Citrus Sinensis ID: 010799

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-
Protein Sequence
MAAEATIVPVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEINDVSPKLLNAVSQVQDITDTFRIENCKRVYLGVISLRSSTVQARFRKKIKELVSGIREESEKMLLEISGKITSAENVDSAKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRLKA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHccccccccccEEEEEEccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEEccccHHHHHHHHHcccccccccEEEEHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHccccccccccccccccEEccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHccccccccccEEEEEcccHHHHHHccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHccEccccccHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHccHHHHccccEEEEEEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccccccEEEEEEccHHHHHHccccccccHHccccHHHHHHHHHHHccccccccccccccccccHcHHHccccccHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHccHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccccccccEEEEEEccHHHHHHcccccccEccccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAAEATIVPVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEINDVSPKLLNAVSQVQDITDTFRIENCKRVYLGVISLRSSTVQARFRKKIKELVSGIREESEKMLLEISGKItsaenvdsakktGILDLNKEVNKLADFLIRSHSSLFTISVVDVAgsvmttdlwksyecetvkeyfqcrawvpvpeelERRELVTDILKQvggskvekqldpQKKLRKLFTENRYLVVIINARTPDIWDILKylfpnssngsrVILSFQEADAARCRnmsffggessfkpkYIAYAAseddggnddralpkqvpdeeiSEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYEssytkknfpcrawanvyvsqdfdmRSVFADILRQLTQdevdeesslddleseFTGILYEKRYLVVLddvhspgawydlkrifspqaspigsrVILITREAyvarsfspsiflhqlrplneeesGKLFQRRLKA
Flexible Loop (DISEMBL)
maaeativpvvrilkelsrekfedeglvaqlinsseeLEKVRKSWEEKeindvspkllnaVSQVQDITDTFRIENCKRVYLGVislrsstvqarfRKKIKELVSGIREESEKMLLEISgkitsaenvdsakkTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILkqvggskvekqldpqkklrklftenrYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSffggessfkPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVagaagsgktALVKTIYESsytkknfpcrAWANVYVSQDFDMRSVFADILRQLTqdevdeesslddlESEFTGILYEKRYLVVLDDVHSPGAWYDLkrifspqaspigSRVILITREAYVARSFSpsiflhqlrplneeesgklfqrrlka
Low Complexity Region (SEG)
MAAEATIVPVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEINDVSPKLLNAVSQVQDITDTFRIENCKRVYLGVISLRSSTVQARFRKKIKELVSGIREESEKMLLEISGKITSAENVDSAKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQdevdeesslddleseFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRLKA
Disordered region (IsUnstruct)
*****TIVPVVRILKELSREKFEDEGLVAQLI********************VSPKLLNAVSQVQDITDTFRIENCKRVYLGVISLRSSTVQARFRKKIKELVSGI*******LLEI**************KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGG***********KLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAY***************************TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT************LESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQL******************
Disordered Region (DISOPRED)
MAAEATIVPVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEINDVSPKLLNAVSQVQDITDTFRIENCKRVYLGVISLRSSTVQARFRKKIKELVS******************************ILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV************KKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR****************ESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRLKA
Disordered Region (DISEMBL)
MAAEATIVPVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEINDVSPKLLNAVSQVQDITDTFRIENCKRVYLGVISLRSSTVQARFRKKIKELVSGIREESEKMLLEISGKITSAENVDSAKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQD**********LESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRLKA
Disordered Region (DISPRO)
*AAEATIVPVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEINDVSPKLLNAVSQVQDITDTFRIENCKRVYLGVISLRSSTVQARFRKKIKELVSGIREESEKMLL************D*AK*TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAYAASEDDGGN*********PDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRLKA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAEATIVPVVRILKELSREKFEDEGLxxxxxxxxxxxxxxxxxxxxxEINDVSPKLLNAVSQVQDITDTFRIENCKRVYLGVISLRSSTVQARFRKKIKELVSGIREESEKMLLEISGKITSAENVDSAKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIxxxxxxxxxxxxxxxxxxxxxFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRLKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	501	2.2.26 [Sep-21-2011]
Q9M667	835	Disease resistance protei	yes	no	0.385	0.231	0.354	9e-22
Q9STE7	847	Putative disease resistan	no	no	0.339	0.200	0.384	2e-20
Q9SX38	857	Putative disease resistan	no	no	0.335	0.196	0.352	3e-16
Q9STE5	847	Putative disease resistan	no	no	0.307	0.181	0.35	7e-15
Q9LQ54	870	Probable disease resistan	no	no	0.335	0.193	0.293	5e-14
P0DI16	1017	Probable disease resistan	no	no	0.411	0.202	0.285	6e-13
F4IBE4	1017	Probable disease resistan	no	no	0.411	0.202	0.285	6e-13
P0DI18	1049	Probable disease resistan	no	no	0.409	0.195	0.288	9e-13
P0DI17	1049	Probable disease resistan	no	no	0.409	0.195	0.288	9e-13
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.287	0.159	0.322	2e-12

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score =  105 bits (262), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 104/203 (51%), Gaps = 10/203 (4%)

Query: 302 GGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKN-FLISVAGAAGSGKT 360
           GGN      +Q+      ++   VV +E+D   L +  L+  +KN F+IS+ G  G GKT
Sbjct: 140 GGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFIISIFGMGGLGKT 199

Query: 361 ALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSL-----D 415
           AL + +Y S   K+ F  RAW   YVSQ++    +   I+R L     +E   +     +
Sbjct: 200 ALARKLYNSRDVKERFEYRAWT--YVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEE 257

Query: 416 DLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475
           +LE    G+L  K+YLVV+DD+    AW  LKR         GSRVI+ TR   VA    
Sbjct: 258 ELEVYLYGLLEGKKYLVVVDDIWEREAWDSLKRALPCNHE--GSRVIITTRIKAVAEGVD 315

Query: 476 PSIFLHQLRPLNEEESGKLFQRR 498
              + H+LR L  EES +LF++R
Sbjct: 316 GRFYAHKLRFLTFEESWELFEQR 338

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 101/182 (55%), Gaps = 12/182 (6%)

Query: 325 VVSMEND--ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWA 382
           VV +E+D  IL +  L+ N  DK+++IS+ G  G GKTAL + +Y S   K+ F CRAW 
Sbjct: 162 VVGLEDDVKILLVKLLSDNEKDKSYIISIFGMGGLGKTALARKLYNSGDVKRRFDCRAWT 221

Query: 383 NVYVSQDFDMRSVFADILRQLTQDEVDEESSL------DDLESEFTGILYEKRYLVVLDD 436
             YVSQ++  R +   I+R L     +E   +      ++LE    G+L  K Y+VV+DD
Sbjct: 222 --YVSQEYKTRDILIRIIRSLGIVSAEEMEKIKMFEEDEELEVYLYGLLEGKNYMVVVDD 279

Query: 437 VHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQ 496
           V  P AW  LKR         GS+VI+ TR   +A     +++ H+LR L  EES  LF+
Sbjct: 280 VWDPDAWESLKRALPCDHR--GSKVIITTRIRAIAEGVEGTVYAHKLRFLTFEESWTLFE 337

Query: 497 RR 498
           R+
Sbjct: 338 RK 339

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 8/176 (4%)

Query: 325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANV 384
           +V +E  + KL    ++  +K  + S+ G  G GKT L K I+     +++F   AW  V
Sbjct: 164 LVGLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGKTTLAKQIFHHHKVRRHFDRFAW--V 221

Query: 385 YVSQDFDMRSVFADILRQLT-QDEVDEESSLDD--LESEFTGILYEKRYLVVLDDVHSPG 441
           YVSQD   R V+ DI   L+ +DE     SL D  L  E    L   + L+VLDD+    
Sbjct: 222 YVSQDCRRRHVWQDIFLNLSYKDENQRILSLRDEQLGEELHRFLKRNKCLIVLDDIWGKD 281

Query: 442 AWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
           AW  LK +F  +    GS +IL TR   VA    P   LH+ + L  EES +L ++
Sbjct: 282 AWDCLKHVFPHET---GSEIILTTRNKEVALYADPRGVLHEPQLLTCEESWELLEK 334

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE5|R13L2_ARATH Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 6/160 (3%)

Query: 341 NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL 400
           +  +K ++IS+ G  G GKT+L + ++ SS  K++F  R W N  VS + + R +   I+
Sbjct: 179 DGDNKIYMISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWTN--VSGECNTRDILMRII 236

Query: 401 RQL--TQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIG 458
             L  T +   E+ +  +LE     IL EKRYLVV+DD+    A   LKR  +   S  G
Sbjct: 237 SSLEETSEGELEKMAQQELEVYLHDILQEKRYLVVVDDIWESEALESLKR--ALPCSYQG 294

Query: 459 SRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQRR 498
           SRVI+ T    VA      ++ H +R L  +ES  LF+++
Sbjct: 295 SRVIITTSIRVVAEGRDKRVYTHNIRFLTFKESWNLFEKK 334

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ54|DRL12_ARATH Probable disease resistance protein At1g59620 OS=Arabidopsis thaliana GN=At1g59620 PE=2 SV=3

 Score = 79.7 bits (195), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 9/177 (5%)

Query: 323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWA 382
           + +V +E ++ KL    +   D + ++S+ G  G GKT L + ++     K +F   AW 
Sbjct: 137 SVLVGLEENVKKLVGHLVEVEDSSQVVSITGMGGIGKTTLARQVFNHETVKSHFAQLAW- 195

Query: 383 NVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGA 442
            V VSQ F  + V+  ILR++  + +  E + D+L+ +   +L  ++ L+VLDD+     
Sbjct: 196 -VCVSQQFTRKYVWQTILRKVGPEYIKLEMTEDELQEKLFRLLGTRKALIVLDDIWREED 254

Query: 443 WYDLKRIFSPQASPIGS--RVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
           W  ++ IF     P+G   +V+L +R   VA   +P+ F+ +   L  EES  +F+R
Sbjct: 255 WDMIEPIF-----PLGKGWKVLLTSRNEGVALRANPNGFIFKPDCLTPEESWTIFRR 306

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI16|DRL44_ARATH Probable disease resistance protein RDL5 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 18/224 (8%)

Query: 277 RNMSFFGGESSFKPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLA 336
           R+M  FG + +     I     +   G+  R + ++   ++ S+     V +E ++ KL 
Sbjct: 124 RDMQSFGVQQA-----IVDGGYKQPQGDKQREMRQKFSKDDDSD----FVGLEANVKKLV 174

Query: 337 KLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVF 396
              ++ ++   ++S+ G  G GKT L K ++     K  F   +W  V VSQDF   +V+
Sbjct: 175 GYLVDEANVQ-VVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSW--VCVSQDFTRMNVW 231

Query: 397 ADILRQLTQDEVDE---ESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQ 453
             ILR L   E ++   E + D L+ E   +L   + L+VLDD+     W  +K IF P 
Sbjct: 232 QKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPPT 291

Query: 454 ASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
               G +V+L +R   VA   + S    +   L  E+S  LFQR
Sbjct: 292 K---GWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQR 332

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IBE4|DRL10_ARATH Probable disease resistance protein RF45 OS=Arabidopsis thaliana GN=RF45 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 18/224 (8%)

Query: 277 RNMSFFGGESSFKPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLA 336
           R+M  FG + +     I     +   G+  R + ++   ++ S+     V +E ++ KL 
Sbjct: 124 RDMQSFGVQQA-----IVDGGYKQPQGDKQREMRQKFSKDDDSD----FVGLEANVKKLV 174

Query: 337 KLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVF 396
              ++ ++   ++S+ G  G GKT L K ++     K  F   +W  V VSQDF   +V+
Sbjct: 175 GYLVDEANVQ-VVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSW--VCVSQDFTRMNVW 231

Query: 397 ADILRQLTQDEVDE---ESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQ 453
             ILR L   E ++   E + D L+ E   +L   + L+VLDD+     W  +K IF P 
Sbjct: 232 QKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPPT 291

Query: 454 ASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
               G +V+L +R   VA   + S    +   L  E+S  LFQR
Sbjct: 292 K---GWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQR 332

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 20/225 (8%)

Query: 277 RNMSFFGGESSFKPKYIAYAASEDDGGNDDRAL-PKQVPDEEISEEVTAVVSMENDILKL 335
           R+M  FG + +     I     +   G+  R + P+   D++     +  V +E ++ KL
Sbjct: 124 RDMQSFGVQQA-----IVDGGYKQPQGDKQREMRPRFSKDDD-----SDFVGLEANVKKL 173

Query: 336 AKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV 395
               ++ ++   ++S+ G  G GKT L K ++     K  F   +W  V VSQDF   +V
Sbjct: 174 VGYLVDEANVQ-VVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSW--VCVSQDFTRMNV 230

Query: 396 FADILRQLTQDEVDE---ESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSP 452
           +  ILR L   E ++   E + D L+ E   +L   + L+VLDD+     W  +K IF P
Sbjct: 231 WQKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPP 290

Query: 453 QASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
                G +V+L +R   VA   + S    +   L  E+S  LFQR
Sbjct: 291 TK---GWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQR 332

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 20/225 (8%)

Query: 277 RNMSFFGGESSFKPKYIAYAASEDDGGNDDRAL-PKQVPDEEISEEVTAVVSMENDILKL 335
           R+M  FG + +     I     +   G+  R + P+   D++     +  V +E ++ KL
Sbjct: 124 RDMQSFGVQQA-----IVDGGYKQPQGDKQREMRPRFSKDDD-----SDFVGLEANVKKL 173

Query: 336 AKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV 395
               ++ ++   ++S+ G  G GKT L K ++     K  F   +W  V VSQDF   +V
Sbjct: 174 VGYLVDEANVQ-VVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSW--VCVSQDFTRMNV 230

Query: 396 FADILRQLTQDEVDE---ESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSP 452
           +  ILR L   E ++   E + D L+ E   +L   + L+VLDD+     W  +K IF P
Sbjct: 231 WQKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPP 290

Query: 453 QASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
                G +V+L +R   VA   + S    +   L  E+S  LFQR
Sbjct: 291 TK---GWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQR 332

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 8/152 (5%)

Query: 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE 407
           ++S++G  G GKT L + I+     +++F   AW  V VSQ F  + V+  IL++L   +
Sbjct: 185 VVSISGMGGIGKTTLARQIFHHDLVRRHFDGFAW--VCVSQQFTQKHVWQRILQELRPHD 242

Query: 408 VDEESSLDD--LESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILIT 465
             E   +D+  ++ +   +L   RYLVVLDDV     W  +K +F  +    G +++L +
Sbjct: 243 -GEILQMDEYTIQGKLFQLLETGRYLVVLDDVWKEEDWDRIKEVFPRKR---GWKMLLTS 298

Query: 466 REAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
           R   V     P+    + R LN +ES KLF+R
Sbjct: 299 RNEGVGLHADPTCLSFRARILNPKESWKLFER 330

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
255544065	936	Disease resistance protein RPM1, putativ	0.395	0.211	0.410	2e-27
255544075	884	Disease resistance protein RPM1, putativ	0.357	0.202	0.4	2e-26
357135028	1220	PREDICTED: disease resistance protein RP	0.792	0.325	0.259	2e-21
297819252	829	hypothetical protein ARALYDRAFT_323301 [	0.385	0.232	0.348	2e-21
356538242	912	PREDICTED: disease resistance RPP8-like	0.397	0.218	0.347	8e-21
125562371	585	hypothetical protein OsI_30077 [Oryza sa	0.616	0.528	0.273	9e-21
93211069	842	disease resistance protein RPP13 variant	0.385	0.229	0.359	2e-20
224566960	842	disease resistance protein RPP13 variant	0.385	0.229	0.359	2e-20
46410165	842	disease resistance protein RPP13 variant	0.385	0.229	0.359	2e-20
224566976	830	disease resistance protein RPP13 variant	0.385	0.232	0.354	2e-20

>gi|255544065|ref|XP_002513095.1| Disease resistance protein RPM1, putative [Ricinus communis] gi|223548106|gb|EEF49598.1| Disease resistance protein RPM1, putative [Ricinus communis]

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 9/207 (4%)

Query: 299 EDDGGNDDRALPKQVPD-EEISEEVTAVVSMENDILKLAKLTLNSSDK---NFLISVAGA 354
           E++ G+  R  PK+     +  +E   +V +E+    L +L L+   +   + +I+V GA
Sbjct: 141 EEENGSQSREQPKRWSRIADFLKESYNIVGLEDQRHDLVQLLLSRHGRWLPSIVIAVVGA 200

Query: 355 AGSGKTALVKTIYES-SYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESS 413
           AGSGKT LVK IY      K++F C AW NV  S++F  R V   ILRQ+++   +E  S
Sbjct: 201 AGSGKTTLVKFIYNRVQEVKQHFECCAWVNV--SEEFQERDVLISILRQISEVTEEETLS 258

Query: 414 LDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS 473
           L+ L       L  + YL+VLDD+HS  AW  LK  FS   S +GSRVIL  R   VARS
Sbjct: 259 LEALRIRVKYFLSRRTYLIVLDDIHSRDAWEILKFGFS--TSVMGSRVILTMRSIEVARS 316

Query: 474 FSPSIFLHQLRPLNEEESGKLFQRRLK 500
            +P I L Q+RPLN +ES +LF ++L+
Sbjct: 317 LTPWISLFQIRPLNPQESWQLFLQKLR 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544075|ref|XP_002513100.1| Disease resistance protein RPM1, putative [Ricinus communis] gi|223548111|gb|EEF49603.1| Disease resistance protein RPM1, putative [Ricinus communis]

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 108/185 (58%), Gaps = 6/185 (3%)

Query: 317 EISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF 376
           E SE +  ++   +D   L +L ++S    FLISV G  GSGKT LVK++Y+S   K++F
Sbjct: 150 EESEAIVGLIDQRDD---LVQLVVSSRLSPFLISVVGEGGSGKTTLVKSMYDSVEVKQHF 206

Query: 377 PCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDD 436
            C AW  VYVS+ F++R V   ILRQ+T  + +E+  L+ L          K+YL+VLDD
Sbjct: 207 VCCAW--VYVSEKFEVRDVLTGILRQVTVVKDEEKLPLESLLKRVRDFFLWKKYLIVLDD 264

Query: 437 VHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQ 496
           + SP  W  +K  F P ++    RVIL   +  VAR+  P I L Q+R +N EES  LF 
Sbjct: 265 IPSPDVWSTIKYAF-PNSARAARRVILTLPKIEVARAIDPRISLFQIRRMNHEESWALFL 323

Query: 497 RRLKA 501
           ++++ 
Sbjct: 324 KKVRT 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357135028|ref|XP_003569114.1| PREDICTED: disease resistance protein RPM1-like [Brachypodium distachyon]

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 216/489 (44%), Gaps = 92/489 (18%)

Query: 94  RFRKKIKELVSGIREESEK----MLLEISGK----ITSAE--NVDSAKKTGILDLNKEVN 143
           R  K++KEL + + + S++     L++ SG      T+AE  ++ SA   GI +  +   
Sbjct: 107 RVAKQMKELRANVEDVSQRNTRYSLIKGSGSKAATYTAAEQSSITSAALFGIDEARRAAK 166

Query: 144 K------LADFLIRSHSSLFTISVVDVAGSV-MTTDLWKSYECETVKEYFQCRAWVPVPE 196
           +      L   +    ++L  I+V   +G +  T+ + K+YE   ++  F CRAWV +  
Sbjct: 167 QEKSQVDLVQMINEEENNLRVIAVWGTSGGLGQTSIVRKAYENPDIESKFSCRAWVRLMH 226

Query: 197 ELERRELVTDILKQ---VGGSKV--EKQLDPQK---KLRKLFTENRYLVVIINARTPDIW 248
             + ++ V  +++Q    GG  V   K+   Q+   K  +   E RYL+VI +  T + W
Sbjct: 227 PFDPKDFVQSMVEQFNAAGGVNVLLRKKKTVQELTNKFEQYVNEKRYLIVINDLSTIEEW 286

Query: 249 DILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAYAASE------DDG 302
           D +K  FPN++ GSR+I+S  + + A     S   G+ S   +   ++A +      D G
Sbjct: 287 DRVKKCFPNNNMGSRIIVSTTQVEVA-----SLCAGQGSVASELKQFSAGQNIYAFHDKG 341

Query: 303 GNDDRALPKQ----------------VPDEEISEEVTA------------------VVSM 328
             D   L  +                VP  EISEE T                   +V  
Sbjct: 342 SQDATDLINEGSSSNTASTSTANKSTVPTCEISEENTVKKSLTRIRTMVAALEESHLVGR 401

Query: 329 ENDILKLAKLTLNSSDKNF-LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVS 387
           E +  ++ KL    +   F +I+V G  G GKT LVK IY+S      F  RA   V V 
Sbjct: 402 EKEKSEIIKLVTGQATGQFEVITVWGMGGLGKTTLVKDIYQSQELSDIFDNRAC--VTVM 459

Query: 388 QDFDMRSVFADILRQLTQDEVDEES---------------SLDDLESEFTGILYEKRYLV 432
           + F++  +   +  QL ++  +++                SL +L  E   +   KR L+
Sbjct: 460 RPFNLEELLRSLFMQLDRESSEKKDVVGLMSSTKNTLLLMSLAELIKELAKLFQTKRCLI 519

Query: 433 VLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSI--FLHQLRPLNEEE 490
           VLDDV S   W  ++ IF      I  R+I+ TRE  +A+         +++L+ L  ++
Sbjct: 520 VLDDVLSTAEWDRIEPIFHEMRKTI--RIIVTTREESIAKHCCSQKQENIYKLKDLEYKD 577

Query: 491 SGKLFQRRL 499
           +  LF +++
Sbjct: 578 AHDLFTKKV 586

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819252|ref|XP_002877509.1| hypothetical protein ARALYDRAFT_323301 [Arabidopsis lyrata subsp. lyrata] gi|297323347|gb|EFH53768.1| hypothetical protein ARALYDRAFT_323301 [Arabidopsis lyrata subsp. lyrata]

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 11/204 (5%)

Query: 302 GGNDDRALPKQVPDEEISEEVTAVVSMEND--ILKLAKLTLNSSDKNFLISVAGAAGSGK 359
           GGN      +Q+      +    V+ +E+D  IL +  L  N  DK  +IS+ G  G GK
Sbjct: 140 GGNISSLRVRQLGRARSVDHEELVIGLEDDAKILLVKLLGDNKEDKRHIISIFGMGGLGK 199

Query: 360 TALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSL----- 414
           TAL + +Y S   K+ F CRAW   YVSQ++    +   I+R L     +E   +     
Sbjct: 200 TALARKLYNSGDVKRRFDCRAWT--YVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAE 257

Query: 415 DDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474
           ++LE    G+L  K+YLVV+DD+    AW  LKR         GSRVI+ TR   +A   
Sbjct: 258 EELEVYLHGLLEGKKYLVVVDDIWEQEAWESLKRALPYNHG--GSRVIITTRIRALAEGV 315

Query: 475 SPSIFLHQLRPLNEEESGKLFQRR 498
             +++ H+LR L  EES  LF+++
Sbjct: 316 DGTVYAHKLRFLTFEESWTLFEQK 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538242|ref|XP_003537613.1| PREDICTED: disease resistance RPP8-like protein 3-like [Glycine max]

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 8/207 (3%)

Query: 292 YIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISV 351
           Y     + DDG N +  L         SEE   V+ +E+D+  L    L       ++S+
Sbjct: 129 YGVVVMTRDDGNNSNERLRHWRQPSPYSEE-EYVIELEDDMGLLFTQLLAVEPTPHVVSI 187

Query: 352 AGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ---LTQDEV 408
            G  G GKT L K +Y  +    +F C+AW  VYVS+++  R V   IL+    LT+D +
Sbjct: 188 VGMGGLGKTTLAKKLYNHARITNHFECKAW--VYVSKEYRRRDVLQGILKDVDALTRDGM 245

Query: 409 DEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREA 468
           +     ++L ++   +L EKRYLVVLDD+     W  LK  F P+   +GS+++L TR  
Sbjct: 246 ERRIPEEELVNKLRNVLSEKRYLVVLDDIWGMEVWDGLKSAF-PRGK-MGSKILLTTRNW 303

Query: 469 YVARSFSPSIFLHQLRPLNEEESGKLF 495
            VA         HQLRPL E+ES +L 
Sbjct: 304 DVALHVDACSNPHQLRPLTEDESFRLL 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125562371|gb|EAZ07819.1| hypothetical protein OsI_30077 [Oryza sativa Indica Group]

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 167/384 (43%), Gaps = 75/384 (19%)

Query: 180 ETVKEYFQCRAWVPVPEELERRELVTDILKQV----------------GGSKVEKQLDPQ 223
           E +K  F+C AWV +    +  E +  +++Q                  G  V  +++ Q
Sbjct: 212 EKLKGQFECHAWVRLMHSFDANEFMGSLVRQFKANSHEGTGKTPQGTPSGVSVLNEMEAQ 271

Query: 224 -----KKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC-- 276
                       T N YLVV+    T + WD +K   PN+ NGSRV++  Q+A+ A C  
Sbjct: 272 NYNLLHDFTGYVTNNNYLVVLNGLSTIEEWDWIKTYLPNNHNGSRVLVYTQQAEVASCCT 331

Query: 277 ---RNMSFFGGESSF-KPKYIAYAASEDDGGNDDRALPKQ------------VPDEEISE 320
                +S    E SF KP Y+ Y        N D  LP+                +E++ 
Sbjct: 332 DDPYKVSEIQHEGSFAKPLYVFYKEVVSQSVNSD--LPESSSRPFLNRDSNTAAVKELTR 389

Query: 321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-NFPCR 379
             T ++    +   + KL  + +    +ISV G  G GKT LVK+IY+SS  +K  F  R
Sbjct: 390 SGTQLIGRGKEKDDVIKLLSDCNPIRQVISVWGMGGIGKTTLVKSIYQSSDLEKLGFERR 449

Query: 380 AWANVYVSQDFDMRSVFADILRQLTQDE------------------VDEESSLDDLESEF 421
           AW  V V + F +  +   + ++L +D                   +  E  +D L+ + 
Sbjct: 450 AW--VTVLRPFQLTELLRSLAQRLVKDSPGKKVESIPGLARSGLSTMGSEELIDKLKQDL 507

Query: 422 TGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPI---GSRVILITREAYVARSFSPS- 477
           TG    K+YL+VLDD+ +   W  + R       PI   GSR+IL TR   VA+  S   
Sbjct: 508 TG----KKYLIVLDDLSTTTEWDSIIRNL-----PINNNGSRIILTTRFKLVAQHCSKKE 558

Query: 478 IFLHQLRPLNEEESGKLFQRRLKA 501
           + +H +  L + ++ +LF  ++ A
Sbjct: 559 MNMHNIEGLTDGDALELFLTKVNA 582

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|93211069|gb|ABF00977.1| disease resistance protein RPP13 variant [Arabidopsis thaliana]

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 302 GGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKN-FLISVAGAAGSGKT 360
           GGN      +Q+      ++   VV +E+D   L +  L   DKN F+IS+ G  G GKT
Sbjct: 140 GGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLYYEDKNRFIISIFGMGGLGKT 199

Query: 361 ALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSL-----D 415
           AL + +Y S   K+ F  RAW   YVSQ++    +   I+R L     +E   +     +
Sbjct: 200 ALARKLYNSGDVKERFKYRAWT--YVSQEYKTGDILMRIIRSLRMTFGEESEKIRKFAEE 257

Query: 416 DLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475
           +LE    G+L  K+YLVV+DD+    AW  LKR         GSRVI+ TR   VA    
Sbjct: 258 ELEVYLHGLLEGKKYLVVVDDIWEREAWESLKRALPCNHE--GSRVIITTRIKAVAEGVD 315

Query: 476 PSIFLHQLRPLNEEESGKLFQRR 498
              + H+LR L  EES +LF++R
Sbjct: 316 GRFYAHKLRFLTFEESWELFEQR 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224566960|gb|ACN56771.1| disease resistance protein RPP13 variant [Arabidopsis thaliana]

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 302 GGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKN-FLISVAGAAGSGKT 360
           GGN      +Q+      ++   VV +E+D   L +  L   DKN F+IS+ G  G GKT
Sbjct: 140 GGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLYYEDKNRFIISIFGMGGLGKT 199

Query: 361 ALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSL-----D 415
           AL + +Y S   K+ F  RAW   YVSQ++    +   I+R L     +E   +     +
Sbjct: 200 ALARKLYNSGDVKERFKYRAWT--YVSQEYKTGDILMRIIRSLRMTFGEESEKIRKFAEE 257

Query: 416 DLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475
           +LE    G+L  K+YLVV+DD+    AW  LKR         GSRVI+ TR   VA    
Sbjct: 258 ELEVYLHGLLEGKKYLVVVDDIWEREAWESLKRALPCNHE--GSRVIITTRIKAVAEGVD 315

Query: 476 PSIFLHQLRPLNEEESGKLFQRR 498
              + H+LR L  EES +LF++R
Sbjct: 316 GRFYAHKLRFLTFEESWELFEQR 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46410165|gb|AAS93942.1| disease resistance protein RPP13 variant [Arabidopsis thaliana] gi|46410167|gb|AAS93943.1| disease resistance protein RPP13 variant [Arabidopsis thaliana] gi|46410169|gb|AAS93944.1| disease resistance protein RPP13 variant [Arabidopsis thaliana] gi|93211063|gb|ABF00974.1| disease resistance protein RPP13 variant [Arabidopsis thaliana] gi|224566940|gb|ACN56761.1| disease resistance protein RPP13 variant [Arabidopsis thaliana]

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 103/203 (50%), Gaps = 10/203 (4%)

Query: 302 GGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKN-FLISVAGAAGSGKT 360
           GGN      +Q+      ++   VV +E+D   L +  L   DKN F+IS+ G  G GKT
Sbjct: 140 GGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLYYEDKNRFIISIFGMGGLGKT 199

Query: 361 ALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSL-----D 415
           AL + +Y S   K+ F  RAW   YVSQ++    +   I+R L     +E   +     +
Sbjct: 200 ALARKLYNSGDVKERFKYRAWT--YVSQEYKTGDILMRIIRSLRMTFGEESEKIRKFAEE 257

Query: 416 DLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475
           +LE    G+L  K+YLVV+DD+    AW  LKR         GSRVI+ TR   VA    
Sbjct: 258 ELEVYLHGLLEGKKYLVVVDDIWEREAWESLKRALPCNHE--GSRVIITTRIKAVAEGVD 315

Query: 476 PSIFLHQLRPLNEEESGKLFQRR 498
              + H+LR L  EES +LF++R
Sbjct: 316 GRFYAHKLRFLTFEESWELFEQR 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224566976|gb|ACN56779.1| disease resistance protein RPP13 variant [Arabidopsis thaliana]

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 104/203 (51%), Gaps = 10/203 (4%)

Query: 302 GGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKN-FLISVAGAAGSGKT 360
           GGN      +Q+      ++   VV +E+D   L +  L+  +KN F+IS+ G  G GKT
Sbjct: 140 GGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFIISIFGMGGLGKT 199

Query: 361 ALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSL-----D 415
           AL + +Y S   K+ F  RAW   YVSQ++    +   I+R L     +E   +     +
Sbjct: 200 ALARKLYNSGDVKERFEYRAWT--YVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFADE 257

Query: 416 DLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475
           +LE    G+L  K+YLVV+DD+    AW  LKR         GSRVI+ TR   VA    
Sbjct: 258 ELEVYLHGLLEGKKYLVVVDDIWEREAWESLKRALPCNHE--GSRVIITTRIKAVAEGLD 315

Query: 476 PSIFLHQLRPLNEEESGKLFQRR 498
              + H+LR L  EES +LF++R
Sbjct: 316 GRFYAHKLRFLTFEESWELFEQR 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.367	0.217	0.365	1.9e-20
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.385	0.231	0.344	6.8e-18
TAIR|locus:2102857	847	AT3G46710 [Arabidopsis thalian	0.367	0.217	0.322	1.3e-13
TAIR|locus:2011982	857	AT1G50180 [Arabidopsis thalian	0.335	0.196	0.318	3.7e-11
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.383	0.207	0.281	8.4e-10
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.375	0.208	0.295	3.7e-09
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.361	0.199	0.291	3.7e-09
TAIR|locus:2197409	727	LOV1 "LOCUS ORCHESTRATING VICT	0.361	0.248	0.281	9.6e-09
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.361	0.199	0.286	1.3e-08
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.411	0.202	0.263	5.3e-08

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 73/200 (36%), Positives = 104/200 (52%)

Query:   307 RALPKQVPDEEISEEVTAVVSMENDI-LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVK 364
             R L +  P ++  EE+  VV +E+D+ + L KL   N  DK+++IS+ G  G GKTAL +
Sbjct:   148 RQLRRAPPVDQ--EEL--VVGLEDDVKILLVKLLSDNEKDKSYIISIFGMGGLGKTALAR 203

Query:   365 TIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL------TQXXXXXXXXXXXXX 418
              +Y S   K+ F CRAW   YVSQ++  R +   I+R L                     
Sbjct:   204 KLYNSGDVKRRFDCRAWT--YVSQEYKTRDILIRIIRSLGIVSAEEMEKIKMFEEDEELE 261

Query:   419 XXFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSI 478
                 G+L  K Y+VV+DDV  P AW  LKR   P     GS+VI+ TR   +A     ++
Sbjct:   262 VYLYGLLEGKNYMVVVDDVWDPDAWESLKRAL-P-CDHRGSKVIITTRIRAIAEGVEGTV 319

Query:   479 FLHQLRPLNEEESGKLFQRR 498
             + H+LR L  EES  LF+R+
Sbjct:   320 YAHKLRFLTFEESWTLFERK 339

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
 Identities = 70/203 (34%), Positives = 100/203 (49%)

Query:   302 GGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKN-FLISVAGAAGSGKT 360
             GGN      +Q+      ++   VV +E+D   L +  L+  +KN F+IS+ G  G GKT
Sbjct:   140 GGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFIISIFGMGGLGKT 199

Query:   361 ALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL-----TQXXXXXXXXXX 415
             AL + +Y S   K+ F  RAW   YVSQ++    +   I+R L      +          
Sbjct:   200 ALARKLYNSRDVKERFEYRAWT--YVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEE 257

Query:   416 XXXXXFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS 475
                    G+L  K+YLVV+DD+    AW  LKR   P  +  GSRVI+ TR   VA    
Sbjct:   258 ELEVYLYGLLEGKKYLVVVDDIWEREAWDSLKRAL-P-CNHEGSRVIITTRIKAVAEGVD 315

Query:   476 PSIFLHQLRPLNEEESGKLFQRR 498
                + H+LR L  EES +LF++R
Sbjct:   316 GRFYAHKLRFLTFEESWELFEQR 338

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2102857 AT3G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 62/192 (32%), Positives = 93/192 (48%)

Query:   311 KQVPDEEISEEVTAVVSMENDI-LKLAKLTLNSSD-KNFLISVAGAAGSGKTALVKTIYE 368
             ++V      ++   VV + +D  + L KL  +  D K ++IS+ G  G GKT+L + ++ 
Sbjct:   147 REVRRARSDDQEERVVGLTDDAKVLLTKLLDDDGDNKIYMISIFGMEGLGKTSLARKLFN 206

Query:   369 SSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL--TQXXXXXXXXXXXXXXXFTGILY 426
             SS  K++F  R W NV  S + + R +   I+  L  T                   IL 
Sbjct:   207 SSDVKESFEYRVWTNV--SGECNTRDILMRIISSLEETSEGELEKMAQQELEVYLHDILQ 264

Query:   427 EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPL 486
             EKRYLVV+DD+    A   LKR   P  S  GSRVI+ T    VA      ++ H +R L
Sbjct:   265 EKRYLVVVDDIWESEALESLKRAL-P-CSYQGSRVIITTSIRVVAEGRDKRVYTHNIRFL 322

Query:   487 NEEESGKLFQRR 498
               +ES  LF+++
Sbjct:   323 TFKESWNLFEKK 334

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 56/176 (31%), Positives = 82/176 (46%)

Query:   325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANV 384
             +V +E  + KL    ++  +K  + S+ G  G GKT L K I+     +++F   AW  V
Sbjct:   164 LVGLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGKTTLAKQIFHHHKVRRHFDRFAW--V 221

Query:   385 YVSQDFDMRSVFADILRQLT---QXXXXXXXXXXXXXXXFTGILYEKRYLVVLDDVHSPG 441
             YVSQD   R V+ DI   L+   +                   L   + L+VLDD+    
Sbjct:   222 YVSQDCRRRHVWQDIFLNLSYKDENQRILSLRDEQLGEELHRFLKRNKCLIVLDDIWGKD 281

Query:   442 AWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
             AW  LK +F P  +  GS +IL TR   VA    P   LH+ + L  EES +L ++
Sbjct:   282 AWDCLKHVF-PHET--GSEIILTTRNKEVALYADPRGVLHEPQLLTCEESWELLEK 334

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 58/206 (28%), Positives = 94/206 (45%)

Query:   300 DDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGK 359
             DDG   D      + +  +     ++V ++    KL    L+   +  +++V G  GSGK
Sbjct:   150 DDG---DAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGK 206

Query:   360 TALVKTIYESSYTKKNFPCRAWANV---YVSQDFDMRSVFADILRQL-TQX-XXXXXXXX 414
             T L   I++S   +++F   AW  +   YV +D   R++  +  ++  TQ          
Sbjct:   207 TTLSANIFKSQSVRRHFESYAWVTISKSYVIEDV-FRTMIKEFYKEADTQIPAELYSLGY 265

Query:   415 XXXXXXFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474
                       L  KRY+VVLDDV + G W ++  I  P     GSRV++ TR+  VA SF
Sbjct:   266 RELVEKLVEYLQSKRYIVVLDDVWTTGLWREIS-IALPDGI-YGSRVMMTTRDMNVA-SF 322

Query:   475 SPSI--FLHQLRPLNEEESGKLFQRR 498
                I    H++  L E+E+  LF  +
Sbjct:   323 PYGIGSTKHEIELLKEDEAWVLFSNK 348

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 60/203 (29%), Positives = 93/203 (45%)

Query:   301 DGGNDDRALPKQVPDEEISEEV-----TAVVSMENDILKLAKLTLNSSDKNFLISVAGAA 355
             DGG   R+L  Q    EI +       + +V +E  + +L    +   D   ++S++G  
Sbjct:   137 DGG---RSLSLQDIQREIRQTFPNSSESDLVGVEQSVEELVG-PMVEIDNIQVVSISGMG 192

Query:   356 GSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT-QXXXXXXXXX 414
             G GKT L + I+     +++F   AW  V VSQ F  + V+  IL++L            
Sbjct:   193 GIGKTTLARQIFHHDLVRRHFDGFAW--VCVSQQFTQKHVWQRILQELRPHDGEILQMDE 250

Query:   415 XXXXXXFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474
                      +L   RYLVVLDDV     W  +K +F P+    G +++L +R   V    
Sbjct:   251 YTIQGKLFQLLETGRYLVVLDDVWKEEDWDRIKEVF-PRKR--GWKMLLTSRNEGVGLHA 307

Query:   475 SPSIFLHQLRPLNEEESGKLFQR 497
              P+    + R LN +ES KLF+R
Sbjct:   308 DPTCLSFRARILNPKESWKLFER 330

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 56/192 (29%), Positives = 89/192 (46%)

Query:   307 RALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTI 366
             R + +  PD   S+    +V +E  + +L    L  +D + ++S+AG  G GKT L + +
Sbjct:   151 REIRQTYPDSSESD----LVGVEQSVKELVG-HLVENDVHQVVSIAGMGGIGKTTLARQV 205

Query:   367 YESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT-QXXXXXXXXXXXXXXXFTGIL 425
             +     +++F   AW  V VSQ F  + V+  IL++L                     +L
Sbjct:   206 FHHDLVRRHFDGFAW--VCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLL 263

Query:   426 YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRP 485
                RYLVVLDDV     W  +K +F P+    G +++L +R   V     P+    +   
Sbjct:   264 EAGRYLVVLDDVWKKEDWDVIKAVF-PRKR--GWKMLLTSRNEGVGIHADPTCLTFRASI 320

Query:   486 LNEEESGKLFQR 497
             LN EES KL +R
Sbjct:   321 LNPEESWKLCER 332

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2197409 LOV1 "LOCUS ORCHESTRATING VICTORIN EFFECTS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 53/188 (28%), Positives = 87/188 (46%)

Query:   311 KQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESS 370
             K++     +   + +V +E  +  LA   L  +D   ++S++G  G GKT L + ++   
Sbjct:    26 KEIRQTFANSSESDLVGVEQSVEALAG-HLVENDNIQVVSISGMGGIGKTTLARQVFHHD 84

Query:   371 YTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT-QXXXXXXXXXXXXXXXFTGILYEKR 429
               +++F   AW  V+VSQ F  + V+  I ++L  Q                  +L   R
Sbjct:    85 MVQRHFDGFAW--VFVSQQFTQKHVWQRIWQELQPQNGDISHMDEHILQGKLFKLLETGR 142

Query:   430 YLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEE 489
             YLVVLDDV     W  +K +F P+    G +++L +R   V     P  F  + R L  E
Sbjct:   143 YLVVLDDVWKEEDWDRIKAVF-PRKR--GWKMLLTSRNEGVGIHADPKSFGFKTRILTPE 199

Query:   490 ESGKLFQR 497
             ES KL ++
Sbjct:   200 ESWKLCEK 207

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 55/192 (28%), Positives = 89/192 (46%)

Query:   307 RALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTI 366
             R + +  PD   S+    +V +E  + +L    L  +D   ++S+AG  G GKT L + +
Sbjct:   151 REIRQTYPDSSESD----LVGVEQSVEELVG-HLVENDIYQVVSIAGMGGIGKTTLARQV 205

Query:   367 YESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQXXXXXXXXXXXXXX-XFTGIL 425
             +     +++F   AW  V VSQ F ++ V+  IL++L                     +L
Sbjct:   206 FHHDLVRRHFDGFAW--VCVSQQFTLKHVWQRILQELQPHDGNILQMDESALQPKLFQLL 263

Query:   426 YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRP 485
                RYL+VLDDV     W  +K +F P+    G +++L +R   V     P+    +   
Sbjct:   264 ETGRYLLVLDDVWKKEDWDRIKAVF-PRKR--GWKMLLTSRNEGVGIHADPTCLTFRASI 320

Query:   486 LNEEESGKLFQR 497
             LN EES KL +R
Sbjct:   321 LNPEESWKLCER 332

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 59/224 (26%), Positives = 97/224 (43%)

Query:   277 RNMSFFGGESSFKPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLA 336
             R+M  FG + +     I     +   G+  R + ++   ++ S+     V +E ++ KL 
Sbjct:   124 RDMQSFGVQQA-----IVDGGYKQPQGDKQREMRQKFSKDDDSD----FVGLEANVKKLV 174

Query:   337 KLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVF 396
                ++ ++   ++S+ G  G GKT L K ++     K  F   +W  V VSQDF   +V+
Sbjct:   175 GYLVDEANVQ-VVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSW--VCVSQDFTRMNVW 231

Query:   397 ADILRQLT---QXXXXXXXXXXXXXXXFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQ 453
               ILR L    +                  +L   + L+VLDD+     W  +K IF P 
Sbjct:   232 QKILRDLKPKEEEKKIMEMTQDTLQGELIRLLETSKSLIVLDDIWEKEDWELIKPIFPPT 291

Query:   454 ASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
                 G +V+L +R   VA   + S    +   L  E+S  LFQR
Sbjct:   292 K---GWKVLLTSRNESVAMRRNTSYINFKPECLTTEDSWTLFQR 332

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_5000845 annotation not avaliable (829 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	501
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-20
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-10
pfam13401	124	pfam13401, AAA_22, AAA domain	2e-05
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	2e-04
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	0.003

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 11/173 (6%)

Query: 329 ENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ 388
           E+ I  L +  L  SD   ++ + G  G GKT L K IY       +F   AW  V VS+
Sbjct: 2   EDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAW--VVVSK 59

Query: 389 DFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYE----KRYLVVLDDVHSPGAWY 444
            +    +  DIL++L     D+   ++  ESE    + E    KR+L+VLDDV     W 
Sbjct: 60  TYTEFRLQKDILQELGL---DDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWD 116

Query: 445 DLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQR 497
            +   F    +  GSRVI+ TR   VA     +   H++  L  EES +LF  
Sbjct: 117 KIGVPFPDGEN--GSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSN 167

Length = 285

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 140 KEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE 199
             +  L + L+    +L  + +V + G   TT   + Y  ++V  +F   AWV V +   
Sbjct: 3   DMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYT 62

Query: 200 RRELVTDILKQVG---GSKVEKQL-DPQKKLRKLFTENRYLVVIINARTPDIWDILKYLF 255
              L  DIL+++G      VEK   +   K+++     R+L+V+ +    + WD +   F
Sbjct: 63  EFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPF 122

Query: 256 PNSSNGSRVIL 266
           P+  NGSRVI+
Sbjct: 123 PDGENGSRVIV 133

Length = 285

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE 407
           +  + G +GSGKT L++        ++    R    V        + +   ILR L    
Sbjct: 6   IGVLTGESGSGKTTLLRR-----LARQLPNRRV-VYVEAPSLGTPKDLLRKILRAL--GL 57

Query: 408 VDEESSLDDLESEFTGILYE-KRYLVVLDDVH--SPGAWYDLKRIFSPQASPIGSRVILI 464
                +  +L       L    R L+++D+    S  A  +L+ ++      I   VIL+
Sbjct: 58  PLSGGTTAELLEAILDALKRRGRPLLIIDEAQHLSLEALEELRDLYDLSEKGIQ--VILV 115

Length = 124

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 17/111 (15%)

Query: 348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE 407
            + + G +G+GKT+L++ + E          +A  N   +    +R +   +LR+L  + 
Sbjct: 26  SVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQLLRELAAEL 85

Query: 408 V------------DEESSLDDLESEFTGILYEKRYLV-VLDDVHSPGAWYD 445
           +            +    L DL      +L   R LV VLDD+     W D
Sbjct: 86  LLLREALLAALGAELIEGLQDLVELLERLLARARPLVLVLDDLQ----WAD 132

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 27/147 (18%)

Query: 326 VSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTI-YESSYTKKNFPCRAWANV 384
           V  E  I  L +       KN L+   G  G+GKT L + I  E       F       +
Sbjct: 1   VGQEEAIEALREALELPPPKNLLL--YGPPGTGKTTLARAIANELFRPGAPF-------L 51

Query: 385 YVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAW- 443
           Y++         +D+   L    V E      +   F      K  ++ +D++ S     
Sbjct: 52  YLN--------ASDL---LEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGA 100

Query: 444 -YDLKRIF----SPQASPIGSRVILIT 465
              L R+       +      RVI  T
Sbjct: 101 QNALLRVLETLNDLRIDRENVRVIGAT 127

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	501
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.9
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.79
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.29
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.22
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.16
PF05729	166	NACHT: NACHT domain	99.15
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.03
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.0
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.0
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.94
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.9
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.85
CHL00095	821	clpC Clp protease ATP binding subunit	98.83
PRK06893	229	DNA replication initiation factor; Validated	98.81
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.81
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.8
PRK13342	413	recombination factor protein RarA; Reviewed	98.79
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.76
PF13173	128	AAA_14: AAA domain	98.74
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.69
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.69
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.67
PRK12402	337	replication factor C small subunit 2; Reviewed	98.67
PTZ00202	550	tuzin; Provisional	98.66
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.65
KOG2028	554	consensus ATPase related to the helicase subunit o	98.65
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.63
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.62
PRK04841	903	transcriptional regulator MalT; Provisional	98.61
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.6
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.6
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.6
cd01128	249	rho_factor Transcription termination factor rho is	98.58
PF05729	166	NACHT: NACHT domain	98.58
PRK13341	725	recombination factor protein RarA/unknown domain f	98.57
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.57
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.57
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.57
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.56
PRK08727	233	hypothetical protein; Validated	98.56
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.55
PLN03025	319	replication factor C subunit; Provisional	98.55
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.54
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.54
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.52
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.52
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.51
PRK09376	416	rho transcription termination factor Rho; Provisio	98.49
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.49
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.49
PRK09302	509	circadian clock protein KaiC; Reviewed	98.48
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.48
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.47
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.46
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.46
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.46
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.45
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.45
PRK04195	482	replication factor C large subunit; Provisional	98.44
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.43
PRK08084	235	DNA replication initiation factor; Provisional	98.41
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.41
PHA02544	316	44 clamp loader, small subunit; Provisional	98.39
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.39
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.38
PTZ00202	550	tuzin; Provisional	98.38
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.38
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.38
PF13173	128	AAA_14: AAA domain	98.38
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.38
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.37
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.37
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.37
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.36
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.36
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.35
COG0488	530	Uup ATPase components of ABC transporters with dup	98.35
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.32
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.32
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.32
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.32
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.31
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.31
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.31
PRK09087	226	hypothetical protein; Validated	98.3
PRK05642	234	DNA replication initiation factor; Validated	98.3
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.3
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.29
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.29
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.25
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.25
TIGR00767	415	rho transcription termination factor Rho. Members	98.22
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.21
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.21
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.21
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.21
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.2
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.19
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.19
cd01128	249	rho_factor Transcription termination factor rho is	98.19
CHL00095	821	clpC Clp protease ATP binding subunit	98.18
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.17
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.17
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.16
CHL00181	287	cbbX CbbX; Provisional	98.15
PRK12422	445	chromosomal replication initiation protein; Provis	98.15
COG1123	539	ATPase components of various ABC-type transport sy	98.14
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.14
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.14
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.14
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.14
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.13
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.12
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.12
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.11
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.11
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.11
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.11
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.1
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.1
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.07
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.07
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.05
PRK10865	857	protein disaggregation chaperone; Provisional	98.05
PRK06620	214	hypothetical protein; Validated	98.03
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.03
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.02
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.02
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.01
PRK13409	590	putative ATPase RIL; Provisional	97.99
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.98
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.97
CHL00176	638	ftsH cell division protein; Validated	97.97
PRK04841	903	transcriptional regulator MalT; Provisional	97.97
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.96
PRK13342	413	recombination factor protein RarA; Reviewed	97.96
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	97.95
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.95
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.94
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.93
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.93
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.92
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.91
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.9
smart00382	148	AAA ATPases associated with a variety of cellular	97.88
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.86
PF00004	132	AAA: ATPase family associated with various cellula	97.86
PRK09376	416	rho transcription termination factor Rho; Provisio	97.85
PRK08116	268	hypothetical protein; Validated	97.84
PRK05707	328	DNA polymerase III subunit delta'; Validated	97.84
PRK11147	635	ABC transporter ATPase component; Reviewed	97.82
PRK12377	248	putative replication protein; Provisional	97.8
CHL00195	489	ycf46 Ycf46; Provisional	97.78
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.77
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.77
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.77
KOG0927	614	consensus Predicted transporter (ABC superfamily)	97.76
PRK08181	269	transposase; Validated	97.75
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.75
TIGR00767	415	rho transcription termination factor Rho. Members	97.75
KOG2028	554	consensus ATPase related to the helicase subunit o	97.71
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.71
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.7
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.7
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	97.69
PRK06526	254	transposase; Provisional	97.69
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.68
PRK03003	472	GTP-binding protein Der; Reviewed	97.68
PRK04195	482	replication factor C large subunit; Provisional	97.68
COG3903	414	Predicted ATPase [General function prediction only	97.67
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	97.67
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.67
PRK06893	229	DNA replication initiation factor; Validated	97.65
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.64
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.63
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.62
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.61
PRK07952	244	DNA replication protein DnaC; Validated	97.6
PRK10536	262	hypothetical protein; Provisional	97.59
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.59
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.59
PRK12402	337	replication factor C small subunit 2; Reviewed	97.57
KOG1514	767	consensus Origin recognition complex, subunit 1, a	97.57
PRK13531	498	regulatory ATPase RavA; Provisional	97.56
PRK13341	725	recombination factor protein RarA/unknown domain f	97.56
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.55
PRK10865	857	protein disaggregation chaperone; Provisional	97.53
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.53
PRK10938	490	putative molybdenum transport ATP-binding protein	97.53
PRK08118	167	topology modulation protein; Reviewed	97.52
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.52
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.52
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.5
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.5
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.49
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.49
PRK09183	259	transposase/IS protein; Provisional	97.48
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.48
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.47
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.47
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.46
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.46
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.46
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.46
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.45
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.45
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.45
COG3899	849	Predicted ATPase [General function prediction only	97.45
PRK09354	349	recA recombinase A; Provisional	97.45
PRK06835	329	DNA replication protein DnaC; Validated	97.45
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.44
PTZ00112	1164	origin recognition complex 1 protein; Provisional	97.44
PLN03025	319	replication factor C subunit; Provisional	97.43
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.43
smart00382	148	AAA ATPases associated with a variety of cellular	97.43
PHA02544	316	44 clamp loader, small subunit; Provisional	97.42
PRK11608	326	pspF phage shock protein operon transcriptional ac	97.42
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.41
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.41
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.4
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.39
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	97.38
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	97.38
PRK08116	268	hypothetical protein; Validated	97.37
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.37
PRK06871	325	DNA polymerase III subunit delta'; Validated	97.37
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.36
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.34
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	97.34
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.32
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.31
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.3
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	97.3
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	97.3
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.29
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.29
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.29
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	97.28
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.28
PRK06921	266	hypothetical protein; Provisional	97.28
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.28
PRK04296	190	thymidine kinase; Provisional	97.27
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.27
PRK08939	306	primosomal protein DnaI; Reviewed	97.27
PRK10536	262	hypothetical protein; Provisional	97.27
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.27
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.26
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.26
PHA00729	226	NTP-binding motif containing protein	97.26
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	97.25
PRK06964	342	DNA polymerase III subunit delta'; Validated	97.25
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	97.25
PRK08769	319	DNA polymerase III subunit delta'; Validated	97.25
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.25
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.24
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	97.24
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	97.24
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.24
CHL00181	287	cbbX CbbX; Provisional	97.24
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.23
PRK07993	334	DNA polymerase III subunit delta'; Validated	97.22
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.22
PF00004	132	AAA: ATPase family associated with various cellula	97.21
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	97.21
PF14516	331	AAA_35: AAA-like domain	97.2
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.19
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	97.19
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.19
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	97.17
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	97.16
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.15
PRK08118	167	topology modulation protein; Reviewed	97.14
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.13
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	97.13
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.13
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	97.12
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.11
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.11
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.1
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.1
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.1
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	97.1
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.1
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.1
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.09
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.09
PRK07261	171	topology modulation protein; Provisional	97.07
PRK06090	319	DNA polymerase III subunit delta'; Validated	97.07
KOG0736	953	consensus Peroxisome assembly factor 2 containing	97.07
PRK05022	509	anaerobic nitric oxide reductase transcription reg	97.06
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.05
PRK08727	233	hypothetical protein; Validated	97.04
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.02
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.02
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	97.01
PRK06067	234	flagellar accessory protein FlaH; Validated	97.0
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.0
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	96.99
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.99
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.98
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.98
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	96.98
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	96.97
COG2204	464	AtoC Response regulator containing CheY-like recei	96.96
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.96
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.96
PRK08084	235	DNA replication initiation factor; Provisional	96.95
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.94
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.93
PRK09087	226	hypothetical protein; Validated	96.92
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.91
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	96.9
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.89
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	96.89
PRK00093	435	GTP-binding protein Der; Reviewed	96.88
PRK07261	171	topology modulation protein; Provisional	96.88
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.87
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	96.87
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.87
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	96.86
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.85
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.84
PRK15455	644	PrkA family serine protein kinase; Provisional	96.84
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.84
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.82
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	96.82
PRK12377	248	putative replication protein; Provisional	96.81
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.81
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.8
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.8
COG4172	534	ABC-type uncharacterized transport system, duplica	96.8
PRK04328	249	hypothetical protein; Provisional	96.8
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.79
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.78
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	96.78
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.77
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.77
PRK06526	254	transposase; Provisional	96.76
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.76
PRK08181	269	transposase; Validated	96.76
PRK05642	234	DNA replication initiation factor; Validated	96.75
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.75
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.75
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.74
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.74
PRK06696	223	uridine kinase; Validated	96.73
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.73
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.73
PRK13695	174	putative NTPase; Provisional	96.73
PRK12608	380	transcription termination factor Rho; Provisional	96.72
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.71
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.71
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.71
PRK08939	306	primosomal protein DnaI; Reviewed	96.71
PHA02244	383	ATPase-like protein	96.7
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	96.7
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	96.7
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	96.69
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	96.68
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.68
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.68
PRK05541	176	adenylylsulfate kinase; Provisional	96.64
PRK12608	380	transcription termination factor Rho; Provisional	96.64
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.64
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.64
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.63
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	96.61
cd03246	173	ABCC_Protease_Secretion This family represents the	96.6
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	96.6
PRK07471	365	DNA polymerase III subunit delta'; Validated	96.59
PRK11823	446	DNA repair protein RadA; Provisional	96.56
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	96.56
PRK09183	259	transposase/IS protein; Provisional	96.55
PRK07667	193	uridine kinase; Provisional	96.54
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.54
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.54
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	96.53
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.52
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.52
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.51
PRK06620	214	hypothetical protein; Validated	96.49
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.49
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	96.48
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.48
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.47
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.47
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.47
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	96.47
PRK14087	450	dnaA chromosomal replication initiation protein; P	96.46
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.46
PRK09112	351	DNA polymerase III subunit delta'; Validated	96.46
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.45
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.45
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.45
COG1875	436	NYN ribonuclease and ATPase of PhoH family domains	96.44
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	96.43
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.43
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	96.43
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.43
PRK15424	538	propionate catabolism operon regulatory protein Pr	96.42
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	96.41
PTZ00035	337	Rad51 protein; Provisional	96.41
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.4
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.39
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	96.38
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.38
PRK09519	790	recA DNA recombination protein RecA; Reviewed	96.38
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.37
PRK06696	223	uridine kinase; Validated	96.37
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	96.36
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	96.36
PRK06921	266	hypothetical protein; Provisional	96.36
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.35
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	96.35
PRK06762	166	hypothetical protein; Provisional	96.35
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.34
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.34
PRK07132	299	DNA polymerase III subunit delta'; Validated	96.33
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.33
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.33
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.33
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	96.32
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	96.31
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.31
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.3
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.29
PRK05973	237	replicative DNA helicase; Provisional	96.29
PRK07667	193	uridine kinase; Provisional	96.28
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.28
PRK00149	450	dnaA chromosomal replication initiation protein; R	96.28
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.28
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.27
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.27
PRK08233	182	hypothetical protein; Provisional	96.27
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.27
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.27
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.25
PTZ00494	664	tuzin-like protein; Provisional	96.23
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.23
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	96.22
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.21
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.21
PRK10867	433	signal recognition particle protein; Provisional	96.2
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	96.2
PF00154	322	RecA: recA bacterial DNA recombination protein; In	96.19
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.19
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	96.19
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	96.18
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.18
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.18
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.18
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	96.18
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.17
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.16
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.16
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.16
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.15
PRK05917	290	DNA polymerase III subunit delta'; Validated	96.15
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.14
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.14
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.13
PRK07952	244	DNA replication protein DnaC; Validated	96.13
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.11
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.11
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.11
CHL00176	638	ftsH cell division protein; Validated	96.09
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.09
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.08
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	96.08
PRK15455	644	PrkA family serine protein kinase; Provisional	96.08
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.08
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.07
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.06
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.06
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.05
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.05
COG1160	444	Predicted GTPases [General function prediction onl	96.05
PRK14974	336	cell division protein FtsY; Provisional	96.04
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.04
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	96.03
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.03
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.03
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.03
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.03
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.03
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.02
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	96.01
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.0
PRK06835	329	DNA replication protein DnaC; Validated	96.0
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.0
KOG0062	582	consensus ATPase component of ABC transporters wit	96.0
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	95.99
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.99
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	95.99
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.98
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.98

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-34  Score=307.84  Aligned_cols=290  Identities=19%  Similarity=0.274  Sum_probs=219.2

Q ss_pred             cccchH-HHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--------cChhhHHHHHHHHHHhHHHHHHH
Q 010799            3 AEATIV-PVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEI--------NDVSPKLLNAVSQVQDITDTFRI   73 (501)
Q Consensus         3 a~~~v~-~v~kl~~~l~~e~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~--------~~~~~~l~~~~~~~edllD~~~~   73 (501)
                      +++.++ .+.|+.+++.++...+.+..+.+..++..|..++.++++++.        .+|.+.+++..|++++.++.+.+
T Consensus         1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v   80 (889)
T KOG4658|consen    1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV   80 (889)
T ss_pred             CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677 888999999999999999999999999999999999998886        23778899999999999999998


Q ss_pred             Hhhhhhhccccc--------cCcchHHHH-------HHHHHHHHHHHHHHHHHHhhhhcccc-ccc---ccccccccccc
Q 010799           74 ENCKRVYLGVIS--------LRSSTVQAR-------FRKKIKELVSGIREESEKMLLEISGK-ITS---AENVDSAKKTG  134 (501)
Q Consensus        74 ~~~~~~~~~~~~--------~~~~~~~~~-------~~~~i~~l~~~i~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~  134 (501)
                      +....+......        .+.....+.       +.+++-.....++....+..+...+. ..+   ....+......
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  160 (889)
T KOG4658|consen   81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD  160 (889)
T ss_pred             HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence            765543322111        111123333       44444444444444333222222121 111   11111122333


Q ss_pred             cccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccc-cccccceeEEEEcCCCCCHHHHHHHHHHHhcC
Q 010799          135 ILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECET-VKEYFQCRAWVPVPEELERRELVTDILKQVGG  213 (501)
Q Consensus       135 ~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~-v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~  213 (501)
                       ||.+..++++.+.|.+++.  .+++|+||||+||||||+++||+.. ++.+||..+||+||+.|+...++.+|++.++.
T Consensus       161 -VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~  237 (889)
T KOG4658|consen  161 -VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL  237 (889)
T ss_pred             -ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence             9999999999999998764  8999999999999999999999998 99999999999999999999999999999987


Q ss_pred             CCCcC----cchHHHHHHHHccCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc-ccCCCCCCCccc
Q 010799          214 SKVEK----QLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC-RNMSFFGGESSF  288 (501)
Q Consensus       214 ~~~~~----~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~-~~~~~l~~~~~~  288 (501)
                      .....    ...++..|.+.|++|||||||||||+..+|+.++.++|...+||||++|||+++||.. ++.     .+.+
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~-----~~~~  312 (889)
T KOG4658|consen  238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV-----DYPI  312 (889)
T ss_pred             CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC-----Cccc
Confidence            43331    2356899999999999999999999999999999999999999999999999999974 222     2455


