++||+|||.-+.|+.+ |+ ++||+|++.|+++.|++++|.+++++||+++++.+++++++|+++|+
T Consensus 482 ~~~~~L~~Gd~~GeEl~~~~~~~p~--------t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r 553 (727)
T KOG0498|consen 482 FVVAILGPGDFFGEELLTWCLDLPQ--------TRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWR 553 (727)
T ss_pred EEEEEecCCCccchHHHHHHhcCCC--------CceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhh
Confidence 3479999999999766667663 32 89999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHhHHHHHHHHhHhHHHHhhcCCCCCCcchhhhhhHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 010787 409 SWAACFIQAAWRRYSKKKLEESLRAEENRLQDALAKAGGSSPSLGATIYASRFAANALRLIRRNSTRKTRVPERVPPMLL 488 (501)
Q Consensus 409 ~~~~~~~q~~~~~~~~r~~~~~l~~aeery~~~~~~~~~~~~~~~~~~~As~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (501)
+|+++.+|.+|+++.+|+....+...++. ...-...++..+.+.....|++++++..+.++... .+.++....+.+
T Consensus 554 ~~aa~~iq~a~r~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 629 (727)
T KOG0498|consen 554 TWAACFIQAAWRRHIKRKGEEELALEEEE-SAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAA---SRGSSDCALLLL 629 (727)
T ss_pred hhhhhhHHHHHHHHHHhhccchhhhhcch-hhhccccccchhhhhcccccccccccCCCcccccc---ccCccccccccC
Confidence 99999999999999998877655553221 11112555666778888899999999888776542 233344445777
Q ss_pred CCCCCCCCCCCC
Q 010787 489 QKPAEPDFTVEE 500 (501)
Q Consensus 489 ~~p~~~~~~~~~ 500 (501)
|||.+|||+.++
T Consensus 630 ~~~~~p~f~~~~ 641 (727)
T KOG0498|consen 630 QKPADPDFSDAE 641 (727)
T ss_pred CCCCCCCccccc
Confidence 999999999764
|
|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase | Back alignment and domain information |
|---|
| >COG4709 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 501 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 5e-52 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 4e-13 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 4e-13 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 1e-12 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 6e-12 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 6e-12 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 6e-12 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 7e-12 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 7e-12 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 1e-11 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 1e-10 | ||
| 1q43_A | 207 | Hcn2i 443-640 In The Presence Of Camp, Selenomethio | 3e-10 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 4e-10 | ||
| 3ukn_A | 212 | Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN | 2e-09 | ||
| 3beh_A | 355 | Structure Of A Bacterial Cyclic Nucleotide Regulate | 4e-05 | ||
| 4f8a_A | 160 | Cyclic Nucleotide Binding-Homology Domain From Mous | 2e-04 | ||
| 3clp_A | 140 | M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 L | 2e-04 | ||
| 1u12_A | 138 | M. Loti Cyclic Nucleotide Binding Domain Mutant Len | 2e-04 | ||
| 1vp6_A | 138 | M.Loti Ion Channel Cylic Nucleotide Binding Domain | 2e-04 | ||
| 3cl1_A | 140 | M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gm | 2e-04 | ||
| 2k0g_A | 142 | Solution Structure Of A Bacterial Cyclic Nucleotide | 2e-04 | ||
| 1rl3_A | 288 | Crystal Structure Of Camp-free R1a Subunit Of Pka L | 6e-04 | ||
| 1ne4_A | 283 | Crystal Structure Of Rp-Camp Binding R1a Subunit Of | 6e-04 | ||
| 2qcs_B | 291 | A Complex Structure Between The Catalytic And Regul | 6e-04 | ||
| 3co2_A | 140 | Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domai | 6e-04 | ||
| 3shr_A | 299 | Crystal Structure Of Cgmp-Dependent Protein Kinase | 9e-04 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 | Back alignment and structure |
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
| >pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 | Back alignment and structure |
| >pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 | Back alignment and structure |
| >pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1 Potassium Channel Length = 160 | Back alignment and structure |
| >pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 Length = 140 | Back alignment and structure |
| >pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant Length = 138 | Back alignment and structure |
| >pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain Length = 138 | Back alignment and structure |
| >pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound Length = 140 | Back alignment and structure |
| >pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide- Activated K+ Channel Binding Domain In Complex With Camp Length = 142 | Back alignment and structure |
| >pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka Length = 288 | Back alignment and structure |
| >pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp- Dependent Protein Kinase Length = 283 | Back alignment and structure |
| >pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 291 | Back alignment and structure |
| >pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain Mutant Length = 140 | Back alignment and structure |
| >pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals Novel Site Of Interchain Communication Length = 299 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 8e-80
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 17/213 (7%)
Query: 193 LQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPK 252
Q +R + +D + ++ LP L +R+ Q W G+D LL + P
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 253 DLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFI 312
+LR DI HL LL ++PLFE L +L +K +++R+GD + + F+
Sbjct: 64 ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
Query: 313 MRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVE 372
G + + N LG GD G + LT + + V+ALT +
Sbjct: 123 CSGSMEVLKDNTVLA------ILGKGDLIGSDSLTKEQVIK-------TNANVKALTYCD 169
Query: 373 AFALMADDLKFVAS---QFRRLHSKQLRHTFRF 402
+ L+ V ++ + +++H +
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202 | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 501 | |||
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 100.0 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 100.0 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.98 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.97 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.83 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.83 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.81 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.79 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.78 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.78 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.77 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.77 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.76 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.76 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.76 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.76 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.76 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.75 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.74 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.74 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.73 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.72 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.72 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.71 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.7 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.7 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.7 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.69 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.68 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.66 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.66 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.65 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.65 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.64 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.63 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.63 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.62 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.62 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.61 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.6 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.59 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.59 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.58 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.57 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.57 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.57 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.57 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.55 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.55 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.53 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.5 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.48 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.46 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.45 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.44 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.39 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.39 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.37 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.37 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.35 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.34 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 99.29 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.26 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 99.18 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 99.1 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 99.08 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 99.0 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.91 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.82 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.81 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.8 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.72 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.72 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.65 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 98.51 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 98.46 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 96.2 | |