Q ss_pred             CcceeeeccccC
Q 010799          289 KPKYIAYAASED  300 (501)
Q Consensus       289 ~~~~~~~~~s~~  300 (501)
                      +++++....+|.
T Consensus       313 ~v~~L~~~eaW~  324 (889)
T KOG4658|consen  313 EVECLTPEEAWD  324 (889)
T ss_pred             cccccCccccHH
Confidence            555555554444

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.92  E-value=4.2e-25  Score=215.77  Aligned_cols=169  Identities=29%  Similarity=0.486  Sum_probs=139.5

Q ss_pred             cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC
Q 010799          328 MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE  407 (501)
Q Consensus       328 R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~  407 (501)
                      ||.++++|.+.|....+..++|+|+|+||+|||+||..++++..+..+|+.++|  ++++...+...++..++.++....
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~w--v~~~~~~~~~~~~~~i~~~l~~~~   78 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIW--VSLSKNPSLEQLLEQILRQLGEPD   78 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEE--EEEES-SCCHHHHHHHHHHHTCC-
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccc--cccccccccccccccccccccccc
Confidence            789999999999876678899999999999999999999996558999999999  999999999999999999999885


Q ss_pred             CC--CCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCCCCcceeCCC
Q 010799          408 VD--EESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRP  485 (501)
Q Consensus       408 ~~--~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~~~~~~~l~~  485 (501)
                      ..  ...+..+....+.+.+.++++||||||+|+...|+.+...++.  ...+++||||||+..++..+......++|++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~--~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~  156 (287)
T PF00931_consen   79 SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPS--FSSGSKILVTTRDRSVAGSLGGTDKVIELEP  156 (287)
T ss_dssp             STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HC--HHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred             cccccccccccccccchhhhccccceeeeeeeccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            42  3567888999999999999999999999999999888888887  6789999999999988877652367999999


Q ss_pred             CChHHHHHHHHHhhc
Q 010799          486 LNEEESGKLFQRRLK  500 (501)
Q Consensus       486 L~~~ea~~Lf~~~~~  500 (501)
                      |+.++|++||.+.++
T Consensus       157 L~~~ea~~L~~~~~~  171 (287)
T PF00931_consen  157 LSEEEALELFKKRAG  171 (287)
T ss_dssp             --HHHHHHHHHHHHT
T ss_pred             ccccccccccccccc
Confidence            999999999999876

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.90  E-value=9.7e-24  Score=229.69  Aligned_cols=169  Identities=28%  Similarity=0.447  Sum_probs=154.2

Q ss_pred             eecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccc-cccCCccceeEEEEeCCCCChHHHHHHHHHHhc
Q 010799          326 VSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSY-TKKNFPCRAWANVYVSQDFDMRSVFADILRQLT  404 (501)
Q Consensus       326 vGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~-~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~  404 (501)
                      ||.++.++++...|...+.  .+++|+||||+||||||+.++++.. +..+|+.++|  |.++..++...+..+|+..++
T Consensus       161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iW--V~VSk~f~~~~iq~~Il~~l~  236 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIW--VVVSKEFTTRKIQQTILERLG  236 (889)
T ss_pred             ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEE--EEEcccccHHhHHHHHHHHhc
Confidence            9999999999999976544  8999999999999999999999887 8999999999  999999999999999999888


Q ss_pred             cCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh-cCCCCccee
Q 010799          405 QDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS-FSPSIFLHQ  482 (501)
Q Consensus       405 ~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~-~~~~~~~~~  482 (501)
                      ..... ......+....+.++|..+|+|||+||+|+..+|+.+...+|.  ...||+|++|||++.++.. ++ ....++
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~--~~~g~KvvlTTRs~~V~~~~m~-~~~~~~  313 (889)
T KOG4658|consen  237 LLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPS--RENGSKVVLTTRSEEVCGRAMG-VDYPIE  313 (889)
T ss_pred             cCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCC--ccCCeEEEEEeccHhhhhcccc-CCcccc
Confidence            84442 2334478899999999999999999999999999999999999  7888999999999999999 65 688999


Q ss_pred             CCCCChHHHHHHHHHhhcC
Q 010799          483 LRPLNEEESGKLFQRRLKA  501 (501)
Q Consensus       483 l~~L~~~ea~~Lf~~~~~~  501 (501)
                      ++.|+.+|||+||++.||.
T Consensus       314 v~~L~~~eaW~LF~~~v~~  332 (889)
T KOG4658|consen  314 VECLTPEEAWDLFQKKVGP  332 (889)
T ss_pred             ccccCccccHHHHHHhhcc
Confidence            9999999999999999873

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.90  E-value=4.4e-24  Score=208.59  Aligned_cols=139  Identities=23%  Similarity=0.384  Sum_probs=115.5

Q ss_pred             chhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc
Q 010799          138 LNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE  217 (501)
Q Consensus       138 ~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~  217 (501)
                      |+.++++|.++|.....+.++|+|+||||+||||||..++++..++.+|+.++||.++...+...+++.|+.+++.....
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~   80 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS   80 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            68899999999998667899999999999999999999998877999999999999999999999999999999877332


Q ss_pred             -----CcchHHHHHHHHccCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799          218 -----KQLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC  276 (501)
Q Consensus       218 -----~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~  276 (501)
                           +..+....+++.|+++++||||||||+...|+.+...++....||+||||||+..|+..
T Consensus        81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~  144 (287)
T PF00931_consen   81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGS  144 (287)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTT
T ss_pred             cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccc
Confidence                 23446899999999999999999999999999999888888889999999999999864

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.83  E-value=1e-19  Score=207.91  Aligned_cols=171  Identities=17%  Similarity=0.256  Sum_probs=135.0

Q ss_pred             ccccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe---CCC-------
Q 010799          320 EEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV---SQD-------  389 (501)
Q Consensus       320 ~~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~---~~~-------  389 (501)
                      ...+++|||++.++++..+|....+..++++||||||+||||||+.+|+  ++..+|++.+|  +..   ...       
T Consensus       181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vf--v~~~~v~~~~~~~~~~  256 (1153)
T PLN03210        181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVF--IDRAFISKSMEIYSSA  256 (1153)
T ss_pred             cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEE--eeccccccchhhcccc
Confidence            3457799999999999999976667889999999999999999999999  88889988887  531   111       


Q ss_pred             ----CC-hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEE
Q 010799          390 ----FD-MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       390 ----~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiT  464 (501)
                          .+ ...+..+++..+..........    ...+++.+.++|+||||||+|+..+|+.+.....+  .++|++||||
T Consensus       257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~--~~~GsrIIiT  330 (1153)
T PLN03210        257 NPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQW--FGSGSRIIVI  330 (1153)
T ss_pred             cccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCcc--CCCCcEEEEE
Confidence                01 1233444555443332211111    25677889999999999999999999999887777  7899999999


Q ss_pred             eCChHHHhhcCCCCcceeCCCCChHHHHHHHHHhhcC
Q 010799          465 TREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRLKA  501 (501)
Q Consensus       465 tR~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~  501 (501)
                      ||++.++..++ ...+|+|+.|+.++|++||+++||.
T Consensus       331 Trd~~vl~~~~-~~~~~~v~~l~~~ea~~LF~~~Af~  366 (1153)
T PLN03210        331 TKDKHFLRAHG-IDHIYEVCLPSNELALEMFCRSAFK  366 (1153)
T ss_pred             eCcHHHHHhcC-CCeEEEecCCCHHHHHHHHHHHhcC
Confidence            99999988765 6689999999999999999999873

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.79  E-value=1.3e-18  Score=198.73  Aligned_cols=158  Identities=14%  Similarity=0.174  Sum_probs=119.5

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc---CCC-----------
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV---PEE-----------  197 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v---s~~-----------  197 (501)
                      ..++||++..+++|..+|..+..+.++|+||||||+||||||+.+|+  ++..+|+..+|+.-   +..           
T Consensus       183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~  260 (1153)
T PLN03210        183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDD  260 (1153)
T ss_pred             cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccc
Confidence            46799999999999999976666799999999999999999999996  67788999887732   111           


Q ss_pred             CC-HHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799          198 LE-RRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC  276 (501)
Q Consensus       198 ~~-~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~  276 (501)
                      ++ ...++.+++.++.......... ...+++.|++||+||||||||+...|+.+.......++||+||||||+.+++..
T Consensus       261 ~~~~~~l~~~~l~~il~~~~~~~~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~  339 (1153)
T PLN03210        261 YNMKLHLQRAFLSEILDKKDIKIYH-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA  339 (1153)
T ss_pred             cchhHHHHHHHHHHHhCCCCcccCC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence            11 1235555555553322211111 367888999999999999999999999998877767889999999999999863


Q ss_pred             ------ccCCCCCCCcccCcce
Q 010799          277 ------RNMSFFGGESSFKPKY  292 (501)
Q Consensus       277 ------~~~~~l~~~~~~~~~~  292 (501)
                            +.++.++.+++|....
T Consensus       340 ~~~~~~~~v~~l~~~ea~~LF~  361 (1153)
T PLN03210        340 HGIDHIYEVCLPSNELALEMFC  361 (1153)
T ss_pred             cCCCeEEEecCCCHHHHHHHHH
Confidence                  3445566666666554

syringae 6; Provisional

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.29  E-value=9.1e-11  Score=119.92  Aligned_cols=174  Identities=21%  Similarity=0.238  Sum_probs=117.5

Q ss_pred             cceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      +.|+||++++++|...+...  +...+.+.|+|++|+|||++++.+++  ..........|-++++....+...++..++
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~~~~~~~i~  107 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTRYAIFSEIA  107 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence            45999999999999998442  34456789999999999999999998  433332222332277777778889999999


Q ss_pred             HHhccC-CCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCChh------hHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799          401 RQLTQD-EVDEESSLDDLESEFTGILYE--KRYLVVLDDVHSPG------AWYDLKRIFSPQASPIGSRVILITREAYVA  471 (501)
Q Consensus       401 ~~l~~~-~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~~~------~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~  471 (501)
                      .++... .+....+.++....+.+.+..  ++.+||||+++...      .+..+...+... .+.+..+|.++......
T Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~~~  186 (394)
T PRK00411        108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLTFL  186 (394)
T ss_pred             HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcchh
Confidence            998762 222334567778888887753  56899999998742      233443333331 11133366666654433


Q ss_pred             hhcCC------CCcceeCCCCChHHHHHHHHHhh
Q 010799          472 RSFSP------SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       472 ~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+      ....+.+++++.++..+++..++
T Consensus       187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~  220 (394)
T PRK00411        187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV  220 (394)
T ss_pred             hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence            32211      23568999999999999998775

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.22  E-value=2.7e-10  Score=115.20  Aligned_cols=172  Identities=19%  Similarity=0.227  Sum_probs=112.6

Q ss_pred             cceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHH
Q 010799          323 TAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRS  394 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~  394 (501)
                      +.|+||++++++|...|..  .+.....+.|+|++|+|||++++.++++  .....      -..+|  +++....+...
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~--in~~~~~~~~~   90 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVY--VNCQILDTLYQ   90 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEE--EECCCCCCHHH
Confidence            4599999999999999853  2344568999999999999999999884  32211      12456  78777777888


Q ss_pred             HHHHHHHHhc---cCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCCh--hh---HHHHHHh--cCCCCCCCCCEEE
Q 010799          395 VFADILRQLT---QDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHSP--GA---WYDLKRI--FSPQASPIGSRVI  462 (501)
Q Consensus       395 ~~~~i~~~l~---~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~--~~---~~~l~~~--l~~~~~~~~~~iI  462 (501)
                      ++..++.++.   ...+....+..+....+.+.+.  +++++||||+++..  ..   +..+...  .... .+....+|
T Consensus        91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~-~~~~v~lI  169 (365)
T TIGR02928        91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL-DNAKVGVI  169 (365)
T ss_pred             HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC-CCCeEEEE
Confidence            9999999984   2222123345566666666664  45789999999875  11   2222222  1110 11334555


Q ss_pred             EEeCChHHHhhcCC------CCcceeCCCCChHHHHHHHHHhh
Q 010799          463 LITREAYVARSFSP------SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       463 iTtR~~~~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .++........+.+      ....+.++|++.++..+++..++
T Consensus       170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~  212 (365)
T TIGR02928       170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA  212 (365)
T ss_pred             EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence            55654433222211      13568999999999999998775

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.16  E-value=4.5e-10  Score=122.85  Aligned_cols=163  Identities=18%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             cceeecchhHHHHHHHhhcC------CCC-ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799          323 TAVVSMENDILKLAKLTLNS------SDK-NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~------~~~-~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~  395 (501)
                      .+++|.+..++.+...+...      ..+ ..++.++|++|+|||.||+.++.  ....   ..+.  ++++.-.+.   
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l~~---~~~~--~d~se~~~~---  523 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--ALGV---HLER--FDMSEYMEK---  523 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--HhcC---CeEE--EeCchhhhc---
Confidence            46889999999988887531      122 24689999999999999999988  3322   2233  343321110   


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEE
Q 010799          396 FADILRQLTQDEVDEESSLDDLESEFTGILYEK-RYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVIL  463 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIi  463 (501)
                       ..+...++.+......+.   ...+.+.+..+ ..+++||+++.  .+.++.|+..+....         ...++.+|+
T Consensus       524 -~~~~~lig~~~gyvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~  599 (731)
T TIGR02639       524 -HTVSRLIGAPPGYVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIM  599 (731)
T ss_pred             -ccHHHHhcCCCCCcccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence             011111111110001111   12223333333 45999999986  455666666554310         023455777


Q ss_pred             EeCChH----------------------HHhhcCC-----CCcceeCCCCChHHHHHHHHHhh
Q 010799          464 ITREAY----------------------VARSFSP-----SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       464 TtR~~~----------------------~~~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ||-...                      +...+.+     -..++.+.+|+.++-.+++...+
T Consensus       600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L  662 (731)
T TIGR02639       600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV  662 (731)
T ss_pred             CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence            763210                      1111111     24689999999999998887654

>PF05729 NACHT: NACHT domain

Probab=99.15  E-value=3.2e-10  Score=100.84  Aligned_cols=143  Identities=22%  Similarity=0.395  Sum_probs=86.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChH---HHHHHHHHHhccCCCCCCCCHHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMR---SVFADILRQLTQDEVDEESSLDDLES  419 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~  419 (501)
                      |++.|.|.+|+|||+++..++........    +...+|  ++........   .+...+..++.....    ....   
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~~~---   71 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFF--FSLRDISDSNNSRSLADLLFDQLPESIA----PIEE---   71 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEE--EeehhhhhccccchHHHHHHHhhccchh----hhHH---
Confidence            58999999999999999998874433332    234455  5553332221   333333333332211    1111   


Q ss_pred             HHHHhc-CCceEEEEEcCCCChhh---------HHHHHHhcCCCCCCCCCEEEEEeCChHH---HhhcCCCCcceeCCCC
Q 010799          420 EFTGIL-YEKRYLVVLDDVHSPGA---------WYDLKRIFSPQASPIGSRVILITREAYV---ARSFSPSIFLHQLRPL  486 (501)
Q Consensus       420 ~l~~~l-~~~r~LlVlDnv~~~~~---------~~~l~~~l~~~~~~~~~~iIiTtR~~~~---~~~~~~~~~~~~l~~L  486 (501)
                      .+...+ ...+++||||+++....         +..+...+......+++++|||+|....   ..... ....+++++|
T Consensus        72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~-~~~~~~l~~~  150 (166)
T PF05729_consen   72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK-QAQILELEPF  150 (166)
T ss_pred             HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC-CCcEEEECCC
Confidence            222222 45799999999987322         2223332222113668999999998776   22332 4468999999


Q ss_pred             ChHHHHHHHHHhh
Q 010799          487 NEEESGKLFQRRL  499 (501)
Q Consensus       487 ~~~ea~~Lf~~~~  499 (501)
                      +.++..+++.+..
T Consensus       151 ~~~~~~~~~~~~f  163 (166)
T PF05729_consen  151 SEEDIKQYLRKYF  163 (166)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.03  E-value=1.3e-09  Score=105.54  Aligned_cols=124  Identities=21%  Similarity=0.306  Sum_probs=83.8

Q ss_pred             CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHH-
Q 010799          343 SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEF-  421 (501)
Q Consensus       343 ~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l-  421 (501)
                      ++......+|||+|+||||||+.+..  .....|..     +++  ..+-..                  +..++++.- 
T Consensus        45 ~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~-----~sA--v~~gvk------------------dlr~i~e~a~   97 (436)
T COG2256          45 AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFEA-----LSA--VTSGVK------------------DLREIIEEAR   97 (436)
T ss_pred             cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceEE-----ecc--ccccHH------------------HHHHHHHHHH
Confidence            35667888999999999999999988  56665532     222  111111                  122222222 


Q ss_pred             HHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE--EeCChHH--HhhcCCCCcceeCCCCChHHHHHHH
Q 010799          422 TGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL--ITREAYV--ARSFSPSIFLHQLRPLNEEESGKLF  495 (501)
Q Consensus       422 ~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi--TtR~~~~--~~~~~~~~~~~~l~~L~~~ea~~Lf  495 (501)
                      +....+++.+|++|++..  ..+++.|++.+.+     |.-|+|  ||-|+..  -..+.+...++.+++|+.++-.+++
T Consensus        98 ~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~-----G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l  172 (436)
T COG2256          98 KNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN-----GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLL  172 (436)
T ss_pred             HHHhcCCceEEEEehhhhcChhhhhhhhhhhcC-----CeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHH
Confidence            223347899999999974  6777887776666     777777  6666642  2222236789999999999999999


Q ss_pred             HHh
Q 010799          496 QRR  498 (501)
Q Consensus       496 ~~~  498 (501)
                      .+.
T Consensus       173 ~ra  175 (436)
T COG2256         173 KRA  175 (436)
T ss_pred             HHH
Confidence            873

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.00  E-value=2e-08  Score=110.32  Aligned_cols=155  Identities=17%  Similarity=0.143  Sum_probs=88.6

Q ss_pred             ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..++.|.+...+.|.+.+..           +-..++-+.++|++|+|||++|+.+++  .....|       +.+... 
T Consensus       452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f-------i~v~~~-  521 (733)
T TIGR01243       452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF-------IAVRGP-  521 (733)
T ss_pred             hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-------EEEehH-
Confidence            35678888887777766531           112346789999999999999999998  433332       333211 


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--------------hhHHHHHHhcCCCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--------------GAWYDLKRIFSPQASP  456 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--------------~~~~~l~~~l~~~~~~  456 (501)
                             +++....      ..+...+...+...-...+.+|+||+++..              .....++..+......
T Consensus       522 -------~l~~~~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~  588 (733)
T TIGR01243       522 -------EILSKWV------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL  588 (733)
T ss_pred             -------HHhhccc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence                   1111111      112223333333333456799999998642              1123344444431123


Q ss_pred             CCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          457 IGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       457 ~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+..||.||.... +...+-   .....+.++..+.++-.++|..+.
T Consensus       589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~  635 (733)
T TIGR01243       589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT  635 (733)
T ss_pred             CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence            3444555664443 222221   145688999999999999887553

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.00  E-value=3.9e-09  Score=99.37  Aligned_cols=165  Identities=16%  Similarity=0.175  Sum_probs=84.1

Q ss_pred             eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH-----
Q 010799          325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI-----  399 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i-----  399 (501)
                      |+||+.++++|.+++..+  ..+.+.|+|+.|+|||+|++.+.+  .....-...+|  +......+ ......+     
T Consensus         1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y--~~~~~~~~-~~~~~~~~~~~~   73 (234)
T PF01637_consen    1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVY--IDFLEESN-ESSLRSFIEETS   73 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCH--HCCTTBSH-HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEE--Eecccchh-hhHHHHHHHHHH
Confidence            799999999999998642  347899999999999999999988  44332223444  33322222 1122222     


Q ss_pred             -----HHHhccCCCC---------CCCCHHHHHHHHHHhcC--CceEEEEEcCCCChh-----------hHHHHHHhcCC
Q 010799          400 -----LRQLTQDEVD---------EESSLDDLESEFTGILY--EKRYLVVLDDVHSPG-----------AWYDLKRIFSP  452 (501)
Q Consensus       400 -----~~~l~~~~~~---------~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~~-----------~~~~l~~~l~~  452 (501)
                           ...+......         ...........+.+.+.  +++++|||||++...           .+..+...+..
T Consensus        74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~  153 (234)
T PF01637_consen   74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS  153 (234)
T ss_dssp             HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence                 1112111110         01112222333333332  235999999987754           11222233223


Q ss_pred             CCCCCCCEEEEEeCChHHHhh-------cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          453 QASPIGSRVILITREAYVARS-------FSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       453 ~~~~~~~~iIiTtR~~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                         .....+++++........       .-.....+.+++|+.+++++++....
T Consensus       154 ---~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~  204 (234)
T PF01637_consen  154 ---QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELF  204 (234)
T ss_dssp             ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHH
T ss_pred             ---cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHH
Confidence               344455566555544433       11134459999999999999998753

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.94  E-value=1.4e-08  Score=109.98  Aligned_cols=161  Identities=14%  Similarity=0.173  Sum_probs=88.3

Q ss_pred             ceeecchhHHHHHHHhhcC------CCC-ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHH
Q 010799          324 AVVSMENDILKLAKLTLNS------SDK-NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~~~------~~~-~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~  396 (501)
                      .++|.++.++.+...+...      ..+ ...+.++|++|+|||.+|+.++.  .....|   +.  ++++.-.. ..  
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~~~~---i~--id~se~~~-~~--  528 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALGIEL---LR--FDMSEYME-RH--  528 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhCCCc---EE--eechhhcc-cc--
Confidence            5899999999998887521      122 34789999999999999999988  332222   23  33332111 00  


Q ss_pred             HHHHHHhccCCCC-CCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEE
Q 010799          397 ADILRQLTQDEVD-EESSLDDLESEFTGILYEK-RYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVIL  463 (501)
Q Consensus       397 ~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIi  463 (501)
                       . ...+.+..+. .....   ...+.+.+..+ ..+|+||+++.  .+.++.|+..+....         ...++-+|+
T Consensus       529 -~-~~~LiG~~~gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~  603 (758)
T PRK11034        529 -T-VSRLIGAPPGYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVM  603 (758)
T ss_pred             -c-HHHHcCCCCCcccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEE
Confidence             1 1222221111 01111   11223333333 46999999986  455666666554300         012444777


Q ss_pred             EeCCh----------------------HHHhhcCC-----CCcceeCCCCChHHHHHHHHHhh
Q 010799          464 ITREA----------------------YVARSFSP-----SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       464 TtR~~----------------------~~~~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ||-..                      .+...+.+     ...++.+.+|+.++..++....+
T Consensus       604 TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l  666 (758)
T PRK11034        604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI  666 (758)
T ss_pred             eCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHH
Confidence            76511                      01111111     24588899999999888776543

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.90  E-value=2.3e-08  Score=106.21  Aligned_cols=175  Identities=16%  Similarity=0.186  Sum_probs=111.2

Q ss_pred             cceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHcccccc---cCCc--cceeEEEEeCCCCChHH
Q 010799          323 TAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYESSYTK---KNFP--CRAWANVYVSQDFDMRS  394 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~---~~f~--~~~w~~v~~~~~~~~~~  394 (501)
                      +.+.||++++++|...|..   +.....++.|+|++|+|||++++.++......   ....  .+++  |++....+...
T Consensus       755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVY--INCm~Lstp~s  832 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFE--INGMNVVHPNA  832 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEE--EeCCccCCHHH
Confidence            5689999999999998853   23333577899999999999999998743211   1122  1345  77777778888


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC--c-eEEEEEcCCCChh--hHHHHHHhcCCCCCCCCCEEEE--EeCC
Q 010799          395 VFADILRQLTQDEVDEESSLDDLESEFTGILYE--K-RYLVVLDDVHSPG--AWYDLKRIFSPQASPIGSRVIL--ITRE  467 (501)
Q Consensus       395 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~-r~LlVlDnv~~~~--~~~~l~~~l~~~~~~~~~~iIi--TtR~  467 (501)
                      ++..|+.++....+....+..+....+...+..  + ..+||||+++...  ..+.|...+.+. ...+++|++  +|..
T Consensus       833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~-~~s~SKLiLIGISNd  911 (1164)
T PTZ00112        833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP-TKINSKLVLIAISNT  911 (1164)
T ss_pred             HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh-hccCCeEEEEEecCc
Confidence            999999988554443333444556666655532  2 4589999998632  334444433331 233555544  3332


Q ss_pred             hH----HHhhcCC--CCcceeCCCCChHHHHHHHHHhhc
Q 010799          468 AY----VARSFSP--SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       468 ~~----~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      -.    +...+.+  ....+..+|++.++-.+++..++.
T Consensus       912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe  950 (1164)
T PTZ00112        912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE  950 (1164)
T ss_pred             hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence            11    1112211  223467899999999999998874

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=3.4e-07  Score=94.46  Aligned_cols=153  Identities=16%  Similarity=0.117  Sum_probs=91.5

Q ss_pred             cceeecchhHHHHHHHhhcCC-----------CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799          323 TAVVSMENDILKLAKLTLNSS-----------DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD  391 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~-----------~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~  391 (501)
                      +++-|..+..+-|.+.+.-++           .-..-|.++|++|+|||.||..++.  ...-     -|  +++..+  
T Consensus       667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~--~~~~-----~f--isvKGP--  735 (952)
T KOG0735|consen  667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIAS--NSNL-----RF--ISVKGP--  735 (952)
T ss_pred             eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHh--hCCe-----eE--EEecCH--
Confidence            456677777777777664432           1224699999999999999999887  2222     33  777654  


Q ss_pred             hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCCC
Q 010799          392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPIG  458 (501)
Q Consensus       392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~~  458 (501)
                            +++...-+.      +.+...+.+.+.-.-++|+|+||++++.             ...+.++..+.-...-.|
T Consensus       736 ------ElL~KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G  803 (952)
T KOG0735|consen  736 ------ELLSKYIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG  803 (952)
T ss_pred             ------HHHHHHhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence                  344443333      3455566666666779999999999872             234555555544212234


Q ss_pred             CEEEE-EeCChHHHhhcCC---CCcceeCCCCChHHHHHHHHHh
Q 010799          459 SRVIL-ITREAYVARSFSP---SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       459 ~~iIi-TtR~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      .-|+- |||-..+...+-+   -.+.+.-+..+..+-.+.|...
T Consensus       804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~l  847 (952)
T KOG0735|consen  804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVL  847 (952)
T ss_pred             EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHH
Confidence            44444 5665554443322   2334445556666666666543

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.83  E-value=1.8e-07  Score=103.76  Aligned_cols=44  Identities=14%  Similarity=0.114  Sum_probs=37.0

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++||+++.+.+++.|.....+  -+.++|.+|+|||++|+.+..
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~~~--n~lL~G~pGvGKTal~~~la~  222 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRTKN--NPILIGEPGVGKTAIAEGLAQ  222 (821)
T ss_pred             CCCCCcHHHHHHHHHHHcccccC--CeEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999865422  345999999999999988864

>PRK06893 DNA replication initiation factor; Validated

Probab=98.81  E-value=2.4e-08  Score=93.77  Aligned_cols=147  Identities=20%  Similarity=0.198  Sum_probs=84.8

Q ss_pred             cccceeecchhHHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ..++|+|-+... -+..+... .....+.+.|||++|+|||+|+..+++  ........+.|  +++.....   ..   
T Consensus        14 ~fd~f~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y--~~~~~~~~---~~---   82 (229)
T PRK06893         14 TLDNFYADNNLL-LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIY--IPLSKSQY---FS---   82 (229)
T ss_pred             cccccccCChHH-HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEE--eeHHHhhh---hh---
Confidence            456788655432 12211111 122346789999999999999999998  44444445566  55431100   00   


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHH-HHHHhcCCCCCCCCCEEEE-EeCC-------
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWY-DLKRIFSPQASPIGSRVIL-ITRE-------  467 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~-~l~~~l~~~~~~~~~~iIi-TtR~-------  467 (501)
                                         ..+.+.+. +.-+|+|||++..   ..|+ .+...+... ...+..+|+ |+..       
T Consensus        83 -------------------~~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~-~~~~~~illits~~~p~~l~~  141 (229)
T PRK06893         83 -------------------PAVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRI-KEQGKTLLLISADCSPHALSI  141 (229)
T ss_pred             -------------------HHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHH-HHcCCcEEEEeCCCChHHccc
Confidence                               01111111 2348999999862   3333 344434331 223555654 4443       


Q ss_pred             --hHHHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799          468 --AYVARSFSPSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       468 --~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                        +.+...+. .+.++++++++.++.+++|++.+.
T Consensus       142 ~~~~L~sRl~-~g~~~~l~~pd~e~~~~iL~~~a~  175 (229)
T PRK06893        142 KLPDLASRLT-WGEIYQLNDLTDEQKIIVLQRNAY  175 (229)
T ss_pred             cchhHHHHHh-cCCeeeCCCCCHHHHHHHHHHHHH
Confidence              34555544 567999999999999999998764

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.1e-07  Score=94.72  Aligned_cols=170  Identities=19%  Similarity=0.217  Sum_probs=118.2

Q ss_pred             eeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc--ceeEEEEeCCCCChHHHHHHHH
Q 010799          325 VVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC--RAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~--~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      +.+|+++++++...|..  .+..+..+.|+|++|+|||+.++.++.  ++......  +++  |+|....+...++..|+
T Consensus        19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~y--INc~~~~t~~~i~~~i~   94 (366)
T COG1474          19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVY--INCLELRTPYQVLSKIL   94 (366)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEE--EeeeeCCCHHHHHHHHH
Confidence            88999999999988753  234445699999999999999999998  55554432  466  99999999999999999


Q ss_pred             HHhccCCCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCChhhH--HHHHHhcCCCCCCCCCEE--EEEeCChHHHhhc
Q 010799          401 RQLTQDEVDEESSLDDLESEFTGILYE--KRYLVVLDDVHSPGAW--YDLKRIFSPQASPIGSRV--ILITREAYVARSF  474 (501)
Q Consensus       401 ~~l~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~~~~~--~~l~~~l~~~~~~~~~~i--IiTtR~~~~~~~~  474 (501)
                      .++..... ...+..+..+.+.+.+..  +.+++|||+++....-  +.+...+... ....++|  |..+-+......+
T Consensus        95 ~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~-~~~~~~v~vi~i~n~~~~~~~l  172 (366)
T COG1474          95 NKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAP-GENKVKVSIIAVSNDDKFLDYL  172 (366)
T ss_pred             HHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhc-cccceeEEEEEEeccHHHHHHh
Confidence            99973222 356677788888888865  5789999999873221  3333333331 1113433  3334333322222


Q ss_pred             CC------CCcceeCCCCChHHHHHHHHHhhc
Q 010799          475 SP------SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       475 ~~------~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      .+      ....+..+|.+.+|-.+.+..++.
T Consensus       173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~  204 (366)
T COG1474         173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVE  204 (366)
T ss_pred             hhhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence            21      234588999999999999988864

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.80  E-value=2.3e-07  Score=89.66  Aligned_cols=145  Identities=20%  Similarity=0.299  Sum_probs=87.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      ...++|+|++|+||||+++.+++.... ..+ ..+|  + +....+..+++..++..++.+..  ..+.......+..++
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~--~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l  115 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAK--L-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFL  115 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEee--e-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHH
Confidence            468999999999999999999884221 111 1122  2 23345667888888888866543  233333344444333


Q ss_pred             -----CCceEEEEEcCCCCh--hhHHHHHHhcCCCC--CCCCCEEEEEeCChHHHhhcC--------C-CCcceeCCCCC
Q 010799          426 -----YEKRYLVVLDDVHSP--GAWYDLKRIFSPQA--SPIGSRVILITREAYVARSFS--------P-SIFLHQLRPLN  487 (501)
Q Consensus       426 -----~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~--~~~~~~iIiTtR~~~~~~~~~--------~-~~~~~~l~~L~  487 (501)
                           .+++.+||+|+++..  ..++.+.. +....  ......|++|.... ....+.        + ....+.+++|+
T Consensus       116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~  193 (269)
T TIGR03015       116 IEQFAAGKRALLVVDEAQNLTPELLEELRM-LSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD  193 (269)
T ss_pred             HHHHhCCCCeEEEEECcccCCHHHHHHHHH-HhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence                 567889999999874  33444432 22210  12223455665433 221111        0 23467899999


Q ss_pred             hHHHHHHHHHhh
Q 010799          488 EEESGKLFQRRL  499 (501)
Q Consensus       488 ~~ea~~Lf~~~~  499 (501)
                      .+|..+++..++
T Consensus       194 ~~e~~~~l~~~l  205 (269)
T TIGR03015       194 REETREYIEHRL  205 (269)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988664

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.79  E-value=4.4e-08  Score=100.36  Aligned_cols=144  Identities=20%  Similarity=0.261  Sum_probs=89.2

Q ss_pred             ccceeecchhHHH---HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          322 VTAVVSMENDILK---LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       322 ~~~fvGR~~~~~~---l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .++|+|++..+..   |..++..  ...+.+.|+|++|+||||||+.+++  .....|.   .  ++...  .-...+. 
T Consensus        11 l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~--~~~~~~~---~--l~a~~--~~~~~ir-   78 (413)
T PRK13342         11 LDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAG--ATDAPFE---A--LSAVT--SGVKDLR-   78 (413)
T ss_pred             HHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---E--Eeccc--ccHHHHH-
Confidence            4679999988766   7777744  3456788999999999999999988  4333331   1  22221  1111111 


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE--EeCChH--HH
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL--ITREAY--VA  471 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi--TtR~~~--~~  471 (501)
                                       .+.+...... .+++.+|+||+++.  ....+.|+..+..     +..++|  ||.+..  +.
T Consensus        79 -----------------~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~-----~~iilI~att~n~~~~l~  136 (413)
T PRK13342         79 -----------------EVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED-----GTITLIGATTENPSFEVN  136 (413)
T ss_pred             -----------------HHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc-----CcEEEEEeCCCChhhhcc
Confidence                             1222222211 35678999999986  3456666666554     444554  344332  22


Q ss_pred             hhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          472 RSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       472 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..+.+...++.+.+++.++..++|.+.+
T Consensus       137 ~aL~SR~~~~~~~~ls~e~i~~lL~~~l  164 (413)
T PRK13342        137 PALLSRAQVFELKPLSEEDIEQLLKRAL  164 (413)
T ss_pred             HHHhccceeeEeCCCCHHHHHHHHHHHH
Confidence            2222245789999999999999998754

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=3.9e-06  Score=85.52  Aligned_cols=133  Identities=17%  Similarity=0.173  Sum_probs=80.5

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI  424 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~  424 (501)
                      .+.-|.+|||+|+|||-||+++++  .....|       +++..+        +++...-+..      ..-+.+.+.+.
T Consensus       544 ~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-------isVKGP--------ELlNkYVGES------ErAVR~vFqRA  600 (802)
T KOG0733|consen  544 APSGVLLCGPPGCGKTLLAKAVAN--EAGANF-------ISVKGP--------ELLNKYVGES------ERAVRQVFQRA  600 (802)
T ss_pred             CCCceEEeCCCCccHHHHHHHHhh--hccCce-------EeecCH--------HHHHHHhhhH------HHHHHHHHHHh
Confidence            456799999999999999999999  555555       777554        3333333222      22223333344


Q ss_pred             cCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCC
Q 010799          425 LYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSP---SIFLHQLRPLN  487 (501)
Q Consensus       425 l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~  487 (501)
                      -.+-+|+|+||+++..             ...+.|+--+.-...-.|.-||-.|-.+. +...+-.   -...+-|+..+
T Consensus       601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn  680 (802)
T KOG0733|consen  601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN  680 (802)
T ss_pred             hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence            3456999999999861             22344444433310133455555444333 3333322   45688888889


Q ss_pred             hHHHHHHHHHhhc
Q 010799          488 EEESGKLFQRRLK  500 (501)
Q Consensus       488 ~~ea~~Lf~~~~~  500 (501)
                      .+|-.++++....
T Consensus       681 ~~eR~~ILK~~tk  693 (802)
T KOG0733|consen  681 AEERVAILKTITK  693 (802)
T ss_pred             HHHHHHHHHHHhc
Confidence            9998888876643

>PF13173 AAA_14: AAA domain

Probab=98.74  E-value=4.4e-08  Score=83.23  Aligned_cols=120  Identities=18%  Similarity=0.271  Sum_probs=80.5

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      .+++.|.|+.|+|||||+++++.+  .. .....++  +++.........                 ..+ ..+.+.+..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~y--i~~~~~~~~~~~-----------------~~~-~~~~~~~~~   58 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILY--INFDDPRDRRLA-----------------DPD-LLEYFLELI   58 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--hc-cccccee--eccCCHHHHHHh-----------------hhh-hHHHHHHhh
Confidence            368999999999999999999873  22 2233455  554332111000                 000 223334443


Q ss_pred             CCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh-----cCCCCcceeCCCCChHH
Q 010799          426 YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS-----FSPSIFLHQLRPLNEEE  490 (501)
Q Consensus       426 ~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~-----~~~~~~~~~l~~L~~~e  490 (501)
                      ..++.+|+||+++...+|......+.+  ..+..+|++|+.+......     ..+....+++.||+..|
T Consensus        59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d--~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E  126 (128)
T PF13173_consen   59 KPGKKYIFIDEIQYLPDWEDALKFLVD--NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE  126 (128)
T ss_pred             ccCCcEEEEehhhhhccHHHHHHHHHH--hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence            346789999999999899988888888  5677899999988765533     11144578999999876

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.69  E-value=2.2e-08  Score=85.34  Aligned_cols=113  Identities=22%  Similarity=0.301  Sum_probs=79.5

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccC-----CccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKN-----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESE  420 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  420 (501)
                      .+++.|+|++|+|||+++..++.  .....     -..++|  +.+....+...+...++..+...... ..+..++.+.
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~   78 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLAR--QLNAEAEIKNHPDVIY--VNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSL   78 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHH--HHHHHHHHCCCEEEEE--EEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHH--HhHHhhhccCCCcEEE--EEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence            47899999999999999999988  33321     234568  88877779999999999999988763 4567788888


Q ss_pred             HHHhcCCce-EEEEEcCCCCh-h--hHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799          421 FTGILYEKR-YLVVLDDVHSP-G--AWYDLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       421 l~~~l~~~r-~LlVlDnv~~~-~--~~~~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                      +.+.+...+ .+||+|+++.. .  .++.+.. +.+   ..+.++|+..+.
T Consensus        79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~---~~~~~vvl~G~~  125 (131)
T PF13401_consen   79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN---ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC---SCBEEEEEEESS
T ss_pred             HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh---CCCCeEEEEECh
Confidence            888887654 59999999875 2  2233322 222   567788887764

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.69  E-value=1.6e-07  Score=96.03  Aligned_cols=144  Identities=14%  Similarity=0.078  Sum_probs=93.0

Q ss_pred             cccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHH
Q 010799          131 KKTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDIL  208 (501)
Q Consensus       131 ~~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~  208 (501)
                      .+..++||+++.++|...|...  +.....+-|+|.+|+|||++++.++++.......-..++|......+...++..++
T Consensus        28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~  107 (394)
T PRK00411         28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA  107 (394)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence            3567999999999999998542  22345577999999999999999997543222223345565566667889999999


Q ss_pred             HHhcCCCCc----CcchHHHHHHHHcc--CCeEEEEEecCCChh------HHHHHhhcCCCCCCCcE--EEEEeccccch
Q 010799          209 KQVGGSKVE----KQLDPQKKLRKLFT--ENRYLVVIINARTPD------IWDILKYLFPNSSNGSR--VILSFQEADAA  274 (501)
Q Consensus       209 ~~~~~~~~~----~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--iivTtr~~~va  274 (501)
                      +++......    ...+....+.+.++  ++..+||||+++.-.      .+..+...+.. ..+++  +|.++...++.
T Consensus       108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~  186 (394)
T PRK00411        108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFL  186 (394)
T ss_pred             HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchh
Confidence            998752211    12334566666664  456889999997532      23333322222 23444  66776666554


Q ss_pred             h
Q 010799          275 R  275 (501)
Q Consensus       275 ~  275 (501)
                      .
T Consensus       187 ~  187 (394)
T PRK00411        187 Y  187 (394)
T ss_pred             h
Confidence            3

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.67  E-value=3.6e-08  Score=97.07  Aligned_cols=162  Identities=17%  Similarity=0.086  Sum_probs=86.5

Q ss_pred             ccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      ..+|+|+++.++.|..++..   .......+.++|++|+|||+||+.+++  .....+   ..  ++....... ..+..
T Consensus         3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~--~~~~~~~~~-~~l~~   74 (305)
T TIGR00635         3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KI--TSGPALEKP-GDLAA   74 (305)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EE--eccchhcCc-hhHHH
Confidence            46799999999999988842   123456789999999999999999988  433222   11  221111111 11222


Q ss_pred             HHHHhccCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          399 ILRQLTQDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       399 i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      .+..+....-.     +..+ ......+...+.+.+..+|+++..+...+..      .  ..+.+-|..||+...+...
T Consensus        75 ~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~------~--~~~~~li~~t~~~~~l~~~  145 (305)
T TIGR00635        75 ILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL------D--LPPFTLVGATTRAGMLTSP  145 (305)
T ss_pred             HHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee------c--CCCeEEEEecCCccccCHH
Confidence            22222111100     0000 1112233333334444444444333222111      1  1234555667776544443


Q ss_pred             cCC-CCcceeCCCCChHHHHHHHHHhhc
Q 010799          474 FSP-SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       474 ~~~-~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      ..+ ....+.+++++.++..+++.+.++
T Consensus       146 l~sR~~~~~~l~~l~~~e~~~il~~~~~  173 (305)
T TIGR00635       146 LRDRFGIILRLEFYTVEELAEIVSRSAG  173 (305)
T ss_pred             HHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence            221 235789999999999999987764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.67  E-value=2.8e-07  Score=92.11  Aligned_cols=168  Identities=18%  Similarity=0.209  Sum_probs=93.5

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC-Cc-cceeEEEEeCCCCChHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN-FP-CRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~-~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ..+|+|++..++.|..++..+  ..+.+.++|++|+|||++|+.+++  ..... +. ..+.  ++++....  .....+
T Consensus        14 ~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~--i~~~~~~~--~~~~~~   85 (337)
T PRK12402         14 LEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTE--FNVADFFD--QGKKYL   85 (337)
T ss_pred             HHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEE--echhhhhh--cchhhh
Confidence            467999999999999988543  335688999999999999999887  33222 11 1223  44322110  000000


Q ss_pred             H------HHhccCCCCCCCCHHH---HHHHHHHhc--CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799          400 L------RQLTQDEVDEESSLDD---LESEFTGIL--YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITR  466 (501)
Q Consensus       400 ~------~~l~~~~~~~~~~~~~---~~~~l~~~l--~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR  466 (501)
                      .      ..+...........+.   +......+.  ...+-+||+||++..  .....+...+..  ....+++|+||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~--~~~~~~~Il~~~  163 (337)
T PRK12402         86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ--YSRTCRFIIATR  163 (337)
T ss_pred             hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh--ccCCCeEEEEeC
Confidence            0      0000000000001111   111222222  133458999999864  334556665555  445677888775


Q ss_pred             Ch-HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          467 EA-YVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       467 ~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +. .+...+.+....+.+.+++.++..+++.+.+
T Consensus       164 ~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~  197 (337)
T PRK12402        164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIA  197 (337)
T ss_pred             ChhhCchhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence            43 2222233345688999999999888887653

>PTZ00202 tuzin; Provisional

Probab=98.66  E-value=1.3e-06  Score=86.72  Aligned_cols=163  Identities=13%  Similarity=0.146  Sum_probs=103.2

Q ss_pred             cccceeecchhHHHHHHHhhcCC-CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSS-DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ...+|+||+.++..|...|.+.+ ..+++++|.|++|+|||||++.+...  ..  +. ..+  ++   ..+..+++..+
T Consensus       260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~~-qL~--vN---prg~eElLr~L  329 (550)
T PTZ00202        260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--MP-AVF--VD---VRGTEDTLRSV  329 (550)
T ss_pred             CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--ce-EEE--EC---CCCHHHHHHHH
Confidence            45689999999999999996433 33469999999999999999998873  22  11 222  22   22679999999


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcC------CceEEEEE--cCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILY------EKRYLVVL--DDVHSP-GAWYDLKRIFSPQASPIGSRVILITREAYV  470 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~------~~r~LlVl--Dnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~  470 (501)
                      +.+|+.+..   ....++...+.+.+.      +++.+||+  -+-.+. ...++... |-.  ...-|+|++----+.+
T Consensus       330 L~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~--drr~ch~v~evplesl  403 (550)
T PTZ00202        330 VKALGVPNV---EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LAC--DRRLCHVVIEVPLESL  403 (550)
T ss_pred             HHHcCCCCc---ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHc--cchhheeeeeehHhhc
Confidence            999997432   233445555555442      44555554  333332 22222222 222  2345778876554432


Q ss_pred             Hhh--cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          471 ARS--FSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       471 ~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .-.  .-+.-..|.+++++.++|.++-...+
T Consensus       404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~  434 (550)
T PTZ00202        404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI  434 (550)
T ss_pred             chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence            221  11244588999999999999877654

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.65  E-value=2.8e-07  Score=97.53  Aligned_cols=166  Identities=14%  Similarity=0.212  Sum_probs=100.1

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      .++++||.+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+.+.......+..         ..+.....+..+.
T Consensus        14 tFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---------~PCG~C~sCr~I~   83 (830)
T PRK07003         14 DFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---------QPCGVCRACREID   83 (830)
T ss_pred             cHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---------CCCcccHHHHHHh
Confidence            3578999999999999998543 23457789999999999999988874321111110         0111111111111


Q ss_pred             HH-----hccCCCCCCCCHHHHHHHHHHhc----CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 010799          401 RQ-----LTQDEVDEESSLDDLESEFTGIL----YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA-  468 (501)
Q Consensus       401 ~~-----l~~~~~~~~~~~~~~~~~l~~~l----~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~-  468 (501)
                      ..     +..+.. .....+++...+....    .++.-++|||+++..  ..++.|+..+..  ...++++|+||.+. 
T Consensus        84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE--PP~~v~FILaTtd~~  160 (830)
T PRK07003         84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE--PPPHVKFILATTDPQ  160 (830)
T ss_pred             cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh--cCCCeEEEEEECChh
Confidence            10     000000 1112333333222211    234558889999874  447888888877  56678888877764 


Q ss_pred             HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          469 YVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+...+.+.-..+.+.+++.++..+.|.+.+
T Consensus       161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il  191 (830)
T PRK07003        161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERIL  191 (830)
T ss_pred             hccchhhhheEEEecCCcCHHHHHHHHHHHH
Confidence            3433333355689999999999998887654

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.65  E-value=1.5e-07  Score=90.01  Aligned_cols=147  Identities=18%  Similarity=0.203  Sum_probs=90.3

Q ss_pred             cceeecchhHH---HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          323 TAVVSMENDIL---KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       323 ~~fvGR~~~~~---~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      .+.||.+..+.   .|.+++.  .++.+.+.+||++|+|||+||+.+..  ..+.+  ...|  |..+-...-..-++++
T Consensus       138 ~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~--tsk~~--Syrf--velSAt~a~t~dvR~i  209 (554)
T KOG2028|consen  138 DDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIAS--TSKKH--SYRF--VELSATNAKTNDVRDI  209 (554)
T ss_pred             HHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHh--hcCCC--ceEE--EEEeccccchHHHHHH
Confidence            44555443332   2344443  35667899999999999999999987  33332  1345  6554443333333444


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE--EeCChHHH---h
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL--ITREAYVA---R  472 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi--TtR~~~~~---~  472 (501)
                      .++-...                ..+..+|.+|++|++..  ..+.+.|++   .  -..|.-++|  ||.++...   .
T Consensus       210 fe~aq~~----------------~~l~krkTilFiDEiHRFNksQQD~fLP---~--VE~G~I~lIGATTENPSFqln~a  268 (554)
T KOG2028|consen  210 FEQAQNE----------------KSLTKRKTILFIDEIHRFNKSQQDTFLP---H--VENGDITLIGATTENPSFQLNAA  268 (554)
T ss_pred             HHHHHHH----------------HhhhcceeEEEeHHhhhhhhhhhhcccc---e--eccCceEEEecccCCCccchhHH
Confidence            3332211                12346789999999975  445555544   4  344777776  77766522   2


Q ss_pred             hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          473 SFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       473 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .++ .-.++-|++|..++-..++++.+
T Consensus       269 LlS-RC~VfvLekL~~n~v~~iL~rai  294 (554)
T KOG2028|consen  269 LLS-RCRVFVLEKLPVNAVVTILMRAI  294 (554)
T ss_pred             HHh-ccceeEeccCCHHHHHHHHHHHH
Confidence            222 55689999999999999888743

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.63  E-value=5.8e-07  Score=90.46  Aligned_cols=166  Identities=13%  Similarity=0.228  Sum_probs=97.1

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.+...+.|.+.+..+ .-++.+.++|++|+||||+|+.+++.......+..         .++.......++.
T Consensus        14 ~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~---------~pc~~c~~c~~~~   83 (363)
T PRK14961         14 YFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS---------NPCRKCIICKEIE   83 (363)
T ss_pred             chhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCCCCHHHHHHh
Confidence            3477999999999999988643 33467899999999999999999873221111100         0000001111111


Q ss_pred             HHhccC----CCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 010799          401 RQLTQD----EVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA-  468 (501)
Q Consensus       401 ~~l~~~----~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~-  468 (501)
                      ......    ........++.. .+.+.+     .+++-++|+|+++..  ..++.++..+..  .+..+++|++|.+. 
T Consensus        84 ~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe--~~~~~~fIl~t~~~~  160 (363)
T PRK14961         84 KGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE--PPQHIKFILATTDVE  160 (363)
T ss_pred             cCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc--CCCCeEEEEEcCChH
Confidence            110000    000001122221 121221     234569999999874  357788888877  56677777766543 


Q ss_pred             HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          469 YVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+...+.+....+++.+++.++..+.+.+.+
T Consensus       161 ~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~  191 (363)
T PRK14961        161 KIPKTILSRCLQFKLKIISEEKIFNFLKYIL  191 (363)
T ss_pred             hhhHHHHhhceEEeCCCCCHHHHHHHHHHHH
Confidence            3443433355789999999999988877643

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.62  E-value=8e-08  Score=87.08  Aligned_cols=50  Identities=26%  Similarity=0.378  Sum_probs=33.6

Q ss_pred             ceeecchhHHHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccC
Q 010799          324 AVVSMENDILKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN  375 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~  375 (501)
                      +|+||++++++|...+. ......+.+.|+|++|+|||+|.++++.  .....
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~   51 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER   51 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence            48999999999999993 2334568999999999999999999888  44443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.61  E-value=4.7e-07  Score=102.73  Aligned_cols=163  Identities=19%  Similarity=0.234  Sum_probs=101.5

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeC-CCCChHHHHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVS-QDFDMRSVFADILR  401 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~-~~~~~~~~~~~i~~  401 (501)
                      .++|-|..-++.|..     ....+++.|.|++|.||||++..+..  .    ++.+.|  +++. .+.++......++.
T Consensus        14 ~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w--~~l~~~d~~~~~f~~~l~~   80 (903)
T PRK04841         14 HNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAA--G----KNNLGW--YSLDESDNQPERFASYLIA   80 (903)
T ss_pred             cccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHH--h----CCCeEE--EecCcccCCHHHHHHHHHH
Confidence            456777766665543     24568999999999999999999876  2    226889  9885 44466666667666


Q ss_pred             HhccCCCC------------CCCCHHHHHHHHHHhcC--CceEEEEEcCCCChh--hHH-HHHHhcCCCCCCCCCEEEEE
Q 010799          402 QLTQDEVD------------EESSLDDLESEFTGILY--EKRYLVVLDDVHSPG--AWY-DLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       402 ~l~~~~~~------------~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~~--~~~-~l~~~l~~~~~~~~~~iIiT  464 (501)
                      .+......            ...+.......+...+.  ..+++|||||+...+  ... .+...+..  ..++.++|||
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~--~~~~~~lv~~  158 (903)
T PRK04841         81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH--QPENLTLVVL  158 (903)
T ss_pred             HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh--CCCCeEEEEE
Confidence            66422111            01222333443433333  578999999997642  222 33333333  4557889999


Q ss_pred             eCChHHHh--hcCCCCcceeCC----CCChHHHHHHHHHhhc
Q 010799          465 TREAYVAR--SFSPSIFLHQLR----PLNEEESGKLFQRRLK  500 (501)
Q Consensus       465 tR~~~~~~--~~~~~~~~~~l~----~L~~~ea~~Lf~~~~~  500 (501)
                      ||...-..  ..........+.    +|+.+|+.+||....+
T Consensus       159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~  200 (903)
T PRK04841        159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS  200 (903)
T ss_pred             eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC
Confidence            99842111  110023355666    9999999999976543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.60  E-value=5.2e-07  Score=77.91  Aligned_cols=125  Identities=20%  Similarity=0.096  Sum_probs=71.2

Q ss_pred             eecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhcc
Q 010799          326 VSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQ  405 (501)
Q Consensus       326 vGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~  405 (501)
                      +|++..+..+...+...  ..+.+.|+|++|+|||++++.+++  .....-..+++  +.+............+...   
T Consensus         1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~---   71 (151)
T cd00009           1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLY--LNASDLLEGLVVAELFGHF---   71 (151)
T ss_pred             CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEE--EehhhhhhhhHHHHHhhhh---
Confidence            37888889998888542  346899999999999999999998  33322233445  5543322211111000000   


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCC-C---CCCCEEEEEeCChH
Q 010799          406 DEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQA-S---PIGSRVILITREAY  469 (501)
Q Consensus       406 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~-~---~~~~~iIiTtR~~~  469 (501)
                                ............++.+|++||++..  .....+...+.... .   ..+..+|+||....
T Consensus        72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence                      0011112222346789999999863  22333444333310 1   36788888887653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.60  E-value=2.4e-07  Score=92.09  Aligned_cols=48  Identities=19%  Similarity=0.190  Sum_probs=40.3

Q ss_pred             cccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+|+|+++.++.+..++..   .+...+.+.|+|++|+|||+||+.+++
T Consensus        23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~   73 (328)
T PRK00080         23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN   73 (328)
T ss_pred             CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH
Confidence            357899999999999888743   234456889999999999999999998

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.8e-06  Score=88.97  Aligned_cols=154  Identities=13%  Similarity=0.106  Sum_probs=93.4

Q ss_pred             ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      -+++-|-++...+|.+.+..           +-..++-|.+|||||+|||++|+.+++  ...-.|       ++++.+ 
T Consensus       433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-------lsvkgp-  502 (693)
T KOG0730|consen  433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-------LSVKGP-  502 (693)
T ss_pred             hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-------eeccCH-
Confidence            35566777777777655432           225668999999999999999999999  444444       555432 


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPI  457 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~  457 (501)
                             ++.....      ..+...+.+.+...=+.-+++|.||+++..             ..+..|+..+.-  ...
T Consensus       503 -------EL~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG--~e~  567 (693)
T KOG0730|consen  503 -------ELFSKYV------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG--LEA  567 (693)
T ss_pred             -------HHHHHhc------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccc--ccc
Confidence                   2222222      223334444444444455799999999862             112333333333  222


Q ss_pred             CCEEEE---EeCChHHHhhcCC---CCcceeCCCCChHHHHHHHHHhhc
Q 010799          458 GSRVIL---ITREAYVARSFSP---SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       458 ~~~iIi---TtR~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      ...|+|   |.|-..+...+-+   -..++.+++.+.+.-.++|+.++.
T Consensus       568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k  616 (693)
T KOG0730|consen  568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK  616 (693)
T ss_pred             cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence            223333   4555555444433   467899999999999999988764

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.58  E-value=7.6e-08  Score=90.81  Aligned_cols=88  Identities=11%  Similarity=-0.044  Sum_probs=62.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC--CCHHHHHHHHH-----HHhcCCCCcCcc---hHHHH
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE--LERRELVTDIL-----KQVGGSKVEKQL---DPQKK  225 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~--~~~~~l~~~i~-----~~~~~~~~~~~~---~~~~~  225 (501)
                      -..++|+|.+|+|||||++.+|++.... +|+..+|++++++  ++..++++.+.     .+++.+......   .....
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~   94 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK   94 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence            3578999999999999999999876655 9999999998777  89999999993     333321111000   11222


Q ss_pred             HHHH-ccCCeEEEEEecCCC
Q 010799          226 LRKL-FTENRYLVVIINART  244 (501)
Q Consensus       226 l~~~-l~~kr~LlVlDdv~~  244 (501)
                      .... -.+++.++++|++..
T Consensus        95 a~~~~~~G~~vll~iDei~r  114 (249)
T cd01128          95 AKRLVEHGKDVVILLDSITR  114 (249)
T ss_pred             HHHHHHCCCCEEEEEECHHH
Confidence            2222 358999999999854

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF05729 NACHT: NACHT domain

Probab=98.58  E-value=1e-07  Score=84.60  Aligned_cols=115  Identities=17%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccc----cceeEEEEcCCCCCHH---HHHHHHHHHhcCCCCcCcchHHHHHHHH
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEY----FQCRAWVPVPEELERR---ELVTDILKQVGGSKVEKQLDPQKKLRKL  229 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~----F~~~~wv~vs~~~~~~---~l~~~i~~~~~~~~~~~~~~~~~~l~~~  229 (501)
                      +++.|+|.+|+||||+++.+...-.-...    |...+|++........   .+...+..+.....    ......+...
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~~   76 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEELLQEL   76 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHHHHHHH
Confidence            47899999999999999998864333322    4566677665543332   34444444433221    1111122222


Q ss_pred             -ccCCeEEEEEecCCChhH---------HHH-HhhcCCC-CCCCcEEEEEeccccchh
Q 010799          230 -FTENRYLVVIINARTPDI---------WDI-LKYLFPN-SSNGSRVILSFQEADAAR  275 (501)
Q Consensus       230 -l~~kr~LlVlDdv~~~~~---------~~~-l~~~~~~-~~~gs~iivTtr~~~va~  275 (501)
                       .+.++++||||++.....         +.. +...++. ..+++++|||+|......
T Consensus        77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~  134 (166)
T PF05729_consen   77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD  134 (166)
T ss_pred             HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH
Confidence             267899999999754211         222 2233332 256899999999887744

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.57  E-value=4.2e-07  Score=98.19  Aligned_cols=145  Identities=21%  Similarity=0.286  Sum_probs=88.4

Q ss_pred             cccceeecchhHH---HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHH
Q 010799          321 EVTAVVSMENDIL---KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       321 ~~~~fvGR~~~~~---~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~  397 (501)
                      ..++|+|.+..+.   .|.+.+..  .+...+.|+|++|+||||||+.+++  .....|.   .  +++.. ....+   
T Consensus        26 tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~--lna~~-~~i~d---   92 (725)
T PRK13341         26 TLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---S--LNAVL-AGVKD---   92 (725)
T ss_pred             cHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---e--ehhhh-hhhHH---
Confidence            3577999998884   56666643  3456789999999999999999998  4444441   1  22211 00000   


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhc--CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEE--eCChH--
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGIL--YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILI--TREAY--  469 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiT--tR~~~--  469 (501)
                                      ..+......+.+  .+++.+|+||+++.  ...++.|...+..     +..++|+  |.+..  
T Consensus        93 ----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~-----g~IiLI~aTTenp~~~  151 (725)
T PRK13341         93 ----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN-----GTITLIGATTENPYFE  151 (725)
T ss_pred             ----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC-----ceEEEEEecCCChHhh
Confidence                            111122222222  13567999999975  4556666665444     5555553  34432  


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +.....+...++.+++|+.++...++.+.+
T Consensus       152 l~~aL~SR~~v~~l~pLs~edi~~IL~~~l  181 (725)
T PRK13341        152 VNKALVSRSRLFRLKSLSDEDLHQLLKRAL  181 (725)
T ss_pred             hhhHhhccccceecCCCCHHHHHHHHHHHH
Confidence            222222245689999999999999988754

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.57  E-value=5.5e-07  Score=90.81  Aligned_cols=155  Identities=13%  Similarity=0.120  Sum_probs=90.3

Q ss_pred             ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..++.|+++.+++|.+.+...           -..++.+.|+|++|+|||++|+.+++  .....|       +.+..  
T Consensus       121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-------~~v~~--  189 (364)
T TIGR01242       121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-------IRVVG--  189 (364)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-------Eecch--
Confidence            467999999999998877421           12346799999999999999999998  444333       33221  


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~  454 (501)
                        ..+    .......      ....+...+...-...+.+|+||+++..                ..+..++..+....
T Consensus       190 --~~l----~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~  257 (364)
T TIGR01242       190 --SEL----VRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD  257 (364)
T ss_pred             --HHH----HHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence              111    1111100      0111112222222345789999998753                11223333332210


Q ss_pred             CCCCCEEEEEeCChHH-HhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAYV-ARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~~-~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+..||.||..... ...+.   .....+.++.++.++..++|..++
T Consensus       258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~  306 (364)
T TIGR01242       258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT  306 (364)
T ss_pred             CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH
Confidence            2346678888765431 11111   134678999999999999998765

Many proteins may score above the trusted cutoff because an internal

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.57  E-value=3.8e-07  Score=85.61  Aligned_cols=143  Identities=20%  Similarity=0.239  Sum_probs=83.4

Q ss_pred             ccceee--cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          322 VTAVVS--MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       322 ~~~fvG--R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      .++|++  ....++.+.+++..  ...+.+.|+|++|+|||+||+.+++  ..........+  +++..-.+      ..
T Consensus        14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~--i~~~~~~~------~~   81 (226)
T TIGR03420        14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIY--LPLAELAQ------AD   81 (226)
T ss_pred             hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEE--EeHHHHHH------hH
Confidence            345553  34467777776532  3457899999999999999999987  43333333444  55432110      00


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh---h-HHHHHHhcCCCCCCCCCEEEEEeCChH------
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG---A-WYDLKRIFSPQASPIGSRVILITREAY------  469 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~---~-~~~l~~~l~~~~~~~~~~iIiTtR~~~------  469 (501)
                                     .    .+...+.. .-+|||||++...   . ...+...+... ...+..+|+||+...      
T Consensus        82 ---------------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~-~~~~~~iIits~~~~~~~~~~  140 (226)
T TIGR03420        82 ---------------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRV-REAGGRLLIAGRAAPAQLPLR  140 (226)
T ss_pred             ---------------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHH-HHcCCeEEEECCCChHHCCcc
Confidence                           0    01111222 2389999998642   2 34444433321 123457888887532      


Q ss_pred             ---HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          470 ---VARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       470 ---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                         +...+. ....+++++++.++...++...
T Consensus       141 ~~~L~~r~~-~~~~i~l~~l~~~e~~~~l~~~  171 (226)
T TIGR03420       141 LPDLRTRLA-WGLVFQLPPLSDEEKIAALQSR  171 (226)
T ss_pred             cHHHHHHHh-cCeeEecCCCCHHHHHHHHHHH
Confidence               122221 2467999999999999888764

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.57  E-value=1.5e-07  Score=97.88  Aligned_cols=169  Identities=20%  Similarity=0.187  Sum_probs=98.2

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ..++++|.+.....|..++..+ .-.+.+.++|++|+||||+|+.+++.......+...+|  .+.+. ..+........
T Consensus        12 ~~~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg--~C~sc-~~i~~~~h~dv   87 (504)
T PRK14963         12 TFDEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCG--ECESC-LAVRRGAHPDV   87 (504)
T ss_pred             CHHHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCC--cChhh-HHHhcCCCCce
Confidence            3477999999999999888653 23356799999999999999999875432222222233  21100 00000000000


Q ss_pred             HHhccCCCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHh
Q 010799          401 RQLTQDEVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYVAR  472 (501)
Q Consensus       401 ~~l~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~  472 (501)
                      ..+...   .....+.+. .+.+.+     .+++-++|||+++.  ...++.|+..+..  ....+.+|++|.. ..+..
T Consensus        88 ~el~~~---~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~  161 (504)
T PRK14963         88 LEIDAA---SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE--PPEHVIFILATTEPEKMPP  161 (504)
T ss_pred             EEeccc---ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh--CCCCEEEEEEcCChhhCCh
Confidence            000000   011222221 122222     24566899999986  3557888888877  4556666665543 34433


Q ss_pred             hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          473 SFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       473 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+.+....+++.+++.++..+.+.+.+
T Consensus       162 ~I~SRc~~~~f~~ls~~el~~~L~~i~  188 (504)
T PRK14963        162 TILSRTQHFRFRRLTEEEIAGKLRRLL  188 (504)
T ss_pred             HHhcceEEEEecCCCHHHHHHHHHHHH
Confidence            343355689999999999999887754

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.56  E-value=1.1e-06  Score=90.67  Aligned_cols=163  Identities=16%  Similarity=0.195  Sum_probs=93.6

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ..++++|.+.....|...+..+ .-++.+.++|++|+||||+|+.+++.........   +      .++........+.
T Consensus        12 ~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---~------~pc~~c~~c~~i~   81 (472)
T PRK14962         12 TFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---V------EPCNECRACRSID   81 (472)
T ss_pred             CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C------CCCcccHHHHHHh
Confidence            3577999999888888877543 2335689999999999999999887321111000   0      0000000001110


Q ss_pred             H-------HhccCCCCCCCCHHHHHHHHHHh-----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799          401 R-------QLTQDEVDEESSLDDLESEFTGI-----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR  466 (501)
Q Consensus       401 ~-------~l~~~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR  466 (501)
                      .       .+...   .....+++. .+.+.     ..+++-++|+|+++.  ...++.|+..+..  .+..+.+|++|.
T Consensus        82 ~g~~~dv~el~aa---~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~--p~~~vv~Ilatt  155 (472)
T PRK14962         82 EGTFMDVIELDAA---SNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE--PPSHVVFVLATT  155 (472)
T ss_pred             cCCCCccEEEeCc---ccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh--CCCcEEEEEEeC
Confidence            0       00000   011122221 12222     224567999999986  3456777777776  444555555544


Q ss_pred             C-hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          467 E-AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       467 ~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      + ..+...+.+...++++.+++.++....+.+.+
T Consensus       156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~  189 (472)
T PRK14962        156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVA  189 (472)
T ss_pred             ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHH
Confidence            4 34544444466789999999999888887654

>PRK08727 hypothetical protein; Validated

Probab=98.56  E-value=6e-07  Score=84.51  Aligned_cols=145  Identities=16%  Similarity=0.240  Sum_probs=84.2

Q ss_pred             cccceeecchh-HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          321 EVTAVVSMEND-ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~-~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      .+++|++.... +..+..+..+  .....+.|+|++|+|||.|+..+++  ........+.|  +++..      ....+
T Consensus        17 ~f~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y--~~~~~------~~~~~   84 (233)
T PRK08727         17 RFDSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAY--LPLQA------AAGRL   84 (233)
T ss_pred             ChhhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--EeHHH------hhhhH
Confidence            45677766544 3323333222  2335699999999999999999988  44443334455  54321      11000


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCChH------
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREAY------  469 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~~------  469 (501)
                                        .+.+..+  .+.-+||+||++..    .....+...+... ...+..+|+||+...      
T Consensus        85 ------------------~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~-~~~~~~vI~ts~~~p~~l~~~  143 (233)
T PRK08727         85 ------------------RDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRA-RAAGITLLYTARQMPDGLALV  143 (233)
T ss_pred             ------------------HHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHH-HHcCCeEEEECCCChhhhhhh
Confidence                              1111111  12348999999852    2223444433321 234677999998532      


Q ss_pred             ---HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 ---VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                         +...+. ...++++++++.++-.+++.+++
T Consensus       144 ~~dL~SRl~-~~~~~~l~~~~~e~~~~iL~~~a  175 (233)
T PRK08727        144 LPDLRSRLA-QCIRIGLPVLDDVARAAVLRERA  175 (233)
T ss_pred             hHHHHHHHh-cCceEEecCCCHHHHHHHHHHHH
Confidence               222222 35689999999999999999865

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.55  E-value=6.5e-07  Score=96.66  Aligned_cols=167  Identities=15%  Similarity=0.204  Sum_probs=98.4

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      .+.+++|.+..+..|.+++..+ .-.+.+.++|+.|+||||+|+.+++...........         .+........+.
T Consensus        14 tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---------pCg~C~sC~~i~   83 (944)
T PRK14949         14 TFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---------PCGVCSSCVEIA   83 (944)
T ss_pred             CHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---------CCCCchHHHHHh
Confidence            3578999999999999998643 223556899999999999999998843211111100         000001111111


Q ss_pred             HHhcc---CCCC-CCCCHHH---HHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799          401 RQLTQ---DEVD-EESSLDD---LESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY  469 (501)
Q Consensus       401 ~~l~~---~~~~-~~~~~~~---~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~  469 (501)
                      .....   .... .....+.   +.+.+... ..+++-++|||+++.  ...++.|+..+-.  ....+++|++|.+ ..
T Consensus        84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE--PP~~vrFILaTTe~~k  161 (944)
T PRK14949         84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE--PPEHVKFLLATTDPQK  161 (944)
T ss_pred             cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--cCCCeEEEEECCCchh
Confidence            10000   0000 0011222   22222111 134567999999986  5677888888887  5666777666554 44


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+.-..+++.+|+.++..+++.+.+
T Consensus       162 Ll~TIlSRCq~f~fkpLs~eEI~~~L~~il  191 (944)
T PRK14949        162 LPVTVLSRCLQFNLKSLTQDEIGTQLNHIL  191 (944)
T ss_pred             chHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence            443333345789999999999998887754

>PLN03025 replication factor C subunit; Provisional

Probab=98.55  E-value=7e-07  Score=88.34  Aligned_cols=158  Identities=16%  Similarity=0.257  Sum_probs=92.7

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.++.+..|..++..+  +.+.+.++|++|+|||++|..+++.. ....|...+. .++.+..... +.++++.
T Consensus        11 ~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~-eln~sd~~~~-~~vr~~i   85 (319)
T PLN03025         11 KLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVL-ELNASDDRGI-DVVRNKI   85 (319)
T ss_pred             CHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH-hcccCcccee-eecccccccH-HHHHHHH
Confidence            3477999999999998887543  33557899999999999999988832 1122221111 0222222111 1222222


Q ss_pred             HHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHhhcCCC
Q 010799          401 RQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYVARSFSPS  477 (501)
Q Consensus       401 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~~~~~~  477 (501)
                      ..+.....              ....++.-+++||+++.  ....+.|...+..  .+..+++|+++.. ..+...+.+.
T Consensus        86 ~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~--~~~~t~~il~~n~~~~i~~~L~SR  149 (319)
T PLN03025         86 KMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI--YSNTTRFALACNTSSKIIEPIQSR  149 (319)
T ss_pred             HHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc--ccCCceEEEEeCCccccchhHHHh
Confidence            21111100              00013466899999987  3445666666655  4556777776643 2222222224


Q ss_pred             CcceeCCCCChHHHHHHHHHhh
Q 010799          478 IFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       478 ~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+++++++.++..+.+.+.+
T Consensus       150 c~~i~f~~l~~~~l~~~L~~i~  171 (319)
T PLN03025        150 CAIVRFSRLSDQEILGRLMKVV  171 (319)
T ss_pred             hhcccCCCCCHHHHHHHHHHHH
Confidence            4689999999999988887654

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.54  E-value=1.3e-06  Score=90.63  Aligned_cols=170  Identities=19%  Similarity=0.160  Sum_probs=100.2

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc-ceeEEEEeCCCCChHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC-RAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~-~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ...+++|.+..+..|...+..+ .-.+.+.++|++|+||||+|+.+++.......... ..+  ..|    .....+..+
T Consensus        19 ~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~--~~C----~~C~~C~~i   91 (507)
T PRK06645         19 NFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI--KTC----EQCTNCISF   91 (507)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc--CCC----CCChHHHHH
Confidence            4577999999999998877543 33468899999999999999999874322111100 000  000    000111111


Q ss_pred             HHHhccCC----CCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE-EeCCh
Q 010799          400 LRQLTQDE----VDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL-ITREA  468 (501)
Q Consensus       400 ~~~l~~~~----~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi-TtR~~  468 (501)
                      ........    .......+++...+...    ..+++-++|+|+++.  ...++.|+..+..  ..+.+.+|+ ||+..
T Consensus        92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe--pp~~~vfI~aTte~~  169 (507)
T PRK06645         92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE--PPPHIIFIFATTEVQ  169 (507)
T ss_pred             hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh--cCCCEEEEEEeCChH
Confidence            11000000    00011222222222211    234567899999986  4567888888887  566666655 55555


Q ss_pred             HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          469 YVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+...+.+....+++.+++.++..+.+.+.+
T Consensus       170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~  200 (507)
T PRK06645        170 KIPATIISRCQRYDLRRLSFEEIFKLLEYIT  200 (507)
T ss_pred             HhhHHHHhcceEEEccCCCHHHHHHHHHHHH
Confidence            6655554455689999999999999888765

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.54  E-value=7.4e-07  Score=93.19  Aligned_cols=169  Identities=15%  Similarity=0.174  Sum_probs=99.3

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC--CccceeEEEEeCCCCChHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN--FPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~--f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .+.++||.+...+.|.+.+..+ .-.+.+.++|+.|+||||+|+.+.+.......  -....      ...+.....+..
T Consensus        14 tFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~------~~PCG~C~sC~~   86 (700)
T PRK12323         14 DFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT------AQPCGQCRACTE   86 (700)
T ss_pred             cHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC------CCCCcccHHHHH
Confidence            4578999999999999999643 33467799999999999999998874321100  00000      001111111111


Q ss_pred             HHHH-----hccCCCCCCCCHHHHHHHHHHhc----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC-
Q 010799          399 ILRQ-----LTQDEVDEESSLDDLESEFTGIL----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR-  466 (501)
Q Consensus       399 i~~~-----l~~~~~~~~~~~~~~~~~l~~~l----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR-  466 (501)
                      |...     +..... .....+++.+.+....    .++.-++|||+++.  ...++.|+..+..  ...++.+|++|. 
T Consensus        87 I~aG~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE--PP~~v~FILaTte  163 (700)
T PRK12323         87 IDAGRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE--PPEHVKFILATTD  163 (700)
T ss_pred             HHcCCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc--CCCCceEEEEeCC
Confidence            1110     000000 1122333333333221    34566999999986  4667888888877  556666555554 


Q ss_pred             ChHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          467 EAYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       467 ~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+...+.+.-..+.+..++.++..+.+.+.+
T Consensus       164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il  196 (700)
T PRK12323        164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAIL  196 (700)
T ss_pred             hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence            445544444345689999999999888877543

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.52  E-value=1.2e-06  Score=91.88  Aligned_cols=167  Identities=14%  Similarity=0.198  Sum_probs=98.7

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.+...+.|.+++..+ .-.+.+.++|+.|+||||+|+.+++......      +  +. ...+.....+..+.
T Consensus        13 tFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~--~~-~~pCg~C~sC~~I~   82 (702)
T PRK14960         13 NFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCET------G--VT-STPCEVCATCKAVN   82 (702)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------C--CC-CCCCccCHHHHHHh
Confidence            4578999999999999999643 2346889999999999999999887321111      1  10 00111111111111


Q ss_pred             HHhccC----CCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799          401 RQLTQD----EVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-Y  469 (501)
Q Consensus       401 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~  469 (501)
                      ..-..+    ........+++...+.+.    ..++.-++|||+++.  ....+.|+..+..  ...++++|++|.+. .
T Consensus        83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE--PP~~v~FILaTtd~~k  160 (702)
T PRK14960         83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE--PPEHVKFLFATTDPQK  160 (702)
T ss_pred             cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--CCCCcEEEEEECChHh
Confidence            100000    000011222222222211    124566899999986  3567788888777  56677788777653 2


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+....+++.+++.++..+.+.+.+
T Consensus       161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il  190 (702)
T PRK14960        161 LPITVISRCLQFTLRPLAVDEITKHLGAIL  190 (702)
T ss_pred             hhHHHHHhhheeeccCCCHHHHHHHHHHHH
Confidence            322222255799999999999988887644

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.52  E-value=7.2e-07  Score=90.84  Aligned_cols=167  Identities=12%  Similarity=0.113  Sum_probs=96.6

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++..........     ..+....+    ...+.
T Consensus        16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~-----~pCg~C~s----C~~i~   85 (484)
T PRK14956         16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN-----EPCNECTS----CLEIT   85 (484)
T ss_pred             CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc-----cccCCCcH----HHHHH
Confidence            35789999999999999886432 2356899999999999999999883211110000     00111111    11111


Q ss_pred             HHhccCC----CCCCCCHHH---HHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CChH
Q 010799          401 RQLTQDE----VDEESSLDD---LESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-REAY  469 (501)
Q Consensus       401 ~~l~~~~----~~~~~~~~~---~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~~~  469 (501)
                      .......    .......++   +.+.+... ..++.-++|||+++.  ...++.|+..+..  .......|++| ....
T Consensus        86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE--Pp~~viFILaTte~~k  163 (484)
T PRK14956         86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE--PPAHIVFILATTEFHK  163 (484)
T ss_pred             ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc--CCCceEEEeecCChhh
Confidence            1111000    000111222   22222211 134566999999986  4668888888876  44555555444 4444


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+.-..|.+.+++.++..+.+.+.+
T Consensus       164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~  193 (484)
T PRK14956        164 IPETILSRCQDFIFKKVPLSVLQDYSEKLC  193 (484)
T ss_pred             ccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence            544444345679999999998888777653

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.51  E-value=1.9e-06  Score=85.37  Aligned_cols=154  Identities=14%  Similarity=0.176  Sum_probs=91.5

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe--CCCCChHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV--SQDFDMRSVFADI  399 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~--~~~~~~~~~~~~i  399 (501)
                      ..+++|+++.++.+..++..+  ..+.+.++|++|+|||++|+.+++  ..........+  +.+  +..... ....+.
T Consensus        16 ~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~--~l~~~~~~~~~--i~~~~~~~~~~-~~~~~~   88 (319)
T PRK00440         16 LDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALAR--ELYGEDWRENF--LELNASDERGI-DVIRNK   88 (319)
T ss_pred             HHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHcCCccccce--EEeccccccch-HHHHHH
Confidence            467999999999999998543  334579999999999999999987  33221111122  222  221111 111111


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCC
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSP  476 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~  476 (501)
                      +..+....+               .....+-++++|+++..  .....|...+..  ....+.+|+++... .+.....+
T Consensus        89 i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~--~~~~~~lIl~~~~~~~l~~~l~s  151 (319)
T PRK00440         89 IKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM--YSQNTRFILSCNYSSKIIDPIQS  151 (319)
T ss_pred             HHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc--CCCCCeEEEEeCCccccchhHHH
Confidence            111111000               00123568999999863  345567776666  45567777776432 22222212


Q ss_pred             CCcceeCCCCChHHHHHHHHHhh
Q 010799          477 SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       477 ~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+++++++.++....+.+.+
T Consensus       152 r~~~~~~~~l~~~ei~~~l~~~~  174 (319)
T PRK00440        152 RCAVFRFSPLKKEAVAERLRYIA  174 (319)
T ss_pred             HhheeeeCCCCHHHHHHHHHHHH
Confidence            44578999999999988887654

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.49  E-value=1.5e-07  Score=92.66  Aligned_cols=99  Identities=12%  Similarity=0.051  Sum_probs=65.9

Q ss_pred             HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCC--CHHHHHHHHHHHhcCCCCcC--c
Q 010799          144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEEL--ERRELVTDILKQVGGSKVEK--Q  219 (501)
Q Consensus       144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~--~~~~l~~~i~~~~~~~~~~~--~  219 (501)
                      +++++|..-. .=.-..|+|.+|+||||||+.|||+.... +|++++||++++.+  +..++++.|.-.+-....+.  .
T Consensus       158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~  235 (416)
T PRK09376        158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE  235 (416)
T ss_pred             eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence            4555555322 22456899999999999999999876655 99999999999998  77888888763221111111  1


Q ss_pred             ch------HHHHHHHH-ccCCeEEEEEecCCC
Q 010799          220 LD------PQKKLRKL-FTENRYLVVIINART  244 (501)
Q Consensus       220 ~~------~~~~l~~~-l~~kr~LlVlDdv~~  244 (501)
                      .+      ..+..... -.+++.+|++|++..
T Consensus       236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR  267 (416)
T PRK09376        236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR  267 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence            11      11111111 368999999999854

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.49  E-value=1.7e-06  Score=90.37  Aligned_cols=166  Identities=11%  Similarity=0.149  Sum_probs=95.6

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.+..+..|...+..+ .-.+.+.++|+.|+||||+|+.+++............+         .....+..+.
T Consensus        14 ~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC---------g~C~sC~~i~   83 (546)
T PRK14957         14 SFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC---------NKCENCVAIN   83 (546)
T ss_pred             cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC---------cccHHHHHHh
Confidence            3577999999999999988543 33456889999999999999998873211111000000         0000000000


Q ss_pred             HH-------hccCCCCCCCCHHHHHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799          401 RQ-------LTQDEVDEESSLDDLESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY  469 (501)
Q Consensus       401 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~  469 (501)
                      ..       +............++.+.+... ..+++-++|+|+++.  ...++.|+..+..  ....+.+|++|.+ ..
T Consensus        84 ~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe--pp~~v~fIL~Ttd~~k  161 (546)
T PRK14957         84 NNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE--PPEYVKFILATTDYHK  161 (546)
T ss_pred             cCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc--CCCCceEEEEECChhh
Confidence            00       0000000001112222222221 234567999999985  4567888888888  5566766655543 33


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +...+.+...++++.+++.++..+.+.+.
T Consensus       162 il~tI~SRc~~~~f~~Ls~~eI~~~L~~i  190 (546)
T PRK14957        162 IPVTILSRCIQLHLKHISQADIKDQLKII  190 (546)
T ss_pred             hhhhHHHheeeEEeCCCCHHHHHHHHHHH
Confidence            44333335679999999999988777764

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.49  E-value=2.5e-06  Score=82.46  Aligned_cols=163  Identities=18%  Similarity=0.266  Sum_probs=107.9

Q ss_pred             cceeecchhHHHHHHHhhcCCCCc-eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKN-FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~-~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      +.|.+|+.++..|..++.+.+... ..+.|+|-+|+|||.+.+.++++.  ..   ..+|  +++...++...++..|+.
T Consensus         6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw--~n~~ecft~~~lle~IL~   78 (438)
T KOG2543|consen    6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVW--LNCVECFTYAILLEKILN   78 (438)
T ss_pred             cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---ccee--eehHHhccHHHHHHHHHH
Confidence            568899999999999997665544 456999999999999999999843  22   3489  999999999999999999


Q ss_pred             Hhc-cCCCCC---C--CCHHHHHHHHHHhc--C--CceEEEEEcCCCChhhHHH--------HHHhcCCCCCCCCCEEEE
Q 010799          402 QLT-QDEVDE---E--SSLDDLESEFTGIL--Y--EKRYLVVLDDVHSPGAWYD--------LKRIFSPQASPIGSRVIL  463 (501)
Q Consensus       402 ~l~-~~~~~~---~--~~~~~~~~~l~~~l--~--~~r~LlVlDnv~~~~~~~~--------l~~~l~~~~~~~~~~iIi  463 (501)
                      +.. .+.+..   .  .+.......+.++-  .  ++.++|||||++...+.+.        +...++.     ...+|+
T Consensus        79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~-----~~i~ii  153 (438)
T KOG2543|consen   79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE-----PTIVII  153 (438)
T ss_pred             HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC-----CceEEE
Confidence            996 332221   1  12223334444422  2  3479999999987544332        2222222     233444


Q ss_pred             EeCC---hHHHhhcCC-CCcceeCCCCChHHHHHHHHH
Q 010799          464 ITRE---AYVARSFSP-SIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       464 TtR~---~~~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                      ++-.   ......++. ...++..+..+.+|..++|.+
T Consensus       154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~  191 (438)
T KOG2543|consen  154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR  191 (438)
T ss_pred             EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence            4332   222222232 456788899999999988764

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=98.48  E-value=5.6e-06  Score=87.36  Aligned_cols=127  Identities=17%  Similarity=0.113  Sum_probs=71.9

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC--
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE--  407 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~--  407 (501)
                      .-+..|.+.|..+=..-.++.|.|.+|+|||+++..++.  .....-..++|  ++...  +...+.... ..++.+.  
T Consensus       257 tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~--~~~~~g~~~~y--is~e~--~~~~i~~~~-~~~g~~~~~  329 (509)
T PRK09302        257 SGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAE--AACRRGERCLL--FAFEE--SRAQLIRNA-RSWGIDLEK  329 (509)
T ss_pred             CCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHH--HHHhCCCcEEE--EEecC--CHHHHHHHH-HHcCCChHH
Confidence            445566666644434557999999999999999999887  33233345666  66543  333433332 2332210  


Q ss_pred             ------------CCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh------hh----HHHHHHhcCCCCCCCCCEEEEE
Q 010799          408 ------------VDEESSLDDLESEFTGILYE-KRYLVVLDDVHSP------GA----WYDLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       408 ------------~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~------~~----~~~l~~~l~~~~~~~~~~iIiT  464 (501)
                                  .....+.++....+.+.+.. +.-++|+|.+...      ..    +..+...+.    ..|..+|+|
T Consensus       330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k----~~~~t~l~t  405 (509)
T PRK09302        330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLK----SEEITGLFT  405 (509)
T ss_pred             HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHH----hCCCeEEEE
Confidence                        00122345666666666644 4458999997541      11    122333333    357788888


Q ss_pred             eCC
Q 010799          465 TRE  467 (501)
Q Consensus       465 tR~  467 (501)
                      .-.
T Consensus       406 ~~~  408 (509)
T PRK09302        406 NLT  408 (509)
T ss_pred             ecc
Confidence            653

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.48  E-value=2.4e-06  Score=84.31  Aligned_cols=154  Identities=13%  Similarity=0.227  Sum_probs=98.1

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccc----cccCCccceeEEEEeC-CCCChHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSY----TKKNFPCRAWANVYVS-QDFDMRSVF  396 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~----~~~~f~~~~w~~v~~~-~~~~~~~~~  396 (501)
                      ..+++|.+...+.|...+..+ .-++...++|+.|+|||++|..++...-    ...|.+...|  .... ....... .
T Consensus         3 ~~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~--~~~~~~~i~v~~-i   78 (313)
T PRK05564          3 FHTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEF--KPINKKSIGVDD-I   78 (313)
T ss_pred             hhhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEe--ccccCCCCCHHH-H
Confidence            356899999999999988543 3446889999999999999999887321    1223333333  2111 1111111 2


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhh
Q 010799          397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARS  473 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~  473 (501)
                      +++...+....                 ..+++-++|+|+++.  ...++.|+..+..  .+.++.+|++|.+.. +...
T Consensus        79 r~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~T  139 (313)
T PRK05564         79 RNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEE--PPKGVFIILLCENLEQILDT  139 (313)
T ss_pred             HHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHH
Confidence            22222221110                 123455777777654  5678899999999  788899888887653 3233


Q ss_pred             cCCCCcceeCCCCChHHHHHHHHHh
Q 010799          474 FSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       474 ~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +.+...++.+.+++.++..+.+.+.
T Consensus       140 I~SRc~~~~~~~~~~~~~~~~l~~~  164 (313)
T PRK05564        140 IKSRCQIYKLNRLSKEEIEKFISYK  164 (313)
T ss_pred             HHhhceeeeCCCcCHHHHHHHHHHH
Confidence            3335679999999999998877654

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.47  E-value=2.8e-06  Score=85.74  Aligned_cols=164  Identities=15%  Similarity=0.136  Sum_probs=95.5

Q ss_pred             ccceeecchhHHHHHHHhhcCCC--------CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSD--------KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR  393 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~--------~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~  393 (501)
                      .++++|.+..++.|.+.+..+..        -++.+.++|++|+|||++|+.++........-    +  -    .+...
T Consensus         4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~--~----~Cg~C   73 (394)
T PRK07940          4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E--P----GCGEC   73 (394)
T ss_pred             hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C--C----CCCCC
Confidence            46789999999999999965431        34678999999999999999987632111100    0  0    00000


Q ss_pred             HHHHHHHHHhccC-----CCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEE
Q 010799          394 SVFADILRQLTQD-----EVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRV  461 (501)
Q Consensus       394 ~~~~~i~~~l~~~-----~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~i  461 (501)
                      .....+...-.++     ........+++. .+.+.+     .+++-++|+|+++.  ....+.|+..+..  ...++.+
T Consensus        74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe--p~~~~~f  150 (394)
T PRK07940         74 RACRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE--PPPRTVW  150 (394)
T ss_pred             HHHHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc--CCCCCeE
Confidence            0111111000000     000011222222 222222     23455888899986  4455778887777  5667766


Q ss_pred             EEEeCCh-HHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          462 ILITREA-YVARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       462 IiTtR~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      |++|.+. .+...+.+.-..+.+++++.++..+.+.+.
T Consensus       151 IL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~  188 (394)
T PRK07940        151 LLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR  188 (394)
T ss_pred             EEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence            6666653 444444445579999999999999888643

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.46  E-value=4.7e-07  Score=77.08  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=76.7

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccc---cccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc--CcchHHHHHHHH
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVK---EYFQCRAWVPVPEELERRELVTDILKQVGGSKVE--KQLDPQKKLRKL  229 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~---~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~--~~~~~~~~l~~~  229 (501)
                      +-+.+.|+|.+|+|||++++.+.+...-.   ..-...+|+..+...+...+.+.|+++++.....  +..++...+.+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA   82 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence            34678999999999999999998642110   0023446999988889999999999999977655  344556777777


Q ss_pred             ccCCe-EEEEEecCCC---hhHHHHHhhcCCCCCCCcEEEEEecc
Q 010799          230 FTENR-YLVVIINART---PDIWDILKYLFPNSSNGSRVILSFQE  270 (501)
Q Consensus       230 l~~kr-~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtr~  270 (501)
                      ++..+ .+||||++..   ...++.|.....  ..+.+||++-+.
T Consensus        83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence            76554 5999999854   344566655443  556777776654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.46  E-value=1.6e-06  Score=79.04  Aligned_cols=147  Identities=18%  Similarity=0.136  Sum_probs=81.7

Q ss_pred             ccceeecchhHHHHHHHhh---cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTL---NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~---~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .++|||.+..+..+.-++.   ..++....+.+|||+|+||||||.-+++  .....|.   +  ++...-..       
T Consensus        23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~--~sg~~i~k-------   88 (233)
T PF05496_consen   23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---I--TSGPAIEK-------   88 (233)
T ss_dssp             CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---E--EECCC--S-------
T ss_pred             HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---e--ccchhhhh-------
Confidence            4779999999998876653   2345567899999999999999999999  5555542   2  33221111       


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC------CCC-----------CC
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA------SPI-----------GS  459 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~------~~~-----------~~  459 (501)
                                     ..++...+.+.  +++.+|++|++..  ..+.+.|++...+..      .++           -+
T Consensus        89 ---------------~~dl~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT  151 (233)
T PF05496_consen   89 ---------------AGDLAAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT  151 (233)
T ss_dssp             ---------------CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred             ---------------HHHHHHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence                           11222222221  2345888899986  455566666544310      111           12


Q ss_pred             EEEEEeCChHHHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799          460 RVILITREAYVARSFSP-SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       460 ~iIiTtR~~~~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      -|=-|||...+...+.. .+.+.+++..+.+|-.++..+.+
T Consensus       152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a  192 (233)
T PF05496_consen  152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA  192 (233)
T ss_dssp             EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC
T ss_pred             EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHH
Confidence            24457887766655542 23355899999999998887654

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.46  E-value=3.9e-06  Score=89.00  Aligned_cols=165  Identities=21%  Similarity=0.250  Sum_probs=106.2

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC-CCChHHHHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ-DFDMRSVFADILR  401 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~-~~~~~~~~~~i~~  401 (501)
                      .+.|-|..-++.|..     ..+.|.+.|..|+|-|||||+.+++.  . ...-..+.|  +++.+ +.++...+..++.
T Consensus        19 ~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~W--lslde~dndp~rF~~yLi~   88 (894)
T COG2909          19 DNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAW--LSLDESDNDPARFLSYLIA   88 (894)
T ss_pred             ccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeE--eecCCccCCHHHHHHHHHH
Confidence            345666666655543     34679999999999999999999865  2 233456899  98854 4567788888888


Q ss_pred             HhccCCCC------------CCCCHHHHHHHHHHhcCC--ceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEE
Q 010799          402 QLTQDEVD------------EESSLDDLESEFTGILYE--KRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       402 ~l~~~~~~------------~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiT  464 (501)
                      .+....+.            +..+...+++.+..-+.+  .++.+||||..-   ..--..+...+..  .+++..+|+|
T Consensus        89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~--~P~~l~lvv~  166 (894)
T COG2909          89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH--APENLTLVVT  166 (894)
T ss_pred             HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh--CCCCeEEEEE
Confidence            87754332            223445556666655543  589999999864   2222223233334  5569999999


Q ss_pred             eCChHHHhhcCC--CCcceeCC----CCChHHHHHHHHHhh
Q 010799          465 TREAYVARSFSP--SIFLHQLR----PLNEEESGKLFQRRL  499 (501)
Q Consensus       465 tR~~~~~~~~~~--~~~~~~l~----~L~~~ea~~Lf~~~~  499 (501)
                      ||+..-...-..  ....++++    .|+.+|+.++|..+.
T Consensus       167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~  207 (894)
T COG2909         167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG  207 (894)
T ss_pred             eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence            998742221111  22334443    388899999988764

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.45  E-value=2.5e-06  Score=87.92  Aligned_cols=167  Identities=15%  Similarity=0.126  Sum_probs=97.7

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      .+.++||.+...+.|.+.+..+ .-++.+.++|+.|+||||+|+.+++..........         .++.....+..+.
T Consensus        11 ~f~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~---------~pCg~C~~C~~i~   80 (491)
T PRK14964         11 SFKDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS---------DPCGTCHNCISIK   80 (491)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC---------CCccccHHHHHHh
Confidence            4578999999999998888543 23458999999999999999998763211110000         0001111111111


Q ss_pred             HHhccCC---C-CCCCCHHHHHHHHHH---h-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC-ChH
Q 010799          401 RQLTQDE---V-DEESSLDDLESEFTG---I-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR-EAY  469 (501)
Q Consensus       401 ~~l~~~~---~-~~~~~~~~~~~~l~~---~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR-~~~  469 (501)
                      .....+-   + ....+.+++...+..   . ..++.-++|+|+++.  ...++.|+..+..  ..+.+.+|++|. ...
T Consensus        81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe--Pp~~v~fIlatte~~K  158 (491)
T PRK14964         81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE--PAPHVKFILATTEVKK  158 (491)
T ss_pred             ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC--CCCCeEEEEEeCChHH
Confidence            1100000   0 001122222211111   1 124566899999976  4557888888888  666777666554 445


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+....+++.+++.++..+.+.+.+
T Consensus       159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia  188 (491)
T PRK14964        159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIA  188 (491)
T ss_pred             HHHHHHHhheeeecccccHHHHHHHHHHHH
Confidence            555544466789999999999888877654

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.45  E-value=3.4e-06  Score=81.44  Aligned_cols=96  Identities=14%  Similarity=0.117  Sum_probs=62.9

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCc-chHHHHHHHH----
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQ-LDPQKKLRKL----  229 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~l~~~----  229 (501)
                      +..++.|+|.+|+|||||++.+++..... .+ ..+|+. ....+..+++..++..++.+..... ......+...    
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~  118 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ  118 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence            35678999999999999999999754322 11 223433 3346788999999999876543221 1222333322    


Q ss_pred             -ccCCeEEEEEecCCCh--hHHHHHhh
Q 010799          230 -FTENRYLVVIINARTP--DIWDILKY  253 (501)
Q Consensus       230 -l~~kr~LlVlDdv~~~--~~~~~l~~  253 (501)
                       ..+++++||+||++..  ..++.+..
T Consensus       119 ~~~~~~~vliiDe~~~l~~~~~~~l~~  145 (269)
T TIGR03015       119 FAAGKRALLVVDEAQNLTPELLEELRM  145 (269)
T ss_pred             HhCCCCeEEEEECcccCCHHHHHHHHH
Confidence             3678899999999873  34565543

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK04195 replication factor C large subunit; Provisional

Probab=98.44  E-value=1.9e-06  Score=90.17  Aligned_cols=151  Identities=15%  Similarity=0.207  Sum_probs=91.8

Q ss_pred             ccceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ..+++|.++.++.|..++..-  +...+.+.|+|++|+|||++|..++++  ..  |.. +-  ++++...+ .+.+..+
T Consensus        13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~~-ie--lnasd~r~-~~~i~~~   84 (482)
T PRK04195         13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WEV-IE--LNASDQRT-ADVIERV   84 (482)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CCE-EE--Eccccccc-HHHHHHH
Confidence            467999999999999998532  222678999999999999999999983  32  221 11  34333222 2223333


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHh
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREA-YVAR  472 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~  472 (501)
                      +........               ....++-+||||+++..      ..+..+...+..    .+..+|+|+.+. ....
T Consensus        85 i~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~----~~~~iIli~n~~~~~~~  145 (482)
T PRK04195         85 AGEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK----AKQPIILTANDPYDPSL  145 (482)
T ss_pred             HHHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc----CCCCEEEeccCccccch
Confidence            322221111               11135679999999873      235666665554    234455555432 1211


Q ss_pred             -hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          473 -SFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       473 -~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                       .+.+....+.+++++.++....+.+.+
T Consensus       146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~  173 (482)
T PRK04195        146 RELRNACLMIEFKRLSTRSIVPVLKRIC  173 (482)
T ss_pred             hhHhccceEEEecCCCHHHHHHHHHHHH
Confidence             222245689999999999888877654

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.43  E-value=2.1e-06  Score=87.44  Aligned_cols=173  Identities=12%  Similarity=0.128  Sum_probs=99.0

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEE-eCCCCChHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVY-VSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~-~~~~~~~~~~~~~i  399 (501)
                      ...+++|.+...+.|..++.++ .-++.+.++|++|+||||+|+.+++.......+...-|  .. ...++........+
T Consensus        14 ~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~--~~~~~~~c~~c~~c~~~   90 (397)
T PRK14955         14 KFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADY--LQEVTEPCGECESCRDF   90 (397)
T ss_pred             cHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccc--cccCCCCCCCCHHHHHH
Confidence            3577999999999999988543 23356889999999999999998874322111111111  00 01111111222222


Q ss_pred             HHHhccCC---CC-CCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CC
Q 010799          400 LRQLTQDE---VD-EESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-RE  467 (501)
Q Consensus       400 ~~~l~~~~---~~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~  467 (501)
                      ...-....   .. .....+++.+ +.+.+     .+.+-++|+|+++.  ...++.++..+..  ..+.+.+|++| +.
T Consensus        91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe--p~~~t~~Il~t~~~  167 (397)
T PRK14955         91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE--PPPHAIFIFATTEL  167 (397)
T ss_pred             hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc--CCCCeEEEEEeCCh
Confidence            21111100   00 1112333333 22323     24566889999986  3467888888887  56677766655 43


Q ss_pred             hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          468 AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       468 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..+...+.+...++++.+++.++..+.+.+.+
T Consensus       168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~  199 (397)
T PRK14955        168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGIC  199 (397)
T ss_pred             HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            44443333245689999999999888777643

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.41  E-value=2.7e-06  Score=80.23  Aligned_cols=144  Identities=13%  Similarity=0.169  Sum_probs=81.5

Q ss_pred             ccee-ecch-hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          323 TAVV-SMEN-DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       323 ~~fv-GR~~-~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ++|+ |-.. .+..+.++...  ...+.+.|+|++|+|||+|+..+++  .....-..+.+  +++.....         
T Consensus        22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y--~~~~~~~~---------   86 (235)
T PRK08084         22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGY--VPLDKRAW---------   86 (235)
T ss_pred             cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEE--EEHHHHhh---------
Confidence            4565 5222 33334444322  2346899999999999999999888  44333333445  55422100         


Q ss_pred             HHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHH-HHHHhcCCCCCCCCCEEEEEeCCh--------
Q 010799          401 RQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWY-DLKRIFSPQASPIGSRVILITREA--------  468 (501)
Q Consensus       401 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~-~l~~~l~~~~~~~~~~iIiTtR~~--------  468 (501)
                                  ...+..+.+.+     --+|+|||++..   ..|+ .+...+.......+.++|+||+..        
T Consensus        87 ------------~~~~~~~~~~~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~  149 (235)
T PRK08084         87 ------------FVPEVLEGMEQ-----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL  149 (235)
T ss_pred             ------------hhHHHHHHhhh-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence                        01111222211     137899999762   2332 233333221012234799998754        


Q ss_pred             -HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          469 -YVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       469 -~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                       .+...+. .+.+++++++++++-.+++.+++
T Consensus       150 ~~L~SRl~-~g~~~~l~~~~~~~~~~~l~~~a  180 (235)
T PRK08084        150 PDLASRLD-WGQIYKLQPLSDEEKLQALQLRA  180 (235)
T ss_pred             HHHHHHHh-CCceeeecCCCHHHHHHHHHHHH
Confidence             2333333 66899999999999999988754

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.41  E-value=3.6e-06  Score=89.15  Aligned_cols=170  Identities=15%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC--ccceeEEEEeCCCCChHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF--PCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f--~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .++++||-+..+..|.+++..+ .-.+.+.++|+.|+||||+|+.+++........  .+...      ..+.....+..
T Consensus        14 ~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~------~pCg~C~~C~~   86 (618)
T PRK14951         14 SFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA------TPCGVCQACRD   86 (618)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC------CCCCccHHHHH
Confidence            4578999999999999988643 334678999999999999999987632111100  11000      11111122222


Q ss_pred             HHHHhccCC----CCCCCCHHHHHHHHHHhc----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-
Q 010799          399 ILRQLTQDE----VDEESSLDDLESEFTGIL----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-  467 (501)
Q Consensus       399 i~~~l~~~~----~~~~~~~~~~~~~l~~~l----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-  467 (501)
                      +...-..+.    .......+++.+.+....    .++.-++|||+++.  ...++.|+..+..  ....+.+|++|.+ 
T Consensus        87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE--PP~~~~fIL~Ttd~  164 (618)
T PRK14951         87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE--PPEYLKFVLATTDP  164 (618)
T ss_pred             HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc--CCCCeEEEEEECCc
Confidence            211000000    001122333332222211    13445889999986  4567888888877  5566666666543 


Q ss_pred             hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          468 AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       468 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..+...+.+....+++.+++.++..+.+.+.+
T Consensus       165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~  196 (618)
T PRK14951        165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVL  196 (618)
T ss_pred             hhhhHHHHHhceeeecCCCCHHHHHHHHHHHH
Confidence            34433333356799999999999888887654

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.39  E-value=3.2e-06  Score=83.66  Aligned_cols=147  Identities=11%  Similarity=0.158  Sum_probs=88.1

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+++|.+...+.+..++.. +.-+..+.++|++|+|||++|..+++  .....|   ..  +++.. .. .+...+.+.
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~-~~~~~~lll~G~~G~GKT~la~~l~~--~~~~~~---~~--i~~~~-~~-~~~i~~~l~   89 (316)
T PHA02544         20 IDECILPAADKETFKSIVKK-GRIPNMLLHSPSPGTGKTTVAKALCN--EVGAEV---LF--VNGSD-CR-IDFVRNRLT   89 (316)
T ss_pred             HHHhcCcHHHHHHHHHHHhc-CCCCeEEEeeCcCCCCHHHHHHHHHH--HhCccc---eE--eccCc-cc-HHHHHHHHH
Confidence            47799999999999999864 33446777899999999999999988  332222   23  44433 11 111111111


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPS  477 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~  477 (501)
                      .+....               . +...+-++|||+++..   .....+...+..  ...++++|+||.... +...+.+.
T Consensus        90 ~~~~~~---------------~-~~~~~~vliiDe~d~l~~~~~~~~L~~~le~--~~~~~~~Ilt~n~~~~l~~~l~sR  151 (316)
T PHA02544         90 RFASTV---------------S-LTGGGKVIIIDEFDRLGLADAQRHLRSFMEA--YSKNCSFIITANNKNGIIEPLRSR  151 (316)
T ss_pred             HHHHhh---------------c-ccCCCeEEEEECcccccCHHHHHHHHHHHHh--cCCCceEEEEcCChhhchHHHHhh
Confidence            111000               0 1134568889999754   233445555555  456788888886532 22222224


Q ss_pred             CcceeCCCCChHHHHHHHH
Q 010799          478 IFLHQLRPLNEEESGKLFQ  496 (501)
Q Consensus       478 ~~~~~l~~L~~~ea~~Lf~  496 (501)
                      ...+.++.++.++..+++.
T Consensus       152 ~~~i~~~~p~~~~~~~il~  170 (316)
T PHA02544        152 CRVIDFGVPTKEEQIEMMK  170 (316)
T ss_pred             ceEEEeCCCCHHHHHHHHH
Confidence            4577888888888776654

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.39  E-value=1.5e-06  Score=87.87  Aligned_cols=114  Identities=11%  Similarity=0.039  Sum_probs=77.7

Q ss_pred             ccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccc-ccc---ceeEEEEcCCCCCHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVK-EYF---QCRAWVPVPEELERRELVT  205 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~-~~F---~~~~wv~vs~~~~~~~l~~  205 (501)
                      +..++||+++.++|...|...  +.....+.|+|++|+|||++++.+++.-.-. ...   -..+|+......+...++.
T Consensus        14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~   93 (365)
T TIGR02928        14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV   93 (365)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence            457999999999999998742  2344568999999999999999999642110 111   1335666666667788999


Q ss_pred             HHHHHhc---CCCCc---CcchHHHHHHHHcc--CCeEEEEEecCCCh
Q 010799          206 DILKQVG---GSKVE---KQLDPQKKLRKLFT--ENRYLVVIINARTP  245 (501)
Q Consensus       206 ~i~~~~~---~~~~~---~~~~~~~~l~~~l~--~kr~LlVlDdv~~~  245 (501)
                      .|++++.   .....   +..+....+.+.+.  ++.++||||++..-
T Consensus        94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L  141 (365)
T TIGR02928        94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL  141 (365)
T ss_pred             HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence            9999984   21111   11233455555553  56789999998654

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.38  E-value=9.3e-06  Score=73.88  Aligned_cols=70  Identities=21%  Similarity=0.289  Sum_probs=50.8

Q ss_pred             CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          427 EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       427 ~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +.+-++|+||++.  ...++.|+..+..  .+..+.+|++|++. .+...+.+...++.+.+++.++..+.+.+.
T Consensus        95 ~~~kviiide~~~l~~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~  167 (188)
T TIGR00678        95 SGRRVVIIEDAERMNEAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ  167 (188)
T ss_pred             CCeEEEEEechhhhCHHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence            4567899999986  3457788888877  56677777777653 333333335679999999999998887653

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PTZ00202 tuzin; Provisional

Probab=98.38  E-value=1.9e-05  Score=78.57  Aligned_cols=105  Identities=13%  Similarity=0.048  Sum_probs=73.5

Q ss_pred             ccccccccccchhhHHHHHHHHhcCC-CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHH
Q 010799          128 DSAKKTGILDLNKEVNKLADFLIRSH-SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTD  206 (501)
Q Consensus       128 ~~~~~~~~vg~~~~~~~l~~~L~~~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~  206 (501)
                      .+....+|+||+.+..+|...|...+ ...+++.|.|++|+|||||++.+.....      ..+++.-+.  +..+++..
T Consensus       257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~  328 (550)
T PTZ00202        257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRS  328 (550)
T ss_pred             CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHH
Confidence            34456799999999999999997533 2346889999999999999999884322      123333333  77999999


Q ss_pred             HHHHhcCCCCcCcchHHHHHHHHc-----c-CCeEEEEEe
Q 010799          207 ILKQVGGSKVEKQLDPQKKLRKLF-----T-ENRYLVVII  240 (501)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlD  240 (501)
                      ++.+|+.+......++...|.+.|     . +++.+||+-
T Consensus       329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~  368 (550)
T PTZ00202        329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK  368 (550)
T ss_pred             HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999999754433334444444333     3 677777763

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.38  E-value=3.6e-06  Score=72.53  Aligned_cols=123  Identities=9%  Similarity=-0.105  Sum_probs=69.8

Q ss_pred             ccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCC
Q 010799          136 LDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSK  215 (501)
Q Consensus       136 vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~  215 (501)
                      .|++.....+...+...  ..+.+.|+|.+|+|||||++.+++.-.  ..-...+++..++..........+...     
T Consensus         1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-----   71 (151)
T cd00009           1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF-----   71 (151)
T ss_pred             CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence            36777888888887653  345788999999999999999996432  111234455444433222211111000     


Q ss_pred             CcCcchHHHHHHHHccCCeEEEEEecCCCh-----hHHHHHhhcCCCC---CCCcEEEEEecccc
Q 010799          216 VEKQLDPQKKLRKLFTENRYLVVIINARTP-----DIWDILKYLFPNS---SNGSRVILSFQEAD  272 (501)
Q Consensus       216 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~iivTtr~~~  272 (501)
                           ............+..+|++||++..     ..+..+...+...   ..+..||+||....
T Consensus        72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence                 0011122233456789999999853     2222222222221   35788888887655

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.38  E-value=8.8e-06  Score=80.98  Aligned_cols=170  Identities=16%  Similarity=0.207  Sum_probs=102.2

Q ss_pred             cccccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC--CccceeEEEEeCCCCChHHHH
Q 010799          319 SEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN--FPCRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       319 ~~~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~--f~~~~w~~v~~~~~~~~~~~~  396 (501)
                      +.+..+++|.++....|...+..+ .-+..+.|+|+.|+||||+|..+++..-....  +.....     ...+.-...+
T Consensus        19 P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~-----~~~~~~c~~c   92 (351)
T PRK09112         19 PSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL-----ADPDPASPVW   92 (351)
T ss_pred             CCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc-----CCCCCCCHHH
Confidence            456788999999999999998543 34467999999999999999998874211110  111000     1111111222


Q ss_pred             HHHHHH-------hccCCCC------CCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCC
Q 010799          397 ADILRQ-------LTQDEVD------EESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASP  456 (501)
Q Consensus       397 ~~i~~~-------l~~~~~~------~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~  456 (501)
                      ..+...       +..+...      .....+++ ..+.+++.     +++-++|+|+++.  ....+.|+..+..  ..
T Consensus        93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE--pp  169 (351)
T PRK09112         93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE--PP  169 (351)
T ss_pred             HHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc--CC
Confidence            333222       1111000      11223333 34455543     3456899999986  4556778888777  45


Q ss_pred             CCCEEEEEeCCh-HHHhhcCCCCcceeCCCCChHHHHHHHHH
Q 010799          457 IGSRVILITREA-YVARSFSPSIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       457 ~~~~iIiTtR~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                      .++.+|++|... .+...+.+.-..+++.+++.++..+++.+
T Consensus       170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~  211 (351)
T PRK09112        170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSH  211 (351)
T ss_pred             CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHH
Confidence            556655555443 33333443456999999999999998876

>PF13173 AAA_14: AAA domain

Probab=98.38  E-value=7.7e-07  Score=75.54  Aligned_cols=102  Identities=13%  Similarity=0.045  Sum_probs=68.2

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY  235 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~  235 (501)
                      .+++.|.|+.|+|||||+++++.+..   .....+++...+.........               +..+.+.+...++..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~   63 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP---------------DLLEYFLELIKPGKK   63 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh---------------hhHHHHHHhhccCCc
Confidence            46899999999999999999985332   224445554443322110000               022333344444778


Q ss_pred             EEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          236 LVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       236 LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      +|+||++.....|......+-+..+..+|++|+.+.....
T Consensus        64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~  103 (128)
T PF13173_consen   64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLS  103 (128)
T ss_pred             EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence            8999999988889877777776666789999998877764

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.38  E-value=3.7e-06  Score=89.24  Aligned_cols=167  Identities=14%  Similarity=0.188  Sum_probs=99.4

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      .+.++||.+..+..|...+..+ .-.+.+.++|+.|+||||+|+.+++.......+.         ...+.....+..+.
T Consensus        14 ~f~divGQe~vv~~L~~~l~~~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~C~~C~~i~   83 (647)
T PRK07994         14 TFAEVVGQEHVLTALANALDLG-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT---------ATPCGECDNCREIE   83 (647)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC---------CCCCCCCHHHHHHH
Confidence            4578999999999999988643 2335678999999999999999987432111110         00111112222222


Q ss_pred             HHhccCC---C-CCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799          401 RQLTQDE---V-DEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY  469 (501)
Q Consensus       401 ~~l~~~~---~-~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~  469 (501)
                      ..-..+.   . ......+++...+.+.    ..++.-++|||+++.  ...++.|+..+-.  ....+++|++|.+ ..
T Consensus        84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE--Pp~~v~FIL~Tt~~~k  161 (647)
T PRK07994         84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQK  161 (647)
T ss_pred             cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc--CCCCeEEEEecCCccc
Confidence            1000000   0 0011223332222221    134566999999986  4567888888888  5666666665554 44


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+.-..+.+.+|+.++..+.+.+.+
T Consensus       162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il  191 (647)
T PRK07994        162 LPVTILSRCLQFHLKALDVEQIRQQLEHIL  191 (647)
T ss_pred             cchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence            443433355799999999999998887643

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.37  E-value=5.8e-06  Score=83.88  Aligned_cols=156  Identities=12%  Similarity=0.129  Sum_probs=89.5

Q ss_pred             ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      .+++.|+++.++++.+.+..           +-..++.+.++|++|+|||++|+.+++  .....     |  +.+..  
T Consensus       130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~--i~v~~--  198 (389)
T PRK03992        130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----F--IRVVG--  198 (389)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----E--EEeeh--
Confidence            35799999999999887632           113456799999999999999999988  43332     3  33321  


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------hh-HHHHHHhc---CCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------------GA-WYDLKRIF---SPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~~-~~~l~~~l---~~~~  454 (501)
                        ..    +.....+.      ....+...+...-...+.+|+||+++..            .. ...+...+   ....
T Consensus       199 --~~----l~~~~~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~  266 (389)
T PRK03992        199 --SE----LVQKFIGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD  266 (389)
T ss_pred             --HH----HhHhhccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence              11    11111110      1111222222222345789999999863            11 11222222   2210


Q ss_pred             CCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhhc
Q 010799          455 SPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      ...+..||.||.... +...+-   .....+.+++++.++..++|..++.
T Consensus       267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~  316 (389)
T PRK03992        267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR  316 (389)
T ss_pred             CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence            123556777776533 222211   1346799999999999999987653

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.37  E-value=2.8e-06  Score=89.98  Aligned_cols=166  Identities=16%  Similarity=0.196  Sum_probs=94.4

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      .+.+++|.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.........   +  ..|..    ...+..+.
T Consensus        14 tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~--~pCg~----C~sCr~i~   83 (709)
T PRK08691         14 TFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G--EPCGV----CQSCTQID   83 (709)
T ss_pred             CHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C--CCCcc----cHHHHHHh
Confidence            4578999999999999998643 2346789999999999999999887321111110   0  00000    00001110


Q ss_pred             HH-----hccCCCCCCCCHHHHHHHHHH---h-cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 010799          401 RQ-----LTQDEVDEESSLDDLESEFTG---I-LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA-  468 (501)
Q Consensus       401 ~~-----l~~~~~~~~~~~~~~~~~l~~---~-l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~-  468 (501)
                      ..     +..... .....+.+...+..   . ..+++-++|||+++..  ...+.|+..+..  ....+++|++|.+. 
T Consensus        84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE--Pp~~v~fILaTtd~~  160 (709)
T PRK08691         84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE--PPEHVKFILATTDPH  160 (709)
T ss_pred             ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh--CCCCcEEEEEeCCcc
Confidence            00     000000 11122222222221   1 1245668999999863  346677887766  45567777776543 


Q ss_pred             HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          469 YVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+...+.+....+.+.+++.++..+.+.+.+
T Consensus       161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il  191 (709)
T PRK08691        161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVL  191 (709)
T ss_pred             ccchHHHHHHhhhhcCCCCHHHHHHHHHHHH
Confidence            2222222234578888999999888877554

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.37  E-value=3.8e-06  Score=92.27  Aligned_cols=152  Identities=18%  Similarity=0.208  Sum_probs=88.1

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-----CC-ccceeEEEEeCCCCChHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-----NF-PCRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-----~f-~~~~w~~v~~~~~~~~~~~~  396 (501)
                      +.++||++++.++...|...  ...-+.++|++|+|||++|..+++  +...     .+ ...+|   .+    ++..+.
T Consensus       182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~---~~----~~~~l~  250 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIY---SL----DMGSLL  250 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEE---Ee----cHHHHh
Confidence            56999999999999988553  234678999999999999999988  3322     12 23344   11    111111


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh-----------hhHHHHHHhcCCCCCCCCCEEEEE
Q 010799          397 ADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP-----------GAWYDLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~-----------~~~~~l~~~l~~~~~~~~~~iIiT  464 (501)
                      .       ....  ....++.++.+.+.+ ...+.+|++|+++..           +..+.|.+.+..    ...++|-+
T Consensus       251 a-------~~~~--~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~----g~i~~Iga  317 (731)
T TIGR02639       251 A-------GTKY--RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS----GKLRCIGS  317 (731)
T ss_pred             h-------hccc--cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC----CCeEEEEe
Confidence            0       0000  012222333333332 345789999998742           123344444433    12445555


Q ss_pred             eCChHH------HhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          465 TREAYV------ARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       465 tR~~~~------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      |....+      ...+.+....+++++++.++..+++.+.
T Consensus       318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~  357 (731)
T TIGR02639       318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGL  357 (731)
T ss_pred             cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence            554322      1122224568999999999999999854

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.36  E-value=1.8e-05  Score=82.79  Aligned_cols=128  Identities=16%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC-
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV-  408 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~-  408 (501)
                      .-+..|.+.|..+=..-.++.|.|++|+|||+|+.+++.  ....+-..+++  ++.  ..+...+.... ..++.+.. 
T Consensus       247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y--~s~--eEs~~~i~~~~-~~lg~~~~~  319 (484)
T TIGR02655       247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLE--NACANKERAIL--FAY--EESRAQLLRNA-YSWGIDFEE  319 (484)
T ss_pred             CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEE--EEe--eCCHHHHHHHH-HHcCCChHH
Confidence            445666777755545668999999999999999999887  33222233444  443  34444444443 23322110 


Q ss_pred             -------------CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh------hhHH----HHHHhcCCCCCCCCCEEEEE
Q 010799          409 -------------DEESSLDDLESEFTGILYE-KRYLVVLDDVHSP------GAWY----DLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       409 -------------~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~------~~~~----~l~~~l~~~~~~~~~~iIiT  464 (501)
                                   ......++....+.+.+.+ +.-++|+|.+...      .+..    .|...+.    ..+..+++|
T Consensus       320 ~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk----~~~it~~~t  395 (484)
T TIGR02655       320 MEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK----QEEITGFFT  395 (484)
T ss_pred             HhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHh----hCCCeEEEe
Confidence                         0123446677777777754 4568999998742      1111    1222222    457778888


Q ss_pred             eCCh
Q 010799          465 TREA  468 (501)
Q Consensus       465 tR~~  468 (501)
                      .-..
T Consensus       396 ~~~~  399 (484)
T TIGR02655       396 NTSD  399 (484)
T ss_pred             eccc
Confidence            5443

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.36  E-value=2.1e-06  Score=89.89  Aligned_cols=167  Identities=17%  Similarity=0.188  Sum_probs=96.3

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|++..++.|.+.+..+ .-++.+.++|+.|+|||++|+.+++...      |..|  ... ..+.-...+..+.
T Consensus        14 ~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~--~~~-~~Cg~C~sCr~i~   83 (605)
T PRK05896         14 NFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNP--KDG-DCCNSCSVCESIN   83 (605)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc------CCCC--CCC-CCCcccHHHHHHH
Confidence            3577999999999999988543 3346789999999999999999987421      1112  110 1111112222221


Q ss_pred             HHhccCC----CCCCCCHHHH---HHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC-ChH
Q 010799          401 RQLTQDE----VDEESSLDDL---ESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR-EAY  469 (501)
Q Consensus       401 ~~l~~~~----~~~~~~~~~~---~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR-~~~  469 (501)
                      .......    .......+++   ...+... ...++-++|+|+++.  ...++.|+..+..  .+..+.+|++|. ...
T Consensus        84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~K  161 (605)
T PRK05896         84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE--PPKHVVFIFATTEFQK  161 (605)
T ss_pred             cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh--CCCcEEEEEECCChHh
Confidence            1111000    0001122222   2222111 112344799999976  4567788888877  455666655553 334


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+....+++.+++.++....+.+.+
T Consensus       162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il  191 (605)
T PRK05896        162 IPLTIISRCQRYNFKKLNNSELQELLKSIA  191 (605)
T ss_pred             hhHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence            443333356689999999999888777643

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.35  E-value=1e-05  Score=81.46  Aligned_cols=163  Identities=15%  Similarity=0.207  Sum_probs=93.6

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccc--cCCc-cceeEEEEeCCCCChHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTK--KNFP-CRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~--~~f~-~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      ..+++|.+..++.|.+.+..+ .-.+.+.++|++|+|||++|+.+.......  ..+. +-.+            .....
T Consensus        13 ~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c------------~~c~~   79 (355)
T TIGR02397        13 FEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC------------ESCKE   79 (355)
T ss_pred             HhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC------------HHHHH
Confidence            467899999999999988543 334678999999999999999887632111  1110 0000            00000


Q ss_pred             HHHHhccC----CCCCCCCH---HHHHHHHHHh-cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          399 ILRQLTQD----EVDEESSL---DDLESEFTGI-LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       399 i~~~l~~~----~~~~~~~~---~~~~~~l~~~-l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                      +.......    ........   .++...+... ..+.+-++|+|+++..  ..++.++..+..  ....+.+|++|.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~--~~~~~~lIl~~~~~  157 (355)
T TIGR02397        80 INSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE--PPEHVVFILATTEP  157 (355)
T ss_pred             HhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC--CccceeEEEEeCCH
Confidence            00000000    00000111   1122222111 1234568899998764  557788888866  55667777776554


Q ss_pred             H-HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          469 Y-VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       469 ~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      . +...+.+....+++++++.++..+.+...+
T Consensus       158 ~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~  189 (355)
T TIGR02397       158 HKIPATILSRCQRFDFKRIPLEDIVERLKKIL  189 (355)
T ss_pred             HHHHHHHHhheeEEEcCCCCHHHHHHHHHHHH
Confidence            3 333333345688999999999888887644

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.35  E-value=4.1e-05  Score=79.92  Aligned_cols=130  Identities=15%  Similarity=0.122  Sum_probs=75.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCcccee-E-----EEEeCCCC-----C------------hHHHHHHHHHHh
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A-----NVYVSQDF-----D------------MRSVFADILRQL  403 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~-----~v~~~~~~-----~------------~~~~~~~i~~~l  403 (501)
                      ..|+|+|+.|+|||||.+.+..  .....-..+.| .     |+......     +            ...-.+..+..+
T Consensus       349 ~riaiiG~NG~GKSTLlk~l~g--~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f  426 (530)
T COG0488         349 DRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF  426 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh--hcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence            5899999999999999999855  22211111111 0     02211100     0            123334444444


Q ss_pred             ccCCCC------CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          404 TQDEVD------EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       404 ~~~~~~------~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      ......      ..+.-+...-.+...+-.++-+||||+--+   .+..+.|...|..+    .+.||+.|.++......
T Consensus       427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~v  502 (530)
T COG0488         427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRV  502 (530)
T ss_pred             CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhh
Confidence            443332      122334445555666667888999999765   34556666666663    45689999999888776


Q ss_pred             CCCCcceeCC
Q 010799          475 SPSIFLHQLR  484 (501)
Q Consensus       475 ~~~~~~~~l~  484 (501)
                      .  ..++.+.
T Consensus       503 a--~~i~~~~  510 (530)
T COG0488         503 A--TRIWLVE  510 (530)
T ss_pred             c--ceEEEEc
Confidence            5  4444444

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.32  E-value=9e-06  Score=82.22  Aligned_cols=159  Identities=12%  Similarity=0.116  Sum_probs=91.2