| 3rns_A | 227 | Cupin 2 conserved barrel domain protein; structura | 83.14 | |
| 3fjs_A | 114 | Uncharacterized protein with RMLC-like cupin fold; | 80.56 | |
| 2ozj_A | 114 | Cupin 2, conserved barrel; cupin superfamily prote | 80.47 |
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=258.71 Aligned_cols=204 Identities=24% Similarity=0.380 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhhccHHHHHHHHHHHHHHHhcc
Q 010787 190 QTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMR 269 (501)
Q Consensus 190 ~~il~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~ 269 (501)
++|+++++.+..+|+++++.+++||+.+++|++||.||++||+|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468889999999999999999999999999999999999999999998899999999999999999999999998887 8
Q ss_pred ccccccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhh
Q 010787 270 VPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWA 349 (501)
Q Consensus 270 i~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~ 349 (501)
+|+|++++++++..++..++.+.|.|||+|+++||+++.+|||.+|.|+++.. | . .+..+++|++||+.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~--~--~~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD--N--T--VLAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS--S--C--EEEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC--C--e--EEEEecCCCCcCcHHhc--
Confidence 99999999999999999999999999999999999999999999999999863 3 2 25899999999999884
Q ss_pred cCCCCCCCCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 010787 350 LDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQW 407 (501)
Q Consensus 350 ~~~~~~~~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l~~~~~~~s~~~ 407 (501)
.+.. +.++++++|.++|+++.|++++|.++++++|++....++...+..+...
T Consensus 152 -~~~~----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~l 204 (212)
T 3ukn_A 152 -KEQV----IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNL 204 (212)
T ss_dssp -SSSC----CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEEC
T ss_pred -cCCC----CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccc
Confidence 3320 0248999999999999999999999999999988877777665554433
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} | Back alignment and structure |
|---|
| >3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
| >2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 501 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 3e-27 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 7e-17 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 2e-13 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 4e-11 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 2e-09 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 4e-09 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 9e-09 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 2e-08 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 1e-05 | |
| d1i5za2 | 132 | b.82.3.2 (A:6-137) Catabolite gene activator prote | 3e-05 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 3e-05 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 7e-05 | |
| d2oz6a2 | 134 | b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei | 2e-04 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 4e-04 | |
| d1ft9a2 | 132 | b.82.3.1 (A:2-133) CO-sensing protein CooA, N-term | 0.002 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 104 bits (259), Expect = 3e-27
Identities = 93/128 (72%), Positives = 114/128 (89%)
Query: 265 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG 324
+ + RVPLFE MDE+LLDA+C+RLKP L+TE+SY+VREGDPV+EMLFI+RG+L ++TT+G
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65
Query: 325 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFV 384
GR+GF+N L GDFCG+ELLTWALDP+S SNLP STRTV+ALTEVEAFAL+AD+LKFV
Sbjct: 66 GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
Query: 385 ASQFRRLH 392
ASQFRR
Sbjct: 126 ASQFRRSG 133
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Length = 132 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 501 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.84 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.81 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.79 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.77 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.77 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.76 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.74 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.74 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.71 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.71 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.68 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.67 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.65 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.62 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.59 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.48 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.47 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.45 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.37 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 99.04 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 97.29 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 90.51 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 87.67 | |
| d2b8ma1 | 108 | Hypothetical protein MJ0764 {Archaeon Methanococcu | 81.75 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.5e-31 Score=241.20 Aligned_cols=184 Identities=27% Similarity=0.446 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccccC
Q 010787 197 TTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKM 276 (501)
Q Consensus 197 ~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~l 276 (501)
++...+|++++..+++||+.+++|++|+.||++||+|.|.. ++.+++++++.||++|+.++..+++.++++++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 35678899999999999999999999999999999999975 67899999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeEEEEEEeCCceeeeeeeeEeCCCCeechhhhhhhcCCCCCC
Q 010787 277 DEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSS 356 (501)
Q Consensus 277 ~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~ 356 (501)
++.++..|+..+++..|.||++|+++||+++.+|||.+|.|.++..++ . +..+++|++||+.+++ .+.+
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~-~-----~~~l~~G~~fGe~~~~---~~~~-- 148 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-K-----EMKLSDGSYFGEICLL---TRGR-- 148 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CC-C-----EEEECTTCEECHHHHH---HCSB--
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCc-c-----eeeeccceeeeeeecc---CCCc--
Confidence 999999999999999999999999999999999999999999976433 2 3679999999999985 3332
Q ss_pred CCCCcceEEEEcccceeeEecHHHHHHHHHHhHHHHHHHH
Q 010787 357 NLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQL 396 (501)
Q Consensus 357 ~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~~~~l 396 (501)
++++++|.++|+++.|++++|.++++++|++..+..
T Consensus 149 ----~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~ 184 (193)
T d1q3ea_ 149 ----RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 184 (193)
T ss_dssp ----CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHH
T ss_pred ----ccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 489999999999999999999999999998665433
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
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| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
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| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
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| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
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| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
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| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
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| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
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| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
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| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
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| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
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| >d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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