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccc---cCCccceeEEEEeCCCC-ChHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTK---KNFPCRAWANVYVSQDF-DMRSVF  396 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~---~~f~~~~w~~v~~~~~~-~~~~~~  396 (501)
                      ...+++|.+...+.+.+.+..+ .-++.+.++|++|+|||++|..+.+.....   .......++.+...... .-.+..
T Consensus        15 ~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i   93 (367)
T PRK14970         15 TFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI   93 (367)
T ss_pred             cHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence            3577999999999999999643 344689999999999999999987732110   01111111001111100 000111


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeC-ChHHHhh
Q 010799          397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITR-EAYVARS  473 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR-~~~~~~~  473 (501)
                      .++...+...                . ..+++-++++|+++..  ..++.+...+..  ....+.+|++|. ...+...
T Consensus        94 ~~l~~~~~~~----------------p-~~~~~kiviIDE~~~l~~~~~~~ll~~le~--~~~~~~~Il~~~~~~kl~~~  154 (367)
T PRK14970         94 RNLIDQVRIP----------------P-QTGKYKIYIIDEVHMLSSAAFNAFLKTLEE--PPAHAIFILATTEKHKIIPT  154 (367)
T ss_pred             HHHHHHHhhc----------------c-ccCCcEEEEEeChhhcCHHHHHHHHHHHhC--CCCceEEEEEeCCcccCCHH
Confidence            1222211110                0 1234558999999753  446777776665  444556665553 3333333


Q ss_pred             cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          474 FSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       474 ~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..+...++++.+++.++....+.+.+
T Consensus       155 l~sr~~~v~~~~~~~~~l~~~l~~~~  180 (367)
T PRK14970        155 ILSRCQIFDFKRITIKDIKEHLAGIA  180 (367)
T ss_pred             HHhcceeEecCCccHHHHHHHHHHHH
Confidence            22245688999999999888777643

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.9e-05  Score=76.00  Aligned_cols=154  Identities=14%  Similarity=0.201  Sum_probs=99.0

Q ss_pred             ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..++-|-++++++|.+.+.-+           =+.++-|.+||+||+|||-||+++++  +....|       +.+... 
T Consensus       150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-------IrvvgS-  219 (406)
T COG1222         150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-------IRVVGS-  219 (406)
T ss_pred             hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-------EEeccH-
Confidence            467889999999998876321           24567899999999999999999999  666666       444321 


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYE-KRYLVVLDDVHSP----------------GAWYDLKRIFSPQ  453 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~----------------~~~~~l~~~l~~~  453 (501)
                             ++....-+.+.       .++..+.+.-+. .+++|++|.++..                ..+-+|+..+.-+
T Consensus       220 -------ElVqKYiGEGa-------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF  285 (406)
T COG1222         220 -------ELVQKYIGEGA-------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF  285 (406)
T ss_pred             -------HHHHHHhccch-------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence                   33333333322       345555555554 4899999998761                1233455555553


Q ss_pred             CCCCCCEEEEEeCChHHH-hh-cC--CCCcceeCCCCChHHHHHHHHHhh
Q 010799          454 ASPIGSRVILITREAYVA-RS-FS--PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~~~-~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ......+||..|-...+. .. +.  .-...++++..+.+.-.+.|.-|.
T Consensus       286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt  335 (406)
T COG1222         286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT  335 (406)
T ss_pred             CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence            334567888876544322 11 12  156789998777777777776554

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.32  E-value=9.4e-06  Score=86.27  Aligned_cols=173  Identities=12%  Similarity=0.123  Sum_probs=99.3

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEE-eCCCCChHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVY-VSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~-~~~~~~~~~~~~~i  399 (501)
                      ...+++|.+..+..|.+.+..+ .-.+.+.++|+.|+||||+|+.+++............|  .. ....+.-...+..+
T Consensus        14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~--~~~~~~~Cg~C~sC~~~   90 (620)
T PRK14954         14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVY--LQEVTEPCGECESCRDF   90 (620)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccc--ccccCCCCccCHHHHHH
Confidence            3578999999999999988542 33456889999999999999998874322111111112  10 00111111222222


Q ss_pred             HHHhccCC---C-CCCCCHHHHHHHHHHh----cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEe-CCh
Q 010799          400 LRQLTQDE---V-DEESSLDDLESEFTGI----LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILIT-REA  468 (501)
Q Consensus       400 ~~~l~~~~---~-~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTt-R~~  468 (501)
                      ...-....   . ......+++...+...    ..+.+-++|+|+++..  ...+.|+.++..  ....+.+|++| +..
T Consensus        91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe--Pp~~tv~IL~t~~~~  168 (620)
T PRK14954         91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE--PPPHAIFIFATTELH  168 (620)
T ss_pred             hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC--CCCCeEEEEEeCChh
Confidence            11110000   0 0111233443332222    2244567899998863  457788888888  55566655554 444


Q ss_pred             HHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          469 YVARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      .+...+.+...++++.+++.++....+.+.
T Consensus       169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i  198 (620)
T PRK14954        169 KIPATIASRCQRFNFKRIPLDEIQSQLQMI  198 (620)
T ss_pred             hhhHHHHhhceEEecCCCCHHHHHHHHHHH
Confidence            554444436679999999999988777654

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.32  E-value=6e-06  Score=86.26  Aligned_cols=166  Identities=14%  Similarity=0.152  Sum_probs=95.1

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      .+.++||-+..++.|.+++..+ .-.+...++|+.|+||||+|+.+++.......+..         .++.....+..+.
T Consensus        14 ~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---------~pCg~C~~C~~i~   83 (509)
T PRK14958         14 CFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA---------NPCNDCENCREID   83 (509)
T ss_pred             CHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc---------ccCCCCHHHHHHh
Confidence            3578999999999999999543 23456799999999999999998874321111110         0011111111111


Q ss_pred             HHhccC----CCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799          401 RQLTQD----EVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-Y  469 (501)
Q Consensus       401 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~  469 (501)
                      ..-..+    ........+++...+...    ..++.-++|||+++.  ....+.|+..+..  ....+++|++|.+. .
T Consensus        84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe--pp~~~~fIlattd~~k  161 (509)
T PRK14958         84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE--PPSHVKFILATTDHHK  161 (509)
T ss_pred             cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc--cCCCeEEEEEECChHh
Confidence            100000    000011222222222111    124556899999986  4567888888887  56677777665443 3


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +...+.+....+++.+++.++..+.+.+.
T Consensus       162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~i  190 (509)
T PRK14958        162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHL  190 (509)
T ss_pred             chHHHHHHhhhhhcCCCCHHHHHHHHHHH
Confidence            33333334567889999998877665543

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.31  E-value=1.1e-05  Score=84.72  Aligned_cols=167  Identities=15%  Similarity=0.184  Sum_probs=94.2

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      .+.+++|.+..++.|..++..+ .-.+.+.++|++|+||||+|+.+++.........   .      .++.....+..+.
T Consensus        14 ~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~------~pcg~C~~C~~i~   83 (527)
T PRK14969         14 SFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---A------TPCGVCSACLEID   83 (527)
T ss_pred             cHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---C------CCCCCCHHHHHHh
Confidence            4577999999999999988643 2335678999999999999999887321111000   0      0011011111111


Q ss_pred             HHhccC----CCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799          401 RQLTQD----EVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREA-Y  469 (501)
Q Consensus       401 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~  469 (501)
                      ..-..+    ........+++...+.+.    ..+++-++|+|+++..  ...+.|+..+..  ....+.+|++|.+. .
T Consensus        84 ~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe--pp~~~~fIL~t~d~~k  161 (527)
T PRK14969         84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE--PPEHVKFILATTDPQK  161 (527)
T ss_pred             cCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC--CCCCEEEEEEeCChhh
Confidence            000000    000011222222222111    1245679999999863  457788888887  55667666666443 2


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+....+++.+++.++..+.+.+.+
T Consensus       162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il  191 (527)
T PRK14969        162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHIL  191 (527)
T ss_pred             CchhHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            222222234688999999998887776543

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.31  E-value=7.2e-06  Score=89.91  Aligned_cols=166  Identities=16%  Similarity=0.152  Sum_probs=99.1

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      .+.++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++..........         ..+.....+..+.
T Consensus        13 ~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~---------~pCg~C~sC~~~~   82 (824)
T PRK07764         13 TFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS---------TPCGECDSCVALA   82 (824)
T ss_pred             CHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC---------CCCcccHHHHHHH
Confidence            3577999999999999998643 23356889999999999999999874322111100         0011111111111


Q ss_pred             HH-------hccCCCCCCCCHHHHHHHHHH----hcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799          401 RQ-------LTQDEVDEESSLDDLESEFTG----ILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       401 ~~-------l~~~~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                      ..       +..... .....+++.+...+    -..++.-++|||+++.  ...++.|+.++..  ....+.+|++|.+
T Consensus        83 ~g~~~~~dv~eidaa-s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE--pP~~~~fIl~tt~  159 (824)
T PRK07764         83 PGGPGSLDVTEIDAA-SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE--PPEHLKFIFATTE  159 (824)
T ss_pred             cCCCCCCcEEEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC--CCCCeEEEEEeCC
Confidence            11       000000 01123333221111    1234556889999986  4667788888888  5667766665543


Q ss_pred             -hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          468 -AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       468 -~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                       ..+...+.+...+|++.+++.++..+++.+.+
T Consensus       160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il  192 (824)
T PRK07764        160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC  192 (824)
T ss_pred             hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence             44555555467799999999999888777643

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.31  E-value=4.2e-06  Score=77.92  Aligned_cols=156  Identities=21%  Similarity=0.316  Sum_probs=86.4

Q ss_pred             cccee-ecchh-HHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHH
Q 010799          322 VTAVV-SMEND-ILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       322 ~~~fv-GR~~~-~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~  396 (501)
                      +++|| |-..+ .-.....+.. .......+.|+|+.|+|||.|...+++  .......  .+++  +++      .+..
T Consensus         7 Fdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y--~~~------~~f~   76 (219)
T PF00308_consen    7 FDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVY--LSA------EEFI   76 (219)
T ss_dssp             CCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEE--EEH------HHHH
T ss_pred             cccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhcccccccee--ecH------HHHH
Confidence            34563 54333 2333333433 333345689999999999999999998  4443322  3444  432      3444


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hh-HHHHHHhcCCCCCCCCCEEEEEeCChH---
Q 010799          397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GA-WYDLKRIFSPQASPIGSRVILITREAY---  469 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~-~~~l~~~l~~~~~~~~~~iIiTtR~~~---  469 (501)
                      ..+...+....          ...+++.+.+ -=+|+|||++..   .. .+.+...+... ...|.++|+|+....   
T Consensus        77 ~~~~~~~~~~~----------~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~-~~~~k~li~ts~~~P~~l  144 (219)
T PF00308_consen   77 REFADALRDGE----------IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRL-IESGKQLILTSDRPPSEL  144 (219)
T ss_dssp             HHHHHHHHTTS----------HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHH-HHTTSEEEEEESS-TTTT
T ss_pred             HHHHHHHHccc----------chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHH-HhhCCeEEEEeCCCCccc
Confidence            44444444311          2334444442 247889999762   11 23333333321 234778999985431   


Q ss_pred             ------HHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799          470 ------VARSFSPSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       470 ------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                            +...+. .+.++++++++.++..+++.+++.
T Consensus       145 ~~~~~~L~SRl~-~Gl~~~l~~pd~~~r~~il~~~a~  180 (219)
T PF00308_consen  145 SGLLPDLRSRLS-WGLVVELQPPDDEDRRRILQKKAK  180 (219)
T ss_dssp             TTS-HHHHHHHH-CSEEEEE----HHHHHHHHHHHHH
T ss_pred             cccChhhhhhHh-hcchhhcCCCCHHHHHHHHHHHHH
Confidence                  223333 678999999999999999998764

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK09087 hypothetical protein; Validated

Probab=98.30  E-value=7.7e-06  Score=76.45  Aligned_cols=114  Identities=14%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      .+.+.|||++|+|||+|+..++.  ...     ..+  ++..      ....++.                  ..+.   
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~--~~~-----~~~--i~~~------~~~~~~~------------------~~~~---   87 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWRE--KSD-----ALL--IHPN------EIGSDAA------------------NAAA---   87 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--hcC-----CEE--ecHH------HcchHHH------------------Hhhh---
Confidence            46799999999999999998887  221     123  3321      0000111                  1111   


Q ss_pred             CCceEEEEEcCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCC---------hHHHhhcCCCCcceeCCCCChHHHHHHH
Q 010799          426 YEKRYLVVLDDVHSP-GAWYDLKRIFSPQASPIGSRVILITRE---------AYVARSFSPSIFLHQLRPLNEEESGKLF  495 (501)
Q Consensus       426 ~~~r~LlVlDnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~---------~~~~~~~~~~~~~~~l~~L~~~ea~~Lf  495 (501)
                       +  -+|++||++.. .+.+.+...+... ...|..+|+|++.         +.+...+. ...++++++++.++-.+++
T Consensus        88 -~--~~l~iDDi~~~~~~~~~lf~l~n~~-~~~g~~ilits~~~p~~~~~~~~dL~SRl~-~gl~~~l~~pd~e~~~~iL  162 (226)
T PRK09087         88 -E--GPVLIEDIDAGGFDETGLFHLINSV-RQAGTSLLMTSRLWPSSWNVKLPDLKSRLK-AATVVEIGEPDDALLSQVI  162 (226)
T ss_pred             -c--CeEEEECCCCCCCCHHHHHHHHHHH-HhCCCeEEEECCCChHHhccccccHHHHHh-CCceeecCCCCHHHHHHHH
Confidence             1  27888999752 2234444444331 2347789998873         23333443 6789999999999999999


Q ss_pred             HHhhc
Q 010799          496 QRRLK  500 (501)
Q Consensus       496 ~~~~~  500 (501)
                      ++++.
T Consensus       163 ~~~~~  167 (226)
T PRK09087        163 FKLFA  167 (226)
T ss_pred             HHHHH
Confidence            98763

>PRK05642 DNA replication initiation factor; Validated

Probab=98.30  E-value=5.2e-06  Score=78.17  Aligned_cols=122  Identities=20%  Similarity=0.301  Sum_probs=72.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      ...+.|+|++|+|||.|+..+++  .....-..++|  ++...      +...               ..    .+.+.+
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y--~~~~~------~~~~---------------~~----~~~~~~   95 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVY--LPLAE------LLDR---------------GP----ELLDNL   95 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEE--eeHHH------HHhh---------------hH----HHHHhh
Confidence            36789999999999999999987  43333334556  55321      1110               01    122222


Q ss_pred             CCceEEEEEcCCCCh---hhH-HHHHHhcCCCCCCCCCEEEEEeCChH---------HHhhcCCCCcceeCCCCChHHHH
Q 010799          426 YEKRYLVVLDDVHSP---GAW-YDLKRIFSPQASPIGSRVILITREAY---------VARSFSPSIFLHQLRPLNEEESG  492 (501)
Q Consensus       426 ~~~r~LlVlDnv~~~---~~~-~~l~~~l~~~~~~~~~~iIiTtR~~~---------~~~~~~~~~~~~~l~~L~~~ea~  492 (501)
                      .+- =+|++||++..   ..| ..+...+... ...|..+|+|++...         +...+. .+.++++.+++.++-.
T Consensus        96 ~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~-~~~g~~ilits~~~p~~l~~~~~~L~SRl~-~gl~~~l~~~~~e~~~  172 (234)
T PRK05642         96 EQY-ELVCLDDLDVIAGKADWEEALFHLFNRL-RDSGRRLLLAASKSPRELPIKLPDLKSRLT-LALVFQMRGLSDEDKL  172 (234)
T ss_pred             hhC-CEEEEechhhhcCChHHHHHHHHHHHHH-HhcCCEEEEeCCCCHHHcCccCccHHHHHh-cCeeeecCCCCHHHHH
Confidence            222 26889999742   233 3344444331 234678888887532         111221 4578999999999999


Q ss_pred             HHHHHhh
Q 010799          493 KLFQRRL  499 (501)
Q Consensus       493 ~Lf~~~~  499 (501)
                      +++++++
T Consensus       173 ~il~~ka  179 (234)
T PRK05642        173 RALQLRA  179 (234)
T ss_pred             HHHHHHH
Confidence            9988554

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=9.4e-06  Score=85.65  Aligned_cols=166  Identities=15%  Similarity=0.113  Sum_probs=98.0

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.+..++.|..++..+ .-.+...++|+.|+||||+|+.+++.........   +      .+++....+..+.
T Consensus        11 ~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~------~pCg~C~~C~~i~   80 (584)
T PRK14952         11 TFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A------TPCGVCESCVALA   80 (584)
T ss_pred             cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C------CcccccHHHHHhh
Confidence            3578999999999999999643 2345678999999999999999887422111100   0      0111111122221


Q ss_pred             HHhccCC-----CC-CCCCHHHH---HHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CC
Q 010799          401 RQLTQDE-----VD-EESSLDDL---ESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-RE  467 (501)
Q Consensus       401 ~~l~~~~-----~~-~~~~~~~~---~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~  467 (501)
                      .......     .. .....+++   .+.+... ..+++-++|+|+++.  ...++.|+..+..  ....+.+|++| ..
T Consensus        81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE--pp~~~~fIL~tte~  158 (584)
T PRK14952         81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE--PPEHLIFIFATTEP  158 (584)
T ss_pred             cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc--CCCCeEEEEEeCCh
Confidence            1100000     00 01122222   2222111 124556889999875  5667888888888  56666666555 44


Q ss_pred             hHHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          468 AYVARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       468 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      ..+...+.+....+++.+++.++..+.+.+.
T Consensus       159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i  189 (584)
T PRK14952        159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARI  189 (584)
T ss_pred             HhhHHHHHHhceEEEeeCCCHHHHHHHHHHH
Confidence            4555444445678999999999988877654

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.29  E-value=2.3e-05  Score=78.39  Aligned_cols=173  Identities=16%  Similarity=0.145  Sum_probs=102.0

Q ss_pred             ccccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccce----eEEEEeCCCCChHHH
Q 010799          320 EEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRA----WANVYVSQDFDMRSV  395 (501)
Q Consensus       320 ~~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~----w~~v~~~~~~~~~~~  395 (501)
                      ....+++|.++..+.|.+.+..+ .-++...++|+.|+||+++|..+.+..-.........    -..+.....   ...
T Consensus        16 ~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~---c~~   91 (365)
T PRK07471         16 RETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD---HPV   91 (365)
T ss_pred             CchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC---ChH
Confidence            45678999999999999988553 3345789999999999999998876321111100000    000000000   111


Q ss_pred             HHHHHHHhccC---------CC----CCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCC
Q 010799          396 FADILRQLTQD---------EV----DEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQAS  455 (501)
Q Consensus       396 ~~~i~~~l~~~---------~~----~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~  455 (501)
                      .+.+...-.++         ..    ......++ +..+.+++.     +.+.++|+|+++.  ....+.|+..+..  .
T Consensus        92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe--p  168 (365)
T PRK07471         92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE--P  168 (365)
T ss_pred             HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc--C
Confidence            11111111000         00    00112333 334444443     3466899999986  4566788888777  5


Q ss_pred             CCCCEEEEEeCCh-HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          456 PIGSRVILITREA-YVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       456 ~~~~~iIiTtR~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..++.+|++|.+. .+...+.+.-..+.+.+++.++..+++.+..
T Consensus       169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~  213 (365)
T PRK07471        169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG  213 (365)
T ss_pred             CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence            5677777777665 3433444456799999999999999988753

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.29  E-value=6.1e-06  Score=79.25  Aligned_cols=158  Identities=12%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             ccceeecchhHHHHHHHhhc-------------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799          322 VTAVVSMENDILKLAKLTLN-------------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ  388 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~-------------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~  388 (501)
                      ..+++|.++..+.+.+....             ..+....+.++|++|+|||++|+.+++............+  +.+..
T Consensus         5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~--v~~~~   82 (261)
T TIGR02881         5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHL--IEVER   82 (261)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCce--EEecH
Confidence            45688988777776543211             1234467899999999999999998873211111111123  33321


Q ss_pred             CCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCC
Q 010799          389 DFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIG  458 (501)
Q Consensus       389 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~  458 (501)
                      .    +    +.....      ........+.+....   ..+|+||+++..          +.++.+...+..  ....
T Consensus        83 ~----~----l~~~~~------g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~--~~~~  143 (261)
T TIGR02881        83 A----D----LVGEYI------GHTAQKTREVIKKAL---GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED--NRNE  143 (261)
T ss_pred             H----H----hhhhhc------cchHHHHHHHHHhcc---CCEEEEechhhhccCCccchHHHHHHHHHHHHhc--cCCC
Confidence            1    1    111111      111122223332221   348899999752          244556665555  3333


Q ss_pred             CEEEEEeCChHHHh------hcCC-CCcceeCCCCChHHHHHHHHHhhc
Q 010799          459 SRVILITREAYVAR------SFSP-SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       459 ~~iIiTtR~~~~~~------~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      ..+|+++.......      ...+ ....+.+++++.++-.+++.+.+.
T Consensus       144 ~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~  192 (261)
T TIGR02881       144 FVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK  192 (261)
T ss_pred             EEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence            45556654332211      1111 235689999999999999887653

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.25  E-value=2.5e-05  Score=75.77  Aligned_cols=155  Identities=13%  Similarity=0.091  Sum_probs=85.9

Q ss_pred             ceeecchhHHHHHHHhhc----------C---CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          324 AVVSMENDILKLAKLTLN----------S---SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~~----------~---~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      +++|.++..+++.++...          +   ......+.++|++|+|||++|+.++.............|  +.++.  
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~--v~v~~--   98 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHL--VSVTR--   98 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceE--EEecH--
Confidence            689988777776554210          0   112236899999999999999877662111111111134  44431  


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-----------hhHHHHHHhcCCCCCCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-----------GAWYDLKRIFSPQASPIGS  459 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-----------~~~~~l~~~l~~~~~~~~~  459 (501)
                        .    ++...+.+.      +.......+.+.   ..-+|+||+++..           +.++.|...+..  ...+.
T Consensus        99 --~----~l~~~~~g~------~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~--~~~~~  161 (284)
T TIGR02880        99 --D----DLVGQYIGH------TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN--QRDDL  161 (284)
T ss_pred             --H----HHhHhhccc------chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhc--CCCCE
Confidence              1    222222221      112222233322   2358899999732           234566666665  45566


Q ss_pred             EEEEEeCChHHHhhcC-------CCCcceeCCCCChHHHHHHHHHhh
Q 010799          460 RVILITREAYVARSFS-------PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       460 ~iIiTtR~~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +||+++..........       .....+.+++++.+|-.+++...+
T Consensus       162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l  208 (284)
T TIGR02880       162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML  208 (284)
T ss_pred             EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence            7777765432211111       024679999999999999988764

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.25  E-value=1.3e-05  Score=84.43  Aligned_cols=165  Identities=13%  Similarity=0.155  Sum_probs=95.1

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|-+...+.|.+.+..+ .-.+.+.++|+.|+|||++|+.+++..........         ..++....+..+.
T Consensus        14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~---------~pCg~C~sC~~i~   83 (624)
T PRK14959         14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG---------EPCNTCEQCRKVT   83 (624)
T ss_pred             CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC---------CCCcccHHHHHHh
Confidence            3577899999989898888543 23468889999999999999998874321111100         0111111111111


Q ss_pred             HHhccCC----CCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-h
Q 010799          401 RQLTQDE----VDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-A  468 (501)
Q Consensus       401 ~~l~~~~----~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~  468 (501)
                      .....+.    .......+.+. .+.+.+     .+++-+||||+++.  ...++.|+..+..  ......+|++|.+ .
T Consensus        84 ~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE--P~~~~ifILaTt~~~  160 (624)
T PRK14959         84 QGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE--PPARVTFVLATTEPH  160 (624)
T ss_pred             cCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc--cCCCEEEEEecCChh
Confidence            1100000    00011122211 122222     24566899999986  3557788888776  4456666665554 4


Q ss_pred             HHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          469 YVARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       469 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      .+...+.+....+++.+++.++..+.+.+.
T Consensus       161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~i  190 (624)
T PRK14959        161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKV  190 (624)
T ss_pred             hhhHHHHhhhhccccCCCCHHHHHHHHHHH
Confidence            444333334568899999999998887763

>TIGR00767 rho transcription termination factor Rho

Probab=98.22  E-value=3.2e-06  Score=83.87  Aligned_cols=87  Identities=14%  Similarity=0.045  Sum_probs=61.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC--CCHHHHHHHHHHHhcCCCCcC--cc--hH----HHHH
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE--LERRELVTDILKQVGGSKVEK--QL--DP----QKKL  226 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~--~~~~~l~~~i~~~~~~~~~~~--~~--~~----~~~l  226 (501)
                      ..++|+|.+|+|||||++.+++.-... +|+..+||+++++  .++.++++.++..+-....+.  ..  .+    .+..
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A  247 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA  247 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence            568999999999999999999865443 8999999999976  799999999954433222111  11  11    1222


Q ss_pred             HHH-ccCCeEEEEEecCCC
Q 010799          227 RKL-FTENRYLVVIINART  244 (501)
Q Consensus       227 ~~~-l~~kr~LlVlDdv~~  244 (501)
                      ... -.|++.+|++|++..
T Consensus       248 e~~~~~GkdVVLlIDEitR  266 (415)
T TIGR00767       248 KRLVEHKKDVVILLDSITR  266 (415)
T ss_pred             HHHHHcCCCeEEEEEChhH
Confidence            222 368999999999864

Members of this family differ in the specificity of RNA binding.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.21  E-value=8.2e-06  Score=86.57  Aligned_cols=170  Identities=14%  Similarity=0.141  Sum_probs=98.8

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .+.+++|.+...+.|.+.+..+ .-...+.++|+.|+||||+|+.+++.........  +..+      ..+.....+..
T Consensus        22 ~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~------~~cg~c~~C~~   94 (598)
T PRK09111         22 TFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI------DLCGVGEHCQA   94 (598)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc------ccCcccHHHHH
Confidence            4578999999999999988643 2345789999999999999999987432211110  0001      01111111222


Q ss_pred             HHHHhccCCC----CCCCCHHHHH---HHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CC
Q 010799          399 ILRQLTQDEV----DEESSLDDLE---SEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-RE  467 (501)
Q Consensus       399 i~~~l~~~~~----~~~~~~~~~~---~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~  467 (501)
                      +......+..    ......+++.   +.+... ..+++-++|+|+++.  ....+.|+..+..  ...++.+|++| ..
T Consensus        95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe--Pp~~~~fIl~tte~  172 (598)
T PRK09111         95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE--PPPHVKFIFATTEI  172 (598)
T ss_pred             HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh--CCCCeEEEEEeCCh
Confidence            2211111000    0111223322   222111 123456899999976  3457788888877  56677776655 33


Q ss_pred             hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          468 AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       468 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..+...+.+....+++.+++.++..+.+.+.+
T Consensus       173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~  204 (598)
T PRK09111        173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIA  204 (598)
T ss_pred             hhhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence            44444443355689999999999888887653

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.21  E-value=1e-05  Score=86.43  Aligned_cols=167  Identities=16%  Similarity=0.170  Sum_probs=97.5

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+++|.+...+.|..++..+ .-.+.+.++|+.|+|||++|+.+++.........        -...++....+..+..
T Consensus        15 ~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~~c~~c~~c~~i~~   85 (585)
T PRK14950         15 FAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGRPCGTCEMCRAIAE   85 (585)
T ss_pred             HHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCccCHHHHHHhc
Confidence            477999999999998888543 2345678999999999999999987321111000        0011122223333332


Q ss_pred             HhccCC---CC-CCCCHHHHH---HHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHH
Q 010799          402 QLTQDE---VD-EESSLDDLE---SEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYV  470 (501)
Q Consensus       402 ~l~~~~---~~-~~~~~~~~~---~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~  470 (501)
                      ....+.   .. .....+++.   ..+... ...++-++|||+++.  ...++.|+..+..  ....+.+|++|.+ ..+
T Consensus        86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe--pp~~tv~Il~t~~~~kl  163 (585)
T PRK14950         86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE--PPPHAIFILATTEVHKV  163 (585)
T ss_pred             CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc--CCCCeEEEEEeCChhhh
Confidence            221110   00 112222222   222111 124567899999985  3557788888777  5566666666644 334


Q ss_pred             HhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          471 ARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       471 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.+....+.+.+++.++....+.+.+
T Consensus       164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a  192 (585)
T PRK14950        164 PATILSRCQRFDFHRHSVADMAAHLRKIA  192 (585)
T ss_pred             hHHHHhccceeeCCCCCHHHHHHHHHHHH
Confidence            43333345678899999988887777654

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.21  E-value=8.5e-06  Score=76.54  Aligned_cols=139  Identities=15%  Similarity=0.211  Sum_probs=76.0

Q ss_pred             cccee-ecchhH-HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          322 VTAVV-SMENDI-LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       322 ~~~fv-GR~~~~-~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      .++|+ |..+.. ..+.++.. .....+.+.|+|++|+|||+||..+++  .....-....+  +++....   .   . 
T Consensus        17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~--~~~~~~~~~~~--i~~~~~~---~---~-   84 (227)
T PRK08903         17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVA--DASYGGRNARY--LDAASPL---L---A-   84 (227)
T ss_pred             hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEE--EehHHhH---H---H-
Confidence            45566 444443 34444433 233456899999999999999999988  33221122333  4432210   0   0 


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCC-EEEEEeCChHHHh----
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGS-RVILITREAYVAR----  472 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~-~iIiTtR~~~~~~----  472 (501)
                         +                   .+. ...-+||+||++..  .....+...+... ...+. .+|+|++......    
T Consensus        85 ---~-------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~-~~~~~~~vl~~~~~~~~~~~l~~  140 (227)
T PRK08903         85 ---F-------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRV-RAHGQGALLVAGPAAPLALPLRE  140 (227)
T ss_pred             ---H-------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHH-HHcCCcEEEEeCCCCHHhCCCCH
Confidence               0                   111 12347889999753  3334454444331 12233 4666766433221    


Q ss_pred             ----hcCCCCcceeCCCCChHHHHHHHHH
Q 010799          473 ----SFSPSIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       473 ----~~~~~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                          .+. ....+++++|+.++-..++.+
T Consensus       141 ~L~sr~~-~~~~i~l~pl~~~~~~~~l~~  168 (227)
T PRK08903        141 DLRTRLG-WGLVYELKPLSDADKIAALKA  168 (227)
T ss_pred             HHHHHHh-cCeEEEecCCCHHHHHHHHHH
Confidence                221 347899999999887776655

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.21  E-value=6.3e-05  Score=80.67  Aligned_cols=139  Identities=16%  Similarity=0.131  Sum_probs=87.6

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccc---eeEEEEcCC---CCCHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ---CRAWVPVPE---ELERRELVT  205 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~---~~~wv~vs~---~~~~~~l~~  205 (501)
                      .++++|.+..+..+.+.+...  ....+.|+|.+|+||||||+.+++......++.   ..-|+.+..   ..+...+..
T Consensus       153 ~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~  230 (615)
T TIGR02903       153 FSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN  230 (615)
T ss_pred             HHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence            357899999999888877543  345789999999999999999987654433332   234665532   122332221


Q ss_pred             HH---------------HHHhcCCC-----------------CcC--cchHHHHHHHHccCCeEEEEEecCCCh--hHHH
Q 010799          206 DI---------------LKQVGGSK-----------------VEK--QLDPQKKLRKLFTENRYLVVIINARTP--DIWD  249 (501)
Q Consensus       206 ~i---------------~~~~~~~~-----------------~~~--~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~  249 (501)
                      .+               +...+...                 +-.  ....+..|.+.+++++++++.|+.|..  ..|+
T Consensus       231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~  310 (615)
T TIGR02903       231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK  310 (615)
T ss_pred             HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence            11               11111100                 001  112588999999999999998877753  3488


Q ss_pred             HHhhcCCCCCCCcEEEE--Eecccc
Q 010799          250 ILKYLFPNSSNGSRVIL--SFQEAD  272 (501)
Q Consensus       250 ~l~~~~~~~~~gs~iiv--Ttr~~~  272 (501)
                      .++..+....+..-|++  ||++..
T Consensus       311 ~ik~~~~~~~~~~~VLI~aTt~~~~  335 (615)
T TIGR02903       311 YIKKLFEEGAPADFVLIGATTRDPE  335 (615)
T ss_pred             hhhhhcccCccceEEEEEecccccc
Confidence            88877776666555555  566544

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.20  E-value=7.5e-06  Score=84.70  Aligned_cols=163  Identities=12%  Similarity=0.112  Sum_probs=91.8

Q ss_pred             ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCC-----ccceeEEEE
Q 010799          322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-----PCRAWANVY  385 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-----~~~~w~~v~  385 (501)
                      ..++.|.+..++++.+.+..           +-..++-+.|+|++|+|||++|+.+++  .....+     ....|  ++
T Consensus       181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~f--l~  256 (512)
T TIGR03689       181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN--SLAQRIGAETGDKSYF--LN  256 (512)
T ss_pred             HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH--hhccccccccCCceeE--Ee
Confidence            46688999999999887632           113446799999999999999999998  433331     22334  44


Q ss_pred             eCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh---------hh-----HHHHHHhc
Q 010799          386 VSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP---------GA-----WYDLKRIF  450 (501)
Q Consensus       386 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~---------~~-----~~~l~~~l  450 (501)
                      +...        +++.......   ......+++..++.. .+++++|+||+++..         .+     +..|+..+
T Consensus       257 v~~~--------eLl~kyvGet---e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L  325 (512)
T TIGR03689       257 IKGP--------ELLNKYVGET---ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL  325 (512)
T ss_pred             ccch--------hhcccccchH---HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence            4321        1111110000   001122333333322 246899999999852         11     23444444


Q ss_pred             CCCCCCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          451 SPQASPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       451 ~~~~~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .......+..||.||-... +...+-   .-...+++++++.++..++|.+++
T Consensus       326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l  378 (512)
T TIGR03689       326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL  378 (512)
T ss_pred             cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence            4310123344444553332 222222   134569999999999999998875

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.19  E-value=9.8e-06  Score=89.84  Aligned_cols=151  Identities=17%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~~~  396 (501)
                      +.++||+.++.++...|....  ...+.++|++|+|||++|..++.  ++....      ...+| .+..+.      + 
T Consensus       187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~-~l~l~~------l-  254 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLL-SLDLGL------L-  254 (852)
T ss_pred             CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEE-Eeehhh------h-
Confidence            569999999999999886533  34667999999999999999888  432221      12222 011110      0 


Q ss_pred             HHHHHHhccCCCCCCCCHHH-HHHHHHHhc-CCceEEEEEcCCCCh-------hhHH---HHHHhcCCCCCCCCCEEEEE
Q 010799          397 ADILRQLTQDEVDEESSLDD-LESEFTGIL-YEKRYLVVLDDVHSP-------GAWY---DLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l-~~~r~LlVlDnv~~~-------~~~~---~l~~~l~~~~~~~~~~iIiT  464 (501)
                            ..+...  ....++ +...+.+.- .+.+++|++|+++..       ...+   .|++.+..    ...++|-|
T Consensus       255 ------~ag~~~--~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~----G~l~~Iga  322 (852)
T TIGR03345       255 ------QAGASV--KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR----GELRTIAA  322 (852)
T ss_pred             ------hccccc--chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC----CCeEEEEe
Confidence                  000000  001111 222222221 146799999998763       1122   34444433    23556666


Q ss_pred             eCChHHHh------hcCCCCcceeCCCCChHHHHHHHHH
Q 010799          465 TREAYVAR------SFSPSIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       465 tR~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                      |.......      .+.+...++.+++++.+++.++|..
T Consensus       323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~  361 (852)
T TIGR03345       323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG  361 (852)
T ss_pred             cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHH
Confidence            66543211      1112456899999999999999753

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.19  E-value=2.9e-05  Score=80.88  Aligned_cols=167  Identities=14%  Similarity=0.156  Sum_probs=96.5

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|-+...+.|...+..+ .-.+...++|+.|+|||++|+.+++..-..+..+..         ++........+.
T Consensus        12 ~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---------pC~~C~~C~~~~   81 (535)
T PRK08451         12 HFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---------PCDTCIQCQSAL   81 (535)
T ss_pred             CHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---------CCcccHHHHHHh
Confidence            3577999999999999988543 334577999999999999999887632111100000         000000000000


Q ss_pred             HHhccCC---C-CCCCCHHHHHHHHHHh--c--CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799          401 RQLTQDE---V-DEESSLDDLESEFTGI--L--YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-Y  469 (501)
Q Consensus       401 ~~l~~~~---~-~~~~~~~~~~~~l~~~--l--~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~  469 (501)
                      .......   . ......+++.+.+...  .  .+++-++|+|+++.  .+.++.|+..+..  .+..+++|++|.+. .
T Consensus        82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE--pp~~t~FIL~ttd~~k  159 (535)
T PRK08451         82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE--PPSYVKFILATTDPLK  159 (535)
T ss_pred             hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh--cCCceEEEEEECChhh
Confidence            0000000   0 0011223333333221  1  14566889999986  4567788888887  56677777777653 3


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+....+++.+++.++..+.+.+.+
T Consensus       160 L~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il  189 (535)
T PRK08451        160 LPATILSRTQHFRFKQIPQNSIISHLKTIL  189 (535)
T ss_pred             CchHHHhhceeEEcCCCCHHHHHHHHHHHH
Confidence            333333355799999999999888876543

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.19  E-value=2.1e-06  Score=81.13  Aligned_cols=90  Identities=12%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CChHHHHHHHHHHhccCCCCCCCC------HHHH
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FDMRSVFADILRQLTQDEVDEESS------LDDL  417 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~  417 (501)
                      -..++|.|++|+|||||++.+++..... +|+..+|  +.+...  .++.+++..+...+-..... .+.      ....
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~--v~vI~er~~ev~el~~~I~~~~v~~~~~-~~~~~~~~~~~~~   91 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLI--VLLIDERPEEVTDMQRSVKGEVIASTFD-EPPERHVQVAEMV   91 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEE--EEEccCCCccHHHHHHHhccEEEEecCC-CCHHHHHHHHHHH
Confidence            3689999999999999999999854333 7899999  886555  68888888883332222111 111      1122


Q ss_pred             HHHHHHhc-CCceEEEEEcCCCC
Q 010799          418 ESEFTGIL-YEKRYLVVLDDVHS  439 (501)
Q Consensus       418 ~~~l~~~l-~~~r~LlVlDnv~~  439 (501)
                      ......+. .+++.++++|++..
T Consensus        92 ~~~a~~~~~~G~~vll~iDei~r  114 (249)
T cd01128          92 LEKAKRLVEHGKDVVILLDSITR  114 (249)
T ss_pred             HHHHHHHHHCCCCEEEEEECHHH
Confidence            23333322 46899999999864

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.18  E-value=7.9e-06  Score=90.83  Aligned_cols=151  Identities=16%  Similarity=0.144  Sum_probs=87.8

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-----CC-ccceeEEEEeCCCCChHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-----NF-PCRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-----~f-~~~~w~~v~~~~~~~~~~~~  396 (501)
                      ..++||+++++++.+.|....  ...+.++|++|+|||++|..++.  +...     .. ...+|   .+    ++..+ 
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~--~i~~~~vp~~l~~~~i~---~l----~~~~l-  246 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ--RIVNRDVPDILEDKLVI---TL----DIGLL-  246 (821)
T ss_pred             CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEE---Ee----eHHHH-
Confidence            458999999999999996532  34667999999999999999887  3321     11 23344   11    11111 


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHH-HHHHhcCCceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCCCEEEEEe
Q 010799          397 ADILRQLTQDEVDEESSLDDLES-EFTGILYEKRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIGSRVILIT  465 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~~~iIiTt  465 (501)
                            +.+...  ....++.++ .+.+.....+.+|++|+++..          +..+.|.+.+..    ...++|-+|
T Consensus       247 ------~ag~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r----g~l~~IgaT  314 (821)
T CHL00095        247 ------LAGTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR----GELQCIGAT  314 (821)
T ss_pred             ------hccCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC----CCcEEEEeC
Confidence                  111111  112222232 232222346799999998641          122334444433    235566666


Q ss_pred             CChHHHh------hcCCCCcceeCCCCChHHHHHHHHH
Q 010799          466 REAYVAR------SFSPSIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       466 R~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                      .......      .+......+.+++.+.++...++..
T Consensus       315 t~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~  352 (821)
T CHL00095        315 TLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG  352 (821)
T ss_pred             CHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence            6554322      1111456789999999999888764

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.17  E-value=2.1e-05  Score=81.14  Aligned_cols=165  Identities=14%  Similarity=0.186  Sum_probs=93.1

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-ccceeEEEEeCCCCChHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-PCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ...+++|.+..+..|.+.+..+ .-.+...++|++|+|||++|+.+++.......- +...+         ........+
T Consensus        15 ~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c---------~~c~~C~~i   84 (451)
T PRK06305         15 TFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC---------NQCASCKEI   84 (451)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC---------cccHHHHHH
Confidence            3578999999999999988542 233678899999999999999987732111100 00000         000000000


Q ss_pred             HHH-----hccCCCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799          400 LRQ-----LTQDEVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       400 ~~~-----l~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                      ...     +..... .....+++.. +.+.+     .+.+-++|+|+++.  ....+.|+..+..  ....+.+|++|.+
T Consensus        85 ~~~~~~d~~~i~g~-~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe--p~~~~~~Il~t~~  160 (451)
T PRK06305         85 SSGTSLDVLEIDGA-SHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE--PPQHVKFFLATTE  160 (451)
T ss_pred             hcCCCCceEEeecc-ccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc--CCCCceEEEEeCC
Confidence            000     000000 0011122211 11111     24567889999875  3456778888877  5566767766643


Q ss_pred             -hHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          468 -AYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       468 -~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                       ..+...+.+....+++.+++.++..+.+.+.+
T Consensus       161 ~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~  193 (451)
T PRK06305        161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIA  193 (451)
T ss_pred             hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHH
Confidence             33333333355689999999999888776543

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.17  E-value=3.7e-05  Score=77.83  Aligned_cols=156  Identities=14%  Similarity=0.130  Sum_probs=90.7

Q ss_pred             cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ...++.|.+...++|.+.+..           +-..++.+.++|++|+|||+||+.+++  .....|       +.+.. 
T Consensus       143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f-------i~i~~-  212 (398)
T PTZ00454        143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF-------IRVVG-  212 (398)
T ss_pred             CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-------EEEeh-
Confidence            356799999999998876631           113457899999999999999999998  333332       22211 


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------h----hHHHHHHhcCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------------G----AWYDLKRIFSPQ  453 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~----~~~~l~~~l~~~  453 (501)
                         ..    +.....+      .....+...+.......+.+|+||+++..            .    .+..++..+...
T Consensus       213 ---s~----l~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~  279 (398)
T PTZ00454        213 ---SE----FVQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF  279 (398)
T ss_pred             ---HH----HHHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence               11    1111111      11122233333334457899999997742            0    122333333321


Q ss_pred             CCCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          454 ASPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+..+|.||.... +...+-   .-...+.++..+.++..++|....
T Consensus       280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~  329 (398)
T PTZ00454        280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT  329 (398)
T ss_pred             CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence            1234566777776543 222221   134578999999999888887543

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.16  E-value=4.6e-05  Score=79.20  Aligned_cols=163  Identities=15%  Similarity=0.172  Sum_probs=93.2

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc--ccC-CccceeEEEEe-----CCCCCh
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT--KKN-FPCRAWANVYV-----SQDFDM  392 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~--~~~-f~~~~w~~v~~-----~~~~~~  392 (501)
                      ...+++|.+.....|...+..+ .-.+...++|+.|+||||+|+.++.....  ... ..|...  .++     +...++
T Consensus        14 ~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c--~nc~~i~~g~~~d~   90 (486)
T PRK14953         14 FFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC--ENCVEIDKGSFPDL   90 (486)
T ss_pred             cHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc--HHHHHHhcCCCCcE
Confidence            3567999999999999999653 23456788999999999999998773211  000 001000  000     000010


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHH---HHHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799          393 RSVFADILRQLTQDEVDEESSLD---DLESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITR  466 (501)
Q Consensus       393 ~~~~~~i~~~l~~~~~~~~~~~~---~~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR  466 (501)
                      ..        +...   .....+   .+.+.+... ..+++-++|+|+++.  ....+.|+..+..  .++.+.+|++|.
T Consensus        91 ~e--------idaa---s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe--pp~~~v~Il~tt  157 (486)
T PRK14953         91 IE--------IDAA---SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE--PPPRTIFILCTT  157 (486)
T ss_pred             EE--------EeCc---cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc--CCCCeEEEEEEC
Confidence            00        0000   011122   222222211 124567999999986  3456778888777  555566665553


Q ss_pred             -ChHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          467 -EAYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       467 -~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                       ...+...+.+....+.+.+++.++....+.+.+
T Consensus       158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~  191 (486)
T PRK14953        158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRIC  191 (486)
T ss_pred             CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHH
Confidence             334433333245689999999999888777654

>CHL00181 cbbX CbbX; Provisional

Probab=98.15  E-value=7.1e-05  Score=72.59  Aligned_cols=156  Identities=13%  Similarity=0.110  Sum_probs=86.0

Q ss_pred             cceeecchhHHHHHHHhh---c---------C-CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          323 TAVVSMENDILKLAKLTL---N---------S-SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~---~---------~-~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      .+++|.++..+++.++..   -         . ......+.++|++|+|||++|+.++........-....|  +.++. 
T Consensus        23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~--~~v~~-   99 (287)
T CHL00181         23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHL--LTVTR-   99 (287)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCce--EEecH-
Confidence            358888777665544421   0         0 112245889999999999999999773111111111124  44331 


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-----------hhHHHHHHhcCCCCCCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-----------GAWYDLKRIFSPQASPIG  458 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-----------~~~~~l~~~l~~~~~~~~  458 (501)
                         .    ++...+.+..      .......+...   ..-+|+||+++..           +....|...+..  ...+
T Consensus       100 ---~----~l~~~~~g~~------~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~--~~~~  161 (287)
T CHL00181        100 ---D----DLVGQYIGHT------APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN--QRDD  161 (287)
T ss_pred             ---H----HHHHHHhccc------hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc--CCCC
Confidence               1    2222222111      11222233332   2248999999642           334555555555  4456


Q ss_pred             CEEEEEeCChHHHhh-------cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          459 SRVILITREAYVARS-------FSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       459 ~~iIiTtR~~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..||+++........       .+.....+.+++++.+|..+++.+.+
T Consensus       162 ~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l  209 (287)
T CHL00181        162 LVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML  209 (287)
T ss_pred             EEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence            677777754333211       11145689999999999999988765

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.15  E-value=3.1e-05  Score=79.69  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=87.9

Q ss_pred             ccccee-ecchhHH-HHHHHhhc-C----CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH
Q 010799          321 EVTAVV-SMENDIL-KLAKLTLN-S----SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR  393 (501)
Q Consensus       321 ~~~~fv-GR~~~~~-~l~~~L~~-~----~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~  393 (501)
                      .+++|+ |-...+. .....+.. .    ......+.|+|++|+|||+|+..+++  ........+++  ++.      .
T Consensus       109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~y--i~~------~  178 (445)
T PRK12422        109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILY--VRS------E  178 (445)
T ss_pred             cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEE--eeH------H
Confidence            456675 7665543 22222221 1    11235688999999999999999998  44333233344  432      2


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 010799          394 SVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA-  468 (501)
Q Consensus       394 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~-  468 (501)
                      .+...+...+...      .    ...+++... ..-+|++||++..    ...+++...+... ...|..||+||... 
T Consensus       179 ~f~~~~~~~l~~~------~----~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l-~~~~k~IIlts~~~p  246 (445)
T PRK12422        179 LFTEHLVSAIRSG------E----MQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSL-HTEGKLIVISSTCAP  246 (445)
T ss_pred             HHHHHHHHHHhcc------h----HHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHH-HHCCCcEEEecCCCH
Confidence            3333444443321      1    223444433 3448888998753    1233444433321 12356788888542 


Q ss_pred             H--------HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          469 Y--------VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       469 ~--------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .        +...+. .+.++++++++.++-.+++.+++
T Consensus       247 ~~l~~l~~rL~SR~~-~Gl~~~l~~pd~e~r~~iL~~k~  284 (445)
T PRK12422        247 QDLKAMEERLISRFE-WGIAIPLHPLTKEGLRSFLERKA  284 (445)
T ss_pred             HHHhhhHHHHHhhhc-CCeEEecCCCCHHHHHHHHHHHH
Confidence            1        222222 45799999999999999998765

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.14  E-value=8.5e-05  Score=76.51  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAYVARSFSP  476 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~  476 (501)
                      +...-.+.+.|.-++-+||.|+.-+.      .+.-.++..+..   .-|...|+.|.+-.+...++.
T Consensus       434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~---e~g~t~lfISHDl~vV~~i~d  498 (539)
T COG1123         434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE---ELGLTYLFISHDLAVVRYIAD  498 (539)
T ss_pred             hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH---HhCCEEEEEeCCHHHHHhhCc
Confidence            34445566666677889999997652      222233333333   457899999999988887763

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.14  E-value=2.1e-05  Score=80.98  Aligned_cols=158  Identities=20%  Similarity=0.305  Sum_probs=88.3

Q ss_pred             ccccee-ecchhHH--HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHH
Q 010799          321 EVTAVV-SMENDIL--KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       321 ~~~~fv-GR~~~~~--~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~  395 (501)
                      .+++|+ |-.....  ...+...+ ......+.|||++|+|||.|+..+++  .......  .+.|  +++      .++
T Consensus       103 tFdnFv~g~~n~~a~~~~~~~~~~-~~~~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~y--i~~------~~f  171 (440)
T PRK14088        103 TFENFVVGPGNSFAYHAALEVAKN-PGRYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMY--ITS------EKF  171 (440)
T ss_pred             cccccccCCchHHHHHHHHHHHhC-cCCCCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEE--EEH------HHH
Confidence            356666 6443322  22232322 22244699999999999999999998  5444332  2344  443      334


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---h-hHHHHHHhcCCCCCCCCCEEEEEeC-ChH-
Q 010799          396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---G-AWYDLKRIFSPQASPIGSRVILITR-EAY-  469 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~-~~~~l~~~l~~~~~~~~~~iIiTtR-~~~-  469 (501)
                      +.++...+...      +.    ..+.+......-+|+|||++..   . ...++...+... ...+..||+||. .+. 
T Consensus       172 ~~~~~~~~~~~------~~----~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l-~~~~k~iIitsd~~p~~  240 (440)
T PRK14088        172 LNDLVDSMKEG------KL----NEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNEL-HDSGKQIVICSDREPQK  240 (440)
T ss_pred             HHHHHHHHhcc------cH----HHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHH-HHcCCeEEEECCCCHHH
Confidence            44554444321      12    2233333334558999999752   1 123343333221 123457888874 332 


Q ss_pred             ---HHhhcCC---CCcceeCCCCChHHHHHHHHHhhc
Q 010799          470 ---VARSFSP---SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       470 ---~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                         +...+.+   .+.++.+++++.+.-.+++.+.+.
T Consensus       241 l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~  277 (440)
T PRK14088        241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE  277 (440)
T ss_pred             HHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence               1122211   456889999999999999988753

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.14  E-value=1.9e-05  Score=84.65  Aligned_cols=173  Identities=19%  Similarity=0.187  Sum_probs=90.9

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC---ccceeEEEEeC--CC-CChHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PCRAWANVYVS--QD-FDMRSV  395 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~~~w~~v~~~--~~-~~~~~~  395 (501)
                      .++++|++..+..+.+.+..  .....+.|+|++|+||||+|+.+++.......+   ....|  +.+.  .. .+...+
T Consensus       153 ~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f--v~i~~~~l~~d~~~i  228 (615)
T TIGR02903       153 FSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF--VEVDGTTLRWDPREV  228 (615)
T ss_pred             HHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe--EEEechhccCCHHHH
Confidence            45689999999999888743  344679999999999999999987643222222   12345  4332  11 111111


Q ss_pred             HHHHH---------------HHhccCCCC---------------CCCC-HHHHHHHHHHhcCCceEEEEEcCCCC--hhh
Q 010799          396 FADIL---------------RQLTQDEVD---------------EESS-LDDLESEFTGILYEKRYLVVLDDVHS--PGA  442 (501)
Q Consensus       396 ~~~i~---------------~~l~~~~~~---------------~~~~-~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~  442 (501)
                      ...++               ...+.....               +... .......+.+.+.++++.++-|..|.  ...
T Consensus       229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~  308 (615)
T TIGR02903       229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV  308 (615)
T ss_pred             hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence            11111               000000000               0000 11234455555555555555444433  123


Q ss_pred             HHHHHHhcCCCCCCCCCEEEE--EeCChH-HHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799          443 WYDLKRIFSPQASPIGSRVIL--ITREAY-VARSFSPSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       443 ~~~l~~~l~~~~~~~~~~iIi--TtR~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      |..+...+..  ..+...+++  ||++.. +...+.+....+.+.+++.+|.++++.+.+.
T Consensus       309 ~~~ik~~~~~--~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~  367 (615)
T TIGR02903       309 PKYIKKLFEE--GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE  367 (615)
T ss_pred             chhhhhhccc--CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence            4444444444  333344554  555432 2222222334778999999999999988653

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.14  E-value=8.2e-06  Score=82.32  Aligned_cols=108  Identities=11%  Similarity=-0.029  Sum_probs=73.9

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV  211 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~  211 (501)
                      ..++++.+...+.+...|..    .+.|.++|++|+|||++|+.+.+.......|+...||++++.++..+++....-. 
T Consensus       174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-  248 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-  248 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-
Confidence            35688889999999999984    3467889999999999999998765555678889999999999988876433110 


Q ss_pred             cCCCCcCcchHHHHHHHHcc--CCeEEEEEecCCC
Q 010799          212 GGSKVEKQLDPQKKLRKLFT--ENRYLVVIINART  244 (501)
Q Consensus       212 ~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~  244 (501)
                      +........-..+.+....+  ++.++||+|++-.
T Consensus       249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR  283 (459)
T PRK11331        249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR  283 (459)
T ss_pred             CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence            00000001111222333322  4689999999864

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.14  E-value=1.3e-05  Score=87.21  Aligned_cols=152  Identities=14%  Similarity=0.185  Sum_probs=87.2

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC-----C-ccceeEEEEeCCCCChHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN-----F-PCRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-----f-~~~~w~~v~~~~~~~~~~~~  396 (501)
                      +.++||+.++.++.+.|....  ...+.|+|++|+|||++|..++.  .+...     + .+.+|   .    .++..+ 
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~--~i~~~~vP~~l~~~~~~---~----l~~~~l-  253 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIY---S----LDIGSL-  253 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH--HHHhcCCCchhcCCeEE---e----ccHHHH-
Confidence            469999999999999886632  24557899999999999999887  32211     1 33334   1    111111 


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh----------hhHH-HHHHhcCCCCCCCCCEEEEE
Q 010799          397 ADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP----------GAWY-DLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~----------~~~~-~l~~~l~~~~~~~~~~iIiT  464 (501)
                            +.+...  ....+.....+.+.+ ...+.+|+||+++..          .+.. .+.+.+..    ...++|-+
T Consensus       254 ------laG~~~--~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~----g~i~vIgA  321 (758)
T PRK11034        254 ------LAGTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS----GKIRVIGS  321 (758)
T ss_pred             ------hcccch--hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC----CCeEEEec
Confidence                  111110  112222333332323 345679999999742          1222 23333333    23445555


Q ss_pred             eCChHHHh------hcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          465 TREAYVAR------SFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       465 tR~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      |....+..      .+.+....+.+++++.+++.+++...
T Consensus       322 Tt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~  361 (758)
T PRK11034        322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL  361 (758)
T ss_pred             CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence            55443211      11124568999999999999998854

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.13  E-value=4.2e-05  Score=81.76  Aligned_cols=163  Identities=15%  Similarity=0.169  Sum_probs=95.6

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-ccceeEEEEeCCCCChHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-PCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ...+++|.+...+.|...+..+ .-.+.+.++|+.|+|||++|+.+.........- ....     |    .....+..+
T Consensus        15 ~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~-----C----g~C~sC~~~   84 (614)
T PRK14971         15 TFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA-----C----NECESCVAF   84 (614)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC-----C----CcchHHHHH
Confidence            3577999999999999998543 334678999999999999999887632111000 0000     0    000000000


Q ss_pred             HHH-------hccCCCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-
Q 010799          400 LRQ-------LTQDEVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-  465 (501)
Q Consensus       400 ~~~-------l~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-  465 (501)
                      ...       +...   .....+++...+.+.    ..+.+-++|+|+++.  ...++.|+..+..  ....+.+|++| 
T Consensus        85 ~~~~~~n~~~ld~~---~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe--pp~~tifIL~tt  159 (614)
T PRK14971         85 NEQRSYNIHELDAA---SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE--PPSYAIFILATT  159 (614)
T ss_pred             hcCCCCceEEeccc---ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC--CCCCeEEEEEeC
Confidence            000       0000   011122222222111    123456889999886  4567888888888  55666666554 


Q ss_pred             CChHHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          466 REAYVARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       466 R~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      ....+...+.+...++++.+++.++....+.+.
T Consensus       160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~i  192 (614)
T PRK14971        160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYV  192 (614)
T ss_pred             CchhchHHHHhhhheeecCCCCHHHHHHHHHHH
Confidence            445555554446678999999999988877754

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.12  E-value=1.8e-06  Score=78.13  Aligned_cols=48  Identities=19%  Similarity=0.165  Sum_probs=32.4

Q ss_pred             ccccchhhHHHHHHHHh-cCCCCeeEEEEEeeCChhhHHHHhhhhcccc
Q 010799          134 GILDLNKEVNKLADFLI-RSHSSLFTISVVDVAGSVMTTDLWKSYECET  181 (501)
Q Consensus       134 ~~vg~~~~~~~l~~~L~-~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~  181 (501)
                      .|+||+++.++|...|. ......+.+.|+|.+|+|||+|.+.++....
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            37999999999999994 2234578999999999999999999885433

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.12  E-value=3.6e-05  Score=82.41  Aligned_cols=163  Identities=15%  Similarity=0.208  Sum_probs=93.9

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.+...+.|...+..+ .-.+...++|+.|+|||++|+.++...-..+...  .+  -.|       ..+....
T Consensus        16 ~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~--~pC-------~~C~~~~   83 (725)
T PRK07133         16 TFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LL--EPC-------QECIENV   83 (725)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CC--Cch-------hHHHHhh
Confidence            3577999999999999999643 3346788999999999999999877321111100  00  000       0000000


Q ss_pred             H-H---hccCCCCCCCCHH---HHHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE-EeCChH
Q 010799          401 R-Q---LTQDEVDEESSLD---DLESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL-ITREAY  469 (501)
Q Consensus       401 ~-~---l~~~~~~~~~~~~---~~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi-TtR~~~  469 (501)
                      . .   +..... .....+   ++.+.+... ..+++-++|+|+++.  ...++.|+..+-.  .+..+.+|+ |+....
T Consensus        84 ~~~~Dvieidaa-sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE--PP~~tifILaTte~~K  160 (725)
T PRK07133         84 NNSLDIIEMDAA-SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE--PPKHVIFILATTEVHK  160 (725)
T ss_pred             cCCCcEEEEecc-ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc--CCCceEEEEEcCChhh
Confidence            0 0   000000 001122   222222211 124566899999975  4567788888777  455555554 444445


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +...+.+....+++.+++.++..+.+...
T Consensus       161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~i  189 (725)
T PRK07133        161 IPLTILSRVQRFNFRRISEDEIVSRLEFI  189 (725)
T ss_pred             hhHHHHhhceeEEccCCCHHHHHHHHHHH
Confidence            54443335568999999999988877653

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.11  E-value=4.5e-06  Score=78.38  Aligned_cols=44  Identities=23%  Similarity=0.134  Sum_probs=35.6

Q ss_pred             cccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccc
Q 010799          135 ILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECE  180 (501)
Q Consensus       135 ~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~  180 (501)
                      |+||++++++|.+++..+  ....+.|+|..|+|||+|++.+.+..
T Consensus         1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen    1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence            689999999999999864  35678899999999999999998643

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.11  E-value=1.4e-05  Score=81.41  Aligned_cols=156  Identities=15%  Similarity=0.156  Sum_probs=91.2

Q ss_pred             cccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ...++.|.+..+++|.+.+...           -..++.+.|+|++|+|||++|+.+++  .....|       +.+...
T Consensus       181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-------i~V~~s  251 (438)
T PTZ00361        181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-------LRVVGS  251 (438)
T ss_pred             CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-------EEEecc
Confidence            3467899999999998877321           12346789999999999999999998  444443       222111


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----------------hHHHHHHhcCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----------------AWYDLKRIFSPQ  453 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----------------~~~~l~~~l~~~  453 (501)
                          .+.    ....+      .....+...+.....+.+.+|+||+++...                .+..++..+...
T Consensus       252 ----eL~----~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~  317 (438)
T PTZ00361        252 ----ELI----QKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF  317 (438)
T ss_pred             ----hhh----hhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence                111    11111      111222233333334567899999976410                112233222221


Q ss_pred             CCCCCCEEEEEeCChHH-HhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          454 ASPIGSRVILITREAYV-ARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~~-~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+..||.||..... ...+-   .....+.+++.+.++..++|..++
T Consensus       318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~  367 (438)
T PTZ00361        318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT  367 (438)
T ss_pred             cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence            01335677777765442 22221   135689999999999999998765

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.11  E-value=0.00024  Score=75.16  Aligned_cols=23  Identities=35%  Similarity=0.733  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -.+++|.|+.|+|||||++.++.
T Consensus       289 Ge~~~l~G~NGsGKSTLl~~i~G  311 (510)
T PRK15439        289 GEILGLAGVVGAGRTELAETLYG  311 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcC
Confidence            36999999999999999999876

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.11  E-value=2.7e-05  Score=80.32  Aligned_cols=159  Identities=14%  Similarity=0.224  Sum_probs=90.2

Q ss_pred             ccccee-ecchh--HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHH
Q 010799          321 EVTAVV-SMEND--ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       321 ~~~~fv-GR~~~--~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~  395 (501)
                      .+++|+ |....  ...........+.....+.|+|..|+|||.|+..+++  .......  .+++  ++.      .++
T Consensus       113 tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~y--v~~------~~f  182 (450)
T PRK14087        113 TFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSY--MSG------DEF  182 (450)
T ss_pred             chhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEE--EEH------HHH
Confidence            456665 55443  2222222222222335689999999999999999988  4433222  2233  332      345


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh---
Q 010799          396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA---  468 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~---  468 (501)
                      ...+...+....        +....+.+.+.+ .-+|||||++..    ...+.+...+... ...+..||+|+...   
T Consensus       183 ~~~~~~~l~~~~--------~~~~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~-~~~~k~iIltsd~~P~~  252 (450)
T PRK14087        183 ARKAVDILQKTH--------KEIEQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNF-IENDKQLFFSSDKSPEL  252 (450)
T ss_pred             HHHHHHHHHHhh--------hHHHHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHH-HHcCCcEEEECCCCHHH
Confidence            555555544211        122334444432 348889999752    2234444443331 23455788886543   


Q ss_pred             ------HHHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799          469 ------YVARSFSPSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       469 ------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                            .+...+. .+.++.+++++.++-.+++.+++.
T Consensus       253 l~~l~~rL~SR~~-~Gl~~~L~~pd~e~r~~iL~~~~~  289 (450)
T PRK14087        253 LNGFDNRLITRFN-MGLSIAIQKLDNKTATAIIKKEIK  289 (450)
T ss_pred             HhhccHHHHHHHh-CCceeccCCcCHHHHHHHHHHHHH
Confidence                  1222332 577899999999999999988763

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.10  E-value=3.4e-05  Score=82.18  Aligned_cols=166  Identities=14%  Similarity=0.177  Sum_probs=94.8

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.+...+.|...+..+ .-.+...++|+.|+|||++|+.+++.....+....         .+++....+..+.
T Consensus        14 ~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---------~~c~~c~~c~~i~   83 (576)
T PRK14965         14 TFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---------EPCNVCPPCVEIT   83 (576)
T ss_pred             CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---------CCCCccHHHHHHh
Confidence            3578999999999999988543 23467789999999999999998874211111100         0011111111111


Q ss_pred             HHhccCC---C-CCCCCHHH---HHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CChH
Q 010799          401 RQLTQDE---V-DEESSLDD---LESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-REAY  469 (501)
Q Consensus       401 ~~l~~~~---~-~~~~~~~~---~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~~~  469 (501)
                      .--..+.   . ......++   +...+... ..+++-++|+|+++.  ....+.|+..+..  ....+.+|++| ....
T Consensus        84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe--pp~~~~fIl~t~~~~k  161 (576)
T PRK14965         84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE--PPPHVKFIFATTEPHK  161 (576)
T ss_pred             cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc--CCCCeEEEEEeCChhh
Confidence            1000000   0 00111222   22222211 123456889999976  4557888888877  55666666555 4455


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +...+.+....+++.+++.++....+...
T Consensus       162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i  190 (576)
T PRK14965        162 VPITILSRCQRFDFRRIPLQKIVDRLRYI  190 (576)
T ss_pred             hhHHHHHhhhhhhcCCCCHHHHHHHHHHH
Confidence            55544435568889999998887776643

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.10  E-value=7.4e-05  Score=71.39  Aligned_cols=106  Identities=16%  Similarity=0.261  Sum_probs=78.3

Q ss_pred             chhHHHHHHHhhcC-CCCceEEEEEecCCCChHHHHHHHHcccccccCCc------cceeEEEEeCCCCChHHHHHHHHH
Q 010799          329 ENDILKLAKLTLNS-SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP------CRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       329 ~~~~~~l~~~L~~~-~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~------~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      .+.+++|.+++..+ ..+.+.+.|+|.+|.|||+++++|..  .+-..++      .++.  +-+...++...++..|+.
T Consensus        43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~--~hp~~~d~~~~~~PVv~--vq~P~~p~~~~~Y~~IL~  118 (302)
T PF05621_consen   43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRR--LHPPQSDEDAERIPVVY--VQMPPEPDERRFYSAILE  118 (302)
T ss_pred             HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHH--HCCCCCCCCCccccEEE--EecCCCCChHHHHHHHHH
Confidence            35566677777543 45668999999999999999999986  3322221      2444  667888899999999999


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                      .++.+... ..+.........+.++. .--+||||++.+
T Consensus       119 ~lgaP~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~  156 (302)
T PF05621_consen  119 ALGAPYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHN  156 (302)
T ss_pred             HhCcccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence            99998763 44556666666677765 345899999987

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.07  E-value=4.2e-05  Score=75.55  Aligned_cols=125  Identities=11%  Similarity=0.150  Sum_probs=84.3

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc----cccccccceeEEEE-cCCCCCHHHHHHHH
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC----ETVKEYFQCRAWVP-VPEELERRELVTDI  207 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~----~~v~~~F~~~~wv~-vs~~~~~~~l~~~i  207 (501)
                      .+++|.+..++.|.+.+..+. -.+..-++|+.|+||||+|+.++..    .....|.|...|.. -+......+ ++++
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~   81 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI   81 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence            468899999999999997543 3456788999999999999888752    22345778777765 334444444 3334


Q ss_pred             HHHhcCCCCcCcchHHHHHHHHccCCeEEEEEe-cCCChhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799          208 LKQVGGSKVEKQLDPQKKLRKLFTENRYLVVII-NARTPDIWDILKYLFPNSSNGSRVILSFQEAD  272 (501)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD-dv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~  272 (501)
                      .+.+.....             ..++|++||=+ |..+...|+.|...+..-..++.+|++|.+.+
T Consensus        82 ~~~~~~~p~-------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~  134 (313)
T PRK05564         82 IEEVNKKPY-------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE  134 (313)
T ss_pred             HHHHhcCcc-------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence            444432111             12445544444 45677889999999988778999999886654

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.07  E-value=6.8e-05  Score=79.24  Aligned_cols=167  Identities=14%  Similarity=0.089  Sum_probs=97.4

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|-+.....|...+..+ .-.+...++|+.|+|||++|+.+++..-.......     ..    +........+.
T Consensus        14 ~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-----~p----C~~C~~C~~i~   83 (563)
T PRK06647         14 DFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-----MP----CGECSSCKSID   83 (563)
T ss_pred             CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-----CC----CccchHHHHHH
Confidence            3578999999999999999653 34467899999999999999999874221111100     00    00001111111


Q ss_pred             HHhccC---CC-CCCCCHHHHHHHH---HHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799          401 RQLTQD---EV-DEESSLDDLESEF---TGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY  469 (501)
Q Consensus       401 ~~l~~~---~~-~~~~~~~~~~~~l---~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~  469 (501)
                      ..-...   .. ......+++.+..   ... ..+++-++|+|+++.  ...++.|+..+..  .+..+.+|++|.+ ..
T Consensus        84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe--pp~~~vfI~~tte~~k  161 (563)
T PRK06647         84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE--PPPYIVFIFATTEVHK  161 (563)
T ss_pred             cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc--CCCCEEEEEecCChHH
Confidence            110000   00 0012233333222   111 134566899999986  4557788888877  5666666666544 34


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+....+++.+++.++..+.+.+.+
T Consensus       162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~  191 (563)
T PRK06647        162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVC  191 (563)
T ss_pred             hHHHHHHhceEEEecCCCHHHHHHHHHHHH
Confidence            444333355678999999998887776643

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.05  E-value=7.5e-05  Score=78.51  Aligned_cols=157  Identities=12%  Similarity=0.126  Sum_probs=88.3

Q ss_pred             ccccceeecchhHHHHHHHhh---c-------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          320 EEVTAVVSMENDILKLAKLTL---N-------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       320 ~~~~~fvGR~~~~~~l~~~L~---~-------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ....+++|-++..+++.+.+.   .       +...++-+.++|++|+|||+||+.++.  ...-.     |  +.++. 
T Consensus        52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~--~~~~~-----~--~~i~~-  121 (495)
T TIGR01241        52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAGVP-----F--FSISG-  121 (495)
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCC-----e--eeccH-
Confidence            345788998887776655442   1       123446799999999999999999988  33222     2  33321 


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----------------hHHHHHHhcCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----------------AWYDLKRIFSPQ  453 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----------------~~~~l~~~l~~~  453 (501)
                         .+    +.....      ......+...+.......+.+|+||+++...                .+..++..+...
T Consensus       122 ---~~----~~~~~~------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~  188 (495)
T TIGR01241       122 ---SD----FVEMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF  188 (495)
T ss_pred             ---HH----HHHHHh------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence               11    111111      1122333444444445667899999996521                112233333221


Q ss_pred             CCCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          454 ASPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+..||.||.... +...+.   .-...+.++..+.++-.++|..++
T Consensus       189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l  238 (495)
T TIGR01241       189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHA  238 (495)
T ss_pred             cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHH
Confidence            1233445555665432 222221   135689999999998888887654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.05  E-value=3.2e-05  Score=86.12  Aligned_cols=152  Identities=12%  Similarity=0.109  Sum_probs=85.4

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~~~  396 (501)
                      +.++||+.++.++...|....  ...+.++|++|+|||+||..++.  +.....      ...+| .+.++      .++
T Consensus       178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~--~i~~~~vp~~l~~~~~~-~l~l~------~l~  246 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ--RIINGEVPEGLKGRRVL-ALDMG------ALV  246 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH--HhhcCCCchhhCCCEEE-EEehh------hhh
Confidence            559999999999999986533  34677999999999999999887  332211      12222 02211      111


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHH-HHHHhc-CCceEEEEEcCCCChh----------hHHHHHHhcCCCCCCCCCEEEEE
Q 010799          397 ADILRQLTQDEVDEESSLDDLES-EFTGIL-YEKRYLVVLDDVHSPG----------AWYDLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~-~l~~~l-~~~r~LlVlDnv~~~~----------~~~~l~~~l~~~~~~~~~~iIiT  464 (501)
                             .+...  ....++.++ .+.+.. ...+.+|++|+++...          ..+.|.+.+..    ...++|-+
T Consensus       247 -------ag~~~--~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~----g~l~~Iga  313 (857)
T PRK10865        247 -------AGAKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR----GELHCVGA  313 (857)
T ss_pred             -------hccch--hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc----CCCeEEEc
Confidence                   00000  011222222 222222 2467999999987631          22334443333    23455555


Q ss_pred             eCChHHH------hhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          465 TREAYVA------RSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       465 tR~~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      |......      ....+....+.+...+.++..+++...
T Consensus       314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l  353 (857)
T PRK10865        314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL  353 (857)
T ss_pred             CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence            5544431      111113346778888999999988653

>PRK06620 hypothetical protein; Validated

Probab=98.03  E-value=4.3e-05  Score=70.77  Aligned_cols=109  Identities=20%  Similarity=0.240  Sum_probs=66.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      +.+.|||++|+|||+|+..+++.  ...     .+  +...  ...                      +       +.. 
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~--~~~-----~~--~~~~--~~~----------------------~-------~~~-   83 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNL--SNA-----YI--IKDI--FFN----------------------E-------EIL-   83 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhc--cCC-----EE--cchh--hhc----------------------h-------hHH-
Confidence            67999999999999999988773  221     22  2200  000                      0       001 


Q ss_pred             CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChH-------HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          427 EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAY-------VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       427 ~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...-+|++||++...+ ..+...+... ...|..+|+|++...       +...+. .+.+++++++++++-.+++.+++
T Consensus        84 ~~~d~lliDdi~~~~~-~~lf~l~N~~-~e~g~~ilits~~~p~~l~l~~L~SRl~-~gl~~~l~~pd~~~~~~~l~k~~  160 (214)
T PRK06620         84 EKYNAFIIEDIENWQE-PALLHIFNII-NEKQKYLLLTSSDKSRNFTLPDLSSRIK-SVLSILLNSPDDELIKILIFKHF  160 (214)
T ss_pred             hcCCEEEEeccccchH-HHHHHHHHHH-HhcCCEEEEEcCCCccccchHHHHHHHh-CCceEeeCCCCHHHHHHHHHHHH
Confidence            1224788999985422 2233322211 134678999987443       222222 56699999999999888888765

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.03  E-value=0.00064  Score=72.30  Aligned_cols=57  Identities=12%  Similarity=0.217  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +...-.+...+..++-+|++|+--+   ......+...+..  .  +..||++|.+......++
T Consensus       443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~--~--~~tvi~vsHd~~~~~~~~  502 (530)
T PRK15064        443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEK--Y--EGTLIFVSHDREFVSSLA  502 (530)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH--C--CCEEEEEeCCHHHHHHhC
Confidence            3444455555566778999999765   2333445555555  3  347999999988766654

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.02  E-value=4.6e-05  Score=78.10  Aligned_cols=132  Identities=17%  Similarity=0.267  Sum_probs=76.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG  423 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~  423 (501)
                      ...+.|+|++|+|||.|+..+++  .......  .+++  +++      .+....+...+...      ..+.    +.+
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~y--i~~------~~~~~~~~~~~~~~------~~~~----~~~  195 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVY--VSS------EKFTNDFVNALRNN------KMEE----FKE  195 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEE--EEH------HHHHHHHHHHHHcC------CHHH----HHH
Confidence            35789999999999999999998  4444432  2334  432      23334444444321      1222    233


Q ss_pred             hcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh-H--------HHhhcCCCCcceeCCCCChHH
Q 010799          424 ILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA-Y--------VARSFSPSIFLHQLRPLNEEE  490 (501)
Q Consensus       424 ~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~--------~~~~~~~~~~~~~l~~L~~~e  490 (501)
                      .+.+ .-+|+|||++..    ...+.+...+... ...+..+|+|+... .        +...+. .+.++.+++++.++
T Consensus       196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~-~~~~~~iiits~~~p~~l~~l~~~l~SRl~-~g~~v~i~~pd~~~  272 (405)
T TIGR00362       196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNAL-HENGKQIVLTSDRPPKELPGLEERLRSRFE-WGLVVDIEPPDLET  272 (405)
T ss_pred             HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHH-HHCCCCEEEecCCCHHHHhhhhhhhhhhcc-CCeEEEeCCCCHHH
Confidence            3322 238899999752    1223344433321 12356678877642 2        111221 34679999999999


Q ss_pred             HHHHHHHhhc
Q 010799          491 SGKLFQRRLK  500 (501)
Q Consensus       491 a~~Lf~~~~~  500 (501)
                      -.+++.+++.
T Consensus       273 r~~il~~~~~  282 (405)
T TIGR00362       273 RLAILQKKAE  282 (405)
T ss_pred             HHHHHHHHHH
Confidence            9999988763

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.02  E-value=9.9e-05  Score=78.27  Aligned_cols=167  Identities=16%  Similarity=0.167  Sum_probs=95.6

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.+...+.|.+.+..+ .-.+...++|+.|+|||++|+.+.+.....+.-..         .+++....+..+.
T Consensus        14 ~f~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~---------~pC~~C~~C~~i~   83 (559)
T PRK05563         14 TFEDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG---------EPCNECEICKAIT   83 (559)
T ss_pred             cHHhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCCccHHHHHHh
Confidence            3578999999999999999653 23467888999999999999998763211111000         0111111222221


Q ss_pred             HHhccCC----CCCCCCHHH---HHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEe-CChH
Q 010799          401 RQLTQDE----VDEESSLDD---LESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILIT-REAY  469 (501)
Q Consensus       401 ~~l~~~~----~~~~~~~~~---~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTt-R~~~  469 (501)
                      .....+.    .......++   +...+... ..++.-++|+|+++.  ...++.|+..+..  .+..+..|++| ....
T Consensus        84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe--pp~~~ifIlatt~~~k  161 (559)
T PRK05563         84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE--PPAHVIFILATTEPHK  161 (559)
T ss_pred             cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC--CCCCeEEEEEeCChhh
Confidence            1110000    000112222   22222211 124566889999985  4567888888777  45555555544 4444


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +...+.+....+++.+++.++..+.+...+
T Consensus       162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~  191 (559)
T PRK05563        162 IPATILSRCQRFDFKRISVEDIVERLKYIL  191 (559)
T ss_pred             CcHHHHhHheEEecCCCCHHHHHHHHHHHH
Confidence            444333345678899999988887776543

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.01  E-value=9.2e-05  Score=72.70  Aligned_cols=170  Identities=16%  Similarity=0.183  Sum_probs=99.9

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-------------CCccceeEEEEeCC
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-------------NFPCRAWANVYVSQ  388 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-------------~f~~~~w~~v~~~~  388 (501)
                      ..+++|.+...+.|.+.+..+ .-++...++|+.|+||+++|..++...-...             ..+...|  +.-..
T Consensus         3 f~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~--i~p~~   79 (314)
T PRK07399          3 FANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW--VEPTY   79 (314)
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE--Eeccc
Confidence            457899999999999998543 3347999999999999999988766321111             1122233  22100


Q ss_pred             CCChHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCE
Q 010799          389 DFDMRSVFADILRQLTQDEVD-EESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSR  460 (501)
Q Consensus       389 ~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~  460 (501)
                      ..+-...-...+...+..... .....++ +..+.+++.     +.+-++|+|+++.  ....+.|+..+-.  .+ .+.
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE--Pp-~~~  155 (314)
T PRK07399         80 QHQGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE--PG-NGT  155 (314)
T ss_pred             cccccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC--CC-CCe
Confidence            000000000111111100000 0112222 234444443     3466889999876  4567888888888  44 555


Q ss_pred             EEEEe-CChHHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          461 VILIT-REAYVARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       461 iIiTt-R~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +|++| ....+...+.+....+++++++.++..+.+.+.
T Consensus       156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~  194 (314)
T PRK07399        156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRL  194 (314)
T ss_pred             EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHh
Confidence            55555 444455555556789999999999999988865

>PRK13409 putative ATPase RIL; Provisional

Probab=97.99  E-value=0.00071  Score=72.44  Aligned_cols=126  Identities=15%  Similarity=0.209  Sum_probs=65.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccce-eE-EEE-eCCC------CChHHHH-------------HHHHHHhc
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRA-WA-NVY-VSQD------FDMRSVF-------------ADILRQLT  404 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~-w~-~v~-~~~~------~~~~~~~-------------~~i~~~l~  404 (501)
                      .+++|.|+.|+|||||++.++..  .... .+.+ |+ .+. +.+.      .++.+.+             .+++..+.
T Consensus       366 eiv~l~G~NGsGKSTLlk~L~Gl--~~p~-~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~  442 (590)
T PRK13409        366 EVIGIVGPNGIGKTTFAKLLAGV--LKPD-EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ  442 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC--CCCC-ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence            59999999999999999998863  2111 1111 10 011 1111      1222211             12222222


Q ss_pred             cCCC-----CCCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          405 QDEV-----DEESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       405 ~~~~-----~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      ....     ...+.-+...-.+...+...+-+++||+--+   ......+...+.......+..||++|.+...+..+.
T Consensus       443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a  521 (590)
T PRK13409        443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS  521 (590)
T ss_pred             CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            2110     0122333444455666667788999999654   222333333333310123678999999987666544

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.98  E-value=6.3e-05  Score=78.12  Aligned_cols=157  Identities=16%  Similarity=0.238  Sum_probs=87.1

Q ss_pred             ccccee-ecchh--HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc--ceeEEEEeCCCCChHHH
Q 010799          321 EVTAVV-SMEND--ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC--RAWANVYVSQDFDMRSV  395 (501)
Q Consensus       321 ~~~~fv-GR~~~--~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~--~~w~~v~~~~~~~~~~~  395 (501)
                      .+++|+ |....  ...+.++..........+.|+|++|+|||+|+..+++  .....+..  +.+  +++      .++
T Consensus       120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~y--i~~------~~~  189 (450)
T PRK00149        120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVY--VTS------EKF  189 (450)
T ss_pred             cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEE--EEH------HHH
Confidence            345654 54443  2222333322223345799999999999999999998  55554432  334  433      223


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCChH--
Q 010799          396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREAY--  469 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~~--  469 (501)
                      ...+...+...      ..    ..+.+.+. +.-+|+|||++..    ...+.+...+... ...+..+|+||....  
T Consensus       190 ~~~~~~~~~~~------~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l-~~~~~~iiits~~~p~~  257 (450)
T PRK00149        190 TNDFVNALRNN------TM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNAL-HEAGKQIVLTSDRPPKE  257 (450)
T ss_pred             HHHHHHHHHcC------cH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHH-HHCCCcEEEECCCCHHH
Confidence            33344443221      12    22333333 2348999999752    1233444433221 123456788776432  


Q ss_pred             -------HHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799          470 -------VARSFSPSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       470 -------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                             +...+. .+.++++++++.++-.+++.+++.
T Consensus       258 l~~l~~~l~SRl~-~gl~v~i~~pd~~~r~~il~~~~~  294 (450)
T PRK00149        258 LPGLEERLRSRFE-WGLTVDIEPPDLETRIAILKKKAE  294 (450)
T ss_pred             HHHHHHHHHhHhc-CCeeEEecCCCHHHHHHHHHHHHH
Confidence                   122222 456899999999999999988763

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.97  E-value=5.2e-05  Score=84.67  Aligned_cols=152  Identities=14%  Similarity=0.126  Sum_probs=86.0

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~~~  396 (501)
                      +.++||+.++.++...|....  ...+.++|++|+|||++|..++.  ++...+      ...+|   .+    ++..++
T Consensus       173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~---~l----~~~~l~  241 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLL---AL----DMGALI  241 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEE---Ee----eHHHHh
Confidence            559999999999999996533  34566899999999999999887  433221      22233   11    111111


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHhc-C-CceEEEEEcCCCChh----------hHHHHHHhcCCCCCCCCCEEEEE
Q 010799          397 ADILRQLTQDEVDEESSLDDLESEFTGIL-Y-EKRYLVVLDDVHSPG----------AWYDLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlVlDnv~~~~----------~~~~l~~~l~~~~~~~~~~iIiT  464 (501)
                             .....  ....+..+..+...+ . +++.+|++|+++...          ..+.|.+.+..    ...++|-+
T Consensus       242 -------a~~~~--~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~----g~i~~Iga  308 (852)
T TIGR03346       242 -------AGAKY--RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR----GELHCIGA  308 (852)
T ss_pred             -------hcchh--hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc----CceEEEEe
Confidence                   01000  011222222222222 2 358999999987531          12233333222    23455555


Q ss_pred             eCChHHHh------hcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          465 TREAYVAR------SFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       465 tR~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      |.......      .+.+....+.++.++.++..+++...
T Consensus       309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~  348 (852)
T TIGR03346       309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL  348 (852)
T ss_pred             CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence            55444322      11124457889999999999988754

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>CHL00176 ftsH cell division protein; Validated

Probab=97.97  E-value=7e-05  Score=80.19  Aligned_cols=156  Identities=12%  Similarity=0.123  Sum_probs=89.1

Q ss_pred             ccceeecchhHHHHHHHh---hcC-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799          322 VTAVVSMENDILKLAKLT---LNS-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD  391 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L---~~~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~  391 (501)
                      ..++.|.++..+++.+.+   ...       ...++-+.++|++|+|||+||+.++.  ...     ..|  +.++..  
T Consensus       182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~--e~~-----~p~--i~is~s--  250 (638)
T CHL00176        182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG--EAE-----VPF--FSISGS--  250 (638)
T ss_pred             HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhC-----CCe--eeccHH--
Confidence            466888877776665554   221       12346799999999999999999988  332     223  333211  


Q ss_pred             hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------hh----HHHHHHhcCCCCC
Q 010799          392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------------GA----WYDLKRIFSPQAS  455 (501)
Q Consensus       392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~~----~~~l~~~l~~~~~  455 (501)
                        ++    ......      .....+...+.......+++|+||+++..            ..    +..++..+..+..
T Consensus       251 --~f----~~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~  318 (638)
T CHL00176        251 --EF----VEMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG  318 (638)
T ss_pred             --HH----HHHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence              11    111110      11223344455555667899999999642            11    2333333322112


Q ss_pred             CCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhhc
Q 010799          456 PIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       456 ~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      ..+..||.||.... +...+.+   ....+.++..+.++-.++|..++.
T Consensus       319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~  367 (638)
T CHL00176        319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR  367 (638)
T ss_pred             CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence            34556666665543 2222211   346889999999999998887653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.97  E-value=6.2e-05  Score=85.56  Aligned_cols=129  Identities=10%  Similarity=0.081  Sum_probs=79.4

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC-CCHHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE-LERRELVTDILKQ  210 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~-~~~~~l~~~i~~~  210 (501)
                      ...++-|..    |.+.|... .+.+++.|+|++|.|||||+.....      .++..+|+++... .+...++..++..
T Consensus        13 ~~~~~~R~r----l~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~------~~~~~~w~~l~~~d~~~~~f~~~l~~~   81 (903)
T PRK04841         13 LHNTVVRER----LLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAA------GKNNLGWYSLDESDNQPERFASYLIAA   81 (903)
T ss_pred             ccccCcchH----HHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHH------hCCCeEEEecCcccCCHHHHHHHHHHH
Confidence            345566654    44444432 3678999999999999999998773      2336899999644 4667777777777


Q ss_pred             hcCCCCc------------Ccch---HHHHHHHHcc--CCeEEEEEecCCCh---hHHHHHhhcCCCCCCCcEEEEEecc
Q 010799          211 VGGSKVE------------KQLD---PQKKLRKLFT--ENRYLVVIINARTP---DIWDILKYLFPNSSNGSRVILSFQE  270 (501)
Q Consensus       211 ~~~~~~~------------~~~~---~~~~l~~~l~--~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtr~  270 (501)
                      +......            ....   ....+...+.  +.+++|||||+...   ...+.+...++....+..+|||||.
T Consensus        82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~  161 (903)
T PRK04841         82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN  161 (903)
T ss_pred             HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            7421110            0011   1222323332  67899999998542   2223343334444456788899998


Q ss_pred             c
Q 010799          271 A  271 (501)
Q Consensus       271 ~  271 (501)
                      .
T Consensus       162 ~  162 (903)
T PRK04841        162 L  162 (903)
T ss_pred             C
Confidence            4

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=0.00011  Score=73.09  Aligned_cols=171  Identities=20%  Similarity=0.245  Sum_probs=109.2

Q ss_pred             ccceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~~  397 (501)
                      ....+||+.+++.+..++..  ..+..+.+-+.|-+|.|||.+...++.+  ......  ..+.  +++..-.....++.
T Consensus       149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~--~~~~~~~~~~v~--inc~sl~~~~aiF~  224 (529)
T KOG2227|consen  149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDS--LSKSSKSPVTVY--INCTSLTEASAIFK  224 (529)
T ss_pred             CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHh--hhhhcccceeEE--EeeccccchHHHHH
Confidence            35689999999999999854  3456688999999999999999988873  333332  3356  77777677888888


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcCC-c-eEEEEEcCCCChh--hHHHHHH--hcCCCCCCCCCEEEEEeCC----
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILYE-K-RYLVVLDDVHSPG--AWYDLKR--IFSPQASPIGSRVILITRE----  467 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~-r~LlVlDnv~~~~--~~~~l~~--~l~~~~~~~~~~iIiTtR~----  467 (501)
                      .|...+.......... .+....+..+... + .+|+|+|+++...  ....+..  .+|+   -+++++|+..--    
T Consensus       225 kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~---lp~sr~iLiGiANslD  300 (529)
T KOG2227|consen  225 KIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK---LPNSRIILIGIANSLD  300 (529)
T ss_pred             HHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc---CCcceeeeeeehhhhh
Confidence            8888873333221222 3344444444433 3 6899999998732  1122222  2333   445665554211    


Q ss_pred             ---hHHHhh---cCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799          468 ---AYVARS---FSPSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       468 ---~~~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                         +.+...   +.-....+..+|.+.++-.++|..++.
T Consensus       301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~  339 (529)
T KOG2227|consen  301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS  339 (529)
T ss_pred             HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence               111111   111356788999999999999998764

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.96  E-value=2.9e-05  Score=79.71  Aligned_cols=109  Identities=9%  Similarity=0.063  Sum_probs=64.1

Q ss_pred             ccccccchhhHHH---HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHH
Q 010799          132 KTGILDLNKEVNK---LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDIL  208 (501)
Q Consensus       132 ~~~~vg~~~~~~~---l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~  208 (501)
                      ..+++|.+..+..   |.+++...  ....+.++|.+|+||||||+.+.+..  ...     |+.++.......-++.++
T Consensus        11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir~ii   81 (413)
T PRK13342         11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLREVI   81 (413)
T ss_pred             HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHHHHH
Confidence            3568898877655   77777554  34567889999999999999998642  222     333332222111122222


Q ss_pred             HHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEE
Q 010799          209 KQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVIL  266 (501)
Q Consensus       209 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iiv  266 (501)
                      +.+..              ....+++.+|+||+++.  ....+.|...+..   |+.+++
T Consensus        82 ~~~~~--------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI  124 (413)
T PRK13342         82 EEARQ--------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI  124 (413)
T ss_pred             HHHHH--------------hhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence            22211              11246788999999975  3445566555542   555554

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=97.95  E-value=4.7e-05  Score=71.87  Aligned_cols=161  Identities=17%  Similarity=0.210  Sum_probs=95.0

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      .++++|.+....-|.+.+..  ...+....|||+|.|||+-|+.+++..--.+-|++.+-+ .+++...... +..    
T Consensus        35 ~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~-lnaSderGis-vvr----  106 (346)
T KOG0989|consen   35 FDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE-LNASDERGIS-VVR----  106 (346)
T ss_pred             HHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh-hccccccccc-chh----
Confidence            57799999999999999865  456899999999999999999988743333455543320 2232221111 000    


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcC--Cce-EEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILY--EKR-YLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFS  475 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~--~~r-~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~  475 (501)
                          .   ...+...+.........  ..+ -+||||+++.  .+.|..+...+..  .+..++-|+.+-.- .+...+.
T Consensus       107 ----~---Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~--~s~~trFiLIcnylsrii~pi~  177 (346)
T KOG0989|consen  107 ----E---KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED--FSRTTRFILICNYLSRIIRPLV  177 (346)
T ss_pred             ----h---hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc--cccceEEEEEcCChhhCChHHH
Confidence                0   00011111111110110  123 4789999997  6778999888888  67777755554332 2222222


Q ss_pred             CCCcceeCCCCChHHHHHHHHHhh
Q 010799          476 PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       476 ~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +.-.-+..++|.+++..+=+...+
T Consensus       178 SRC~KfrFk~L~d~~iv~rL~~Ia  201 (346)
T KOG0989|consen  178 SRCQKFRFKKLKDEDIVDRLEKIA  201 (346)
T ss_pred             hhHHHhcCCCcchHHHHHHHHHHH
Confidence            233477888898887776665543

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.95  E-value=1.6e-05  Score=78.30  Aligned_cols=47  Identities=15%  Similarity=0.036  Sum_probs=38.5

Q ss_pred             cccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+|+|+++.++.|..++...   ......+.++|++|+|||+||+.+.+.
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~   53 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE   53 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999988742   223556789999999999999999864

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.94  E-value=0.00074  Score=71.31  Aligned_cols=60  Identities=13%  Similarity=0.201  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +...-.+...+..++-||++|+--+   ......+...+... ...|..||++|.+......+.
T Consensus       401 q~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-~~~g~tviivsHd~~~~~~~~  463 (501)
T PRK11288        401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL-AAQGVAVLFVSSDLPEVLGVA  463 (501)
T ss_pred             HHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH-HhCCCEEEEECCCHHHHHhhC
Confidence            3444455555666788999999654   12222333222221 123678999999987666554

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.93  E-value=9e-05  Score=77.90  Aligned_cols=156  Identities=13%  Similarity=0.242  Sum_probs=88.2

Q ss_pred             cccee-ecchhHH--HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc--cceeEEEEeCCCCChHHHH
Q 010799          322 VTAVV-SMENDIL--KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP--CRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       322 ~~~fv-GR~~~~~--~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~--~~~w~~v~~~~~~~~~~~~  396 (501)
                      +++|+ |-...+.  .+.++..........+.|||..|+|||.|+..+++  .....+.  .+++  +++      .++.
T Consensus       287 FDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Y--ita------eef~  356 (617)
T PRK14086        287 FDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRY--VSS------EEFT  356 (617)
T ss_pred             HhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEE--eeH------HHHH
Confidence            56676 4444322  22333322222234589999999999999999998  4443332  2344  432      2333


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hh-HHHHHHhcCCCCCCCCCEEEEEeCCh----
Q 010799          397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GA-WYDLKRIFSPQASPIGSRVILITREA----  468 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~-~~~l~~~l~~~~~~~~~~iIiTtR~~----  468 (501)
                      .++...+...      .    ...+++.+.+ .=+|+|||++..   .. .+.|+..+... ...+..|||||...    
T Consensus       357 ~el~~al~~~------~----~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l-~e~gk~IIITSd~~P~eL  424 (617)
T PRK14086        357 NEFINSIRDG------K----GDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTL-HNANKQIVLSSDRPPKQL  424 (617)
T ss_pred             HHHHHHHHhc------c----HHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHH-HhcCCCEEEecCCChHhh
Confidence            3443333221      1    2223333332 347889999752   11 23344433331 23356788888753    


Q ss_pred             -----HHHhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799          469 -----YVARSFSPSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       469 -----~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                           .+...+. .+.++.+++++.+.-.+++++++.
T Consensus       425 ~~l~~rL~SRf~-~GLvv~I~~PD~EtR~aIL~kka~  460 (617)
T PRK14086        425 VTLEDRLRNRFE-WGLITDVQPPELETRIAILRKKAV  460 (617)
T ss_pred             hhccHHHHhhhh-cCceEEcCCCCHHHHHHHHHHHHH
Confidence                 1223333 678999999999999999998763

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.93  E-value=0.00013  Score=72.35  Aligned_cols=163  Identities=13%  Similarity=0.121  Sum_probs=94.1

Q ss_pred             cceee-cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          323 TAVVS-MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       323 ~~fvG-R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      .+++| -+..++.|...+.. +.-++...++|+.|+|||++|..+.+..-..+......+         ........+..
T Consensus         5 ~~i~~~q~~~~~~L~~~~~~-~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~c---------g~C~~c~~~~~   74 (329)
T PRK08058          5 EQLTALQPVVVKMLQNSIAK-NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPC---------GTCTNCKRIDS   74 (329)
T ss_pred             HHHHhhHHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC---------CcCHHHHHHhc
Confidence            34667 66677777777743 234467899999999999999998763211111110000         00001111110


Q ss_pred             HhccC-----CCCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799          402 QLTQD-----EVDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-Y  469 (501)
Q Consensus       402 ~l~~~-----~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~  469 (501)
                      .-.++     ........+++.+.+...    ..+.+-++|+|+++.  ....+.|+..+..  .+.++.+|++|.+. .
T Consensus        75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~  152 (329)
T PRK08058         75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE--PSGGTTAILLTENKHQ  152 (329)
T ss_pred             CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC--CCCCceEEEEeCChHh
Confidence            00000     000112233333332221    124456789999876  4557889998888  67788777777653 3


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHH
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                      +...+.+...++++.+++.++..+.+.+
T Consensus       153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~  180 (329)
T PRK08058        153 ILPTILSRCQVVEFRPLPPESLIQRLQE  180 (329)
T ss_pred             CcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence            4444444677999999999999887764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.92  E-value=0.00055  Score=72.09  Aligned_cols=58  Identities=14%  Similarity=0.121  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      -+...-.+...+..++-+++||+--+      ...+..+...+..    .|..||++|.+......+.
T Consensus       395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~----~~~tvi~vsHd~~~~~~~~  458 (491)
T PRK10982        395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK----KDKGIIIISSEMPELLGIT  458 (491)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH----CCCEEEEECCChHHHHhhC
Confidence            34444555556666778999999644      2222233333333    3678999999877665554

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.91  E-value=7.1e-05  Score=79.61  Aligned_cols=48  Identities=13%  Similarity=0.254  Sum_probs=39.9

Q ss_pred             cccceeecchhHHHHHHHhhcCC---CCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLNSS---DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~---~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++++|-++.++++..++....   ...+++.|+|++|+||||+++.++.
T Consensus        82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~  132 (637)
T TIGR00602        82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK  132 (637)
T ss_pred             CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35779999999999999985432   2336799999999999999999987

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.90  E-value=0.00021  Score=76.50  Aligned_cols=168  Identities=14%  Similarity=0.137  Sum_probs=95.6

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.+.....|..++..+. -.+.+.++|+.|+|||++|+.+++........ ...      ...+.....+..+.
T Consensus        14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~-~~~------~~~Cg~C~~C~~i~   85 (620)
T PRK14948         14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSD-KPT------PEPCGKCELCRAIA   85 (620)
T ss_pred             cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcC-CCC------CCCCcccHHHHHHh
Confidence            35679999999999999886532 23578899999999999999998743211110 000      01111122222232


Q ss_pred             HHhccCC----CCCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hH
Q 010799          401 RQLTQDE----VDEESSLDDLESEFTGI----LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AY  469 (501)
Q Consensus       401 ~~l~~~~----~~~~~~~~~~~~~l~~~----l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~  469 (501)
                      .....+.    .......+.+...+...    ..+++-++|||+++.  .+.++.|+..+..  ....+.+|++|.+ ..
T Consensus        86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe--Pp~~tvfIL~t~~~~~  163 (620)
T PRK14948         86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE--PPPRVVFVLATTDPQR  163 (620)
T ss_pred             cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc--CCcCeEEEEEeCChhh
Confidence            2211110    00111222222222111    123456889999986  4567888888887  4555655555543 33


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +...+.+....+++.+++.++....+.+.
T Consensus       164 llpTIrSRc~~~~f~~l~~~ei~~~L~~i  192 (620)
T PRK14948        164 VLPTIISRCQRFDFRRIPLEAMVQHLSEI  192 (620)
T ss_pred             hhHHHHhheeEEEecCCCHHHHHHHHHHH
Confidence            33333334567888899998887776653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.88  E-value=0.0001  Score=62.78  Aligned_cols=87  Identities=14%  Similarity=0.032  Sum_probs=46.6

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      ..+.|+|++|+||||+++.++.  ........+++  +..............  ........ ...........+.+...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~   75 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIY--IDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALAR   75 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEE--ECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHH
Confidence            5889999999999999999988  44433323444  443322221111111  11111111 12222333334444444


Q ss_pred             Cc-eEEEEEcCCCCh
Q 010799          427 EK-RYLVVLDDVHSP  440 (501)
Q Consensus       427 ~~-r~LlVlDnv~~~  440 (501)
                      .. ..+|++|++...
T Consensus        76 ~~~~~viiiDei~~~   90 (148)
T smart00382       76 KLKPDVLILDEITSL   90 (148)
T ss_pred             hcCCCEEEEECCccc
Confidence            43 489999999874

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00016  Score=74.13  Aligned_cols=155  Identities=14%  Similarity=0.177  Sum_probs=93.7

Q ss_pred             cccceeecchhHHHHHHHhhcC----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLNS----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...++-|.++.+.+|.+++..-          -..++-|.++||+|+|||.||+.++++  ..-.     |  +.++.+ 
T Consensus       188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vP-----f--~~isAp-  257 (802)
T KOG0733|consen  188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVP-----F--LSISAP-  257 (802)
T ss_pred             chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCc-----e--Eeecch-
Confidence            5688999999999998887431          134578999999999999999999993  3333     3  444322 


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--------hh-----HHHHHHhcCCCC-C-
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--------GA-----WYDLKRIFSPQA-S-  455 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--------~~-----~~~l~~~l~~~~-~-  455 (501)
                             ++.....      ..+.+.+...+.+....-+++++||+++-.        .+     ...|+..+.... . 
T Consensus       258 -------eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~  324 (802)
T KOG0733|consen  258 -------EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK  324 (802)
T ss_pred             -------hhhcccC------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence                   2222222      334566666666777778999999999861        11     122333222210 1 


Q ss_pred             CCCCEEEE---EeCChHHHhhcCC---CCcceeCCCCChHHHHHHHHHh
Q 010799          456 PIGSRVIL---ITREAYVARSFSP---SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       456 ~~~~~iIi---TtR~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      ..|-.|||   |+|-..+...+..   ..+-|.+.-.+...-.+++...
T Consensus       325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~  373 (802)
T KOG0733|consen  325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRII  373 (802)
T ss_pred             cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHH
Confidence            11333444   4554444333332   4567777777776666666544

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.86  E-value=3.4e-05  Score=65.44  Aligned_cols=96  Identities=19%  Similarity=0.231  Sum_probs=52.4

Q ss_pred             EEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC-
Q 010799          349 ISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYE-  427 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-  427 (501)
                      |.|+|++|+|||++|+.+++  ....+|   +.  ++.+...+              .  ........+.+.+.+.-.. 
T Consensus         1 ill~G~~G~GKT~l~~~la~--~l~~~~---~~--i~~~~~~~--------------~--~~~~~~~~i~~~~~~~~~~~   57 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ--YLGFPF---IE--IDGSELIS--------------S--YAGDSEQKIRDFFKKAKKSA   57 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH--HTTSEE---EE--EETTHHHT--------------S--STTHHHHHHHHHHHHHHHTS
T ss_pred             CEEECcCCCCeeHHHHHHHh--hccccc---cc--cccccccc--------------c--cccccccccccccccccccc
Confidence            57999999999999999999  333222   22  33321100              0  0111223333444443333 


Q ss_pred             ceEEEEEcCCCCh--hh-----------HHHHHHhcCCCC-CCCCCEEEEEeCC
Q 010799          428 KRYLVVLDDVHSP--GA-----------WYDLKRIFSPQA-SPIGSRVILITRE  467 (501)
Q Consensus       428 ~r~LlVlDnv~~~--~~-----------~~~l~~~l~~~~-~~~~~~iIiTtR~  467 (501)
                      ++.+|+|||++..  ..           ...+...+.... ...+..+|.||..
T Consensus        58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~  111 (132)
T PF00004_consen   58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS  111 (132)
T ss_dssp             TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred             cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence            3799999999862  11           345555555420 1134566767765

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.85  E-value=2.2e-05  Score=77.72  Aligned_cols=89  Identities=13%  Similarity=0.178  Sum_probs=59.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC--ChHHHHHHHHHHhccCCCCCCCCH------HHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF--DMRSVFADILRQLTQDEVDEESSL------DDLE  418 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~  418 (501)
                      ...+|+|++|+||||||+.++++.... +|+..+|  +.+....  ++.+++.++...+-.... +....      ....
T Consensus       170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~--VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~i  245 (416)
T PRK09376        170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLI--VLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVI  245 (416)
T ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEE--EEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHH
Confidence            578899999999999999999954333 8999999  8887766  677777777632222211 11111      1222


Q ss_pred             HHHHHhc-CCceEEEEEcCCCC
Q 010799          419 SEFTGIL-YEKRYLVVLDDVHS  439 (501)
Q Consensus       419 ~~l~~~l-~~~r~LlVlDnv~~  439 (501)
                      ..-..+. .++.+||++|++..
T Consensus       246 e~Ae~~~e~G~dVlL~iDsItR  267 (416)
T PRK09376        246 EKAKRLVEHGKDVVILLDSITR  267 (416)
T ss_pred             HHHHHHHHcCCCEEEEEEChHH
Confidence            2223322 46899999999864

>PRK08116 hypothetical protein; Validated

Probab=97.84  E-value=7.8e-05  Score=71.57  Aligned_cols=103  Identities=18%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      ..+.|+|.+|+|||.||..+++  ....+...+++  ++      ..+++..+.........   .+..+    +.+.+.
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~--~~------~~~ll~~i~~~~~~~~~---~~~~~----~~~~l~  177 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIF--VN------FPQLLNRIKSTYKSSGK---EDENE----IIRSLV  177 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEE--EE------HHHHHHHHHHHHhcccc---ccHHH----HHHHhc
Confidence            4689999999999999999999  44444334455  44      33444455444332211   12222    233333


Q ss_pred             CceEEEEEcCCCC--hhhH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          427 EKRYLVVLDDVHS--PGAW--YDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       427 ~~r~LlVlDnv~~--~~~~--~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                      +-. ||||||+..  ..+|  ..+...+... ...+..+||||...
T Consensus       178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r-~~~~~~~IiTsN~~  221 (268)
T PRK08116        178 NAD-LLILDDLGAERDTEWAREKVYNIIDSR-YRKGLPTIVTTNLS  221 (268)
T ss_pred             CCC-EEEEecccCCCCCHHHHHHHHHHHHHH-HHCCCCEEEECCCC
Confidence            333 899999942  2222  3344433331 23466788888753

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=97.84  E-value=0.00034  Score=69.12  Aligned_cols=143  Identities=14%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc-------cCCCCCCCCHHH
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT-------QDEVDEESSLDD  416 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~-------~~~~~~~~~~~~  416 (501)
                      .-++.+.++|+.|+|||++|..++...-.......         ..+.-....+.+...-.       ..........++
T Consensus        20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~---------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~   90 (328)
T PRK05707         20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG---------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ   90 (328)
T ss_pred             CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC---------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH
Confidence            34567889999999999999998774322111100         00000011111110000       000001122333


Q ss_pred             HHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCCCcceeCCCCCh
Q 010799          417 LESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPSIFLHQLRPLNE  488 (501)
Q Consensus       417 ~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~~~~~~l~~L~~  488 (501)
                      +.. +.+.+.     +.+-++|||+++.  ....+.|+..+-.  .+.++.+|+||.+. .+...+.+.-..+.+.+++.
T Consensus        91 iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~  167 (328)
T PRK05707         91 VRE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN  167 (328)
T ss_pred             HHH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH
Confidence            332 223222     2344557799986  5667888888888  66778888888775 34444444556899999999


Q ss_pred             HHHHHHHHHh
Q 010799          489 EESGKLFQRR  498 (501)
Q Consensus       489 ~ea~~Lf~~~  498 (501)
                      +++.+.+.+.
T Consensus       168 ~~~~~~L~~~  177 (328)
T PRK05707        168 EESLQWLQQA  177 (328)
T ss_pred             HHHHHHHHHh
Confidence            9999888764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.82  E-value=0.00057  Score=74.25  Aligned_cols=312  Identities=12%  Similarity=0.096  Sum_probs=0.0

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccccccceeEEE-------EcCCCC--------------------------------
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWV-------PVPEEL--------------------------------  198 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv-------~vs~~~--------------------------------  198 (501)
                      +++|+|..|+|||||.+.+.   .........+++       .+++..                                
T Consensus        31 ~v~LvG~NGsGKSTLLriia---G~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (635)
T PRK11147         31 RVCLVGRNGAGKSTLMKILN---GEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHL  107 (635)
T ss_pred             EEEEECCCCCCHHHHHHHHc---CCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHH


Q ss_pred             --------------------------CHHHHHHHHHHHhcCCCCcCcchH------HHHHHHHccCCeEEEEEecCCChh
Q 010799          199 --------------------------ERRELVTDILKQVGGSKVEKQLDP------QKKLRKLFTENRYLVVIINARTPD  246 (501)
Q Consensus       199 --------------------------~~~~l~~~i~~~~~~~~~~~~~~~------~~~l~~~l~~kr~LlVlDdv~~~~  246 (501)
                                                ....-...+++.++........++      .-.|...|-.+.=+|+||...+.-
T Consensus       108 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~L  187 (635)
T PRK11147        108 VETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHL  187 (635)
T ss_pred             hccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCcc


Q ss_pred             HH---HHHhhcCCCCCCCcEEEEEeccccchh--cccCCCCCCCcc--cCcceeeeccccCC------------------
Q 010799          247 IW---DILKYLFPNSSNGSRVILSFQEADAAR--CRNMSFFGGESS--FKPKYIAYAASEDD------------------  301 (501)
Q Consensus       247 ~~---~~l~~~~~~~~~gs~iivTtr~~~va~--~~~~~~l~~~~~--~~~~~~~~~~s~~~------------------  301 (501)
                      +.   ..+...+..-  +..||++|++...+.  |..+-.+.....  +.-.+..+......                  
T Consensus       188 D~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (635)
T PRK11147        188 DIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQ  265 (635)
T ss_pred             CHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             ------------------------------------CCCCCCCCCCCCCCccccccccceeecchhHHHHHHHhhcCCCC
Q 010799          302 ------------------------------------GGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDK  345 (501)
Q Consensus       302 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~fvGR~~~~~~l~~~L~~~~~~  345 (501)
                                                          ........+...+.....-+..++.-.-.. ..+.+-+.-.-..
T Consensus       266 ~~~~~~~~~~a~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~il~~vsl~i~~  344 (635)
T PRK11147        266 EEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAKMQVEEASRSGKIVFEMENVNYQIDG-KQLVKDFSAQVQR  344 (635)
T ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHhhhhhccccccCCceeEEeCCCCCCCCceEEEeeeEEEECC-eEEEcCcEEEEcC


Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEe---------------------CCCCCh-----HHHHHH
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYV---------------------SQDFDM-----RSVFAD  398 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~---------------------~~~~~~-----~~~~~~  398 (501)
                      -.+++|.|+.|+|||||.+.++.  .....-..+.| ..+.+                     ......     ..-...
T Consensus       345 Ge~~~l~G~NGsGKSTLlk~l~G--~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~  422 (635)
T PRK11147        345 GDKIALIGPNGCGKTTLLKLMLG--QLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLG  422 (635)
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC--CCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHH


Q ss_pred             HHHHhccCCCC------CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799          399 ILRQLTQDEVD------EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAY  469 (501)
Q Consensus       399 i~~~l~~~~~~------~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~  469 (501)
                      ++..+......      ..+.-+...-.+...+..++-+|+||+--+   ......+...+..  .  +..||++|.+..
T Consensus       423 ~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~--~~tvi~vSHd~~  498 (635)
T PRK11147        423 YLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS--Y--QGTVLLVSHDRQ  498 (635)
T ss_pred             HHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHh--C--CCeEEEEECCHH


Q ss_pred             HHhhcCCCCcceeC
Q 010799          470 VARSFSPSIFLHQL  483 (501)
Q Consensus       470 ~~~~~~~~~~~~~l  483 (501)
                      ....+.  ..++.+
T Consensus       499 ~~~~~~--d~i~~l  510 (635)
T PRK11147        499 FVDNTV--TECWIF  510 (635)
T ss_pred             HHHHhc--CEEEEE

>PRK12377 putative replication protein; Provisional

Probab=97.80  E-value=0.0001  Score=69.64  Aligned_cols=100  Identities=20%  Similarity=0.169  Sum_probs=55.8

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      ...+.|+|++|+|||.||..+++  ........+.+  +++      .+++..+.......     ....+.   + +.+
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~--i~~------~~l~~~l~~~~~~~-----~~~~~~---l-~~l  161 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIV--VTV------PDVMSRLHESYDNG-----QSGEKF---L-QEL  161 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEE--EEH------HHHHHHHHHHHhcc-----chHHHH---H-HHh
Confidence            46899999999999999999999  44444444556  443      23444443333211     111222   2 222


Q ss_pred             CCceEEEEEcCCCC----hhhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799          426 YEKRYLVVLDDVHS----PGAWYDLKRIFSPQASPIGSRVILITR  466 (501)
Q Consensus       426 ~~~r~LlVlDnv~~----~~~~~~l~~~l~~~~~~~~~~iIiTtR  466 (501)
                       .+.-||||||+..    ....+.|...+... ......+||||-
T Consensus       162 -~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R-~~~~~ptiitSN  204 (248)
T PRK12377        162 -CKVDLLVLDEIGIQRETKNEQVVLNQIIDRR-TASMRSVGMLTN  204 (248)
T ss_pred             -cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH-HhcCCCEEEEcC
Confidence             3456999999943    12233444444431 233445677765

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.78  E-value=0.0003  Score=72.99  Aligned_cols=153  Identities=14%  Similarity=0.063  Sum_probs=84.8

Q ss_pred             ccceeecchhHHHHHHHh---hc-----CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH
Q 010799          322 VTAVVSMENDILKLAKLT---LN-----SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR  393 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L---~~-----~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~  393 (501)
                      ..++.|.+...+.+....   ..     +-..++-+.++|++|+|||.+|+.+++  ...-.|   +-  ++++.     
T Consensus       227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~--l~~~~-----  294 (489)
T CHL00195        227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LR--LDVGK-----  294 (489)
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--EEhHH-----
Confidence            466788776666555421   10     123457899999999999999999988  333222   11  22211     


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh--------------hHHHHHHhcCCCCCCCCC
Q 010799          394 SVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG--------------AWYDLKRIFSPQASPIGS  459 (501)
Q Consensus       394 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~--------------~~~~l~~~l~~~~~~~~~  459 (501)
                           +..    ...  ..+...+.+.+...-...+++|+||+++...              .+..++..+..  ...+.
T Consensus       295 -----l~~----~~v--Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V  361 (489)
T CHL00195        295 -----LFG----GIV--GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPV  361 (489)
T ss_pred             -----hcc----ccc--ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCce
Confidence                 110    000  1122233333333334568999999997410              11223333333  23344


Q ss_pred             EEEEEeCChH-HHhhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          460 RVILITREAY-VARSF---SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       460 ~iIiTtR~~~-~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      -||.||.+.. +...+   +.....+.++..+.++-.++|..++
T Consensus       362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l  405 (489)
T CHL00195        362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHL  405 (489)
T ss_pred             EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence            4555665443 22222   1245688999999999999998765

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.77  E-value=0.00016  Score=72.37  Aligned_cols=133  Identities=17%  Similarity=0.259  Sum_probs=86.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI  424 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~  424 (501)
                      ....+.|||+.|.|||.|+..+++  ...........  +++..    ......+...+...          -.+.+++.
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v--~y~~s----e~f~~~~v~a~~~~----------~~~~Fk~~  173 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARV--VYLTS----EDFTNDFVKALRDN----------EMEKFKEK  173 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceE--EeccH----HHHHHHHHHHHHhh----------hHHHHHHh
Confidence            457899999999999999999999  66666654333  44432    23333333333321          24556666


Q ss_pred             cCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh---------HHHhhcCCCCcceeCCCCChHHH
Q 010799          425 LYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA---------YVARSFSPSIFLHQLRPLNEEES  491 (501)
Q Consensus       425 l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~---------~~~~~~~~~~~~~~l~~L~~~ea  491 (501)
                      .  .-=++++||++-.    ...+++...+... ...|-.||+|++..         .+...+. .+.++++.+++.+..
T Consensus       174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l-~~~~kqIvltsdr~P~~l~~~~~rL~SR~~-~Gl~~~I~~Pd~e~r  249 (408)
T COG0593         174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNAL-LENGKQIVLTSDRPPKELNGLEDRLRSRLE-WGLVVEIEPPDDETR  249 (408)
T ss_pred             h--ccCeeeechHhHhcCChhHHHHHHHHHHHH-HhcCCEEEEEcCCCchhhccccHHHHHHHh-ceeEEeeCCCCHHHH
Confidence            5  3348889998752    2244555544442 23355899998532         2334444 678999999999999


Q ss_pred             HHHHHHhh
Q 010799          492 GKLFQRRL  499 (501)
Q Consensus       492 ~~Lf~~~~  499 (501)
                      ...+++++
T Consensus       250 ~aiL~kka  257 (408)
T COG0593         250 LAILRKKA  257 (408)
T ss_pred             HHHHHHHH
Confidence            99998865

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.77  E-value=7.4e-05  Score=74.29  Aligned_cols=49  Identities=14%  Similarity=-0.046  Sum_probs=39.9

Q ss_pred             ccccccchhhHHHHHHHHhc---CCCCeeEEEEEeeCChhhHHHHhhhhccc
Q 010799          132 KTGILDLNKEVNKLADFLIR---SHSSLFTISVVDVAGSVMTTDLWKSYECE  180 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~---~~~~~~vi~I~G~~GvGKTtLa~~v~~~~  180 (501)
                      ..+|+|+++.++.+..++..   .......+-++|++|+||||||+.+.+..
T Consensus        24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l   75 (328)
T PRK00080         24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM   75 (328)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence            46799999999999888863   23345677899999999999999998643

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.77  E-value=0.00027  Score=62.48  Aligned_cols=147  Identities=19%  Similarity=0.210  Sum_probs=77.9

Q ss_pred             ecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccC
Q 010799          327 SMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQD  406 (501)
Q Consensus       327 GR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~  406 (501)
                      |-++..+.|...+.. +.-+..+.++|+.|+||+++|..+++..--......          .+........+...-..+
T Consensus         1 gq~~~~~~L~~~~~~-~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----------~c~~c~~c~~~~~~~~~d   69 (162)
T PF13177_consen    1 GQEEIIELLKNLIKS-GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----------PCGECRSCRRIEEGNHPD   69 (162)
T ss_dssp             S-HHHHHHHHHHHHC-TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------------SSSHHHHHHHTT-CTT
T ss_pred             CcHHHHHHHHHHHHc-CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----------CCCCCHHHHHHHhccCcc
Confidence            445667777777744 234467899999999999999998773211111100          000001111111100000


Q ss_pred             C----CC---CCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HH
Q 010799          407 E----VD---EESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VA  471 (501)
Q Consensus       407 ~----~~---~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~  471 (501)
                      .    ..   .....+++. .+.+++.     +..-++||||++.  .+.++.|+..+-.  .+.++.+|++|.+.. +.
T Consensus        70 ~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe--pp~~~~fiL~t~~~~~il  146 (162)
T PF13177_consen   70 FIIIKPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE--PPENTYFILITNNPSKIL  146 (162)
T ss_dssp             EEEEETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS--TTTTEEEEEEES-GGGS-
T ss_pred             eEEEecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC--CCCCEEEEEEECChHHCh
Confidence            0    00   011233333 4444443     2466899999986  5778889998888  778899888888764 44


Q ss_pred             hhcCCCCcceeCCCCC
Q 010799          472 RSFSPSIFLHQLRPLN  487 (501)
Q Consensus       472 ~~~~~~~~~~~l~~L~  487 (501)
                      ..+.+.-..+.+++||
T Consensus       147 ~TI~SRc~~i~~~~ls  162 (162)
T PF13177_consen  147 PTIRSRCQVIRFRPLS  162 (162)
T ss_dssp             HHHHTTSEEEEE----
T ss_pred             HHHHhhceEEecCCCC
Confidence            4444455677777664

...

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=97.76  E-value=0.0011  Score=67.43  Aligned_cols=139  Identities=16%  Similarity=0.162  Sum_probs=73.2

Q ss_pred             eecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc-----cc----CCc---cceeEEEEe-------
Q 010799          326 VSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT-----KK----NFP---CRAWANVYV-------  386 (501)
Q Consensus       326 vGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~-----~~----~f~---~~~w~~v~~-------  386 (501)
                      +|-++.. .+..-|..+-+.-..|+++|+.|+|||||.+.++.+..-     +.    +|.   ...-+....       
T Consensus       397 F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~  475 (614)
T KOG0927|consen  397 FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF  475 (614)
T ss_pred             cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Confidence            3444444 333333333233368999999999999999888775321     11    111   000000000       


Q ss_pred             ----CCCCChHHHHHHHHHHhccCCCCCC------CCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCC
Q 010799          387 ----SQDFDMRSVFADILRQLTQDEVDEE------SSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQ  453 (501)
Q Consensus       387 ----~~~~~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~  453 (501)
                          -.+....+..+.++..++.....+.      ++-+...=.+....-..+.||+||+--+   .+..+.+..++.. 
T Consensus       476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe-  554 (614)
T KOG0927|consen  476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE-  554 (614)
T ss_pred             HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc-
Confidence                0111234455666666666544322      2223333334444446788999999765   3556667777776 


Q ss_pred             CCCCCCEEEEEeCChH
Q 010799          454 ASPIGSRVILITREAY  469 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~  469 (501)
                        -+|+ +|++|.+-.
T Consensus       555 --~~Gg-vv~vSHDfr  567 (614)
T KOG0927|consen  555 --FPGG-VVLVSHDFR  567 (614)
T ss_pred             --cCCc-eeeeechhh
Confidence              3444 566665543

>PRK08181 transposase; Validated

Probab=97.75  E-value=0.00014  Score=69.52  Aligned_cols=99  Identities=16%  Similarity=0.118  Sum_probs=55.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      ..+.|+|++|+|||.||..+++  ........+.|  ++      ..+++..+.....      ..+.......+.    
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f--~~------~~~L~~~l~~a~~------~~~~~~~l~~l~----  166 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLF--TR------TTDLVQKLQVARR------ELQLESAIAKLD----  166 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceee--ee------HHHHHHHHHHHHh------CCcHHHHHHHHh----
Confidence            5699999999999999999988  44444344455  43      2344444433221      112222222221    


Q ss_pred             CceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          427 EKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       427 ~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                       +.-||||||+...    .....+...+..  .-.+..+||||...
T Consensus       167 -~~dLLIIDDlg~~~~~~~~~~~Lf~lin~--R~~~~s~IiTSN~~  209 (269)
T PRK08181        167 -KFDLLILDDLAYVTKDQAETSVLFELISA--RYERRSILITANQP  209 (269)
T ss_pred             -cCCEEEEeccccccCCHHHHHHHHHHHHH--HHhCCCEEEEcCCC
Confidence             2349999999642    222344444443  22234688887653

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.75  E-value=0.0002  Score=76.54  Aligned_cols=133  Identities=8%  Similarity=-0.042  Sum_probs=71.6

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV  211 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~  211 (501)
                      ..+++|.+..++.|.+++..+.- .+.+-++|..|+||||+|+.+.+.-.-...++       +..|..-...+.|...-
T Consensus        15 FdEVIGQe~Vv~~L~~aL~~gRL-~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~   86 (830)
T PRK07003         15 FASLVGQEHVVRALTHALDGGRL-HHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGR   86 (830)
T ss_pred             HHHHcCcHHHHHHHHHHHhcCCC-CeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCC
Confidence            46799999999999999976532 34456999999999999987764221111110       01111111111111100


Q ss_pred             c-----CCC--CcCcchHHHHHHHH----ccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799          212 G-----GSK--VEKQLDPQKKLRKL----FTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEAD  272 (501)
Q Consensus       212 ~-----~~~--~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~~  272 (501)
                      .     .+.  ....+++.+.+...    ..++.-++|||++..  ...|+.|+..+..-....++|+||.+.+
T Consensus        87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~  160 (830)
T PRK07003         87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ  160 (830)
T ss_pred             CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence            0     000  00001111111111    124555888999964  4558877777665556788887776543

>TIGR00767 rho transcription termination factor Rho

Probab=97.75  E-value=4.6e-05  Score=75.79  Aligned_cols=90  Identities=13%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CChHHHHHHHHHHhccCCCCCCCCH-----HHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FDMRSVFADILRQLTQDEVDEESSL-----DDLES  419 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~  419 (501)
                      ..++|+|++|+|||||++.+++.... ++|+..+|  +.+...  .++.++++.++..+-..........     ....+
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~--VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e  245 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELI--VLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE  245 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEE--EEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence            58999999999999999999984322 36888889  888655  6888888888544333322111111     11222


Q ss_pred             HHHHhc-CCceEEEEEcCCCC
Q 010799          420 EFTGIL-YEKRYLVVLDDVHS  439 (501)
Q Consensus       420 ~l~~~l-~~~r~LlVlDnv~~  439 (501)
                      ...++. .+++++|++|++..
T Consensus       246 ~Ae~~~~~GkdVVLlIDEitR  266 (415)
T TIGR00767       246 KAKRLVEHKKDVVILLDSITR  266 (415)
T ss_pred             HHHHHHHcCCCeEEEEEChhH
Confidence            222222 46899999999875

Members of this family differ in the specificity of RNA binding.

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=97.71  E-value=8.5e-05  Score=71.54  Aligned_cols=120  Identities=15%  Similarity=0.169  Sum_probs=70.9

Q ss_pred             cccccchhhHHH--HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 010799          133 TGILDLNKEVNK--LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       133 ~~~vg~~~~~~~--l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      .+.||.+.-+.+  ++.-+.+. ..+.-+-.||.+|+||||||+.+.+..+-..    ..||..|-...-..=++.|+++
T Consensus       138 ~dyvGQ~hlv~q~gllrs~ieq-~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~  212 (554)
T KOG2028|consen  138 DDYVGQSHLVGQDGLLRSLIEQ-NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ  212 (554)
T ss_pred             HHhcchhhhcCcchHHHHHHHc-CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence            445555544332  22222222 2577778999999999999999997655433    4566666543333333444443


Q ss_pred             hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEE--Eeccccc
Q 010799          211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVIL--SFQEADA  273 (501)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iiv--Ttr~~~v  273 (501)
                      ...             ...+.++|-.|.+|.|..  ..+-   -..+|.-.+|+-++|  ||.|.+.
T Consensus       213 aq~-------------~~~l~krkTilFiDEiHRFNksQQ---D~fLP~VE~G~I~lIGATTENPSF  263 (554)
T KOG2028|consen  213 AQN-------------EKSLTKRKTILFIDEIHRFNKSQQ---DTFLPHVENGDITLIGATTENPSF  263 (554)
T ss_pred             HHH-------------HHhhhcceeEEEeHHhhhhhhhhh---hcccceeccCceEEEecccCCCcc
Confidence            221             123457888999999852  2222   244666677886664  6766653

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.71  E-value=0.00028  Score=66.08  Aligned_cols=129  Identities=15%  Similarity=0.090  Sum_probs=72.5

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCCCChHHHHHHHHHHhccCC
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQDFDMRSVFADILRQLTQDE  407 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~  407 (501)
                      .|.++|..+=..-.++.|+|++|+|||+||..++.  ......      ..++|  +.....++...+ .++........
T Consensus         7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~--~~~~~~~~~g~~~~v~y--i~~e~~~~~~rl-~~~~~~~~~~~   81 (226)
T cd01393           7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAV--EAQLPGELGGLEGKVVY--IDTEGAFRPERL-VQLAVRFGLDP   81 (226)
T ss_pred             HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHH--HhhcccccCCCcceEEE--EecCCCCCHHHH-HHHHHHhccch
Confidence            34444533334557999999999999999999876  322222      45677  777665554443 33333322110


Q ss_pred             C--------CCCCCHHHHHHHHHHhcC---C-ceEEEEEcCCCCh---------------hhHHHHHHhcCCCCCCCCCE
Q 010799          408 V--------DEESSLDDLESEFTGILY---E-KRYLVVLDDVHSP---------------GAWYDLKRIFSPQASPIGSR  460 (501)
Q Consensus       408 ~--------~~~~~~~~~~~~l~~~l~---~-~r~LlVlDnv~~~---------------~~~~~l~~~l~~~~~~~~~~  460 (501)
                      .        ....+.+++...+.+...   . +.-|+|+|.+...               ..+..+...|.......++.
T Consensus        82 ~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~  161 (226)
T cd01393          82 EEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVA  161 (226)
T ss_pred             hhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcE
Confidence            0        023455666666665543   3 4569999998541               11222222233211246888


Q ss_pred             EEEEeCC
Q 010799          461 VILITRE  467 (501)
Q Consensus       461 iIiTtR~  467 (501)
                      ||+|+..
T Consensus       162 vi~tnq~  168 (226)
T cd01393         162 VVFTNQV  168 (226)
T ss_pred             EEEEEEE
Confidence            9998753

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>TIGR00763 lon ATP-dependent protease La

Probab=97.70  E-value=0.00031  Score=77.78  Aligned_cols=160  Identities=14%  Similarity=0.157  Sum_probs=86.5

Q ss_pred             cceeecchhHHHHHHHhh----cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTL----NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~----~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .+++|.++..+++.+++.    .+..+.+++.++|++|+|||++|+.+++  .....|-.     ++++...+..++   
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~~-----i~~~~~~~~~~i---  389 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFVR-----FSLGGVRDEAEI---  389 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeEE-----EeCCCcccHHHH---
Confidence            458899999999887663    2223446899999999999999999998  44444422     333332232221   


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh------hHHHHHHhcC--------C-C---CCC-CCC
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG------AWYDLKRIFS--------P-Q---ASP-IGS  459 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~------~~~~l~~~l~--------~-~---~~~-~~~  459 (501)
                       ... ....  .......+.+.+..... +.-+|+||+++...      ....|+..+.        + +   ... .+.
T Consensus       390 -~g~-~~~~--~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v  464 (775)
T TIGR00763       390 -RGH-RRTY--VGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV  464 (775)
T ss_pred             -cCC-CCce--eCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence             110 0000  11122333444444333 33478899987631      1233333221        1 0   000 123


Q ss_pred             EEEEEeCChH--HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          460 RVILITREAY--VARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       460 ~iIiTtR~~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                       ++|+|.|..  +...+-+...++++++++.++-.+++.+.
T Consensus       465 -~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~  504 (775)
T TIGR00763       465 -IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY  504 (775)
T ss_pred             -EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence             334444432  22222224468999999999988887654

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.70  E-value=0.00013  Score=73.74  Aligned_cols=108  Identities=16%  Similarity=0.129  Sum_probs=68.9

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+.++.++.++.+...|..    .+.+.++|++|+|||++|+.+++.......|..+.|  +.+....+..+.+..+. 
T Consensus       174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~--VtFHpsySYeDFI~G~r-  246 (459)
T PRK11331        174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNM--VQFHQSYSYEDFIQGYR-  246 (459)
T ss_pred             hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeE--EeecccccHHHHhcccC-
Confidence            35678889999999998853    257888999999999999999885433446677778  88877776665543221 


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHS  439 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~  439 (501)
                         ...........-..+.+.....  +++++||+|+++.
T Consensus       247 ---P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR  283 (459)
T PRK11331        247 ---PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR  283 (459)
T ss_pred             ---CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence               1110000000011222222222  3679999999976

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=97.69  E-value=0.00053  Score=68.01  Aligned_cols=145  Identities=17%  Similarity=0.196  Sum_probs=85.6

Q ss_pred             eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-------------------ccceeEEEE
Q 010799          325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-------------------PCRAWANVY  385 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-------------------~~~~w~~v~  385 (501)
                      ++|-+....++..+.......++.+.++|++|+|||++|..++++.--....                   ..+..  ++
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le--l~   80 (325)
T COG0470           3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE--LN   80 (325)
T ss_pred             cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE--ec
Confidence            6777888888888886544444569999999999999999988743111110                   11111  22


Q ss_pred             eCCCCC---hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCE
Q 010799          386 VSQDFD---MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSR  460 (501)
Q Consensus       386 ~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~  460 (501)
                      .+....   ..+..+++.........                 .+..-++++|+++.  .+..+.+...+..  ....+.
T Consensus        81 ~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe--p~~~~~  141 (325)
T COG0470          81 PSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE--PPKNTR  141 (325)
T ss_pred             ccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc--CCCCeE
Confidence            222222   12222222222221110                 24567899999987  4556788888877  677888


Q ss_pred             EEEEeCCh-HHHhhcCCCCcceeCCCCChHH
Q 010799          461 VILITREA-YVARSFSPSIFLHQLRPLNEEE  490 (501)
Q Consensus       461 iIiTtR~~-~~~~~~~~~~~~~~l~~L~~~e  490 (501)
                      +|++|.+. .+...+.+.-..+++.+.+..+
T Consensus       142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~~  172 (325)
T COG0470         142 FILITNDPSKILPTIRSRCQRIRFKPPSRLE  172 (325)
T ss_pred             EEEEcCChhhccchhhhcceeeecCCchHHH
Confidence            88888743 3444343345577776644433

>PRK06526 transposase; Provisional

Probab=97.69  E-value=9.8e-05  Score=70.17  Aligned_cols=100  Identities=15%  Similarity=0.126  Sum_probs=52.8

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      ...+.|+|++|+|||+||..+..  .....-..+.|  +      +..+++..+......      ..   ....+..+ 
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~--~a~~~g~~v~f--~------t~~~l~~~l~~~~~~------~~---~~~~l~~l-  157 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGI--RACQAGHRVLF--A------TAAQWVARLAAAHHA------GR---LQAELVKL-  157 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHH--HHHHCCCchhh--h------hHHHHHHHHHHHHhc------Cc---HHHHHHHh-
Confidence            35799999999999999999887  33322223344  2      223344444322111      11   12233332 


Q ss_pred             CCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          426 YEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       426 ~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                       .+.-||||||+...    ...+.+...+... ...+ .+|+||...
T Consensus       158 -~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r-~~~~-s~IitSn~~  201 (254)
T PRK06526        158 -GRYPLLIVDEVGYIPFEPEAANLFFQLVSSR-YERA-SLIVTSNKP  201 (254)
T ss_pred             -ccCCEEEEcccccCCCCHHHHHHHHHHHHHH-HhcC-CEEEEcCCC
Confidence             23458999999752    2222344433321 1223 478887653

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00023  Score=74.32  Aligned_cols=159  Identities=16%  Similarity=0.158  Sum_probs=95.1

Q ss_pred             cceeecchhHHHHHHHhh----cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTL----NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~----~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      ++=+|.++..+++.++|.    .++.+-.+++++||+|||||.+|+.++.  .....|..     ++++.-.+..++-  
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR-----fSvGG~tDvAeIk--  481 (906)
T KOG2004|consen  411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR-----FSVGGMTDVAEIK--  481 (906)
T ss_pred             ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE-----EeccccccHHhhc--
Confidence            456899999999999883    3445568999999999999999999999  66666644     6666666655431  


Q ss_pred             HHHHhccCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------------hhHHHHHHhcCCCCCCCCC
Q 010799          399 ILRQLTQDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHSP------------------GAWYDLKRIFSPQASPIGS  459 (501)
Q Consensus       399 i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------------~~~~~l~~~l~~~~~~~~~  459 (501)
                            +...- -..-+..+++.++..-. ..-|+.||+++..                  ++-..|.+.+.+. .-.=|
T Consensus       482 ------GHRRTYVGAMPGkiIq~LK~v~t-~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdV-p~DLS  553 (906)
T KOG2004|consen  482 ------GHRRTYVGAMPGKIIQCLKKVKT-ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDV-PVDLS  553 (906)
T ss_pred             ------ccceeeeccCChHHHHHHHhhCC-CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccc-ccchh
Confidence                  11100 01123345555555433 3457778888751                  1112233333331 11235


Q ss_pred             EEEEEeCChHHHhhcCC---CCcceeCCCCChHHHHHHHHHh
Q 010799          460 RVILITREAYVARSFSP---SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       460 ~iIiTtR~~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +|++...-..+..-.++   ...+|+|.+...+|-.++-.++
T Consensus       554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~y  595 (906)
T KOG2004|consen  554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERY  595 (906)
T ss_pred             heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHh
Confidence            66664332222211111   4568999999988877665544

>PRK03003 GTP-binding protein Der; Reviewed

Probab=97.68  E-value=0.00049  Score=71.94  Aligned_cols=43  Identities=12%  Similarity=0.150  Sum_probs=29.8

Q ss_pred             ecchhHHHHHHHhhcC------CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          327 SMENDILKLAKLTLNS------SDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       327 GR~~~~~~l~~~L~~~------~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      |-++-++.+.+.+...      ......|+|.|.+|+|||+|...+...
T Consensus       186 gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~  234 (472)
T PRK03003        186 GVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGE  234 (472)
T ss_pred             CcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence            4445555555544221      123578999999999999999998874

>PRK04195 replication factor C large subunit; Provisional

Probab=97.68  E-value=0.00018  Score=75.43  Aligned_cols=118  Identities=10%  Similarity=0.080  Sum_probs=69.7

Q ss_pred             ccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILK  209 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~  209 (501)
                      ..+++|.++.++.|.+|+..-  +...+.+-|+|++|+||||+|+.+.+...    |+.. -+..+...+. ..+..++.
T Consensus        13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~i-elnasd~r~~-~~i~~~i~   86 (482)
T PRK04195         13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEVI-ELNASDQRTA-DVIERVAG   86 (482)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCEE-EEcccccccH-HHHHHHHH
Confidence            467999999999999999742  22267889999999999999999986432    2222 2233332222 22333332


Q ss_pred             HhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCCh------hHHHHHhhcCCCCCCCcEEEEEec
Q 010799          210 QVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTP------DIWDILKYLFPNSSNGSRVILSFQ  269 (501)
Q Consensus       210 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~iivTtr  269 (501)
                      ......            .....++-+||||++...      ..+..+...+..  .++.||+|+.
T Consensus        87 ~~~~~~------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n  138 (482)
T PRK04195         87 EAATSG------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAN  138 (482)
T ss_pred             HhhccC------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEecc
Confidence            221110            001136779999998753      224555544432  2345666664

>COG3903 Predicted ATPase [General function prediction only]

Probab=97.67  E-value=2.3e-05  Score=77.05  Aligned_cols=140  Identities=21%  Similarity=0.200  Sum_probs=101.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCc-cceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFP-CRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG  423 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~-~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~  423 (501)
                      ..+.++++|+||||||+++..+..   +...|. .+.+  +.+....+...+.-.....+.....    +-+.....+..
T Consensus        13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~--vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~   83 (414)
T COG3903          13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAF--VDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVR   83 (414)
T ss_pred             hhheeeeeccCccceehhhhhhHh---Hhhhcccceee--eeccccCchhHhHHHHHhhcccccc----cchHHHHHHHH
Confidence            348999999999999999998766   455564 4556  7777777777777777776666543    23445678888


Q ss_pred             hcCCceEEEEEcCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCCCCcceeCCCCChH-HHHHHHHHhh
Q 010799          424 ILYEKRYLVVLDDVHSP-GAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRPLNEE-ESGKLFQRRL  499 (501)
Q Consensus       424 ~l~~~r~LlVlDnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~  499 (501)
                      .+.+++.++++||+.+. +....+...+..  +.+.-+|+.|+|+.....    ......+++|+.. ++.++|..++
T Consensus        84 ~~~~rr~llvldncehl~~~~a~~i~all~--~~~~~~~~atsre~~l~~----ge~~~~~~~L~~~d~a~~lf~~ra  155 (414)
T COG3903          84 RIGDRRALLVLDNCEHLLDACAALIVALLG--ACPRLAILATSREAILVA----GEVHRRVPSLSLFDEAIELFVCRA  155 (414)
T ss_pred             HHhhhhHHHHhcCcHHHHHHHHHHHHHHHc--cchhhhhHHHhHhhhccc----ccccccCCccccCCchhHHHHHHH
Confidence            88999999999999874 333334444555  566678899999765332    4667888888876 7888887665

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00028  Score=70.62  Aligned_cols=110  Identities=17%  Similarity=0.237  Sum_probs=79.6

Q ss_pred             cccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccccccc-e-eEEEEcCCCCCHHHHHHHHH
Q 010799          133 TGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-C-RAWVPVPEELERRELVTDIL  208 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~-~~wv~vs~~~~~~~l~~~i~  208 (501)
                      ..+.+|+.+.+++...|..-  +....-+-|+|.+|+|||+.++.+..  ++++... . .+.|..-.......++..|+
T Consensus        17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~   94 (366)
T COG1474          17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL   94 (366)
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence            44889999999999988742  22223388899999999999999995  3433321 1 56666667778899999999


Q ss_pred             HHhcCCCC--cCcchHHHHHHHHcc--CCeEEEEEecCCC
Q 010799          209 KQVGGSKV--EKQLDPQKKLRKLFT--ENRYLVVIINART  244 (501)
Q Consensus       209 ~~~~~~~~--~~~~~~~~~l~~~l~--~kr~LlVlDdv~~  244 (501)
                      ++++....  ....+....+.+.+.  ++.+++|||++..
T Consensus        95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~  134 (366)
T COG1474          95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDA  134 (366)
T ss_pred             HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence            99973322  233455677777774  4788999999864

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.67  E-value=0.00017  Score=76.05  Aligned_cols=22  Identities=36%  Similarity=0.748  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.++.
T Consensus       279 e~~~liG~NGsGKSTLl~~l~G  300 (501)
T PRK10762        279 EILGVSGLMGAGRTELMKVLYG  300 (501)
T ss_pred             cEEEEecCCCCCHHHHHHHHhC
Confidence            5899999999999999999875

>PRK06893 DNA replication initiation factor; Validated

Probab=97.65  E-value=0.00014  Score=68.24  Aligned_cols=94  Identities=11%  Similarity=0.120  Sum_probs=53.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY  235 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~  235 (501)
                      .+.+-++|.+|+|||+|++.+.+..  ........++.+...   .....                   .+.+.++ +.-
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~-------------------~~~~~~~-~~d   93 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSP-------------------AVLENLE-QQD   93 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhH-------------------HHHhhcc-cCC
Confidence            3568899999999999999999642  222234456655311   00001                   1111222 224


Q ss_pred             EEEEecCCC---hhHHHH-HhhcCCCC-CCCcEEEEEeccccch
Q 010799          236 LVVIINART---PDIWDI-LKYLFPNS-SNGSRVILSFQEADAA  274 (501)
Q Consensus       236 LlVlDdv~~---~~~~~~-l~~~~~~~-~~gs~iivTtr~~~va  274 (501)
                      +|+|||+|.   ...|+. +...+... ..|+.+||+|.+....
T Consensus        94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~  137 (229)
T PRK06893         94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH  137 (229)
T ss_pred             EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence            899999986   345653 33333222 2466777777666544

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00047  Score=72.34  Aligned_cols=158  Identities=15%  Similarity=0.162  Sum_probs=91.1

Q ss_pred             ceeecchhHHHHHHHhh----cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          324 AVVSMENDILKLAKLTL----NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~----~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      +=+|.++..+++.+.|.    ...-+-++++++||||+|||.|++.++.  .....|-.     ++++...+..++    
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR-----~sLGGvrDEAEI----  392 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR-----ISLGGVRDEAEI----  392 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE-----EecCccccHHHh----
Confidence            45789999999998883    2233447999999999999999999999  66777733     444544443332    


Q ss_pred             HHHhccCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhc------------CCCCCCCCCE
Q 010799          400 LRQLTQDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIF------------SPQASPIGSR  460 (501)
Q Consensus       400 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l------------~~~~~~~~~~  460 (501)
                          .+...- -..-+..+++.++..- .+.-|++||+++..      +-..+++..|            ...+..- |.
T Consensus       393 ----RGHRRTYIGamPGrIiQ~mkka~-~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~  466 (782)
T COG0466         393 ----RGHRRTYIGAMPGKIIQGMKKAG-VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SK  466 (782)
T ss_pred             ----ccccccccccCChHHHHHHHHhC-CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch-hh
Confidence                111110 0112234455555442 34568889998751      1112222222            1111111 33


Q ss_pred             E-EEEeCChH--HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          461 V-ILITREAY--VARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       461 i-IiTtR~~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      | .|||-|..  +...+--...++++.+.+.+|-.+.-.++
T Consensus       467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~  507 (782)
T COG0466         467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRH  507 (782)
T ss_pred             eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHh
Confidence            4 44554432  22211115679999999999988776654

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.63  E-value=0.00038  Score=76.56  Aligned_cols=162  Identities=16%  Similarity=0.171  Sum_probs=90.6

Q ss_pred             cceeecchhHHHHHHHhhc----CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLN----SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~----~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .+.+|.++..+++.+++..    ......+++++|++|+|||++|+.++.  .....|..     ++++...+...+...
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~-----i~~~~~~d~~~i~g~  394 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR-----MALGGVRDEAEIRGH  394 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE-----EEcCCCCCHHHhccc
Confidence            5689999999999887742    123446899999999999999999987  44444422     333333332221111


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh------hHHHHHHhcCC------------CCCC-CCC
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG------AWYDLKRIFSP------------QASP-IGS  459 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~------~~~~l~~~l~~------------~~~~-~~~  459 (501)
                      - ....+      .....+.+.+...-. ...+|+||+++...      ....|+..+..            .+.. .+.
T Consensus       395 ~-~~~~g------~~~G~~~~~l~~~~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v  466 (784)
T PRK10787        395 R-RTYIG------SMPGKLIQKMAKVGV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV  466 (784)
T ss_pred             h-hccCC------CCCcHHHHHHHhcCC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence            0 01111      111233444443322 33478899997521      13455554432            0001 233


Q ss_pred             EEEEEeCChHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          460 RVILITREAYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       460 ~iIiTtR~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+|.|+....+...+-....++++.+++.++-.++..+++
T Consensus       467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L  506 (784)
T PRK10787        467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL  506 (784)
T ss_pred             EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence            3444554433333322255689999999999988877654

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.62  E-value=0.00059  Score=68.75  Aligned_cols=46  Identities=13%  Similarity=-0.046  Sum_probs=38.0

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus        15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~   60 (363)
T PRK14961         15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK   60 (363)
T ss_pred             hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence            4678999999999999887642 235678999999999999998874

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.61  E-value=0.00015  Score=68.52  Aligned_cols=102  Identities=22%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799          335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-  409 (501)
Q Consensus       335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-  409 (501)
                      |.++|..+=..-.++.|+|++|+|||+|+.+++........    -..++|  ++....++..++ .+++......... 
T Consensus         8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viy--i~~e~~~~~~rl-~~~~~~~~~~~~~~   84 (235)
T cd01123           8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVY--IDTEGTFRPERL-VQIAERFGLDPEEV   84 (235)
T ss_pred             hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEE--EeCCCCcCHHHH-HHHHHHhccChHhH
Confidence            33444333345579999999999999999998753222221    256788  887665554433 3333332221110 


Q ss_pred             -------CCCCHH---HHHHHHHHhcCC--ceEEEEEcCCCC
Q 010799          410 -------EESSLD---DLESEFTGILYE--KRYLVVLDDVHS  439 (501)
Q Consensus       410 -------~~~~~~---~~~~~l~~~l~~--~r~LlVlDnv~~  439 (501)
                             ...+..   .....+.+.+..  +.-|||+|.+..
T Consensus        85 ~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~  126 (235)
T cd01123          85 LDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTA  126 (235)
T ss_pred             hcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence                   112223   333445555543  567999999864

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.60  E-value=0.00037  Score=65.62  Aligned_cols=116  Identities=15%  Similarity=0.161  Sum_probs=60.7

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCC
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEE  411 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~  411 (501)
                      +..+.++...-..+...+.++|.+|+|||+||..+++  .....-..+++  ++      +.+++..+.......    .
T Consensus        85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~--it------~~~l~~~l~~~~~~~----~  150 (244)
T PRK07952         85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLI--IT------VADIMSAMKDTFSNS----E  150 (244)
T ss_pred             HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EE------HHHHHHHHHHHHhhc----c
Confidence            4444444432223345889999999999999999998  44433334455  43      344444444333211    1


Q ss_pred             CCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHH--HHHHhcCCCCCCCCCEEEEEeCC
Q 010799          412 SSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWY--DLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       412 ~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~--~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                      .+...+.+    .+. +.=||||||+..  ..+|.  .+...+... ......+||||-.
T Consensus       151 ~~~~~~l~----~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~R-y~~~~~tiitSNl  204 (244)
T PRK07952        151 TSEEQLLN----DLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRR-SSSKRPTGMLTNS  204 (244)
T ss_pred             ccHHHHHH----Hhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHH-HhCCCCEEEeCCC
Confidence            12222332    233 334888999865  23333  233333321 2334556777653

>PRK10536 hypothetical protein; Provisional

Probab=97.59  E-value=0.00061  Score=63.95  Aligned_cols=52  Identities=19%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC  378 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~  378 (501)
                      ..+.+|......+..++.+    ...+.+.|++|+|||+||..++.+.-....|..
T Consensus        55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k  106 (262)
T PRK10536         55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDR  106 (262)
T ss_pred             ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE
Confidence            3466788888999888854    249999999999999999998764222344544

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.59  E-value=0.00025  Score=74.07  Aligned_cols=132  Identities=9%  Similarity=-0.019  Sum_probs=73.3

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHH---HH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTD---IL  208 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~---i~  208 (501)
                      -.+++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+.+.-...+.+...+|.|.+-.    .+...   .+
T Consensus        13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~----~i~~~~h~dv   87 (504)
T PRK14963         13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL----AVRRGAHPDV   87 (504)
T ss_pred             HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH----HHhcCCCCce
Confidence            3578999999999998887653 2345689999999999999998764332233333344433210    00000   00


Q ss_pred             HHhcCCCCcCcchHHHHHHHH-----ccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEec
Q 010799          209 KQVGGSKVEKQLDPQKKLRKL-----FTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQ  269 (501)
Q Consensus       209 ~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr  269 (501)
                      ..++... ....+....+.+.     ..+++-++|||+++.  ...++.|...+......+.+|++|.
T Consensus        88 ~el~~~~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~  154 (504)
T PRK14963         88 LEIDAAS-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT  154 (504)
T ss_pred             EEecccc-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence            0000000 0001111222222     234666899999874  4557777777765545555555554

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.59  E-value=7.8e-05  Score=66.96  Aligned_cols=73  Identities=19%  Similarity=0.280  Sum_probs=41.2

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      ..-+.|+|++|+|||.||..+++  ....+-..+.|  ++.      .+++..+    .....  .....+..+.+.+  
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f--~~~------~~L~~~l----~~~~~--~~~~~~~~~~l~~--  108 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLF--ITA------SDLLDEL----KQSRS--DGSYEELLKRLKR--  108 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEE--EEH------HHHHHHH----HCCHC--CTTHCHHHHHHHT--
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeE--eec------Cceeccc----ccccc--ccchhhhcCcccc--
Confidence            46799999999999999999988  33333334455  442      3344443    32221  1122333333322  


Q ss_pred             CCceEEEEEcCCCC
Q 010799          426 YEKRYLVVLDDVHS  439 (501)
Q Consensus       426 ~~~r~LlVlDnv~~  439 (501)
                         .=||||||+..
T Consensus       109 ---~dlLilDDlG~  119 (178)
T PF01695_consen  109 ---VDLLILDDLGY  119 (178)
T ss_dssp             ---SSCEEEETCTS
T ss_pred             ---ccEecccccce
Confidence               24888999865

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.57  E-value=0.0003  Score=70.21  Aligned_cols=45  Identities=20%  Similarity=0.138  Sum_probs=37.4

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|++..++.|.+++..+  ..+.+-++|.+|+||||+|+.+.+
T Consensus        14 ~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~   58 (337)
T PRK12402         14 LEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR   58 (337)
T ss_pred             HHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999988754  334577999999999999999875

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=97.57  E-value=0.0013  Score=68.74  Aligned_cols=170  Identities=16%  Similarity=0.230  Sum_probs=108.7

Q ss_pred             ceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHccccc---ccCCccceeEEEEeCCCCChHHHHH
Q 010799          324 AVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYESSYT---KKNFPCRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~---~~~f~~~~w~~v~~~~~~~~~~~~~  397 (501)
                      .+-+|+.+..+|.+++..   .....+++-|.|.+|+|||+.+..+....+.   +.......+-.++.-.-..+.+++.
T Consensus       397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~  476 (767)
T KOG1514|consen  397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYE  476 (767)
T ss_pred             cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHH
Confidence            356899999999888743   2233459999999999999999999884431   1122222221145555667889999


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCChhh--HHHHHHhcCCCCCCCCCEEEEEeCC---
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHSPGA--WYDLKRIFSPQASPIGSRVILITRE---  467 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~~~~--~~~l~~~l~~~~~~~~~~iIiTtR~---  467 (501)
                      .|...+.+...    ........+..+..     .+.+++++|+++..-.  .+-+...+.|- ..++++++|.+=.   
T Consensus       477 ~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp-t~~~sKLvvi~IaNTm  551 (767)
T KOG1514|consen  477 KIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP-TLKNSKLVVIAIANTM  551 (767)
T ss_pred             HHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC-cCCCCceEEEEecccc
Confidence            99999988765    33444455555554     2468999999886422  56666677763 6778887775421   


Q ss_pred             ----hHHHhhcCC--CCcceeCCCCChHHHHHHHHHh
Q 010799          468 ----AYVARSFSP--SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       468 ----~~~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                          +.+....++  ....+..+|.+.++-.+....+
T Consensus       552 dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~R  588 (767)
T KOG1514|consen  552 DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISAR  588 (767)
T ss_pred             cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHh
Confidence                112212221  3556777888777666655544

>PRK13531 regulatory ATPase RavA; Provisional

Probab=97.56  E-value=0.00049  Score=70.33  Aligned_cols=42  Identities=12%  Similarity=0.110  Sum_probs=37.2

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..|+||++.++.+...+..+    ..|.|.|++|+|||+||+.+..
T Consensus        20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~   61 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF   61 (498)
T ss_pred             hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHH
Confidence            56999999999999888654    4789999999999999999887

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.56  E-value=0.00027  Score=76.76  Aligned_cols=46  Identities=9%  Similarity=-0.065  Sum_probs=34.6

Q ss_pred             ccccccchhhHH---HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVN---KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~---~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.+..+.   .|.+.+..+  +...+-++|++|+||||||+.+++.
T Consensus        27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~   75 (725)
T PRK13341         27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH   75 (725)
T ss_pred             HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence            357889888774   455555543  4556789999999999999999963

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.55  E-value=0.00053  Score=75.69  Aligned_cols=154  Identities=12%  Similarity=0.133  Sum_probs=86.0

Q ss_pred             cccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ..+++.|.+..++++.+++...           -...+.+.|+|++|+|||+||+.+++  .....|   +.  ++... 
T Consensus       176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~~---i~--i~~~~-  247 (733)
T TIGR01243       176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYF---IS--INGPE-  247 (733)
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCeE---EE--EecHH-
Confidence            3467899999999998876321           12346799999999999999999988  333322   11  22211 


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASP  456 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~  456 (501)
                               +.....      ....+.+...+.....+.+.+|+||+++..             .....|...+... ..
T Consensus       248 ---------i~~~~~------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l-~~  311 (733)
T TIGR01243       248 ---------IMSKYY------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL-KG  311 (733)
T ss_pred             ---------Hhcccc------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc-cc
Confidence                     110000      111223334444444556789999998652             1123344444331 12


Q ss_pred             CCCEEEE-EeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHh
Q 010799          457 IGSRVIL-ITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       457 ~~~~iIi-TtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      .+..++| ||.... +...+..   ....+.++.++.++-.+++..+
T Consensus       312 ~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~  358 (733)
T TIGR01243       312 RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVH  358 (733)
T ss_pred             CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHH
Confidence            2333444 443322 2222211   2356788888888888877643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.53  E-value=0.0015  Score=72.90  Aligned_cols=44  Identities=11%  Similarity=0.092  Sum_probs=36.9

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++||+.++.++++.|.....  .-+.++|.+|+|||+||+.+..
T Consensus       178 ~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~  221 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQ  221 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999987542  3345899999999999988874

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.53  E-value=0.00065  Score=61.94  Aligned_cols=129  Identities=19%  Similarity=0.203  Sum_probs=62.7

Q ss_pred             ecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CC-------------
Q 010799          327 SMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FD-------------  391 (501)
Q Consensus       327 GR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~-------------  391 (501)
                      .+..+.....+.|.    ...++.+.|++|+|||.||...+.+.-....|+..++  +.-.-+  .+             
T Consensus         4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii--~Rp~v~~~~~lGflpG~~~eK~~   77 (205)
T PF02562_consen    4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIII--TRPPVEAGEDLGFLPGDLEEKME   77 (205)
T ss_dssp             --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEE--EE-S--TT----SS---------
T ss_pred             CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEE--EecCCCCccccccCCCCHHHHHH
Confidence            45566777777775    3359999999999999999988765444577777666  432110  11             


Q ss_pred             -hHHHHHHHHHHhccCCCCCCCCHHHHHHH------HHHhcCCc---eEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEE
Q 010799          392 -MRSVFADILRQLTQDEVDEESSLDDLESE------FTGILYEK---RYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRV  461 (501)
Q Consensus       392 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~------l~~~l~~~---r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~i  461 (501)
                       ...-+.+.+..+...     ...+.+.+.      --.+++++   ..+||+|++++... .++...+..  .+.+|++
T Consensus        78 p~~~p~~d~l~~~~~~-----~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~-~~~k~ilTR--~g~~ski  149 (205)
T PF02562_consen   78 PYLRPIYDALEELFGK-----EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP-EELKMILTR--IGEGSKI  149 (205)
T ss_dssp             TTTHHHHHHHTTTS-T-----TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H-HHHHHHHTT--B-TT-EE
T ss_pred             HHHHHHHHHHHHHhCh-----HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH-HHHHHHHcc--cCCCcEE
Confidence             011111222222111     111221110      01334454   46999999998432 334444555  6779999


Q ss_pred             EEEeCChH
Q 010799          462 ILITREAY  469 (501)
Q Consensus       462 IiTtR~~~  469 (501)
                      |++--...
T Consensus       150 i~~GD~~Q  157 (205)
T PF02562_consen  150 IITGDPSQ  157 (205)
T ss_dssp             EEEE----
T ss_pred             EEecCcee
Confidence            99965443

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.53  E-value=0.00051  Score=72.34  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.++.
T Consensus       287 e~~~i~G~NGsGKSTLl~~l~G  308 (490)
T PRK10938        287 EHWQIVGPNGAGKSTLLSLITG  308 (490)
T ss_pred             CEEEEECCCCCCHHHHHHHHcC
Confidence            5999999999999999999876

>PRK08118 topology modulation protein; Reviewed

Probab=97.52  E-value=3.5e-05  Score=68.51  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=28.6

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccc-cccceeEE
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVK-EYFQCRAW  191 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~-~~F~~~~w  191 (501)
                      +-|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            358999999999999999999766554 45777775

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.52  E-value=0.0012  Score=63.29  Aligned_cols=155  Identities=12%  Similarity=0.167  Sum_probs=77.9

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH----------
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL----------  400 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~----------  400 (501)
                      -++++..++..    .+.+.|+|++|+|||+||+.++.  .....|   ..  +++....+..+++....          
T Consensus        10 l~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~--~lg~~~---~~--i~~~~~~~~~dllg~~~~~~~~~~~~~   78 (262)
T TIGR02640        10 VTSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVAR--KRDRPV---ML--INGDAELTTSDLVGSYAGYTRKKVHDQ   78 (262)
T ss_pred             HHHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHH--HhCCCE---EE--EeCCccCCHHHHhhhhcccchhhHHHH
Confidence            34444444432    24677999999999999999887  333322   33  55555444444432211          


Q ss_pred             --HHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC--------------CCCCCEEE
Q 010799          401 --RQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA--------------SPIGSRVI  462 (501)
Q Consensus       401 --~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~--------------~~~~~~iI  462 (501)
                        ..............  .-..+.... .+...+++|+++.  .+.+..|...+....              ..++.+||
T Consensus        79 ~~~~~~~~~~~~~~~~--~~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvI  155 (262)
T TIGR02640        79 FIHNVVKLEDIVRQNW--VDNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVI  155 (262)
T ss_pred             HHHHhhhhhcccceee--cCchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEE
Confidence              00000000000000  000111111 1346888999986  445555555443200              12366888


Q ss_pred             EEeCChHHH------hhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          463 LITREAYVA------RSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       463 iTtR~~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +|+-.....      .........+.++.++.++-.+++.++.
T Consensus       156 aTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~  198 (262)
T TIGR02640       156 FTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT  198 (262)
T ss_pred             EeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh
Confidence            887643211      1111133467788888888888877653

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.52  E-value=0.0011  Score=70.09  Aligned_cols=23  Identities=30%  Similarity=0.640  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -.+++|.|+.|+|||||.+.++.
T Consensus       289 Ge~~~l~G~NGsGKSTLlk~i~G  311 (510)
T PRK09700        289 GEILGFAGLVGSGRTELMNCLFG  311 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            36999999999999999999875

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.50  E-value=0.00048  Score=67.09  Aligned_cols=111  Identities=13%  Similarity=0.100  Sum_probs=80.8

Q ss_pred             ccccccchhhHHHHHHHHhcCCCC-eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSS-LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      ++.+.+|+.....|..+|...+.. ...|-|.|-.|.|||.+.+++++...     ...+|++.-+.|...-++..|+.+
T Consensus         5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~   79 (438)
T KOG2543|consen    5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNK   79 (438)
T ss_pred             ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHH
Confidence            457889999999999999876543 34457899999999999999997652     245899999999999999999999


Q ss_pred             hcCCCCc-C--cc------hHHHHHHH--Hcc--CCeEEEEEecCCChhH
Q 010799          211 VGGSKVE-K--QL------DPQKKLRK--LFT--ENRYLVVIINARTPDI  247 (501)
Q Consensus       211 ~~~~~~~-~--~~------~~~~~l~~--~l~--~kr~LlVlDdv~~~~~  247 (501)
                      .+..... .  ..      +....+.+  ...  ++.++||||++....+
T Consensus        80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD  129 (438)
T KOG2543|consen   80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD  129 (438)
T ss_pred             hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence            9622221 1  11      12233333  122  4689999999875443

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.50  E-value=0.0013  Score=66.86  Aligned_cols=134  Identities=16%  Similarity=0.171  Sum_probs=82.5

Q ss_pred             cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC-ChHHHHHHHHHHhccC
Q 010799          328 MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF-DMRSVFADILRQLTQD  406 (501)
Q Consensus       328 R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~  406 (501)
                      |..-+.++.+.+..   ...++.|.|+-++||||+++.+..  ...+.   .++  ++..+.. +-..+ .+.       
T Consensus        22 ~~~~~~~l~~~~~~---~~~i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy--~~~~d~~~~~~~l-~d~-------   83 (398)
T COG1373          22 RRKLLPRLIKKLDL---RPFIILILGPRQVGKTTLLKLLIK--GLLEE---IIY--INFDDLRLDRIEL-LDL-------   83 (398)
T ss_pred             HHhhhHHHHhhccc---CCcEEEEECCccccHHHHHHHHHh--hCCcc---eEE--EEecchhcchhhH-HHH-------
Confidence            33444555554422   222999999999999999976665  33333   333  3321111 11111 111       


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHH-----HhhcCCCCcce
Q 010799          407 EVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYV-----ARSFSPSIFLH  481 (501)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~-----~~~~~~~~~~~  481 (501)
                                 ...+...-..++..|+||.|+....|......+.+  ..+. ++++|+-+...     +....+....+
T Consensus        84 -----------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d--~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~  149 (398)
T COG1373          84 -----------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYD--RGNL-DVLITGSSSSLLSKEISESLAGRGKDL  149 (398)
T ss_pred             -----------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHc--cccc-eEEEECCchhhhccchhhhcCCCceeE
Confidence                       11111111126789999999999999999999998  5555 88888776543     33333366789


Q ss_pred             eCCCCChHHHHH
Q 010799          482 QLRPLNEEESGK  493 (501)
Q Consensus       482 ~l~~L~~~ea~~  493 (501)
                      ++-|||..|-..
T Consensus       150 ~l~PlSF~Efl~  161 (398)
T COG1373         150 ELYPLSFREFLK  161 (398)
T ss_pred             EECCCCHHHHHh
Confidence            999999998765

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.49  E-value=0.00041  Score=64.69  Aligned_cols=33  Identities=33%  Similarity=0.603  Sum_probs=28.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCcccee
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW  381 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w  381 (501)
                      -.++|.|.+|+|||+|+..+..  .....|..+++
T Consensus        14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l   46 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFL   46 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEE
Confidence            4788999999999999999988  67788866655

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.49  E-value=0.0008  Score=71.17  Aligned_cols=130  Identities=12%  Similarity=0.047  Sum_probs=71.7

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV  211 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~  211 (501)
                      -.+++|.+.....|.+++..+. -.+.+-++|..|+||||+|+.+.+.-.      |.-++.. ..|+.-...+.|...-
T Consensus        14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~Ln------C~~~~~~-~pCg~C~sC~~I~~g~   85 (702)
T PRK14960         14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLN------CETGVTS-TPCEVCATCKAVNEGR   85 (702)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhC------CCcCCCC-CCCccCHHHHHHhcCC
Confidence            4679999999999999998653 235778899999999999998864211      1111111 1111111111111100


Q ss_pred             cCC-------CCcCcchHHHHHHHH-----ccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecc
Q 010799          212 GGS-------KVEKQLDPQKKLRKL-----FTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQE  270 (501)
Q Consensus       212 ~~~-------~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~  270 (501)
                      ..+       ......+. ..+...     ..+++-++|+|++..  ...++.|...+.....+.++|++|.+
T Consensus        86 hpDviEIDAAs~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd  157 (702)
T PRK14960         86 FIDLIEIDAASRTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD  157 (702)
T ss_pred             CCceEEecccccCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence            000       00000111 111111     235666889999864  45677777766655566778877755

>PRK09183 transposase/IS protein; Provisional

Probab=97.48  E-value=0.00029  Score=67.35  Aligned_cols=22  Identities=32%  Similarity=0.312  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+.|+|++|+|||+||..+++
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~  124 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGY  124 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            5788999999999999999977

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.00079  Score=64.13  Aligned_cols=140  Identities=17%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             CceEEEEEecCCCChHHHHHHHHccccc--ccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYT--KKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFT  422 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~--~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~  422 (501)
                      ..|+|.++||||.|||+|++.++.+..+  .+.|....-  +-+..    -.++...   +...    ......+++.+.
T Consensus       176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~l--iEins----hsLFSKW---FsES----gKlV~kmF~kI~  242 (423)
T KOG0744|consen  176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQL--IEINS----HSLFSKW---FSES----GKLVAKMFQKIQ  242 (423)
T ss_pred             eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceE--EEEeh----hHHHHHH---Hhhh----hhHHHHHHHHHH
Confidence            3489999999999999999999986543  344432222  22211    1111111   1111    224566778888


Q ss_pred             HhcCCceEE--EEEcCCCCh-----------------hhHHHHHHhcCCCCCCCCCEEEEEeCChH--HHhhc-CCCCcc
Q 010799          423 GILYEKRYL--VVLDDVHSP-----------------GAWYDLKRIFSPQASPIGSRVILITREAY--VARSF-SPSIFL  480 (501)
Q Consensus       423 ~~l~~~r~L--lVlDnv~~~-----------------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~--~~~~~-~~~~~~  480 (501)
                      +.+.++..|  +.+|+|++.                 ...+.++-.+... ....--+|+||.+-.  +...+ .+..-+
T Consensus       243 ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-K~~~NvliL~TSNl~~siD~AfVDRADi~  321 (423)
T KOG0744|consen  243 ELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-KRYPNVLILATSNLTDSIDVAFVDRADIV  321 (423)
T ss_pred             HHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-ccCCCEEEEeccchHHHHHHHhhhHhhhe
Confidence            888876543  458998762                 1133344433331 111223555665532  11111 113457


Q ss_pred             eeCCCCChHHHHHHHHHh
Q 010799          481 HQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       481 ~~l~~L~~~ea~~Lf~~~  498 (501)
                      .-+++.+.+.-++++.-.
T Consensus       322 ~yVG~Pt~~ai~~Ilksc  339 (423)
T KOG0744|consen  322 FYVGPPTAEAIYEILKSC  339 (423)
T ss_pred             eecCCccHHHHHHHHHHH
Confidence            778888888888777654

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.47  E-value=0.0016  Score=72.88  Aligned_cols=164  Identities=16%  Similarity=0.225  Sum_probs=90.2

Q ss_pred             cceeecchhHHHHHHHhhcC------CCC-ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799          323 TAVVSMENDILKLAKLTLNS------SDK-NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~------~~~-~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~  395 (501)
                      ..++|.+..++.+...+...      ..+ ...+.+.|++|+|||++|+.+..  .....-...+.  ++++.-.+ .. 
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~--~d~s~~~~-~~-  638 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVR--IDMSEYME-KH-  638 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEE--Eechhhcc-cc-
Confidence            46899999999999888542      112 35788999999999999999887  33222122222  34332111 11 


Q ss_pred             HHHHHHHhccCCCC-CCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEE
Q 010799          396 FADILRQLTQDEVD-EESSLDDLESEFTGILYEK-RYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVI  462 (501)
Q Consensus       396 ~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iI  462 (501)
                         ....+.+..+. .....   ...+.+.+..+ ..+|+||+++.  ...++.|+..+....         ...++.||
T Consensus       639 ---~~~~l~g~~~g~~g~~~---~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI  712 (852)
T TIGR03346       639 ---SVARLIGAPPGYVGYEE---GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII  712 (852)
T ss_pred             ---hHHHhcCCCCCccCccc---ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence               11112111111 01110   11222223223 34899999986  566677777664410         02345577


Q ss_pred             EEeCChH----------------------HHhhcCC-----CCcceeCCCCChHHHHHHHHHh
Q 010799          463 LITREAY----------------------VARSFSP-----SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       463 iTtR~~~----------------------~~~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +||....                      +...+.+     -..++...||+.++..+++...
T Consensus       713 ~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~  775 (852)
T TIGR03346       713 MTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQ  775 (852)
T ss_pred             EeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHH
Confidence            7776511                      1111111     2357888999998888777654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.47  E-value=0.00088  Score=70.33  Aligned_cols=46  Identities=13%  Similarity=-0.047  Sum_probs=37.7

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus        15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk   60 (546)
T PRK14957         15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK   60 (546)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999887542 234567899999999999998874

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.46  E-value=0.00017  Score=66.01  Aligned_cols=49  Identities=10%  Similarity=-0.092  Sum_probs=35.2

Q ss_pred             cccccccchhhHHHHHHHHhc---CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          131 KKTGILDLNKEVNKLADFLIR---SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       131 ~~~~~vg~~~~~~~l~~~L~~---~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .-.+++|.++-++.+.-++..   ....+.-+-.||++|+||||||+.+.+.
T Consensus        22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e   73 (233)
T PF05496_consen   22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE   73 (233)
T ss_dssp             SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred             CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc
Confidence            357899999999887665542   3346778889999999999999999964

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.46  E-value=0.00047  Score=67.72  Aligned_cols=114  Identities=13%  Similarity=0.178  Sum_probs=64.0

Q ss_pred             cccccchhhHH--H-HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHH
Q 010799          133 TGILDLNKEVN--K-LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILK  209 (501)
Q Consensus       133 ~~~vg~~~~~~--~-l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~  209 (501)
                      .++||.+.-+.  . |-+++..+  ++.-.-.||++|+||||||+.+..  .....|     ..+|-.++-.+=++++++
T Consensus        24 de~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e   94 (436)
T COG2256          24 DEVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIE   94 (436)
T ss_pred             HHhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHH
Confidence            45666654442  2 33333332  455566899999999999999984  333333     333333322222223322


Q ss_pred             HhcCCCCcCcchHHHHHHHHccCCeEEEEEecCC--ChhHHHHHhhcCCCCCCCcEEEE--Eecccc
Q 010799          210 QVGGSKVEKQLDPQKKLRKLFTENRYLVVIINAR--TPDIWDILKYLFPNSSNGSRVIL--SFQEAD  272 (501)
Q Consensus       210 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iiv--Ttr~~~  272 (501)
                      ...              +....|+|.+|.||.|.  |..+=+.+   +|.-.+|.-|+|  ||.|+.
T Consensus        95 ~a~--------------~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPs  144 (436)
T COG2256          95 EAR--------------KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPS  144 (436)
T ss_pred             HHH--------------HHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCC
Confidence            211              22234899999999995  33333334   444566887775  566555

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.46  E-value=0.00018  Score=67.33  Aligned_cols=40  Identities=10%  Similarity=-0.053  Sum_probs=30.2

Q ss_pred             chhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          138 LNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       138 ~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+..++.+.+++..  .....+.++|.+|+|||+||+.+++.
T Consensus        22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~   61 (226)
T TIGR03420        22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA   61 (226)
T ss_pred             cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34566667776543  24567889999999999999999864

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd01394 radB RadB

Probab=97.46  E-value=0.00041  Score=64.65  Aligned_cols=101  Identities=20%  Similarity=0.157  Sum_probs=55.7

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHh----ccCCC
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL----TQDEV  408 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l----~~~~~  408 (501)
                      ..|..+|..+=..-+++.|+|.+|+|||++|.+++.  .....-..++|  ++....+.  .-+.+++...    .....
T Consensus         6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~y--i~~e~~~~--~~~~~~~~~~~~~~~~~~~   79 (218)
T cd01394           6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAY--IDTEGLSS--ERFRQIAGDRPERAASSII   79 (218)
T ss_pred             hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EECCCCCH--HHHHHHHhHChHhhhcCEE
Confidence            345555543334557999999999999999999887  33333334567  66543332  3333333321    10000


Q ss_pred             -CCCCCHHHH---HHHHHHhcCCceEEEEEcCCCC
Q 010799          409 -DEESSLDDL---ESEFTGILYEKRYLVVLDDVHS  439 (501)
Q Consensus       409 -~~~~~~~~~---~~~l~~~l~~~r~LlVlDnv~~  439 (501)
                       ....+..+.   ...+...+..+.-++|+|.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~  114 (218)
T cd01394          80 VFEPMDFNEQGRAIQETETFADEKVDLVVVDSATA  114 (218)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcCCcEEEEechHH
Confidence             012222232   3344455544466899999764

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.45  E-value=0.001  Score=70.15  Aligned_cols=46  Identities=15%  Similarity=-0.021  Sum_probs=37.8

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++||.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus        15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk   60 (700)
T PRK12323         15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK   60 (700)
T ss_pred             HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence            4679999999999999998653 234567899999999999988864

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.45  E-value=0.00045  Score=64.70  Aligned_cols=99  Identities=20%  Similarity=0.215  Sum_probs=56.4

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH----hccCC-C
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ----LTQDE-V  408 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~----l~~~~-~  408 (501)
                      .|.++|..+=..-.++.|+|++|+|||++|.+++.  .....-..++|  ++.. ..+...+ .+++..    +.... .
T Consensus        11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~y--i~~e-~~~~~r~-~~~~~~~~~~~~~~~~~   84 (225)
T PRK09361         11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIY--IDTE-GLSPERF-KQIAGEDFEELLSNIII   84 (225)
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEE--EECC-CCCHHHH-HHHHhhChHhHhhCeEE
Confidence            34455544334557999999999999999999887  33333456678  7765 3443332 233322    10000 0


Q ss_pred             CCCCCHH---HHHHHHHHhcCCceEEEEEcCCC
Q 010799          409 DEESSLD---DLESEFTGILYEKRYLVVLDDVH  438 (501)
Q Consensus       409 ~~~~~~~---~~~~~l~~~l~~~r~LlVlDnv~  438 (501)
                      ....+..   +.+..+.+++..+.-++|+|.+.
T Consensus        85 ~~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~  117 (225)
T PRK09361         85 FEPSSFEEQSEAIRKAEKLAKENVGLIVLDSAT  117 (225)
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence            0122222   23444455554566799999975

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.45  E-value=0.0013  Score=69.57  Aligned_cols=22  Identities=32%  Similarity=0.729  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.++.
T Consensus       289 e~~~l~G~NGsGKSTLlk~i~G  310 (506)
T PRK13549        289 EILGIAGLVGAGRTELVQCLFG  310 (506)
T ss_pred             cEEEEeCCCCCCHHHHHHHHhC
Confidence            6999999999999999999886

>COG3899 Predicted ATPase [General function prediction only]

Probab=97.45  E-value=0.00072  Score=75.22  Aligned_cols=49  Identities=22%  Similarity=0.318  Sum_probs=40.4

Q ss_pred             eeecchhHHHHHHHhhcC-CCCceEEEEEecCCCChHHHHHHHHcccccccC
Q 010799          325 VVSMENDILKLAKLTLNS-SDKNFLISVAGAAGSGKTALVKTIYESSYTKKN  375 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~~-~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~  375 (501)
                      ++||+.+++.|...+.+- .....++.+.|.+|+|||+|++++..  .+...
T Consensus         2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~   51 (849)
T COG3899           2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQ   51 (849)
T ss_pred             CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence            789999999999988653 33446999999999999999999987  44443

>PRK09354 recA recombinase A; Provisional

Probab=97.45  E-value=0.00068  Score=66.85  Aligned_cols=97  Identities=16%  Similarity=0.142  Sum_probs=62.4

Q ss_pred             HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799          334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV----  408 (501)
Q Consensus       334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~----  408 (501)
                      .|..+|. .+=+.-+++-|+|++|+|||+||.+++.  .....-..++|  +...+..+..     .+..++.+..    
T Consensus        47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~y--Id~E~s~~~~-----~a~~lGvdld~lli  117 (349)
T PRK09354         47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAF--IDAEHALDPV-----YAKKLGVDIDNLLV  117 (349)
T ss_pred             HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--ECCccchHHH-----HHHHcCCCHHHeEE
Confidence            3445554 3435568999999999999999999876  33334455678  7776655542     3344433211    


Q ss_pred             CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          409 DEESSLDDLESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       409 ~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                      .+..+.++....+...+.. ..-+||+|.+..
T Consensus       118 ~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaa  149 (349)
T PRK09354        118 SQPDTGEQALEIADTLVRSGAVDLIVVDSVAA  149 (349)
T ss_pred             ecCCCHHHHHHHHHHHhhcCCCCEEEEeChhh
Confidence            1344566777777776654 456999999764

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.45  E-value=0.00025  Score=69.85  Aligned_cols=101  Identities=16%  Similarity=0.136  Sum_probs=53.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      ..+.++|++|+|||.||..+++  .....-..+++  +++      .+++..+..... ...   ...   ...+ +.+.
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y--~t~------~~l~~~l~~~~~-~~~---~~~---~~~~-~~l~  245 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIY--RTA------DELIEILREIRF-NND---KEL---EEVY-DLLI  245 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEE--EEH------HHHHHHHHHHHh-ccc---hhH---HHHH-HHhc
Confidence            6799999999999999999998  44443334555  443      233333332111 110   011   1112 2222


Q ss_pred             CceEEEEEcCCCC----hhhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799          427 EKRYLVVLDDVHS----PGAWYDLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       427 ~~r~LlVlDnv~~----~~~~~~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                       ..=||||||+..    ......+...+... ...+..+||||-.
T Consensus       246 -~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R-~~~~k~tIiTSNl  288 (329)
T PRK06835        246 -NCDLLIIDDLGTEKITEFSKSELFNLINKR-LLRQKKMIISTNL  288 (329)
T ss_pred             -cCCEEEEeccCCCCCCHHHHHHHHHHHHHH-HHCCCCEEEECCC
Confidence             224899999954    22223444444431 2335567888764

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.44  E-value=0.001  Score=72.48  Aligned_cols=47  Identities=9%  Similarity=-0.038  Sum_probs=37.9

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.+..+..|.+++..+. =...+-++|..|+||||+|+.+.+.
T Consensus        15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~   61 (944)
T PRK14949         15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG   61 (944)
T ss_pred             HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999987642 2344578999999999999998753

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=97.44  E-value=0.00067  Score=73.21  Aligned_cols=112  Identities=12%  Similarity=0.070  Sum_probs=72.0

Q ss_pred             ccccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhccccc---ccccce--eEEEEcCCCCCHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYECETV---KEYFQC--RAWVPVPEELERREL  203 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v---~~~F~~--~~wv~vs~~~~~~~l  203 (501)
                      +..+.||+++.++|...|...   ...-.++-|+|++|+|||+.++.|.+.-.-   ...+..  .++|....-.+...+
T Consensus       754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI  833 (1164)
T PTZ00112        754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA  833 (1164)
T ss_pred             CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence            356889999999999988742   223357789999999999999999853211   112222  234433444577888


Q ss_pred             HHHHHHHhcCCCCcCc---chHHHHHHHHccC---CeEEEEEecCC
Q 010799          204 VTDILKQVGGSKVEKQ---LDPQKKLRKLFTE---NRYLVVIINAR  243 (501)
Q Consensus       204 ~~~i~~~~~~~~~~~~---~~~~~~l~~~l~~---kr~LlVlDdv~  243 (501)
                      ...|.+++........   .+....+...+..   ...+||||+|.
T Consensus       834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID  879 (1164)
T PTZ00112        834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEID  879 (1164)
T ss_pred             HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHh
Confidence            8888888854332211   2234445444422   23589999985

>PLN03025 replication factor C subunit; Provisional

Probab=97.43  E-value=0.00093  Score=66.15  Aligned_cols=45  Identities=13%  Similarity=0.115  Sum_probs=35.7

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.++.+..|..++..+  +.+.+-++|.+|+||||+|+.+.+
T Consensus        12 l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~   56 (319)
T PLN03025         12 LDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAH   56 (319)
T ss_pred             HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence            457889888888888777654  334467899999999999998875

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.0027  Score=64.42  Aligned_cols=153  Identities=12%  Similarity=0.149  Sum_probs=81.8

Q ss_pred             cccceeecch---hHHHHHHHhhcCC-------CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeC-CC
Q 010799          321 EVTAVVSMEN---DILKLAKLTLNSS-------DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVS-QD  389 (501)
Q Consensus       321 ~~~~fvGR~~---~~~~l~~~L~~~~-------~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~-~~  389 (501)
                      .++++-|-++   |++++.++|.++.       .=++-|.++|++|.|||-||+.++.  +..-.     |  ++++ +.
T Consensus       302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG--EA~VP-----F--F~~sGSE  372 (752)
T KOG0734|consen  302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG--EAGVP-----F--FYASGSE  372 (752)
T ss_pred             ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc--ccCCC-----e--Eeccccc
Confidence            3566777664   5666677775532       2346799999999999999999988  33222     2  3332 22


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASP  456 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~  456 (501)
                      ++..         +-+      -.-..+.+.+...-..-+|+|++|+++..             ..++.++..+.-+..+
T Consensus       373 FdEm---------~VG------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN  437 (752)
T KOG0734|consen  373 FDEM---------FVG------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN  437 (752)
T ss_pred             hhhh---------hhc------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC
Confidence            2110         000      11122333344444455899999998861             2245566655553123


Q ss_pred             CCCEEEEEeCC-hHHHhhcCC---CCcceeCCCCChHHHHHHHHH
Q 010799          457 IGSRVILITRE-AYVARSFSP---SIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       457 ~~~~iIiTtR~-~~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                      .|.-||-.|-. +.+...+-.   ....+.|+..+..--.++|..
T Consensus       438 eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~  482 (752)
T KOG0734|consen  438 EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKL  482 (752)
T ss_pred             CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHH
Confidence            44433333433 333333322   344566666555444444443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.43  E-value=0.00053  Score=58.24  Aligned_cols=88  Identities=16%  Similarity=-0.080  Sum_probs=44.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-CcchHHHHHHHHccCCe-
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE-KQLDPQKKLRKLFTENR-  234 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-~~~~~~~~l~~~l~~kr-  234 (501)
                      ..+.|+|.+|+||||+++.+.....  ......+.+..+........... .......... ........+.+..+..+ 
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP   79 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence            5788999999999999999985322  22112334433332221111111 0111111111 11112344445554444 


Q ss_pred             EEEEEecCCChhH
Q 010799          235 YLVVIINARTPDI  247 (501)
Q Consensus       235 ~LlVlDdv~~~~~  247 (501)
                      .+|++|++.....
T Consensus        80 ~viiiDei~~~~~   92 (148)
T smart00382       80 DVLILDEITSLLD   92 (148)
T ss_pred             CEEEEECCcccCC
Confidence            8999999986444

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.42  E-value=0.00099  Score=65.90  Aligned_cols=118  Identities=10%  Similarity=0.038  Sum_probs=68.7

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV  211 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~  211 (501)
                      ..+++|.+...+.+..++..+. -..++-++|.+|+||||+|+.+++..  ...|   ..+..+. .. ...++..+..+
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~--~~~~---~~i~~~~-~~-~~~i~~~l~~~   91 (316)
T PHA02544         20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEV--GAEV---LFVNGSD-CR-IDFVRNRLTRF   91 (316)
T ss_pred             HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHh--Cccc---eEeccCc-cc-HHHHHHHHHHH
Confidence            4678999999999999987542 34677779999999999999998632  1111   2222222 12 11122211111


Q ss_pred             cCCCCcCcchHHHHHHHHccCCeEEEEEecCCCh---hHHHHHhhcCCCCCCCcEEEEEecc
Q 010799          212 GGSKVEKQLDPQKKLRKLFTENRYLVVIINARTP---DIWDILKYLFPNSSNGSRVILSFQE  270 (501)
Q Consensus       212 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~iivTtr~  270 (501)
                      ...             ..+.+.+-+||+||+...   +....+...+.....++++|+||..
T Consensus        92 ~~~-------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~  140 (316)
T PHA02544         92 AST-------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANN  140 (316)
T ss_pred             HHh-------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence            100             001134457889998643   2233444444444567788888864

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=97.42  E-value=0.002  Score=63.91  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=40.0

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|+...+.++.+.+..-.....-|.|+|.+|+||+++|+.+..
T Consensus         4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~   51 (326)
T PRK11608          4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY   51 (326)
T ss_pred             ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999988865444456899999999999999998765

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00057  Score=73.47  Aligned_cols=152  Identities=15%  Similarity=0.187  Sum_probs=92.5

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-CCc-----cceeEEEEeCCCCChHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-NFP-----CRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-~f~-----~~~w~~v~~~~~~~~~~~~  396 (501)
                      +.++||++++.++.+.|+....+.+  .++|.+|||||+++..++.  ++.+ .-+     ..++   +.          
T Consensus       170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~---sL----------  232 (786)
T COG0542         170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIY---SL----------  232 (786)
T ss_pred             CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEE---Ee----------
Confidence            4589999999999999987655444  4679999999998888776  3322 211     1111   10          


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHhcC-CceEEEEEcCCCCh-----------hhHHHHHHhcCCCCCCCCCEEEEE
Q 010799          397 ADILRQLTQDEVDEESSLDDLESEFTGILY-EKRYLVVLDDVHSP-----------GAWYDLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~~-----------~~~~~l~~~l~~~~~~~~~~iIiT  464 (501)
                       ++.....+...  ....++..+.+-+.+. ..+.+|++|.+...           +.-+.|++.|..   + ..+.|-.
T Consensus       233 -D~g~LvAGaky--RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR---G-eL~~IGA  305 (786)
T COG0542         233 -DLGSLVAGAKY--RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR---G-ELRCIGA  305 (786)
T ss_pred             -cHHHHhccccc--cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc---C-CeEEEEe
Confidence             11222222221  2345555555555554 45899999998651           123445555555   2 2344544


Q ss_pred             eCChHHHhhcC------CCCcceeCCCCChHHHHHHHHHh
Q 010799          465 TREAYVARSFS------PSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       465 tR~~~~~~~~~------~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      |...+.-+.+.      .....+.|+..+.+++...++..
T Consensus       306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl  345 (786)
T COG0542         306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL  345 (786)
T ss_pred             ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence            44444332222      25679999999999999988743

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.0024  Score=68.31  Aligned_cols=156  Identities=14%  Similarity=0.176  Sum_probs=90.9

Q ss_pred             ccccceeecchh---HHHHHHHhhcC-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          320 EEVTAVVSMEND---ILKLAKLTLNS-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       320 ~~~~~fvGR~~~---~~~l~~~L~~~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      -.+.++.|-++.   +.++.++|.++       ..-++-+.|+||+|+|||-||++++.  ..     .+.|  ++++..
T Consensus       308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAG--EA-----gVPF--~svSGS  378 (774)
T KOG0731|consen  308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAG--EA-----GVPF--FSVSGS  378 (774)
T ss_pred             CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhc--cc-----CCce--eeechH
Confidence            345778887755   45555556442       34557899999999999999999998  22     3344  565432


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-----------------hhHHHHHHhcCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-----------------GAWYDLKRIFSP  452 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-----------------~~~~~l~~~l~~  452 (501)
                              ++.+.+.....      ....+.+...-.+.+++|.+|+++..                 ..++.++....-
T Consensus       379 --------EFvE~~~g~~a------srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg  444 (774)
T KOG0731|consen  379 --------EFVEMFVGVGA------SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG  444 (774)
T ss_pred             --------HHHHHhcccch------HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence                    23333332211      12233333333456889999987651                 224455554444


Q ss_pred             CCCCCCCEEEE--EeCChH-HHhh-cCC--CCcceeCCCCChHHHHHHHHHhhc
Q 010799          453 QASPIGSRVIL--ITREAY-VARS-FSP--SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       453 ~~~~~~~~iIi--TtR~~~-~~~~-~~~--~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                        +.....||+  +|.... +... +.+  -...+.++..+.....++|.-++.
T Consensus       445 --f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~  496 (774)
T KOG0731|consen  445 --FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLR  496 (774)
T ss_pred             --CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhh
Confidence              233333333  343333 2222 222  456888999998888888887764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.40  E-value=0.0018  Score=68.43  Aligned_cols=22  Identities=36%  Similarity=0.750  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.++.
T Consensus       287 e~~~l~G~NGsGKSTLl~~l~G  308 (500)
T TIGR02633       287 EILGVAGLVGAGRTELVQALFG  308 (500)
T ss_pred             cEEEEeCCCCCCHHHHHHHHhC
Confidence            6999999999999999999876

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.39  E-value=0.0019  Score=63.79  Aligned_cols=121  Identities=14%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc--CCCCCHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV--PEELERRELVTDILK  209 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v--s~~~~~~~l~~~i~~  209 (501)
                      -.+++|++..++.|..++...  ..+.+-++|.+|+||||+|+.+.+.-. ...+.. .++.+  +...... .....+.
T Consensus        16 ~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~~~i~   90 (319)
T PRK00440         16 LDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIRNKIK   90 (319)
T ss_pred             HHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHHHHHH
Confidence            457899999999999998754  344578999999999999999985321 111211 12222  2222222 1222222


Q ss_pred             HhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEec
Q 010799          210 QVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQ  269 (501)
Q Consensus       210 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr  269 (501)
                      .+.....            .-...+-++++|++..  ....+.+...+......+.+|+++.
T Consensus        91 ~~~~~~~------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~  140 (319)
T PRK00440         91 EFARTAP------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCN  140 (319)
T ss_pred             HHHhcCC------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence            1111000            0012345888999754  3345556655554445577777764

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=97.38  E-value=0.00066  Score=71.73  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=37.6

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++++|.+..++.+...+...  ....+.|+|++|+|||++|+.+++
T Consensus        64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~  108 (531)
T TIGR02902        64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLE  108 (531)
T ss_pred             HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999877543  335678999999999999999875

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=97.38  E-value=0.0002  Score=73.82  Aligned_cols=166  Identities=16%  Similarity=0.186  Sum_probs=99.5

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      +.+++|-+.....|...+..+ .-.+--...|+-|+||||+|+-++......+.-.         ..++.-...+.+|..
T Consensus        15 F~evvGQe~v~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~---------~ePC~~C~~Ck~I~~   84 (515)
T COG2812          15 FDDVVGQEHVVKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENGPT---------AEPCGKCISCKEINE   84 (515)
T ss_pred             HHHhcccHHHHHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCC---------CCcchhhhhhHhhhc
Confidence            577899999999999999653 2335667889999999999999876432221000         011111111122221


Q ss_pred             H-------hccCCCCCCCCHHHHHHHHHHhcC-CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHH
Q 010799          402 Q-------LTQDEVDEESSLDDLESEFTGILY-EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYV  470 (501)
Q Consensus       402 ~-------l~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~  470 (501)
                      -       +........++..++.+.+...-. ++--+.|+|+|.-  ...++.|+..+-.  ...+...|+.|++ ..+
T Consensus        85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE--PP~hV~FIlATTe~~Ki  162 (515)
T COG2812          85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE--PPSHVKFILATTEPQKI  162 (515)
T ss_pred             CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc--CccCeEEEEecCCcCcC
Confidence            1       001111011122222232222222 3445889999874  6778999999888  6667666665554 456


Q ss_pred             HhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          471 ARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       471 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+-+.-..|.+..++.++-...+..-+
T Consensus       163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~  191 (515)
T COG2812         163 PNTILSRCQRFDFKRLDLEEIAKHLAAIL  191 (515)
T ss_pred             chhhhhccccccccCCCHHHHHHHHHHHH
Confidence            55555566789999999998877776543

>PRK08116 hypothetical protein; Validated

Probab=97.37  E-value=0.00024  Score=68.21  Aligned_cols=100  Identities=12%  Similarity=0.060  Sum_probs=57.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL  236 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L  236 (501)
                      .-+-++|.+|+|||.||..+++...  .+--..+++      +..+++..+...+......    ....+.+.+.+-. |
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~------~~~~ll~~i~~~~~~~~~~----~~~~~~~~l~~~d-l  181 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFV------NFPQLLNRIKSTYKSSGKE----DENEIIRSLVNAD-L  181 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEE------EHHHHHHHHHHHHhccccc----cHHHHHHHhcCCC-E
Confidence            3478999999999999999997432  222233455      3555666666555432111    1223344444333 8


Q ss_pred             EEEecCC--ChhHHH--HHhhcCCC-CCCCcEEEEEec
Q 010799          237 VVIINAR--TPDIWD--ILKYLFPN-SSNGSRVILSFQ  269 (501)
Q Consensus       237 lVlDdv~--~~~~~~--~l~~~~~~-~~~gs~iivTtr  269 (501)
                      |||||+-  ...+|.  .+...+.. -..|..+|+||.
T Consensus       182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN  219 (268)
T PRK08116        182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN  219 (268)
T ss_pred             EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence            9999993  344553  23322221 134566888884

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.37  E-value=0.0014  Score=73.03  Aligned_cols=44  Identities=18%  Similarity=0.142  Sum_probs=37.0

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++||++++.++++.|....  ..-+.++|.+|+||||+|+.+..
T Consensus       187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~  230 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL  230 (852)
T ss_pred             CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence            678999999999999998653  22345899999999999998875

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=97.37  E-value=0.0053  Score=60.38  Aligned_cols=155  Identities=9%  Similarity=0.121  Sum_probs=89.4

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC---cc-ce--eEEEEeCCCCChHHHHHHHHHHhc
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PC-RA--WANVYVSQDFDMRSVFADILRQLT  404 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~-~~--w~~v~~~~~~~~~~~~~~i~~~l~  404 (501)
                      ..+.|.+.+..+ .-++...++|+.|+||+++|..++...-..+..   .| .+  ...+.....+|+..+        .
T Consensus        10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~   80 (325)
T PRK06871         10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E   80 (325)
T ss_pred             HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c
Confidence            345555555332 334678899999999999999987643211111   00 00  000111222221110        0


Q ss_pred             cCCCCCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCC
Q 010799          405 QDEVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSP  476 (501)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~  476 (501)
                      .. .......+++.+ +.+.+.     +++-++|+|+++.  ....+.|+..+-.  .++++.+|++|.+. .+...+.+
T Consensus        81 p~-~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S  156 (325)
T PRK06871         81 PI-DNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS  156 (325)
T ss_pred             cc-cCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh
Confidence            00 001122333332 223322     3456888999986  5667889999998  77788888887765 44444444


Q ss_pred             CCcceeCCCCChHHHHHHHHHh
Q 010799          477 SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       477 ~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      .-..+.+.+++.+++.+.+.+.
T Consensus       157 RC~~~~~~~~~~~~~~~~L~~~  178 (325)
T PRK06871        157 RCQTWLIHPPEEQQALDWLQAQ  178 (325)
T ss_pred             hceEEeCCCCCHHHHHHHHHHH
Confidence            5678999999999999888764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.36  E-value=0.0019  Score=69.17  Aligned_cols=127  Identities=16%  Similarity=0.210  Sum_probs=80.7

Q ss_pred             HHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC-CCHHHHHHHHHHHhcCCCCc--Cc
Q 010799          143 NKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE-LERRELVTDILKQVGGSKVE--KQ  219 (501)
Q Consensus       143 ~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~-~~~~~l~~~i~~~~~~~~~~--~~  219 (501)
                      ..|++.|... .+.+.+.|..++|.|||||+-+...   ....=..+.|.+.... .+...+.+.++..++.-...  ++
T Consensus        25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~  100 (894)
T COG2909          25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE  100 (894)
T ss_pred             HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence            4566666644 3689999999999999999988862   1222346789998655 56788888888888732222  11


Q ss_pred             -c------------hHHHHHHHHcc--CCeEEEEEecCC---ChhHHHHHhhcCCCCCCCcEEEEEeccccc
Q 010799          220 -L------------DPQKKLRKLFT--ENRYLVVIINAR---TPDIWDILKYLFPNSSNGSRVILSFQEADA  273 (501)
Q Consensus       220 -~------------~~~~~l~~~l~--~kr~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~iivTtr~~~v  273 (501)
                       .            .+...|..-|.  .+...+||||--   +...-..+...+.....+-..|||||+.--
T Consensus       101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~  172 (894)
T COG2909         101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ  172 (894)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence             0            12223333332  357899999953   333234444444444457789999998653

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.34  E-value=0.0017  Score=68.00  Aligned_cols=46  Identities=13%  Similarity=-0.055  Sum_probs=37.7

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus        15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk   60 (509)
T PRK14958         15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK   60 (509)
T ss_pred             HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence            4679999999999999997653 234567899999999999988864

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=97.34  E-value=0.00046  Score=59.28  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=62.6

Q ss_pred             eecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc-ccCCccceeEEEEeCCCCChHHHHHHHHHHhc
Q 010799          326 VSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT-KKNFPCRAWANVYVSQDFDMRSVFADILRQLT  404 (501)
Q Consensus       326 vGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~  404 (501)
                      ||....++++.+.+..-......|.|+|.+|+||+++|+.++..... ...|...     ++....      .+++..  
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~-----~~~~~~------~~~l~~--   67 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI-----DCASLP------AELLEQ--   67 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC-----CHHCTC------HHHHHH--
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe-----chhhCc------HHHHHH--
Confidence            57788888888877543344568899999999999999987763211 1122211     111110      111111  


Q ss_pred             cCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          405 QDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                                          .  +.-.|+|+|++.  ...+..+...+... .....|+|.||+..
T Consensus        68 --------------------a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~-~~~~~RlI~ss~~~  110 (138)
T PF14532_consen   68 --------------------A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQ-ERSNVRLIASSSQD  110 (138)
T ss_dssp             --------------------C--TTSEEEEECGCCS-HHHHHHHHHHHHHC-TTTTSEEEEEECC-
T ss_pred             --------------------c--CCCEEEECChHHCCHHHHHHHHHHHHhc-CCCCeEEEEEeCCC
Confidence                                1  233577899886  44556666666541 35678999998754

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.32  E-value=0.00076  Score=68.10  Aligned_cols=48  Identities=10%  Similarity=0.001  Sum_probs=37.7

Q ss_pred             ccccccchhhHHHHHHHHhcC--C---------CCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRS--H---------SSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~--~---------~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..++.|+++.+++|.+.+...  .         ...+-+.++|++|+|||+||+.+++.
T Consensus       121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~  179 (364)
T TIGR01242       121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE  179 (364)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999998877421  1         12445889999999999999999863

Many proteins may score above the trusted cutoff because an internal

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.31  E-value=0.001  Score=61.00  Aligned_cols=113  Identities=14%  Similarity=0.190  Sum_probs=65.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH-HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR-SVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      ..+.|.|+.|+||||++..+..  .........++  . +..+.... .-...+..+-.     ...+.....+.++..+
T Consensus         2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~--t-~e~~~E~~~~~~~~~i~q~~-----vg~~~~~~~~~i~~aL   71 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHIL--T-IEDPIEFVHESKRSLINQRE-----VGLDTLSFENALKAAL   71 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEE--E-EcCCccccccCccceeeecc-----cCCCccCHHHHHHHHh
Confidence            4789999999999999988777  34333333333  2 11111100 00000110100     0112234566777778


Q ss_pred             CCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          426 YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       426 ~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      ...+=+|++|++.+.+.+.......     ..|..++.|+........+
T Consensus        72 r~~pd~ii~gEird~e~~~~~l~~a-----~~G~~v~~t~Ha~~~~~~~  115 (198)
T cd01131          72 RQDPDVILVGEMRDLETIRLALTAA-----ETGHLVMSTLHTNSAAKTI  115 (198)
T ss_pred             cCCcCEEEEcCCCCHHHHHHHHHHH-----HcCCEEEEEecCCcHHHHH
Confidence            7777899999998876665554433     2366688888877655443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.30  E-value=0.0021  Score=67.03  Aligned_cols=46  Identities=11%  Similarity=-0.049  Sum_probs=37.5

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus        20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk   65 (507)
T PRK06645         20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAK   65 (507)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999888776542 235677899999999999999975

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=97.30  E-value=0.0033  Score=62.97  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=46.6

Q ss_pred             eEEEEEcCCCCh--------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh----hcCC-CCcceeCCCCChHHHHHHH
Q 010799          429 RYLVVLDDVHSP--------GAWYDLKRIFSPQASPIGSRVILITREAYVAR----SFSP-SIFLHQLRPLNEEESGKLF  495 (501)
Q Consensus       429 r~LlVlDnv~~~--------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~----~~~~-~~~~~~l~~L~~~ea~~Lf  495 (501)
                      +-+|||||+...        +.+.++...+-.   +.=.+||++|-+.....    .+.. ..+.+.|.-.+.+-|.++.
T Consensus       149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~---~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV  225 (431)
T PF10443_consen  149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ---NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV  225 (431)
T ss_pred             CCEEEEcchhccCcccchHHHHHHHHHHHHHh---cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence            679999998652        112233333433   45678999887765444    3332 4568889999999999999


Q ss_pred             HHhhc
Q 010799          496 QRRLK  500 (501)
Q Consensus       496 ~~~~~  500 (501)
                      ..++.
T Consensus       226 ~~~L~  230 (431)
T PF10443_consen  226 LSQLD  230 (431)
T ss_pred             HHHhc
Confidence            88764

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=97.30  E-value=0.0019  Score=68.87  Aligned_cols=46  Identities=13%  Similarity=-0.010  Sum_probs=38.2

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus        15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk   60 (709)
T PRK08691         15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK   60 (709)
T ss_pred             HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999998653 235678899999999999988864

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.29  E-value=0.00064  Score=66.49  Aligned_cols=97  Identities=19%  Similarity=0.140  Sum_probs=61.2

Q ss_pred             HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799          334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV----  408 (501)
Q Consensus       334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~----  408 (501)
                      .|..+|. .+=++-+++-|+|++|+|||+||.+++.  .....-..++|  ++..+..+..     .+..++.+..    
T Consensus        42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vy--Id~E~~~~~~-----~a~~lGvd~~~l~v  112 (325)
T cd00983          42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAF--IDAEHALDPV-----YAKKLGVDLDNLLI  112 (325)
T ss_pred             HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEE--ECccccHHHH-----HHHHcCCCHHHhee
Confidence            3444553 3335568999999999999999999876  33333455677  7765554432     3333333211    


Q ss_pred             CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          409 DEESSLDDLESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       409 ~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                      .+..+.++....+...+.. ..-+||+|.+..
T Consensus       113 ~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaa  144 (325)
T cd00983         113 SQPDTGEQALEIADSLVRSGAVDLIVVDSVAA  144 (325)
T ss_pred             cCCCCHHHHHHHHHHHHhccCCCEEEEcchHh
Confidence            1344566777777766654 456899999753

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.29  E-value=0.0021  Score=66.75  Aligned_cols=46  Identities=9%  Similarity=-0.031  Sum_probs=36.4

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+.....|.+.+..+. -.+.+-++|++|+||||+|+.+.+
T Consensus        13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~   58 (472)
T PRK14962         13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK   58 (472)
T ss_pred             HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4679999888888887776542 234578899999999999999865

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.29  E-value=0.0016  Score=57.15  Aligned_cols=38  Identities=29%  Similarity=0.312  Sum_probs=27.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ++.|+|++|+|||+++..++.  .....-..++|  ++....
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~--~~~e~~   38 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVY--VDIEEE   38 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEE--EECCcc
Confidence            368999999999999999987  44333345666  665433

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0061  Score=56.15  Aligned_cols=152  Identities=13%  Similarity=0.149  Sum_probs=80.5

Q ss_pred             ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..++-|.+-..+++.+...-           +-+.++-|.++|++|+|||-||+.+++  .....|       +.+... 
T Consensus       154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~--~t~a~f-------irvvgs-  223 (408)
T KOG0727|consen  154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN--HTTAAF-------IRVVGS-  223 (408)
T ss_pred             ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhh--ccchhe-------eeeccH-
Confidence            35567777666666555421           225668899999999999999999999  444444       443221 


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hh---HHHHHHhcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GA---WYDLKRIFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~---~~~l~~~l~~~~  454 (501)
                             ++.....+..+      .-..+.++-.-.+-+-+|++|+++..             +.   +-+++....-+.
T Consensus       224 -------efvqkylgegp------rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd  290 (408)
T KOG0727|consen  224 -------EFVQKYLGEGP------RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD  290 (408)
T ss_pred             -------HHHHHHhccCc------HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC
Confidence                   22222223222      11222222223345788999998751             11   122333333222


Q ss_pred             CCCCCEEEEEeCCh-HHHhhc-C--CCCcceeCCCCChHHHHHHHH
Q 010799          455 SPIGSRVILITREA-YVARSF-S--PSIFLHQLRPLNEEESGKLFQ  496 (501)
Q Consensus       455 ~~~~~~iIiTtR~~-~~~~~~-~--~~~~~~~l~~L~~~ea~~Lf~  496 (501)
                      ...+.++|..|-.. .+...+ .  .-...++.+..+..+-+-.|.
T Consensus       291 q~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~  336 (408)
T KOG0727|consen  291 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS  336 (408)
T ss_pred             cccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHH
Confidence            34567888866433 222211 1  134456666444444444443

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.28  E-value=0.0012  Score=61.90  Aligned_cols=126  Identities=17%  Similarity=0.181  Sum_probs=79.2

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeE--EEEeCCCCChHHHHHHHHHHhccCCCC------CCCCHHHH
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWA--NVYVSQDFDMRSVFADILRQLTQDEVD------EESSLDDL  417 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~--~v~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~  417 (501)
                      -.+++|+|.+|+||||+++.+..  -.......+.|+  ++.--......+...+++..++.....      +-+.-+..
T Consensus        39 ge~~glVGESG~GKSTlgr~i~~--L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ  116 (268)
T COG4608          39 GETLGLVGESGCGKSTLGRLILG--LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ  116 (268)
T ss_pred             CCEEEEEecCCCCHHHHHHHHHc--CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence            36999999999999999999988  444444444441  011011122334455566655543211      23344445


Q ss_pred             HHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCC
Q 010799          418 ESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAYVARSFSP  476 (501)
Q Consensus       418 ~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~  476 (501)
                      .-.+.+.|.-++-++|.|+.-+.      .+.-.|+..+..   ..|...|+.|.+-.+...++.
T Consensus       117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~---~~~lt~lFIsHDL~vv~~isd  178 (268)
T COG4608         117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE---ELGLTYLFISHDLSVVRYISD  178 (268)
T ss_pred             hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH---HhCCeEEEEEEEHHhhhhhcc
Confidence            55677777888999999997652      333344444443   557889999999988888774

>PRK06921 hypothetical protein; Provisional

Probab=97.28  E-value=0.001  Score=63.74  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=26.7

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccC-Ccccee
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKN-FPCRAW  381 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~~~~w  381 (501)
                      ....+.++|.+|+|||.||..+++  .+... ...++|
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y  151 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLY  151 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEE
Confidence            346899999999999999999998  54443 333455

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.28  E-value=0.00068  Score=65.06  Aligned_cols=46  Identities=9%  Similarity=0.086  Sum_probs=31.6

Q ss_pred             cccccchhhHHHHHH---HHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLAD---FLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~---~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++|.+..+..|.+   ++..          ..+....+.++|.+|+||||+|+.+.+
T Consensus         6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~   64 (261)
T TIGR02881         6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK   64 (261)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence            357787766665543   3311          123456678899999999999999974

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK04296 thymidine kinase; Provisional

Probab=97.27  E-value=0.00055  Score=62.25  Aligned_cols=112  Identities=17%  Similarity=0.037  Sum_probs=64.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHhc
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-EESSLDDLESEFTGIL  425 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l  425 (501)
                      .++.++|+.|.||||++..++.  +...+-..+..  +.  ...+.......++.+++..... .....+++...+.+ .
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i--~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~   75 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLV--FK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-E   75 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEE--Ee--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence            4788999999999999998887  44333333333  32  1111122223344454432211 11234555666655 3


Q ss_pred             CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799          426 YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREAY  469 (501)
Q Consensus       426 ~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~~  469 (501)
                      .++.-+||+|+++-.  +++.++...+.    ..|..||+|.++..
T Consensus        76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~----~~g~~vi~tgl~~~  117 (190)
T PRK04296         76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD----DLGIPVICYGLDTD  117 (190)
T ss_pred             CCCCCEEEEEccccCCHHHHHHHHHHHH----HcCCeEEEEecCcc
Confidence            334458999999763  33455555433    34889999999843

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.27  E-value=0.0024  Score=68.07  Aligned_cols=45  Identities=13%  Similarity=0.002  Sum_probs=36.8

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ..+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.
T Consensus        15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lA   59 (618)
T PRK14951         15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILA   59 (618)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHH
Confidence            4678999998999999888653 23566889999999999998884

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.27  E-value=0.00047  Score=67.38  Aligned_cols=120  Identities=11%  Similarity=0.151  Sum_probs=65.1

Q ss_pred             ecchhHHHHHHHhhcCC--CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc
Q 010799          327 SMENDILKLAKLTLNSS--DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT  404 (501)
Q Consensus       327 GR~~~~~~l~~~L~~~~--~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~  404 (501)
                      +|........+++..-.  ....-+.|+|+.|+|||.||..+++  .....-..+.+  ++++      .++.++.....
T Consensus       135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~--~~~~------~l~~~lk~~~~  204 (306)
T PRK08939        135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTL--LHFP------EFIRELKNSIS  204 (306)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEE--EEHH------HHHHHHHHHHh
Confidence            34444444455553211  2346899999999999999999999  44333233455  4432      34444444332


Q ss_pred             cCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHH--HHHHhcCCCCCCCCCEEEEEeCC
Q 010799          405 QDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWY--DLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~--~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                      ..      +..+.++.    + .+.=||||||+..  ...|.  .++..+...+...+..+|+||-.
T Consensus       205 ~~------~~~~~l~~----l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl  260 (306)
T PRK08939        205 DG------SVKEKIDA----V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF  260 (306)
T ss_pred             cC------cHHHHHHH----h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence            11      12222222    2 2345899999864  34443  34443322102346678888864

>PRK10536 hypothetical protein; Provisional

Probab=97.27  E-value=0.0016  Score=61.19  Aligned_cols=132  Identities=11%  Similarity=-0.035  Sum_probs=74.6

Q ss_pred             ccccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEE--c--CC-----CCCH
Q 010799          130 AKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVP--V--PE-----ELER  200 (501)
Q Consensus       130 ~~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~--v--s~-----~~~~  200 (501)
                      .....+.++......++.+|..    ..++.+.|.+|+|||+||.....+.-..+.|+..+-+.  +  .+     +-+.
T Consensus        52 ~~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~  127 (262)
T PRK10536         52 RDTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI  127 (262)
T ss_pred             cCCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence            3345677889999999998865    24889999999999999988775322233344333221  0  10     0122


Q ss_pred             HHH----HHHHHHHhcCCCCcCcchHHHH-----------HHHHccCCeE---EEEEecCCChhHHHHHhhcCCCCCCCc
Q 010799          201 REL----VTDILKQVGGSKVEKQLDPQKK-----------LRKLFTENRY---LVVIINARTPDIWDILKYLFPNSSNGS  262 (501)
Q Consensus       201 ~~l----~~~i~~~~~~~~~~~~~~~~~~-----------l~~~l~~kr~---LlVlDdv~~~~~~~~l~~~~~~~~~gs  262 (501)
                      .+-    +..+...+..-...  ......           -..+++|+.+   +||+|+..+... .++...+..-+.+|
T Consensus       128 ~eK~~p~~~pi~D~L~~~~~~--~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~s  204 (262)
T PRK10536        128 AEKFAPYFRPVYDVLVRRLGA--SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENV  204 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh--HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCC
Confidence            221    22222222110000  001111           1235677665   999999877544 44555555556799


Q ss_pred             EEEEEe
Q 010799          263 RVILSF  268 (501)
Q Consensus       263 ~iivTt  268 (501)
                      ++|+|=
T Consensus       205 k~v~~G  210 (262)
T PRK10536        205 TVIVNG  210 (262)
T ss_pred             EEEEeC
Confidence            998874

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.27  E-value=0.00071  Score=62.57  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=55.4

Q ss_pred             hhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHh-c---cCC-CCCCCC
Q 010799          339 TLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL-T---QDE-VDEESS  413 (501)
Q Consensus       339 L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l-~---~~~-~~~~~~  413 (501)
                      |..+=..-+++.|+|++|+|||+++.+++.  .....-..++|  ++... .+...+.+ ++... .   ... .....+
T Consensus         5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~y--i~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~   78 (209)
T TIGR02237         5 LGGGVERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVY--IDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFD   78 (209)
T ss_pred             hcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEE--EECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCC
Confidence            433334558999999999999999999887  33333456788  77754 44444333 33221 0   000 001122


Q ss_pred             HHH---HHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          414 LDD---LESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       414 ~~~---~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                      ..+   ....+.+.+.. +.-+||+|.+..
T Consensus        79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis~  108 (209)
T TIGR02237        79 FDEQGVAIQKTSKFIDRDSASLVVVDSFTA  108 (209)
T ss_pred             HHHHHHHHHHHHHHHhhcCccEEEEeCcHH
Confidence            222   35555555544 456999999864

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.26  E-value=0.0018  Score=60.09  Aligned_cols=127  Identities=9%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             cccccccccccccccchhhHHHHHHHHhc--CCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH
Q 010799          123 SAENVDSAKKTGILDLNKEVNKLADFLIR--SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER  200 (501)
Q Consensus       123 ~~~~~~~~~~~~~vg~~~~~~~l~~~L~~--~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~  200 (501)
                      +...+++.....++|.+..++.|++=-..  .+....-+-+||..|+|||+|++.+.+.-.-..   .+ -|-|++. + 
T Consensus        17 ~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~-~-   90 (249)
T PF05673_consen   17 PIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE-D-   90 (249)
T ss_pred             ecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH-H-
Confidence            33444555568899999999887764331  112344566799999999999999985322111   11 1222221 0 


Q ss_pred             HHHHHHHHHHhcCCCCcCcchHHHHHHHHc--cCCeEEEEEecCC---ChhHHHHHhhcCCCC---CC-CcEEEEEeccc
Q 010799          201 RELVTDILKQVGGSKVEKQLDPQKKLRKLF--TENRYLVVIINAR---TPDIWDILKYLFPNS---SN-GSRVILSFQEA  271 (501)
Q Consensus       201 ~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~---~~~~~~~l~~~~~~~---~~-gs~iivTtr~~  271 (501)
                                         ......|...|  +..||+|.+||+.   +...+..|++.+..+   .+ .-.|..||-..
T Consensus        91 -------------------L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR  151 (249)
T PF05673_consen   91 -------------------LGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR  151 (249)
T ss_pred             -------------------hccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence                               00122333333  3578999999984   345577777776532   22 33344555444


Q ss_pred             cch
Q 010799          272 DAA  274 (501)
Q Consensus       272 ~va  274 (501)
                      +..
T Consensus       152 HLv  154 (249)
T PF05673_consen  152 HLV  154 (249)
T ss_pred             hcc
Confidence            443

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.26  E-value=0.00013  Score=62.74  Aligned_cols=86  Identities=17%  Similarity=0.272  Sum_probs=45.6

Q ss_pred             EEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCc
Q 010799          349 ISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEK  428 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~  428 (501)
                      |.|+|++|+|||+||+.++.  .....+   .-  +.++...+..+++...--. ..........   +...+.     +
T Consensus         2 vlL~G~~G~GKt~l~~~la~--~~~~~~---~~--i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~---l~~a~~-----~   65 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAA--LLGRPV---IR--INCSSDTTEEDLIGSYDPS-NGQFEFKDGP---LVRAMR-----K   65 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHH--HHTCEE---EE--EE-TTTSTHHHHHCEEET--TTTTCEEE-C---CCTTHH-----E
T ss_pred             EEEECCCCCCHHHHHHHHHH--Hhhcce---EE--EEeccccccccceeeeeec-cccccccccc---cccccc-----c
Confidence            68999999999999999988  442221   12  5666666655543322111 0000000000   000111     7


Q ss_pred             eEEEEEcCCCC--hhhHHHHHHhc
Q 010799          429 RYLVVLDDVHS--PGAWYDLKRIF  450 (501)
Q Consensus       429 r~LlVlDnv~~--~~~~~~l~~~l  450 (501)
                      ..+++||+++.  .+.+..|...+
T Consensus        66 ~~il~lDEin~a~~~v~~~L~~ll   89 (139)
T PF07728_consen   66 GGILVLDEINRAPPEVLESLLSLL   89 (139)
T ss_dssp             EEEEEESSCGG--HHHHHTTHHHH
T ss_pred             eeEEEECCcccCCHHHHHHHHHHH
Confidence            89999999984  34444444433

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PHA00729 NTP-binding motif containing protein

Probab=97.26  E-value=0.0013  Score=60.67  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.5

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+.|+|.+|+|||+||..+++
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~   39 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVAR   39 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999999988

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.002  Score=65.27  Aligned_cols=127  Identities=21%  Similarity=0.227  Sum_probs=75.0

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG  423 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~  423 (501)
                      .....+.+.|++|+|||+||..++.    ...|+.     |.+-++.++.                 ..+...-...++.
T Consensus       536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPF-----vKiiSpe~mi-----------------G~sEsaKc~~i~k  589 (744)
T KOG0741|consen  536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPF-----VKIISPEDMI-----------------GLSESAKCAHIKK  589 (744)
T ss_pred             CcceEEEEecCCCCChHHHHHHHHh----hcCCCe-----EEEeChHHcc-----------------CccHHHHHHHHHH
Confidence            3456889999999999999999887    455654     4443322211                 1111222223333


Q ss_pred             h----cCCceEEEEEcCCCChhhH------------HHHHHhcCCCCCCCCCE--EEEEeCChHHHhhcCC---CCccee
Q 010799          424 I----LYEKRYLVVLDDVHSPGAW------------YDLKRIFSPQASPIGSR--VILITREAYVARSFSP---SIFLHQ  482 (501)
Q Consensus       424 ~----l~~~r~LlVlDnv~~~~~~------------~~l~~~l~~~~~~~~~~--iIiTtR~~~~~~~~~~---~~~~~~  482 (501)
                      .    -++.--.||+||++..-+|            ..|.-.|... ...|-+  |+-||....+...|+-   -...|.
T Consensus       590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~-ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~  668 (744)
T KOG0741|consen  590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQ-PPKGRKLLIFGTTSRREVLQEMGILDCFSSTIH  668 (744)
T ss_pred             HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccC-CCCCceEEEEecccHHHHHHHcCHHHhhhheee
Confidence            3    3344568999999875443            2333334431 222333  4447777788877764   456888


Q ss_pred             CCCCCh-HHHHHHHHH
Q 010799          483 LRPLNE-EESGKLFQR  497 (501)
Q Consensus       483 l~~L~~-~ea~~Lf~~  497 (501)
                      |+.++. ++..+.++.
T Consensus       669 Vpnl~~~~~~~~vl~~  684 (744)
T KOG0741|consen  669 VPNLTTGEQLLEVLEE  684 (744)
T ss_pred             cCccCchHHHHHHHHH
Confidence            888887 666665543

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=97.25  E-value=0.008  Score=59.54  Aligned_cols=69  Identities=13%  Similarity=0.137  Sum_probs=51.9

Q ss_pred             ceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          428 KRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYVARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       428 ~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +.-++|+|+++.  ....+.|+..+-.  .++++.+|++|.+ ..+...+.+.-..+.+.+++.++..+.+.+.
T Consensus       132 ~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~  203 (342)
T PRK06964        132 GARVVVLYPAEALNVAAANALLKTLEE--PPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ  203 (342)
T ss_pred             CceEEEEechhhcCHHHHHHHHHHhcC--CCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence            355888999986  5667889999888  7778877766665 4455454445578999999999999888653

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=97.25  E-value=0.0029  Score=62.71  Aligned_cols=158  Identities=13%  Similarity=0.084  Sum_probs=82.9

Q ss_pred             eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc
Q 010799          325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT  404 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~  404 (501)
                      ++|....+.++.+.+..-.....-|.|+|.+|+||+++|+.+.....  ..-...+-  |+|....  ...+...   +.
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~--r~~~pfv~--vnc~~~~--~~~l~~~---lf   71 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK--RWQGPLVK--LNCAALS--ENLLDSE---LF   71 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC--ccCCCeEE--EeCCCCC--hHHHHHH---Hh
Confidence            47888888888887755444456789999999999999998876221  11112223  5554322  1222221   11


Q ss_pred             cCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCChH---
Q 010799          405 QDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREAY---  469 (501)
Q Consensus       405 ~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~~---  469 (501)
                      +.... ......   .....+-....=.|+||+++.  ...+..|+..+....         .....+||.||....   
T Consensus        72 G~~~g~~~ga~~---~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~  148 (329)
T TIGR02974        72 GHEAGAFTGAQK---RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPAL  148 (329)
T ss_pred             ccccccccCccc---ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHH
Confidence            11100 000000   000001112234689999986  455666666654410         012358888775332   


Q ss_pred             ---------HHhhcCCCCcceeCCCCC--hHHHHHHHH
Q 010799          470 ---------VARSFSPSIFLHQLRPLN--EEESGKLFQ  496 (501)
Q Consensus       470 ---------~~~~~~~~~~~~~l~~L~--~~ea~~Lf~  496 (501)
                               +...+  ....+.++||.  .+|--.|+.
T Consensus       149 ~~~g~fr~dL~~rl--~~~~i~lPpLReR~eDI~~L~~  184 (329)
T TIGR02974       149 AAEGRFRADLLDRL--AFDVITLPPLRERQEDIMLLAE  184 (329)
T ss_pred             hhcCchHHHHHHHh--cchhcCCCchhhhhhhHHHHHH
Confidence                     11111  35678999998  456555543

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=97.25  E-value=0.0074  Score=59.23  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=86.3

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc---c--ceeEEEEeCCCCChHHHHHHHHHHhcc
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP---C--RAWANVYVSQDFDMRSVFADILRQLTQ  405 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~---~--~~w~~v~~~~~~~~~~~~~~i~~~l~~  405 (501)
                      ..+.|...+.. +.-++.+.++|+.|+||+++|..++...-......   |  .-|  +...+.+|+.-+.      ...
T Consensus        12 ~~~~l~~~~~~-~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~--~~~g~HPD~~~i~------~~p   82 (319)
T PRK08769         12 AYDQTVAALDA-GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQL--IAAGTHPDLQLVS------FIP   82 (319)
T ss_pred             HHHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHH--HhcCCCCCEEEEe------cCC
Confidence            34555555533 23345799999999999999998876432111110   0  001  1111111111000      000


Q ss_pred             CCCC----CCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHhh
Q 010799          406 DEVD----EESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITRE-AYVARS  473 (501)
Q Consensus       406 ~~~~----~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~~  473 (501)
                      ....    .....+ .+..+.+.+.     +.+-++|||+++.  ....+.|+..+-.  ...++.+|++|.+ ..+...
T Consensus        83 ~~~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpT  159 (319)
T PRK08769         83 NRTGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE--PSPGRYLWLISAQPARLPAT  159 (319)
T ss_pred             CcccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchH
Confidence            0000    001122 2223333332     3456899999986  4567888888888  6778877777765 344445


Q ss_pred             cCCCCcceeCCCCChHHHHHHHHH
Q 010799          474 FSPSIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       474 ~~~~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                      +.+.-..+.+.+++.+++.+.+.+
T Consensus       160 IrSRCq~i~~~~~~~~~~~~~L~~  183 (319)
T PRK08769        160 IRSRCQRLEFKLPPAHEALAWLLA  183 (319)
T ss_pred             HHhhheEeeCCCcCHHHHHHHHHH
Confidence            444566889999999999887764

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.25  E-value=0.0025  Score=65.04  Aligned_cols=46  Identities=11%  Similarity=-0.078  Sum_probs=36.6

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus        15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~   60 (397)
T PRK14955         15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK   60 (397)
T ss_pred             HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999998888887542 234577899999999999988764

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.24  E-value=0.0029  Score=64.10  Aligned_cols=45  Identities=9%  Similarity=-0.035  Sum_probs=36.3

Q ss_pred             cccccchhhHHHHHHHHhcCCC--------CeeEEEEEeeCChhhHHHHhhhh
Q 010799          133 TGILDLNKEVNKLADFLIRSHS--------SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~--------~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .+++|.+..++.|.+.+..+..        -.+-+-++|++|+||||+|+.+.
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA   57 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFA   57 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHH
Confidence            4688999999999999986421        23557789999999999998875

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.24  E-value=0.0033  Score=66.35  Aligned_cols=46  Identities=13%  Similarity=-0.007  Sum_probs=37.3

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+..
T Consensus        15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk   60 (527)
T PRK14969         15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK   60 (527)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999998643 234567899999999999988853

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=97.24  E-value=0.00099  Score=59.17  Aligned_cols=44  Identities=16%  Similarity=0.384  Sum_probs=33.5

Q ss_pred             eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++|.+..+.++.+.+..-......|.|+|..|+||+.+|+.+.+
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~   44 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN   44 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence            46888888888888755444447888999999999999999887

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>TIGR02012 tigrfam_recA protein RecA

Probab=97.24  E-value=0.00085  Score=65.57  Aligned_cols=97  Identities=18%  Similarity=0.149  Sum_probs=60.6

Q ss_pred             HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799          334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV----  408 (501)
Q Consensus       334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~----  408 (501)
                      .|..+|. .+=++-+++.|+|++|+|||+||.+++.  .....-..++|  ++..+..+..     .+..++.+..    
T Consensus        42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~y--Id~E~~~~~~-----~a~~lGvd~~~l~v  112 (321)
T TIGR02012        42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAF--IDAEHALDPV-----YARKLGVDIDNLLV  112 (321)
T ss_pred             HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--EcccchhHHH-----HHHHcCCCHHHeEE
Confidence            3444453 3445568999999999999999999877  33333345667  7665544432     2334433211    


Q ss_pred             CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          409 DEESSLDDLESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       409 ~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                      .+..+.++....+...+.. ..-+||+|.+..
T Consensus       113 ~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~a  144 (321)
T TIGR02012       113 SQPDTGEQALEIAETLVRSGAVDIIVVDSVAA  144 (321)
T ss_pred             ecCCCHHHHHHHHHHHhhccCCcEEEEcchhh
Confidence            1344566677777666654 466999999764

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>CHL00181 cbbX CbbX; Provisional

Probab=97.24  E-value=0.0014  Score=63.52  Aligned_cols=104  Identities=20%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL  236 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L  236 (501)
                      ..+.++|.+|+||||+|+.+.........-...-|+.++    ...+.    ..+.+..   .......+.+. .+  -+
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~----~~~~g~~---~~~~~~~l~~a-~g--gV  125 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLV----GQYIGHT---APKTKEVLKKA-MG--GV  125 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHH----HHHhccc---hHHHHHHHHHc-cC--CE
Confidence            347789999999999999996421111111112245554    22222    2221111   11112223322 23  38


Q ss_pred             EEEecCCC-----------hhHHHHHhhcCCCCCCCcEEEEEeccccch
Q 010799          237 VVIINART-----------PDIWDILKYLFPNSSNGSRVILSFQEADAA  274 (501)
Q Consensus       237 lVlDdv~~-----------~~~~~~l~~~~~~~~~gs~iivTtr~~~va  274 (501)
                      |+||++..           .+.-+.|...+.+...+.+||.++....+.
T Consensus       126 LfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~  174 (287)
T CHL00181        126 LFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD  174 (287)
T ss_pred             EEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence            89999853           223344555555555566777777655443

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.23  E-value=0.0029  Score=67.65  Aligned_cols=213  Identities=13%  Similarity=0.095  Sum_probs=0.0

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccccccceeEEE-------EcCCCCCH------------------------------
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWV-------PVPEELER------------------------------  200 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv-------~vs~~~~~------------------------------  200 (501)
                      +++|+|..|+|||||.+.+.   .........+.+       .+++.+..                              
T Consensus        35 ~~~iiG~NGsGKSTLlk~i~---G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~  111 (556)
T PRK11819         35 KIGVLGLNGAGKSTLLRIMA---GVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAA  111 (556)
T ss_pred             EEEEECCCCCCHHHHHHHHh---CCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHH


Q ss_pred             ------------------------------HHHHHHHHHHhcCCCCcCcch-------HHHHHHHHccCCeEEEEEecCC
Q 010799          201 ------------------------------RELVTDILKQVGGSKVEKQLD-------PQKKLRKLFTENRYLVVIINAR  243 (501)
Q Consensus       201 ------------------------------~~l~~~i~~~~~~~~~~~~~~-------~~~~l~~~l~~kr~LlVlDdv~  243 (501)
                                                    .+-...+++.++.........       -.-.|...|-.+.-+|+||+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt  191 (556)
T PRK11819        112 YAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPT  191 (556)
T ss_pred             hccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCC


Q ss_pred             C---hhHHHHHhhcCCCCCCCcEEEEEeccccchh--cccCCCCCCCccc------------------------------
Q 010799          244 T---PDIWDILKYLFPNSSNGSRVILSFQEADAAR--CRNMSFFGGESSF------------------------------  288 (501)
Q Consensus       244 ~---~~~~~~l~~~~~~~~~gs~iivTtr~~~va~--~~~~~~l~~~~~~------------------------------  288 (501)
                      +   ...-..+...+..-. + .||++|.+.+.+.  +...-.+......                              
T Consensus       192 ~~LD~~~~~~l~~~L~~~~-~-tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (556)
T PRK11819        192 NHLDAESVAWLEQFLHDYP-G-TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQKA  269 (556)
T ss_pred             CcCChHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             ---------------------------CcceeeeccccCCCCCCCCCCCCCCCCccccccccceeecchhHHHHHHHhhc
Q 010799          289 ---------------------------KPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLN  341 (501)
Q Consensus       289 ---------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~fvGR~~~~~~l~~~L~~  341 (501)
                                                 +.................+..+..-...--......-+|....++.+.=-+..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~  349 (556)
T PRK11819        270 LKRELEWVRQSPKARQAKSKARLARYEELLSEEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPP  349 (556)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccccccCCCceeecCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcC


Q ss_pred             CCCCceEEEEEecCCCChHHHHHHHHcccccccCCcccee
Q 010799          342 SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW  381 (501)
Q Consensus       342 ~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w  381 (501)
                      +.    +++|.|+.|+|||||.+.++.  .....-..+.|
T Consensus       350 Ge----~~~l~G~NGsGKSTLl~~i~G--~~~p~~G~i~~  383 (556)
T PRK11819        350 GG----IVGIIGPNGAGKSTLFKMITG--QEQPDSGTIKI  383 (556)
T ss_pred             CC----EEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEE

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=97.22  E-value=0.0081  Score=59.55  Aligned_cols=155  Identities=18%  Similarity=0.210  Sum_probs=89.7

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC---cc-ce----eEEEEeCCCCChHHHHHHHHH
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PC-RA----WANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~-~~----w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ...+.|.+.+.. +.-++-..++|+.|+||+++|..++...--.+.-   .| .+    +  +.....+|+..+      
T Consensus         9 ~~~~~l~~~~~~-~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~--~~~g~HPD~~~i------   79 (334)
T PRK07993          9 PDYEQLVGSYQA-GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQL--MQAGTHPDYYTL------   79 (334)
T ss_pred             HHHHHHHHHHHc-CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCCCCEEEE------
Confidence            345566666643 2344688899999999999999987643111110   01 00    1  111112221110      


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhh
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARS  473 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~  473 (501)
                        ...........+++.. +.+.+.     +.+-++|+|+++.  ....+.|+..+-.  .+.++..|++|.+. .+...
T Consensus        80 --~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpT  154 (334)
T PRK07993         80 --TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE--PPENTWFFLACREPARLLAT  154 (334)
T ss_pred             --ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHH
Confidence              0000000122333332 333332     3566899999986  5667889999998  77777777777664 35545


Q ss_pred             cCCCCcceeCCCCChHHHHHHHHHh
Q 010799          474 FSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       474 ~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +.|.-..+.+.+++.+++.+.+...
T Consensus       155 IrSRCq~~~~~~~~~~~~~~~L~~~  179 (334)
T PRK07993        155 LRSRCRLHYLAPPPEQYALTWLSRE  179 (334)
T ss_pred             HHhccccccCCCCCHHHHHHHHHHc
Confidence            4445567899999999998877653

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.22  E-value=0.0046  Score=54.72  Aligned_cols=62  Identities=13%  Similarity=0.305  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHhcCCceEEEEEcCC----CChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          412 SSLDDLESEFTGILYEKRYLVVLDDV----HSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       412 ~~~~~~~~~l~~~l~~~r~LlVlDnv----~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +.-++..-.+.+.+-+++-||+-|+-    +....|+ +...|... +..|+.||++|.+..+...+.
T Consensus       139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lfeei-nr~GtTVl~ATHd~~lv~~~~  204 (223)
T COG2884         139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLFEEI-NRLGTTVLMATHDLELVNRMR  204 (223)
T ss_pred             CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHHHHH-hhcCcEEEEEeccHHHHHhcc
Confidence            33444555666667788889998873    3333333 33333332 456999999999999988876

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.21  E-value=0.00095  Score=56.42  Aligned_cols=22  Identities=18%  Similarity=-0.064  Sum_probs=19.2

Q ss_pred             EEEEeeCChhhHHHHhhhhccc
Q 010799          159 ISVVDVAGSVMTTDLWKSYECE  180 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~~  180 (501)
                      |-|+|.+|+||||+|+.+.+.-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            5689999999999999999643

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR01817 nifA Nif-specific regulatory protein

Probab=97.21  E-value=0.004  Score=66.27  Aligned_cols=164  Identities=14%  Similarity=0.143  Sum_probs=87.3

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ....++|....+.++.+.+..-......|.|+|.+|+|||++|+.+.+..  ...-...+.  ++|..-..  ..+..  
T Consensus       194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s--~r~~~pfv~--i~c~~~~~--~~~~~--  265 (534)
T TIGR01817       194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS--PRAKRPFVK--VNCAALSE--TLLES--  265 (534)
T ss_pred             ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEE--eecCCCCH--HHHHH--
Confidence            34679999999999998885544445678999999999999999987732  111112233  55543321  22221  


Q ss_pred             HHhccCCCCC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCC---------CCCCEEEEEeCCh
Q 010799          401 RQLTQDEVDE-ESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQAS---------PIGSRVILITREA  468 (501)
Q Consensus       401 ~~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~---------~~~~~iIiTtR~~  468 (501)
                       .+.+..... .....   .....+.....=.|+||+++.  ...+..|+..+.....         ....+||.||...
T Consensus       266 -~lfg~~~~~~~~~~~---~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~  341 (534)
T TIGR01817       266 -ELFGHEKGAFTGAIA---QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD  341 (534)
T ss_pred             -HHcCCCCCccCCCCc---CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence             221211100 00000   000001112234688999986  4556667666644100         0135788877543


Q ss_pred             HHHhhcCC----------CCcceeCCCCC--hHHHHHHHH
Q 010799          469 YVARSFSP----------SIFLHQLRPLN--EEESGKLFQ  496 (501)
Q Consensus       469 ~~~~~~~~----------~~~~~~l~~L~--~~ea~~Lf~  496 (501)
                      ........          ....+.++||.  .+|--.|+.
T Consensus       342 l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~  381 (534)
T TIGR01817       342 LEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAE  381 (534)
T ss_pred             HHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHH
Confidence            21110000          24578899998  455554443

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PF14516 AAA_35: AAA-like domain

Probab=97.20  E-value=0.011  Score=58.79  Aligned_cols=167  Identities=20%  Similarity=0.235  Sum_probs=91.6

Q ss_pred             ceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccc-cCCccceeEEEEeCC-----CCChHHHHH
Q 010799          324 AVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTK-KNFPCRAWANVYVSQ-----DFDMRSVFA  397 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~~~w~~v~~~~-----~~~~~~~~~  397 (501)
                      -.|.|...-+++.+.|.+.+   ..+.|.|+-.+|||+|..++.+  ... ..+.+ ++  +++..     ..+....+.
T Consensus        12 ~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~--~l~~~~~~~-v~--id~~~~~~~~~~~~~~f~~   83 (331)
T PF14516_consen   12 FYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLE--RLQQQGYRC-VY--IDLQQLGSAIFSDLEQFLR   83 (331)
T ss_pred             cccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHH--HHHHCCCEE-EE--EEeecCCCcccCCHHHHHH
Confidence            35788866667777775422   5999999999999999999887  333 34443 35  55432     124444444


Q ss_pred             ----HHHHHhccCCCC------CCCCHHHHHHHHHHhc-C--CceEEEEEcCCCCh-------hhHHHHHHhcCCCCC--
Q 010799          398 ----DILRQLTQDEVD------EESSLDDLESEFTGIL-Y--EKRYLVVLDDVHSP-------GAWYDLKRIFSPQAS--  455 (501)
Q Consensus       398 ----~i~~~l~~~~~~------~~~~~~~~~~~l~~~l-~--~~r~LlVlDnv~~~-------~~~~~l~~~l~~~~~--  455 (501)
                          .+..++......      ...+.......+.+++ .  +++.+|+||+++..       .++-.++..+...+.  
T Consensus        84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~  163 (331)
T PF14516_consen   84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN  163 (331)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence                444444433211      1123334444555543 2  57899999999862       122222222221000  


Q ss_pred             --CCCCEEEEEeCC-hHHHhhc-CC---CCcceeCCCCChHHHHHHHHHh
Q 010799          456 --PIGSRVILITRE-AYVARSF-SP---SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       456 --~~~~~iIiTtR~-~~~~~~~-~~---~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                        ...-+.++.... ....... .+   .+..+.|++++.+|...|+.++
T Consensus       164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~  213 (331)
T PF14516_consen  164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY  213 (331)
T ss_pred             cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh
Confidence              111223332211 1111111 11   4568999999999999998765

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0027  Score=66.88  Aligned_cols=155  Identities=17%  Similarity=0.150  Sum_probs=91.6

Q ss_pred             cceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799          323 TAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD  391 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~  391 (501)
                      .++.|.+...+.+.+.+..           +-...+.+.++|++|+|||.||+.+++  .....|       +.+... +
T Consensus       242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-------i~v~~~-~  311 (494)
T COG0464         242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-------ISVKGS-E  311 (494)
T ss_pred             ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-------EEeeCH-H
Confidence            4566666666655544321           113446899999999999999999999  445555       333221 1


Q ss_pred             hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCCC
Q 010799          392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPIG  458 (501)
Q Consensus       392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~~  458 (501)
                             +....      -..+...+...+....+..++.|++|+++..             .....++..+.......+
T Consensus       312 -------l~sk~------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~  378 (494)
T COG0464         312 -------LLSKW------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG  378 (494)
T ss_pred             -------Hhccc------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence                   11111      1223445555666666678999999998761             234445555543112233


Q ss_pred             CEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhhc
Q 010799          459 SRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       459 ~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      ..||-||-... +...+.   .-...+.+++.+.++..+.|+.+..
T Consensus       379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~  424 (494)
T COG0464         379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR  424 (494)
T ss_pred             eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence            33444443332 222211   1356899999999999999998764

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=97.19  E-value=0.004  Score=62.64  Aligned_cols=46  Identities=9%  Similarity=-0.026  Sum_probs=37.4

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..++.|.+++..+. -...+-++|.+|+||||+|+.+..
T Consensus        13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~   58 (355)
T TIGR02397        13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK   58 (355)
T ss_pred             HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999887543 235677899999999999977753

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.19  E-value=0.0022  Score=68.53  Aligned_cols=46  Identities=13%  Similarity=-0.047  Sum_probs=37.5

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus        15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk   60 (647)
T PRK07994         15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK   60 (647)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4679999999999999887643 234467899999999999998864

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=97.17  E-value=0.0023  Score=70.24  Aligned_cols=156  Identities=17%  Similarity=0.190  Sum_probs=84.4

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|+...+.++.+.+..-......|.|+|.+|+|||.+|+.+....  ...-...+.  ++|....  ...+... 
T Consensus       374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~--i~c~~~~--~~~~~~~-  446 (686)
T PRK15429        374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVK--MNCAAMP--AGLLESD-  446 (686)
T ss_pred             cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEE--EecccCC--hhHhhhh-
Confidence            34579999999999987775434445689999999999999999987632  111123333  5554332  1222211 


Q ss_pred             HHhccCCCCC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCCh
Q 010799          401 RQLTQDEVDE-ESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREA  468 (501)
Q Consensus       401 ~~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~  468 (501)
                        +.+..... ..........+   -....=.|+|||++.  ...+..|...+....         .....+||.||...
T Consensus       447 --lfg~~~~~~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~  521 (686)
T PRK15429        447 --LFGHERGAFTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD  521 (686)
T ss_pred             --hcCcccccccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence              11111100 00000111111   112234689999986  455566666654310         01345888888654


Q ss_pred             HHHhh----cC------CCCcceeCCCCCh
Q 010799          469 YVARS----FS------PSIFLHQLRPLNE  488 (501)
Q Consensus       469 ~~~~~----~~------~~~~~~~l~~L~~  488 (501)
                      .....    +.      -....+.++||.+
T Consensus       522 l~~~~~~~~f~~~L~~~l~~~~i~lPpLre  551 (686)
T PRK15429        522 LKKMVADREFRSDLYYRLNVFPIHLPPLRE  551 (686)
T ss_pred             HHHHHHcCcccHHHHhccCeeEEeCCChhh
Confidence            21110    00      0245788999987

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0066  Score=56.19  Aligned_cols=157  Identities=14%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             cccccccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEE
Q 010799          317 EISEEVTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVY  385 (501)
Q Consensus       317 ~~~~~~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~  385 (501)
                      .+.+..+++-|-+..+++|.+.+.-+           -..+.-+.+|||+|.|||-+|+..+.  +....|-       .
T Consensus       165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTFL-------K  235 (424)
T KOG0652|consen  165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATFL-------K  235 (424)
T ss_pred             CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchHH-------H
Confidence            33445678899999999999887421           13446799999999999999999776  5555552       1


Q ss_pred             eCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHh
Q 010799          386 VSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRI  449 (501)
Q Consensus       386 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~  449 (501)
                      ...+        ++...+-+.      ...-..+.+.-.-...+.+|++|+++..                ...-+++..
T Consensus       236 LAgP--------QLVQMfIGd------GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ  301 (424)
T KOG0652|consen  236 LAGP--------QLVQMFIGD------GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ  301 (424)
T ss_pred             hcch--------HHHhhhhcc------hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence            1111        011111111      1111222222222345789999997641                123355566


Q ss_pred             cCCCCCCCCCEEEEEeCChHHHh--hc--CCCCcceeCCCCChHHHHHHHH
Q 010799          450 FSPQASPIGSRVILITREAYVAR--SF--SPSIFLHQLRPLNEEESGKLFQ  496 (501)
Q Consensus       450 l~~~~~~~~~~iIiTtR~~~~~~--~~--~~~~~~~~l~~L~~~ea~~Lf~  496 (501)
                      |.-+......+||-.|-.-.+..  .+  +.-...++.+..+.+.-..+++
T Consensus       302 LDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQ  352 (424)
T KOG0652|consen  302 LDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQ  352 (424)
T ss_pred             hcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHH
Confidence            66533345667777654332211  11  1145567776555554444444

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.15  E-value=0.0027  Score=68.74  Aligned_cols=155  Identities=14%  Similarity=0.125  Sum_probs=83.6

Q ss_pred             ccceeecchhHHHHHHHhh---c-------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799          322 VTAVVSMENDILKLAKLTL---N-------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD  391 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~---~-------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~  391 (501)
                      ..++.|.+...+++.+.+.   .       +..-.+-+.|+|++|+|||++|+.++.  .....|   +.  ++.+.   
T Consensus       151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~--is~~~---  220 (644)
T PRK10733        151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FT--ISGSD---  220 (644)
T ss_pred             HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EE--EehHH---
Confidence            4567777766666655432   1       012234699999999999999999988  443333   11  22211   


Q ss_pred             hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----------------hHHHHHHhcCCCCC
Q 010799          392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----------------AWYDLKRIFSPQAS  455 (501)
Q Consensus       392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----------------~~~~l~~~l~~~~~  455 (501)
                             +......      .....+...+.......+++|+||+++...                .+..++..+..+..
T Consensus       221 -------~~~~~~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~  287 (644)
T PRK10733        221 -------FVEMFVG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG  287 (644)
T ss_pred             -------hHHhhhc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence                   1111111      112223333434444567899999987631                12333333332112


Q ss_pred             CCCCEEEEEeCChHH-HhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          456 PIGSRVILITREAYV-ARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       456 ~~~~~iIiTtR~~~~-~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +.+.-+|.||..... .....   .....+.++..+.++-.++|..+.
T Consensus       288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~  335 (644)
T PRK10733        288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM  335 (644)
T ss_pred             CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence            334445556655442 22221   135688899999888888887664

>PRK08118 topology modulation protein; Reviewed

Probab=97.14  E-value=0.00087  Score=59.55  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=27.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccc-cCCcccee
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTK-KNFPCRAW  381 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~~~w  381 (501)
                      ..|.|.|++|+||||||+.++...... -+|+..+|
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            358999999999999999999844333 34666665

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.13  E-value=0.0041  Score=57.76  Aligned_cols=48  Identities=23%  Similarity=0.304  Sum_probs=37.6

Q ss_pred             cccceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++++|-+.+.+.|.+-...  ......-+.+||..|+|||++++.+.+
T Consensus        25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~   74 (249)
T PF05673_consen   25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN   74 (249)
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence            457799999999998665421  123446788999999999999999888

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=97.13  E-value=0.0037  Score=60.05  Aligned_cols=170  Identities=20%  Similarity=0.239  Sum_probs=97.1

Q ss_pred             cceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcc-cccccCCccceeEEEEeCCCC-ChHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYES-SYTKKNFPCRAWANVYVSQDF-DMRSVFAD  398 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~-~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~  398 (501)
                      ..|+|-.++..++..++.+.  -+....+.|.||.|.|||.|......+ .++.++|-.     +...... .-.-.+..
T Consensus        24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~-----v~Lng~~~~dk~al~~   98 (408)
T KOG2228|consen   24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLL-----VRLNGELQTDKIALKG   98 (408)
T ss_pred             cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEE-----EEECccchhhHHHHHH
Confidence            56999999999999988542  123357889999999999988776653 133444411     3332221 12234555


Q ss_pred             HHHHhccCCCC---CCCCHHHHHHHHHHhcCC------ceEEEEEcCCCCh----hh--HHHHHHhcCCCCCCCCCEEEE
Q 010799          399 ILRQLTQDEVD---EESSLDDLESEFTGILYE------KRYLVVLDDVHSP----GA--WYDLKRIFSPQASPIGSRVIL  463 (501)
Q Consensus       399 i~~~l~~~~~~---~~~~~~~~~~~l~~~l~~------~r~LlVlDnv~~~----~~--~~~l~~~l~~~~~~~~~~iIi  463 (501)
                      |..|+......   ...+..+-...+-..|+.      -++++|+|+++-.    .+  +-.+.+.-... ..|=|-|-+
T Consensus        99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-r~Piciig~  177 (408)
T KOG2228|consen   99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-RAPICIIGV  177 (408)
T ss_pred             HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-CCCeEEEEe
Confidence            66655543321   122333333333333332      2688999998752    11  12222222220 344566778


Q ss_pred             EeCChH-------HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          464 ITREAY-------VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       464 TtR~~~-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      |||-.-       +-...+ ...++-+++++-++-.+++++.+
T Consensus       178 Ttrld~lE~LEKRVKSRFs-hr~I~m~~~~~l~~yv~l~r~ll  219 (408)
T KOG2228|consen  178 TTRLDILELLEKRVKSRFS-HRVIFMLPSLPLGDYVDLYRKLL  219 (408)
T ss_pred             eccccHHHHHHHHHHhhcc-cceeeccCCCChHHHHHHHHHHh
Confidence            998542       233332 44577788888888888887654

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.13  E-value=0.0031  Score=64.74  Aligned_cols=46  Identities=11%  Similarity=-0.036  Sum_probs=37.9

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus        17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk   62 (484)
T PRK14956         17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK   62 (484)
T ss_pred             HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999988653 124578999999999999999974

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.011  Score=54.51  Aligned_cols=150  Identities=13%  Similarity=0.181  Sum_probs=87.3

Q ss_pred             eeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH
Q 010799          325 VVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR  393 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~  393 (501)
                      +-|-+..++++.+.+.-+           -..+.-+.++|++|.|||-||+.+++|       ...-|  +.++..    
T Consensus       149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~f--irvsgs----  215 (404)
T KOG0728|consen  149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTF--IRVSGS----  215 (404)
T ss_pred             hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEE--EEechH----
Confidence            445677788877766322           235678999999999999999999983       22233  555532    


Q ss_pred             HHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh----------------hhHHHHHHhcCCCCCC
Q 010799          394 SVFADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQASP  456 (501)
Q Consensus       394 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~~~  456 (501)
                      ++.+...    +...       .....+.-.- .+-+.+|++|++++.                ...-+++..+.-+...
T Consensus       216 elvqk~i----gegs-------rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat  284 (404)
T KOG0728|consen  216 ELVQKYI----GEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT  284 (404)
T ss_pred             HHHHHHh----hhhH-------HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence            2222222    1111       1111111111 234678899998761                1233455555554456


Q ss_pred             CCCEEEEEeCChHHH-hhc---CCCCcceeCCCCChHHHHHHHHHh
Q 010799          457 IGSRVILITREAYVA-RSF---SPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       457 ~~~~iIiTtR~~~~~-~~~---~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      .+.+||..|-.-.+. ..+   +.....++.++.+.+.-.+++.-+
T Consensus       285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih  330 (404)
T KOG0728|consen  285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH  330 (404)
T ss_pred             cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence            678888866543322 211   114567889988888777776543

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.11  E-value=0.0024  Score=60.74  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=45.4

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI  424 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~  424 (501)
                      +..-+.++|++|+|||.||.++.+  .+...-..+.+  +++      .+++.++........         ....+.+.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f--~~~------~el~~~Lk~~~~~~~---------~~~~l~~~  164 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLF--ITA------PDLLSKLKAAFDEGR---------LEEKLLRE  164 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEE--EEH------HHHHHHHHHHHhcCc---------hHHHHHHH
Confidence            556899999999999999999999  55533334455  443      344555554444311         11222221


Q ss_pred             cCCceEEEEEcCCCC
Q 010799          425 LYEKRYLVVLDDVHS  439 (501)
Q Consensus       425 l~~~r~LlVlDnv~~  439 (501)
                      +. +-=||||||+-.
T Consensus       165 l~-~~dlLIiDDlG~  178 (254)
T COG1484         165 LK-KVDLLIIDDIGY  178 (254)
T ss_pred             hh-cCCEEEEecccC
Confidence            21 224899999865

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.11  E-value=0.006  Score=60.27  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=46.2

Q ss_pred             eEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCCCcceeCCCCChHHHHHHHHH
Q 010799          429 RYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPSIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       429 r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                      +-++|+|+++.  ....+.++..+..  ...++.+|++|.+.. +...+.+.-..+.+.+++.+++.+.+.+
T Consensus       114 ~kV~iiEp~~~Ld~~a~naLLk~LEe--p~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~  183 (325)
T PRK08699        114 LRVILIHPAESMNLQAANSLLKVLEE--PPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE  183 (325)
T ss_pred             ceEEEEechhhCCHHHHHHHHHHHHh--CcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence            44556688875  4556677777766  455677888887754 4434333456889999999999887764

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.10  E-value=0.0012  Score=61.64  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcC
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVP  195 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs  195 (501)
                      -.++|+|..|.|||||...+..  .....|.+..+++-.
T Consensus        14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~   50 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE   50 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence            3678999999999999999884  466789777666543

This is thought to be an ATPase involved in viral DNA packaging [].

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.10  E-value=0.0056  Score=58.72  Aligned_cols=139  Identities=12%  Similarity=0.119  Sum_probs=86.4

Q ss_pred             cccccch---hhHHHHHHHHhcC-CCCeeEEEEEeeCChhhHHHHhhhhcccccccc----cceeEEEEcCCCCCHHHHH
Q 010799          133 TGILDLN---KEVNKLADFLIRS-HSSLFTISVVDVAGSVMTTDLWKSYECETVKEY----FQCRAWVPVPEELERRELV  204 (501)
Q Consensus       133 ~~~vg~~---~~~~~l~~~L~~~-~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~  204 (501)
                      +..+|..   +..+.|.++|... ....+-+.|||-+|.|||+++++....+-....    --.++-|..+..++...+.
T Consensus        34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y  113 (302)
T PF05621_consen   34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY  113 (302)
T ss_pred             CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence            4456643   3345566666543 235677899999999999999988754322111    1156677788999999999


Q ss_pred             HHHHHHhcCCCCcCc--chHHHHHHHHccC-CeEEEEEecCCCh--------hHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          205 TDILKQVGGSKVEKQ--LDPQKKLRKLFTE-NRYLVVIINARTP--------DIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       205 ~~i~~~~~~~~~~~~--~~~~~~l~~~l~~-kr~LlVlDdv~~~--------~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      ..|+.+++.+.....  ..........|+. +-=+||+|++.+.        ...-.+...+.+.-.=+-|.|-|+..
T Consensus       114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A  191 (302)
T PF05621_consen  114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA  191 (302)
T ss_pred             HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence            999999998765432  2233444455544 3348999998652        11223333444444445555655543

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.10  E-value=0.003  Score=61.25  Aligned_cols=100  Identities=19%  Similarity=0.142  Sum_probs=50.9

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEE
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLV  237 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll  237 (501)
                      -+.++|.+|+||||+|+.+..--.-.......-|+.++.    .++    +..+.+..   .......+.+.   ..-+|
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~---~~~~~~~~~~a---~~gvL  125 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT---APKTKEILKRA---MGGVL  125 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc---hHHHHHHHHHc---cCcEE
Confidence            577899999999999976653211111111123454442    222    22222211   11122222222   23588


Q ss_pred             EEecCCC-----------hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          238 VIINART-----------PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       238 VlDdv~~-----------~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      +||++..           .+.++.|...+.....+.+||.++...
T Consensus       126 ~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~  170 (284)
T TIGR02880       126 FIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD  170 (284)
T ss_pred             EEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence            8999852           223455566665555566777776544

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=97.10  E-value=0.0085  Score=59.41  Aligned_cols=167  Identities=20%  Similarity=0.282  Sum_probs=94.9

Q ss_pred             cchhHHHHHHHhhcCC-CCceEEEEEecCCCChHHHHHHHHcccccccC----Ccc---ceeEEEEeCCCCChHHHHHHH
Q 010799          328 MENDILKLAKLTLNSS-DKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPC---RAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       328 R~~~~~~l~~~L~~~~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~---~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      |+...+.|.+.|.+.+ ..+.+|+|.|.=|+|||++.+.+..  .....    +..   -.|  -+...+.-...++.++
T Consensus         1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~~~~~~~~i~fn~w--~~~~~~~~~~~~~~~l   76 (325)
T PF07693_consen    1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKEDNKEKYIFIYFNAW--EYDGEDDLWASFLEEL   76 (325)
T ss_pred             ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcccccceeeEEEccc--cCCCcchHHHHHHHHH
Confidence            3455677888886643 6678999999999999999999887  33333    221   223  1112122233444444


Q ss_pred             HHHhccCCCC-----------------------------------------------------------------CCCCH
Q 010799          400 LRQLTQDEVD-----------------------------------------------------------------EESSL  414 (501)
Q Consensus       400 ~~~l~~~~~~-----------------------------------------------------------------~~~~~  414 (501)
                      ..++......                                                                 .....
T Consensus        77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (325)
T PF07693_consen   77 FDQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEV  156 (325)
T ss_pred             HHHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHH
Confidence            4444322110                                                                 00011


Q ss_pred             HHHHHHHHHhcC--CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCC--------------
Q 010799          415 DDLESEFTGILY--EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSP--------------  476 (501)
Q Consensus       415 ~~~~~~l~~~l~--~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~--------------  476 (501)
                      ++....+.+.+.  .+|.++++||++.  .+...+++..+......++...|+..-.+.+......              
T Consensus       157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y  236 (325)
T PF07693_consen  157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY  236 (325)
T ss_pred             HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence            123445555554  3689999999987  3333333333222212467877877765554443321              


Q ss_pred             ----CCcceeCCCCChHHHHHHHHHh
Q 010799          477 ----SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       477 ----~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                          ....+.+++++..+-..+|...
T Consensus       237 LeKiiq~~~~lP~~~~~~~~~~~~~~  262 (325)
T PF07693_consen  237 LEKIIQVPFSLPPPSPSDLERYLNEL  262 (325)
T ss_pred             HHhhcCeEEEeCCCCHHHHHHHHHHH
Confidence                2346888888888777776654

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.10  E-value=0.0021  Score=70.70  Aligned_cols=45  Identities=9%  Similarity=0.071  Sum_probs=31.6

Q ss_pred             eeecchhHHHHHHHhhcC--------CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          325 VVSMENDILKLAKLTLNS--------SDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~~--------~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -.|.++-++.+.+.+...        ......|+|.|.+|+|||+|...+...
T Consensus       421 g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~  473 (712)
T PRK09518        421 GRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE  473 (712)
T ss_pred             CCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence            345556666666555321        123468999999999999999998875

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.10  E-value=0.0036  Score=56.40  Aligned_cols=123  Identities=16%  Similarity=0.239  Sum_probs=67.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccce-eEEEEeCCCCChHHHHH------HHHHHhccCCC-----CCCCCH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRA-WANVYVSQDFDMRSVFA------DILRQLTQDEV-----DEESSL  414 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~-w~~v~~~~~~~~~~~~~------~i~~~l~~~~~-----~~~~~~  414 (501)
                      .+++|.|+.|+|||||.+.++.  .... ..+.+ |+...+.. .+......      +++..++....     ...+.-
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G--~~~~-~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G  101 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAG--LLKP-SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG  101 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC--CCCC-CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence            6999999999999999999887  3332 33333 32122211 11111111      13333333211     122333


Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCC-CCEEEEEeCChHHHhhc
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPI-GSRVILITREAYVARSF  474 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~-~~~iIiTtR~~~~~~~~  474 (501)
                      +...-.+.+.+...+-++++|+--.   ......+...+... ... +..||++|.+......+
T Consensus       102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~-~~~~~~tiii~sh~~~~~~~~  164 (180)
T cd03214         102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL-ARERGKTVVMVLHDLNLAARY  164 (180)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHh
Confidence            4444556666667788999999754   23334444444331 122 67899999887765443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.09  E-value=0.0086  Score=54.30  Aligned_cols=112  Identities=11%  Similarity=0.042  Sum_probs=59.1

Q ss_pred             HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc--------------------cccceeEEEEcCCCCCHHHH
Q 010799          144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK--------------------EYFQCRAWVPVPEELERREL  203 (501)
Q Consensus       144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~--------------------~~F~~~~wv~vs~~~~~~~l  203 (501)
                      .|.+.+..+. -...+-++|..|+||||+|+.+.+.-.-.                    .+.|.............+ -
T Consensus         3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~-~   80 (188)
T TIGR00678         3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVD-Q   80 (188)
T ss_pred             HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHH-H
Confidence            3445554332 23678899999999999998775421111                    122222211111112221 1


Q ss_pred             HHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          204 VTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       204 ~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      ++.+++.+....              ..+.+-++|+|++..  .+.++.|...+......+.+|++|++.
T Consensus        81 i~~i~~~~~~~~--------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~  136 (188)
T TIGR00678        81 VRELVEFLSRTP--------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP  136 (188)
T ss_pred             HHHHHHHHccCc--------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence            122222222110              124566888999854  445777777776655567777777643

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.09  E-value=0.0018  Score=56.51  Aligned_cols=118  Identities=13%  Similarity=0.017  Sum_probs=63.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEeCCCCChHHHHHHHHHHhcc-----CCCCCCCCH------
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYVSQDFDMRSVFADILRQLTQ-----DEVDEESSL------  414 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~------  414 (501)
                      ..|.|++..|.|||++|...+.  +.-.+=..+.+ -.+...........+..+- .+..     .......+.      
T Consensus         3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~   79 (159)
T cd00561           3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA   79 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence            4788999999999999988766  33333222232 0022222333333333330 0000     000000111      


Q ss_pred             -HHHHHHHHHhcCCce-EEEEEcCCCCh-----hhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799          415 -DDLESEFTGILYEKR-YLVVLDDVHSP-----GAWYDLKRIFSPQASPIGSRVILITREAY  469 (501)
Q Consensus       415 -~~~~~~l~~~l~~~r-~LlVlDnv~~~-----~~~~~l~~~l~~~~~~~~~~iIiTtR~~~  469 (501)
                       .......++.+.... =|+|||++-..     -+.+.+...+..  ...+..+|+|.|+..
T Consensus        80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~--rp~~~evIlTGr~~p  139 (159)
T cd00561          80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA--KPEDLELVLTGRNAP  139 (159)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc--CCCCCEEEEECCCCC
Confidence             123344455554444 49999998652     334566677766  677899999999853

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK07261 topology modulation protein; Provisional

Probab=97.07  E-value=0.0015  Score=58.35  Aligned_cols=34  Identities=15%  Similarity=0.077  Sum_probs=24.0

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccc-cccceeEE
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVK-EYFQCRAW  191 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~-~~F~~~~w  191 (501)
                      .|.|+|++|+||||||+.+.....+. -+.|...|
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~   36 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF   36 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence            48999999999999999987432221 13455555

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=97.07  E-value=0.017  Score=56.69  Aligned_cols=154  Identities=8%  Similarity=0.097  Sum_probs=89.3

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC--cc-c----eeEEEEeCCCCChHHHHHHHHHHh
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF--PC-R----AWANVYVSQDFDMRSVFADILRQL  403 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f--~~-~----~w~~v~~~~~~~~~~~~~~i~~~l  403 (501)
                      ..+.|.+.+.. +.-++...+.|+.|+||+++|..++...-..+.-  .| .    .+  +.....+|+..+        
T Consensus        11 ~~~~l~~~~~~-~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~--~~~g~HPD~~~i--------   79 (319)
T PRK06090         11 VWQNWKAGLDA-GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCEL--MQSGNHPDLHVI--------   79 (319)
T ss_pred             HHHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHH--HHcCCCCCEEEE--------
Confidence            34555555533 2334689999999999999999986632111110  00 0    01  111111111100        


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcC
Q 010799          404 TQDEVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFS  475 (501)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~  475 (501)
                      ...........+++. .+.+++.     +..-++|+|+++.  ....+.|+..+-.  .+.++..|++|.+. .+...+.
T Consensus        80 ~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~  156 (319)
T PRK06090         80 KPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIV  156 (319)
T ss_pred             ecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHH
Confidence            000000112333332 3334432     3355889999986  4667889999988  77778777776654 4555555


Q ss_pred             CCCcceeCCCCChHHHHHHHHHh
Q 010799          476 PSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       476 ~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +.-..+.+.+++.+++.+.+.+.
T Consensus       157 SRCq~~~~~~~~~~~~~~~L~~~  179 (319)
T PRK06090        157 SRCQQWVVTPPSTAQAMQWLKGQ  179 (319)
T ss_pred             hcceeEeCCCCCHHHHHHHHHHc
Confidence            56678999999999999888654

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0018  Score=68.48  Aligned_cols=94  Identities=20%  Similarity=0.242  Sum_probs=63.7

Q ss_pred             cceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCCh
Q 010799          323 TAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDM  392 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~  392 (501)
                      +++-|-++-..++.+-+.-          +-.+..-|.+||++|+|||-||++++.  ..+-.|       +++..+   
T Consensus       672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--EcsL~F-------lSVKGP---  739 (953)
T KOG0736|consen  672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECSLNF-------LSVKGP---  739 (953)
T ss_pred             hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hceeeE-------EeecCH---
Confidence            5677888888888766532          112345799999999999999999998  444333       676554   


Q ss_pred             HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799          393 RSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS  439 (501)
Q Consensus       393 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~  439 (501)
                           ++++..-+.      +++...+-+.+.-...+|+|+||++++
T Consensus       740 -----ELLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDS  775 (953)
T KOG0736|consen  740 -----ELLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDS  775 (953)
T ss_pred             -----HHHHHHhcc------hHHHHHHHHHHhhccCCeEEEeccccc
Confidence                 333333322      344455555555556899999999987

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=97.06  E-value=0.0028  Score=66.88  Aligned_cols=155  Identities=17%  Similarity=0.212  Sum_probs=85.3

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ...++|+...+.++.+.+..-......|.|+|..|+||+.+|+.+.+..  ...-...+.  ++|..-.+  ..+..   
T Consensus       186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s--~r~~~p~v~--v~c~~~~~--~~~e~---  256 (509)
T PRK05022        186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS--PRADKPLVY--LNCAALPE--SLAES---  256 (509)
T ss_pred             CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC--CcCCCCeEE--EEcccCCh--HHHHH---
Confidence            4569999999999999886655556789999999999999999987732  111122344  66654332  22221   


Q ss_pred             HhccCCCCC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCChH
Q 010799          402 QLTQDEVDE-ESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREAY  469 (501)
Q Consensus       402 ~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~~  469 (501)
                      .+.+..... ..........+ + ..+ .=.|+||+++.  ...+..|...+....         .....+||.||....
T Consensus       257 ~lfG~~~g~~~ga~~~~~g~~-~-~a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l  333 (509)
T PRK05022        257 ELFGHVKGAFTGAISNRSGKF-E-LAD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL  333 (509)
T ss_pred             HhcCccccccCCCcccCCcch-h-hcC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCH
Confidence            221111100 00000000011 1 112 22468999987  455666776665410         012458888876442


Q ss_pred             HHhh----cCC------CCcceeCCCCCh
Q 010799          470 VARS----FSP------SIFLHQLRPLNE  488 (501)
Q Consensus       470 ~~~~----~~~------~~~~~~l~~L~~  488 (501)
                      ....    +..      ....+.++||.+
T Consensus       334 ~~~~~~~~f~~dL~~rl~~~~i~lPpLre  362 (509)
T PRK05022        334 REEVRAGRFRADLYHRLSVFPLSVPPLRE  362 (509)
T ss_pred             HHHHHcCCccHHHHhcccccEeeCCCchh
Confidence            1110    110      245688999986

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.05  E-value=0.0044  Score=65.38  Aligned_cols=46  Identities=9%  Similarity=-0.093  Sum_probs=37.9

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+.+..+. -.+.+-++|+.|+||||+|+.+.+
T Consensus        15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk   60 (605)
T PRK05896         15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK   60 (605)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999887543 235677899999999999998864

>PRK08727 hypothetical protein; Validated

Probab=97.04  E-value=0.0021  Score=60.45  Aligned_cols=36  Identities=14%  Similarity=0.061  Sum_probs=25.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV  194 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v  194 (501)
                      ..+.|+|..|+|||.|++.+++.  ..++.....+++.
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~   77 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL   77 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence            45899999999999999999863  2233334455553

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.02  E-value=0.0019  Score=63.43  Aligned_cols=25  Identities=16%  Similarity=0.476  Sum_probs=23.1

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++.++|||++|+|||.+|+.++.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~  170 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFK  170 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            4568999999999999999999999

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.02  E-value=0.0056  Score=63.45  Aligned_cols=46  Identities=15%  Similarity=-0.013  Sum_probs=36.7

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus        12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk   57 (491)
T PRK14964         12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL   57 (491)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence            4678999999988888887553 234678999999999999988753

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.01  E-value=0.0058  Score=61.78  Aligned_cols=46  Identities=13%  Similarity=0.003  Sum_probs=38.1

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+...+.+.+.+..+. -.+.+-++|.+|+||||+|+.+.+
T Consensus        16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~   61 (367)
T PRK14970         16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR   61 (367)
T ss_pred             HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999997542 345788999999999999998864

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.00  E-value=0.0042  Score=58.52  Aligned_cols=128  Identities=11%  Similarity=0.100  Sum_probs=70.9

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV----  408 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~----  408 (501)
                      ..|.+.|..+=+...++.|+|.+|+|||+++.+++.. ... +=..++|  ++..+  +...+..++ ..++....    
T Consensus        12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y--~~~e~--~~~~~~~~~-~~~g~~~~~~~~   84 (234)
T PRK06067         12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYV--ITTEN--TSKSYLKQM-ESVKIDISDFFL   84 (234)
T ss_pred             HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEE--EEcCC--CHHHHHHHH-HHCCCChhHHHh
Confidence            4455555444456689999999999999999998652 122 2334566  66643  344444432 22221110    


Q ss_pred             ---------------CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799          409 ---------------DEESSLDDLESEFTGILYE-KRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITR  466 (501)
Q Consensus       409 ---------------~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR  466 (501)
                                     ....+.+.+...+.+.+.. +.-++|+|.+..      ......+...+... ...+..+++|+.
T Consensus        85 ~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l-~~~g~tvllt~~  163 (234)
T PRK06067         85 WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNL-VDLGKTILITLH  163 (234)
T ss_pred             CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHH-HhCCCEEEEEec
Confidence                           0112345677777777764 556899999752      22222332222210 123567788776


Q ss_pred             Ch
Q 010799          467 EA  468 (501)
Q Consensus       467 ~~  468 (501)
                      ..
T Consensus       164 ~~  165 (234)
T PRK06067        164 PY  165 (234)
T ss_pred             CC
Confidence            43

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.00  E-value=0.0029  Score=67.81  Aligned_cols=131  Identities=9%  Similarity=0.034  Sum_probs=72.0

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV  211 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~  211 (501)
                      -.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.....+      .-...++.-...+.|....
T Consensus        15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~   87 (585)
T PRK14950         15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGS   87 (585)
T ss_pred             HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCC
Confidence            4679999999999998887642 23456789999999999999887432111000      0011222222333333222


Q ss_pred             cCCC---C---cCcchHHHHHHHH-----ccCCeEEEEEecCC--ChhHHHHHhhcCCCCCCCcEEEEEec
Q 010799          212 GGSK---V---EKQLDPQKKLRKL-----FTENRYLVVIINAR--TPDIWDILKYLFPNSSNGSRVILSFQ  269 (501)
Q Consensus       212 ~~~~---~---~~~~~~~~~l~~~-----l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iivTtr  269 (501)
                      +.+.   +   ....+....+.+.     ..+++-++|+|++.  +.+..+.|...+......+.+|++|.
T Consensus        88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~  158 (585)
T PRK14950         88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT  158 (585)
T ss_pred             CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence            2110   0   0000111122221     12456689999985  45557777766665555666766664

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.99  E-value=0.003  Score=64.28  Aligned_cols=96  Identities=14%  Similarity=0.096  Sum_probs=62.1

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCC-CHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEEL-ERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL  236 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L  236 (501)
                      ++.|.|+-++|||||++.+...  ..+.   .+.+...+.. +..++ .+.               ...+.+.-..++.+
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~---------------~~~~~~~~~~~~~y   97 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDL---------------LRAYIELKEREKSY   97 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHH---------------HHHHHHhhccCCce
Confidence            9999999999999999766632  1111   4444332221 11111 111               11112221227889


Q ss_pred             EEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          237 VVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       237 lVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      |+||.|.....|+.....+.+..+. +|++|+-+..+-.
T Consensus        98 ifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~  135 (398)
T COG1373          98 IFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLS  135 (398)
T ss_pred             EEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence            9999999999999888888877666 8999998877654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.99  E-value=0.002  Score=56.96  Aligned_cols=117  Identities=18%  Similarity=0.141  Sum_probs=63.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI  424 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~  424 (501)
                      .+++|.|+.|+|||||.+.++.  ... ...+.++  +.-...  .+..+..   ......- . +.+.-+...-.+.+.
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G--~~~-~~~G~v~--~~g~~~~~~~~~~~~---~~~i~~~-~-qLS~G~~qrl~lara   96 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSG--LYK-PDSGEIL--VDGKEVSFASPRDAR---RAGIAMV-Y-QLSVGERQMVEIARA   96 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC--CCC-CCCeEEE--ECCEECCcCCHHHHH---hcCeEEE-E-ecCHHHHHHHHHHHH
Confidence            5999999999999999999887  322 2344444  221111  1111110   0111110 0 122333444555566


Q ss_pred             cCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          425 LYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       425 l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      +-..+-++++|+--+   ......+...+... ...+..||++|.+......+
T Consensus        97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~~~~~  148 (163)
T cd03216          97 LARNARLLILDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEI  148 (163)
T ss_pred             HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHh
Confidence            666778899999754   22233344433331 12377899999987755443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.98  E-value=0.002  Score=61.44  Aligned_cols=103  Identities=18%  Similarity=0.250  Sum_probs=60.0

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChHHHHHHHHHHhccCCCC
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD  409 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~  409 (501)
                      .|.++|..+=....+.=|+|++|+|||+|+..++-.......    =..++|  ++....++..++ .++++........
T Consensus        26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvy--idTe~~f~~~Rl-~~i~~~~~~~~~~  102 (256)
T PF08423_consen   26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVY--IDTEGTFSPERL-QQIAERFGLDPEE  102 (256)
T ss_dssp             HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEE--EESSSSS-HHHH-HHHHHHTTS-HHH
T ss_pred             HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEE--EeCCCCCCHHHH-HHHhhccccccch
Confidence            455555333334469999999999999999887653222222    234788  988887877665 4566654332111


Q ss_pred             --------CCCCHHHHHH---HHHHhcC-CceEEEEEcCCCC
Q 010799          410 --------EESSLDDLES---EFTGILY-EKRYLVVLDDVHS  439 (501)
Q Consensus       410 --------~~~~~~~~~~---~l~~~l~-~~r~LlVlDnv~~  439 (501)
                              ...+.+++..   .+...+. ++--|||+|.+-.
T Consensus       103 ~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaa  144 (256)
T PF08423_consen  103 ILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAA  144 (256)
T ss_dssp             HHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred             hhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHH
Confidence                    1233444433   3333333 3445999999754

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.98  E-value=0.00063  Score=67.07  Aligned_cols=46  Identities=20%  Similarity=0.417  Sum_probs=39.2

Q ss_pred             ceeecchhHHHHHHHhhcC----CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          324 AVVSMENDILKLAKLTLNS----SDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~~~----~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +++|.++.++++.+++...    ....+++.|.|++|+||||||..+++.
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~  101 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG  101 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999988542    335589999999999999999998874

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=96.98  E-value=0.0069  Score=62.68  Aligned_cols=43  Identities=19%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             ecchhHHHHHHHhhcC------CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          327 SMENDILKLAKLTLNS------SDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       327 GR~~~~~~l~~~L~~~------~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      |-++.++.+.+.+...      ....-.+++.|.+|+|||+|+..+...
T Consensus       147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~  195 (429)
T TIGR03594       147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGE  195 (429)
T ss_pred             ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCC
Confidence            4556666666665321      122346899999999999999998764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=96.97  E-value=0.005  Score=65.10  Aligned_cols=48  Identities=13%  Similarity=0.203  Sum_probs=37.8

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|+|....+.++.+.+..-......|.|+|..|+||+.+|+.+..
T Consensus       202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~  249 (520)
T PRK10820        202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL  249 (520)
T ss_pred             cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence            456799999999888877743233345688999999999999999654

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=96.96  E-value=0.0037  Score=63.80  Aligned_cols=169  Identities=17%  Similarity=0.251  Sum_probs=97.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCChhH--HHHHhhcCCCCCCCcEEEEE
Q 010799          190 AWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPDI--WDILKYLFPNSSNGSRVILS  267 (501)
Q Consensus       190 ~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iivT  267 (501)
                      +|| |.+..+...++..+++..+.....-.  -.....+.+....+=+||-|+|-.+.  .+ +...+....++..||+.
T Consensus         7 iLv-VDDd~~ir~~l~~~L~~~G~~v~~a~--~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~-ll~~i~~~~~~~pVI~~   82 (464)
T COG2204           7 ILV-VDDDPDIRELLEQALELAGYEVVTAE--SAEEALEALSESPFDLVLLDIRMPGMDGLE-LLKEIKSRDPDLPVIVM   82 (464)
T ss_pred             EEE-EeCCHHHHHHHHHHHHHcCCeEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCchHH-HHHHHHhhCCCCCEEEE
Confidence            444 55666888888888888774322211  13444555555578888888885322  22 22222333467889999


Q ss_pred             eccccchhc---ccCCCCCCCcccCcce---e----eeccccCCCCCCCCCCCCCCCCccccccccceeecchhHHHHHH
Q 010799          268 FQEADAARC---RNMSFFGGESSFKPKY---I----AYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAK  337 (501)
Q Consensus       268 tr~~~va~~---~~~~~l~~~~~~~~~~---~----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~fvGR~~~~~~l~~  337 (501)
                      |-.-++...   .+.+-+  +|.-+|..   +    ..+..........++   ..+  ........++|+...++++.+
T Consensus        83 Tg~g~i~~AV~A~k~GA~--Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~---~~~--~~~~~~~~liG~S~am~~l~~  155 (464)
T COG2204          83 TGHGDIDTAVEALRLGAF--DFLEKPFDLDRLLAIVERALELRELQRENRR---SLK--RAKSLGGELVGESPAMQQLRR  155 (464)
T ss_pred             eCCCCHHHHHHHHhcCcc--eeeeCCCCHHHHHHHHHHHHHHhhhhhhhhh---hhh--ccccccCCceecCHHHHHHHH
Confidence            988887653   332221  22222221   1    011110000000000   000  001234679999999999999


Q ss_pred             HhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          338 LTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       338 ~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .+..-......|.|+|.+|+||..+|+.+...
T Consensus       156 ~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~  187 (464)
T COG2204         156 LIAKVAPSDASVLITGESGTGKELVARAIHQA  187 (464)
T ss_pred             HHHHHhCCCCCEEEECCCCCcHHHHHHHHHhh
Confidence            98665555578999999999999999998764

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.96  E-value=0.0076  Score=55.88  Aligned_cols=155  Identities=15%  Similarity=0.134  Sum_probs=88.1

Q ss_pred             ccceeecchhHHH---HHHHhhcC----CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHH
Q 010799          322 VTAVVSMENDILK---LAKLTLNS----SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRS  394 (501)
Q Consensus       322 ~~~fvGR~~~~~~---l~~~L~~~----~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~  394 (501)
                      .++++|.++...+   |.+.|.++    .=.++.|..+|++|.|||.+|+.+++  ...-.|       +.+...     
T Consensus       120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~-------l~vkat-----  185 (368)
T COG1223         120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPL-------LLVKAT-----  185 (368)
T ss_pred             HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCce-------EEechH-----
Confidence            3678998876654   34555442    12357999999999999999999999  443333       333211     


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCC--------------hhhHHHHHHhcCCCCCCCCC
Q 010799          395 VFADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHS--------------PGAWYDLKRIFSPQASPIGS  459 (501)
Q Consensus       395 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~--------------~~~~~~l~~~l~~~~~~~~~  459 (501)
                         +++...-++.       ...+..+-+.- +.-+|++++|.++.              .+..++|+..+...-.+.|.
T Consensus       186 ---~liGehVGdg-------ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV  255 (368)
T COG1223         186 ---ELIGEHVGDG-------ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV  255 (368)
T ss_pred             ---HHHHHHhhhH-------HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence               1111111111       11122222222 23589999999875              23345565555443234555


Q ss_pred             EEEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhhc
Q 010799          460 RVILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       460 ~iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      ..|-.|-+.. +.....+ ...-++....+++|-.+++...+.
T Consensus       256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k  298 (368)
T COG1223         256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK  298 (368)
T ss_pred             EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence            5555554443 2223322 345777888889998888877653

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.96  E-value=0.0059  Score=67.46  Aligned_cols=46  Identities=9%  Similarity=-0.055  Sum_probs=37.5

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.+..++.|.+.+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus        14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr   59 (824)
T PRK07764         14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILAR   59 (824)
T ss_pred             HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999998653 224578999999999999988854

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.95  E-value=0.0025  Score=60.02  Aligned_cols=24  Identities=13%  Similarity=-0.123  Sum_probs=21.0

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ...+.|+|++|+|||+|++.+++.
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~   68 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAE   68 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457889999999999999998864

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.94  E-value=0.0041  Score=58.76  Aligned_cols=123  Identities=15%  Similarity=0.211  Sum_probs=69.9

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV----  408 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~----  408 (501)
                      ..|.++|..+=+.-.++.|.|++|+|||++|.++..  ..-..-..++|  ++..  .+...+.+.+. .++.+..    
T Consensus         8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~ly--vs~e--e~~~~i~~~~~-~~g~~~~~~~~   80 (237)
T TIGR03877         8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIY--VALE--EHPVQVRRNMA-QFGWDVRKYEE   80 (237)
T ss_pred             HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEE--EEee--CCHHHHHHHHH-HhCCCHHHHhh
Confidence            345555544445568999999999999999998766  22222344566  5543  34444444332 2211100    


Q ss_pred             -------------------------CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh---------hhHHHHHHhcCCC
Q 010799          409 -------------------------DEESSLDDLESEFTGILYE-KRYLVVLDDVHSP---------GAWYDLKRIFSPQ  453 (501)
Q Consensus       409 -------------------------~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~---------~~~~~l~~~l~~~  453 (501)
                                               ....+.++....+.+.+.. +.-++|+|.+...         .....+...+.  
T Consensus        81 ~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk--  158 (237)
T TIGR03877        81 EGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVLS--  158 (237)
T ss_pred             cCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHH--
Confidence                                     0123556667777766644 3447999997651         11122333332  


Q ss_pred             CCCCCCEEEEEeC
Q 010799          454 ASPIGSRVILITR  466 (501)
Q Consensus       454 ~~~~~~~iIiTtR  466 (501)
                        ..|+.+|+|+.
T Consensus       159 --~~~~t~llt~~  169 (237)
T TIGR03877       159 --GLGCTSIFVSQ  169 (237)
T ss_pred             --hCCCEEEEEEC
Confidence              45788888865

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0052  Score=66.35  Aligned_cols=117  Identities=16%  Similarity=0.231  Sum_probs=70.8

Q ss_pred             cceeecchhHHHHHHHhhc-------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799          323 TAVVSMENDILKLAKLTLN-------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~-------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~  395 (501)
                      .+++|.++.+..+.+.+..       ++....+....||.|||||.||+.++.  ..-+.-...+-        .+|++-
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR--------~DMSEy  560 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIR--------IDMSEY  560 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCcccee--------echHHH
Confidence            4689999999999888743       222335788899999999999999887  33221122222        233332


Q ss_pred             HH-HHHHHhccCCCCC-CCCHHHHHHHHHHhcCCceE-EEEEcCCCC--hhhHHHHHHhcCC
Q 010799          396 FA-DILRQLTQDEVDE-ESSLDDLESEFTGILYEKRY-LVVLDDVHS--PGAWYDLKRIFSP  452 (501)
Q Consensus       396 ~~-~i~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~r~-LlVlDnv~~--~~~~~~l~~~l~~  452 (501)
                      .. .-...|-+..+.. ..+  + -..|-+..+.++| +|.||+++.  ++.++-|+..|..
T Consensus       561 ~EkHsVSrLIGaPPGYVGye--e-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd  619 (786)
T COG0542         561 MEKHSVSRLIGAPPGYVGYE--E-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD  619 (786)
T ss_pred             HHHHHHHHHhCCCCCCceec--c-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence            22 1222333322221 111  1 3445566667777 888999985  6777777776655

>PRK09087 hypothetical protein; Validated

Probab=96.92  E-value=0.0024  Score=59.68  Aligned_cols=24  Identities=17%  Similarity=-0.165  Sum_probs=21.0

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -+.+.|+|..|+|||+|++..++.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~   67 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREK   67 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999988854

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.91  E-value=0.011  Score=52.40  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=64.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCcccee-E---EE-EeCCCCCh--HHHHHHHHHHhccCCCCCCCCHHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A---NV-YVSQDFDM--RSVFADILRQLTQDEVDEESSLDDLES  419 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~---~v-~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~  419 (501)
                      .+++|.|+.|+|||||++.++.-  .... .+.++ +   .+ .+.+...+  ..+...+...    .....+.-+...-
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~--~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv  100 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALAGL--WPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WDDVLSGGEQQRL  100 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC--CCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc----CCCCCCHHHHHHH
Confidence            59999999999999999998873  2221 22111 0   01 12222211  1233333211    1112334444555


Q ss_pred             HHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh
Q 010799          420 EFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVAR  472 (501)
Q Consensus       420 ~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~  472 (501)
                      .+.+.+..++-++++|+--+   ......+...+..  .  +..+|++|.+.....
T Consensus       101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~--~--~~tiiivsh~~~~~~  152 (166)
T cd03223         101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE--L--GITVISVGHRPSLWK  152 (166)
T ss_pred             HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH--h--CCEEEEEeCChhHHh
Confidence            56666667778889999654   2334445455544  2  467888998876654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.011  Score=55.62  Aligned_cols=121  Identities=17%  Similarity=0.204  Sum_probs=72.7

Q ss_pred             ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..++-|-+..++++.+...-+           -..+.-|.+||.+|.|||-||+++++  +.+..|-.+.=         
T Consensus       184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN--qTSATFlRvvG---------  252 (440)
T KOG0726|consen  184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN--QTSATFLRVVG---------  252 (440)
T ss_pred             hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc--ccchhhhhhhh---------
Confidence            456788899999887765321           23456788999999999999999999  77777743222         


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC-CceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY-EKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ  453 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~  453 (501)
                            .++.....+..+       .+...+.+.-. +-+-++++|+++..                ...-+|+..+.-+
T Consensus       253 ------seLiQkylGdGp-------klvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGF  319 (440)
T KOG0726|consen  253 ------SELIQKYLGDGP-------KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF  319 (440)
T ss_pred             ------HHHHHHHhccch-------HHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCc
Confidence                  122222222221       23444444443 34778888887641                1223455555553


Q ss_pred             CCCCCCEEEEEeC
Q 010799          454 ASPIGSRVILITR  466 (501)
Q Consensus       454 ~~~~~~~iIiTtR  466 (501)
                      ......+||..|.
T Consensus       320 dsrgDvKvimATn  332 (440)
T KOG0726|consen  320 DSRGDVKVIMATN  332 (440)
T ss_pred             cccCCeEEEEecc
Confidence            2333457777553

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.89  E-value=0.015  Score=55.75  Aligned_cols=117  Identities=9%  Similarity=0.038  Sum_probs=64.8

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-------CCCCHHHH
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-------EESSLDDL  417 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~  417 (501)
                      ....++|.|++|+|||||.+.++.  .+... .+.++  +.-..-. ..+...+++.....-...       ...+....
T Consensus       110 ~~~~~~i~g~~g~GKttl~~~l~~--~~~~~-~G~i~--~~g~~v~-~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~  183 (270)
T TIGR02858       110 RVLNTLIISPPQCGKTTLLRDLAR--ILSTG-ISQLG--LRGKKVG-IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA  183 (270)
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHhC--ccCCC-CceEE--ECCEEee-cchhHHHHHHHhcccccccccccccccccchHH
Confidence            346899999999999999999988  44433 33333  2211100 011112333222111000       00111111


Q ss_pred             HHHHHHhcC-CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          418 ESEFTGILY-EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       418 ~~~l~~~l~-~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                       ..+...+. ..+-++++|++...+.+..+...+..     |..+|+||.+..+...
T Consensus       184 -~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~-----G~~vI~ttH~~~~~~~  234 (270)
T TIGR02858       184 -EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHA-----GVSIIATAHGRDVEDL  234 (270)
T ss_pred             -HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhC-----CCEEEEEechhHHHHH
Confidence             12233332 46889999999887766666665433     7889999997766443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=96.89  E-value=0.0036  Score=57.00  Aligned_cols=46  Identities=17%  Similarity=0.316  Sum_probs=37.1

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...++||-++-+++|.-...+  .+.+-+.|.||||+||||-+..+++
T Consensus        25 ~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr   70 (333)
T KOG0991|consen   25 VLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLAR   70 (333)
T ss_pred             HHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHH
Confidence            347899999999988766644  4568899999999999997776666

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.88  E-value=0.011  Score=61.35  Aligned_cols=24  Identities=21%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .-.|+|.|.+|+|||||...+...
T Consensus       173 ~~~v~ivG~~n~GKStlin~ll~~  196 (435)
T PRK00093        173 PIKIAIIGRPNVGKSSLINALLGE  196 (435)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998754

>PRK07261 topology modulation protein; Provisional

Probab=96.88  E-value=0.0025  Score=56.87  Aligned_cols=21  Identities=33%  Similarity=0.651  Sum_probs=19.3

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|.|+|++|+||||||+.+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999876

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.87  E-value=0.003  Score=63.41  Aligned_cols=98  Identities=18%  Similarity=0.173  Sum_probs=55.8

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--  409 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--  409 (501)
                      +..|.+.|..+=..-.++.|.|.+|+|||||+.+++.  .....-..++|  ++..  .+...+. .-+..++.....  
T Consensus        68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlY--vs~E--Es~~qi~-~Ra~rlg~~~~~l~  140 (372)
T cd01121          68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLY--VSGE--ESPEQIK-LRADRLGISTENLY  140 (372)
T ss_pred             CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEE--EECC--cCHHHHH-HHHHHcCCCcccEE
Confidence            4455555544334457999999999999999999887  33333345566  6543  2333322 223334332211  


Q ss_pred             --CCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799          410 --EESSLDDLESEFTGILYEKRYLVVLDDVHS  439 (501)
Q Consensus       410 --~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~  439 (501)
                        ...+.+.+.+.+.   ..+.-++|+|.+..
T Consensus       141 l~~e~~le~I~~~i~---~~~~~lVVIDSIq~  169 (372)
T cd01121         141 LLAETNLEDILASIE---ELKPDLVIIDSIQT  169 (372)
T ss_pred             EEccCcHHHHHHHHH---hcCCcEEEEcchHH
Confidence              1234444444443   23567899999854

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=96.87  E-value=0.0091  Score=63.72  Aligned_cols=46  Identities=13%  Similarity=0.033  Sum_probs=38.0

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.+..++.|.+.+..+. -..-+-++|..|+||||+|+.+.+
T Consensus        23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk   68 (598)
T PRK09111         23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR   68 (598)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987653 234577899999999999998864

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.87  E-value=0.012  Score=58.70  Aligned_cols=24  Identities=25%  Similarity=0.327  Sum_probs=21.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.++|+|+|++|+||||++..++.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Confidence            457999999999999999988876

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.012  Score=54.77  Aligned_cols=123  Identities=15%  Similarity=0.208  Sum_probs=71.3

Q ss_pred             cceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799          323 TAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD  391 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~  391 (501)
                      .++-|=.+++++|.+....           +-+.+.-|.++|++|.|||-+|+.+++  +....|       +.+-..  
T Consensus       177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-------irvigs--  245 (435)
T KOG0729|consen  177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-------IRVIGS--  245 (435)
T ss_pred             ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-------EeehhH--
Confidence            4466777888888765432           124557899999999999999999999  555544       444221  


Q ss_pred             hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799          392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYE-KRYLVVLDDVHSP----------------GAWYDLKRIFSPQA  454 (501)
Q Consensus       392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~  454 (501)
                        ++    ....-+..       ......+.+.-+. +-|+|+||+++..                ...-++...|.-+.
T Consensus       246 --el----vqkyvgeg-------armvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd  312 (435)
T KOG0729|consen  246 --EL----VQKYVGEG-------ARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD  312 (435)
T ss_pred             --HH----HHHHhhhh-------HHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC
Confidence              11    11111111       1233444444444 4689999998641                11234445555521


Q ss_pred             CCCCCEEEEEeCChH
Q 010799          455 SPIGSRVILITREAY  469 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~  469 (501)
                      ...+.+|++.|-.+.
T Consensus       313 prgnikvlmatnrpd  327 (435)
T KOG0729|consen  313 PRGNIKVLMATNRPD  327 (435)
T ss_pred             CCCCeEEEeecCCCC
Confidence            223467787765443

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.018  Score=60.86  Aligned_cols=52  Identities=13%  Similarity=0.068  Sum_probs=41.5

Q ss_pred             cccccchhhHHHHHHHHhc----CCCCeeEEEEEeeCChhhHHHHhhhhccccccccc
Q 010799          133 TGILDLNKEVNKLADFLIR----SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYF  186 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~----~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F  186 (501)
                      .+-.|.++.++++++.|.-    ..-+-++++.||++|||||+|++.|..  ...+.|
T Consensus       323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf  378 (782)
T COG0466         323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF  378 (782)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence            5668999999999999973    223447999999999999999999983  444445

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.84  E-value=0.019  Score=53.81  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC-----
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE-----  407 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~-----  407 (501)
                      ..|.+.|..+=..-.++.|.|++|+|||+++..++.+  ....-..++|  ++...  +...+... +..+....     
T Consensus         7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~--is~e~--~~~~i~~~-~~~~g~~~~~~~~   79 (229)
T TIGR03881         7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIY--VTTEE--SRESIIRQ-AAQFGMDFEKAIE   79 (229)
T ss_pred             hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEE--EEccC--CHHHHHHH-HHHhCCCHHHHhh
Confidence            3444555333345579999999999999999987652  2222345667  66532  22333222 22111100     


Q ss_pred             ------------------CCCCCCHHHHHHHHHHhcCC---ceEEEEEcCCCCh-----hhHH----HHHHhcCCCCCCC
Q 010799          408 ------------------VDEESSLDDLESEFTGILYE---KRYLVVLDDVHSP-----GAWY----DLKRIFSPQASPI  457 (501)
Q Consensus       408 ------------------~~~~~~~~~~~~~l~~~l~~---~r~LlVlDnv~~~-----~~~~----~l~~~l~~~~~~~  457 (501)
                                        .....+.+++...+.+.+..   +.-++|+|.+...     ....    .+...+.    ..
T Consensus        80 ~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~----~~  155 (229)
T TIGR03881        80 EGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLN----RW  155 (229)
T ss_pred             cCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHH----hC
Confidence                              00123566777777766643   3457889997642     1111    2222222    35


Q ss_pred             CCEEEEEeCC
Q 010799          458 GSRVILITRE  467 (501)
Q Consensus       458 ~~~iIiTtR~  467 (501)
                      ++.+|+|+..
T Consensus       156 ~~tvil~~~~  165 (229)
T TIGR03881       156 NFTILLTSQY  165 (229)
T ss_pred             CCEEEEEecc
Confidence            8889999863

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.84  E-value=0.0012  Score=68.50  Aligned_cols=47  Identities=19%  Similarity=0.350  Sum_probs=40.1

Q ss_pred             ccceeecchhHHHHHHHh----hcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSMENDILKLAKLT----LNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L----~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.+++|.++.++++.+.|    .....+.+++.+.||+|+|||+||+.+++
T Consensus        75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455         75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence            456899999999999988    33345668999999999999999999876

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.84  E-value=0.0049  Score=62.69  Aligned_cols=48  Identities=8%  Similarity=-0.065  Sum_probs=37.5

Q ss_pred             ccccccchhhHHHHHHHHhc---C--------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR---S--------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~---~--------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..++.|++..+++|.+.+..   .        -...+-|.++|.+|+|||+||+.+.+.
T Consensus       130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~  188 (389)
T PRK03992        130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE  188 (389)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence            35788999999999887642   1        123456888999999999999999863

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.82  E-value=0.0041  Score=53.47  Aligned_cols=22  Identities=45%  Similarity=0.607  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -.|.|+|++|+||||++..+..
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e   27 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAE   27 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHH
Confidence            4689999999999999999987

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.82  E-value=0.0073  Score=60.60  Aligned_cols=113  Identities=11%  Similarity=0.087  Sum_probs=73.5

Q ss_pred             cccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHH
Q 010799          131 KKTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDIL  208 (501)
Q Consensus       131 ~~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~  208 (501)
                      .+..++||+.++..+.+|+...  ....+-+-|.|.+|.|||.+...++.+..-...=-+.+.+.-..--....+...|.
T Consensus       148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~  227 (529)
T KOG2227|consen  148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF  227 (529)
T ss_pred             CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence            4577999999999999999753  23455677899999999999999986532211111223332222234566777777


Q ss_pred             HHhc--CCCCcCcchHHHHHHHHccCCe--EEEEEecCC
Q 010799          209 KQVG--GSKVEKQLDPQKKLRKLFTENR--YLVVIINAR  243 (501)
Q Consensus       209 ~~~~--~~~~~~~~~~~~~l~~~l~~kr--~LlVlDdv~  243 (501)
                      ..+.  ........+.+..+.++..+.+  ||+|||...
T Consensus       228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD  266 (529)
T KOG2227|consen  228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMD  266 (529)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhh
Confidence            7662  2222233556777777776644  889999874

>PRK12377 putative replication protein; Provisional

Probab=96.81  E-value=0.0038  Score=59.03  Aligned_cols=73  Identities=8%  Similarity=-0.050  Sum_probs=44.1

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY  235 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~  235 (501)
                      ...+.++|.+|+|||+||..+.+...  ...-.++++++      .+++..+-......  .   . ...+.+.+ .+--
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~------~~l~~~l~~~~~~~--~---~-~~~~l~~l-~~~d  165 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTV------PDVMSRLHESYDNG--Q---S-GEKFLQEL-CKVD  165 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEH------HHHHHHHHHHHhcc--c---h-HHHHHHHh-cCCC
Confidence            45788999999999999999997433  33333455544      35555554443211  0   1 11222333 3456


Q ss_pred             EEEEecCC
Q 010799          236 LVVIINAR  243 (501)
Q Consensus       236 LlVlDdv~  243 (501)
                      ||||||+-
T Consensus       166 LLiIDDlg  173 (248)
T PRK12377        166 LLVLDEIG  173 (248)
T ss_pred             EEEEcCCC
Confidence            99999993

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.81  E-value=0.01  Score=53.18  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=59.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEE--EE-eCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWAN--VY-VSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG  423 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~--v~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~  423 (501)
                      .+++|.|+.|+|||||.+.+..  .....-..+.|+.  +. +.+...                   .+.-+...-.+..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~lar   84 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAG--QLIPNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIAA   84 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHc--CCCCCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHHH
Confidence            5999999999999999999887  3222222222311  11 111111                   1222333444555


Q ss_pred             hcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCC-CCEEEEEeCChHHHhhc
Q 010799          424 ILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPI-GSRVILITREAYVARSF  474 (501)
Q Consensus       424 ~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~-~~~iIiTtR~~~~~~~~  474 (501)
                      .+..++-++++|+--.   ......+...+... ... +..||++|.+......+
T Consensus        85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~-~~~~~~tiiivsH~~~~~~~~  138 (177)
T cd03222          85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL-SEEGKKTALVVEHDLAVLDYL  138 (177)
T ss_pred             HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-HHcCCCEEEEEECCHHHHHHh
Confidence            5666778999999754   22223333333321 112 36788999887766544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.015  Score=53.25  Aligned_cols=58  Identities=19%  Similarity=0.172  Sum_probs=38.0

Q ss_pred             HHHHHHhcCCceEEEEEcCCCChhhH---HHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCC
Q 010799          418 ESEFTGILYEKRYLVVLDDVHSPGAW---YDLKRIFSPQASPIGSRVILITREAYVARSFSP  476 (501)
Q Consensus       418 ~~~l~~~l~~~r~LlVlDnv~~~~~~---~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~  476 (501)
                      ...+.+.+.-++-+.|||+.++--+.   ..+...+... ..+++.+|+.|..+.+.....+
T Consensus       152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l-r~~~~~~liITHy~rll~~i~p  212 (251)
T COG0396         152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL-REEGRGVLIITHYQRLLDYIKP  212 (251)
T ss_pred             HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH-hcCCCeEEEEecHHHHHhhcCC
Confidence            34444555556789999999984333   3333333332 3458888999999998888763

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.80  E-value=0.0063  Score=60.28  Aligned_cols=102  Identities=17%  Similarity=0.181  Sum_probs=60.2

Q ss_pred             HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799          335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-  409 (501)
Q Consensus       335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-  409 (501)
                      |.++|..+=..-+++-|+|++|+|||+|+..++-..+....    -..++|  ++....++..++.+ ++..++..... 
T Consensus       115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvy--IdTE~tF~peRl~~-ia~~~g~d~~~~  191 (344)
T PLN03187        115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAY--IDTEGTFRPDRIVP-IAERFGMDADAV  191 (344)
T ss_pred             HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEE--EEcCCCCCHHHHHH-HHHHcCCChhhh
Confidence            33445433345578889999999999999888642222111    245788  88887777776544 55555443211 


Q ss_pred             -------CCCCHHHHHHH---HHHhcCC-ceEEEEEcCCCC
Q 010799          410 -------EESSLDDLESE---FTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       410 -------~~~~~~~~~~~---l~~~l~~-~r~LlVlDnv~~  439 (501)
                             ...+.++....   +...+.. +--|||+|.+..
T Consensus       192 l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSita  232 (344)
T PLN03187        192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIA  232 (344)
T ss_pred             cCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence                   23344443333   3333433 345899999753

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=96.80  E-value=0.015  Score=57.49  Aligned_cols=53  Identities=25%  Similarity=0.312  Sum_probs=37.8

Q ss_pred             HHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          420 EFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       420 ~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .+.+.+--++-+|++|+--+      ..+.-+|+..|..   ..+...|+.|.+-.+...++
T Consensus       436 AIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~---k~~LsYLFISHDL~VvrAl~  494 (534)
T COG4172         436 AIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ---KHGLSYLFISHDLAVVRALC  494 (534)
T ss_pred             HHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHH---HhCCeEEEEeccHHHHHHhh
Confidence            33444445677999999765      2444556666665   67888999999999888876

>PRK04328 hypothetical protein; Provisional

Probab=96.80  E-value=0.0077  Score=57.27  Aligned_cols=122  Identities=16%  Similarity=0.252  Sum_probs=67.2

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC------
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE------  407 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~------  407 (501)
                      .|.++|..+=+.-.++.|.|++|+|||+|+.++...  ....-...+|  ++...  +...+.+ .+..++.+.      
T Consensus        11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~ly--is~ee--~~~~i~~-~~~~~g~d~~~~~~~   83 (249)
T PRK04328         11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVY--VALEE--HPVQVRR-NMRQFGWDVRKYEEE   83 (249)
T ss_pred             hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEE--EEeeC--CHHHHHH-HHHHcCCCHHHHhhc
Confidence            444555443345579999999999999999998762  2222344566  66533  3333322 222222110      


Q ss_pred             --------C---------------CCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh---------hhHHHHHHhcCCCC
Q 010799          408 --------V---------------DEESSLDDLESEFTGILYE-KRYLVVLDDVHSP---------GAWYDLKRIFSPQA  454 (501)
Q Consensus       408 --------~---------------~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~---------~~~~~l~~~l~~~~  454 (501)
                              .               ....+.++....+.+.+.. +.-++|+|.+...         .....|...+.   
T Consensus        84 ~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk---  160 (249)
T PRK04328         84 GKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLS---  160 (249)
T ss_pred             CCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHH---
Confidence                    0               0123455666666666654 3457999998531         11122333332   


Q ss_pred             CCCCCEEEEEeC
Q 010799          455 SPIGSRVILITR  466 (501)
Q Consensus       455 ~~~~~~iIiTtR  466 (501)
                       ..++.+|+|+.
T Consensus       161 -~~g~t~llt~e  171 (249)
T PRK04328        161 -GLGCTAIFVSQ  171 (249)
T ss_pred             -hCCCEEEEEEC
Confidence             45788888864

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.79  E-value=0.0023  Score=60.93  Aligned_cols=75  Identities=11%  Similarity=0.022  Sum_probs=47.7

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCe
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENR  234 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr  234 (501)
                      +..-+.++|.+|+|||.||..+.|..- +..+.+. ++      ...++++++.......      ....+|.+.+. +-
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~-f~------~~~el~~~Lk~~~~~~------~~~~~l~~~l~-~~  168 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVL-FI------TAPDLLSKLKAAFDEG------RLEEKLLRELK-KV  168 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEE-EE------EHHHHHHHHHHHHhcC------chHHHHHHHhh-cC
Confidence            455678999999999999999997554 4444443 33      4566777766665541      11233333332 22


Q ss_pred             EEEEEecCCC
Q 010799          235 YLVVIINART  244 (501)
Q Consensus       235 ~LlVlDdv~~  244 (501)
                      =||||||+-.
T Consensus       169 dlLIiDDlG~  178 (254)
T COG1484         169 DLLIIDDIGY  178 (254)
T ss_pred             CEEEEecccC
Confidence            3899999843

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.78  E-value=0.014  Score=52.42  Aligned_cols=114  Identities=18%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe-----------------CCCCChHHHHHHHHHHhccCCCC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV-----------------SQDFDMRSVFADILRQLTQDEVD  409 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~-----------------~~~~~~~~~~~~i~~~l~~~~~~  409 (501)
                      .+++|.|+.|+|||||++.++.-  ... ..+.++  +.-                 .+...+..  ..+.+.+    ..
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~--~~~-~~G~i~--~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i----~~   97 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGD--LKP-QQGEIT--LDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL----GR   97 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc--CCC-CCCEEE--ECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh----cc
Confidence            58999999999999999998873  221 122222  111                 11111000  0111111    00


Q ss_pred             CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          410 EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       410 ~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      ..+.-+...-.+.+.+-.++-++++|+..+   ....+.+...+..  ...+..||++|.+......
T Consensus        98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~--~~~~~tii~~sh~~~~~~~  162 (178)
T cd03247          98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE--VLKDKTLIWITHHLTGIEH  162 (178)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH--HcCCCEEEEEecCHHHHHh
Confidence            122223344445566667778999999765   2333444444444  2336789999988876653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.78  E-value=0.01  Score=63.51  Aligned_cols=46  Identities=11%  Similarity=-0.070  Sum_probs=36.4

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus        15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk   60 (620)
T PRK14954         15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK   60 (620)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999887542 234477899999999999977754

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.77  E-value=0.014  Score=62.07  Aligned_cols=46  Identities=9%  Similarity=-0.062  Sum_probs=37.6

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus        12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk   57 (584)
T PRK14952         12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR   57 (584)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999997642 234567899999999999988864

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.77  E-value=0.0012  Score=55.13  Aligned_cols=21  Identities=43%  Similarity=0.754  Sum_probs=19.8

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +|.|.|++|+||||+|+.+..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999988

...

>PRK06526 transposase; Provisional

Probab=96.76  E-value=0.011  Score=56.23  Aligned_cols=73  Identities=11%  Similarity=-0.037  Sum_probs=40.9

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY  235 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~  235 (501)
                      ..-+.++|.+|+|||+||..+.+... ...+.+ .|      ....+++..+......      ......+...  .+.-
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v-~f------~t~~~l~~~l~~~~~~------~~~~~~l~~l--~~~d  161 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRV-LF------ATAAQWVARLAAAHHA------GRLQAELVKL--GRYP  161 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHH-HCCCch-hh------hhHHHHHHHHHHHHhc------CcHHHHHHHh--ccCC
Confidence            34578999999999999999875322 222322 22      2344555554433211      1122333332  2345


Q ss_pred             EEEEecCCC
Q 010799          236 LVVIINART  244 (501)
Q Consensus       236 LlVlDdv~~  244 (501)
                      ||||||+..
T Consensus       162 lLIIDD~g~  170 (254)
T PRK06526        162 LLIVDEVGY  170 (254)
T ss_pred             EEEEccccc
Confidence            899999853

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.76  E-value=0.0062  Score=56.69  Aligned_cols=120  Identities=10%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             cccc-hhhHHHHHHHHhcC-CCCeeEEEEEeeCChhhHHHHhhhhccccccccc-c-eeEEEEcCCCCCHHHHHHHHHHH
Q 010799          135 ILDL-NKEVNKLADFLIRS-HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYF-Q-CRAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       135 ~vg~-~~~~~~l~~~L~~~-~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F-~-~~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      ++|- .+..-...+.+... +.....+-|+|..|+|||.|.+.+++.-  .+.. . .++++      +..++...+...
T Consensus        11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~--~~~~~~~~v~y~------~~~~f~~~~~~~   82 (219)
T PF00308_consen   11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA--QKQHPGKRVVYL------SAEEFIREFADA   82 (219)
T ss_dssp             --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH--HHHCTTS-EEEE------EHHHHHHHHHHH
T ss_pred             CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH--Hhccccccceee------cHHHHHHHHHHH
Confidence            4564 34444555555543 3334567899999999999999999642  2221 2 22333      567777777777


Q ss_pred             hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC---hhHHHHHhhcCCC--CCCCcEEEEEecc
Q 010799          211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART---PDIWDILKYLFPN--SSNGSRVILSFQE  270 (501)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~~~~--~~~gs~iivTtr~  270 (501)
                      +...       ....+++.+++- =+|+|||+..   ...|......+-+  ...|-+||+|+..
T Consensus        83 ~~~~-------~~~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~  139 (219)
T PF00308_consen   83 LRDG-------EIEEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR  139 (219)
T ss_dssp             HHTT-------SHHHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             HHcc-------cchhhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence            6552       134555666543 3778999864   2334322221111  1346689998843

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK08181 transposase; Validated

Probab=96.76  E-value=0.0038  Score=59.78  Aligned_cols=71  Identities=8%  Similarity=-0.078  Sum_probs=40.7

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL  236 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L  236 (501)
                      .-+.++|.+|+|||.||..+.+..  ....-...++      +..+++..+......      ..... +.+.+. +--|
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~------~~~~L~~~l~~a~~~------~~~~~-~l~~l~-~~dL  170 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFT------RTTDLVQKLQVARRE------LQLES-AIAKLD-KFDL  170 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeee------eHHHHHHHHHHHHhC------CcHHH-HHHHHh-cCCE
Confidence            348899999999999999998532  2222233444      345566555433211      11122 222232 2349


Q ss_pred             EEEecCC
Q 010799          237 VVIINAR  243 (501)
Q Consensus       237 lVlDdv~  243 (501)
                      |||||+-
T Consensus       171 LIIDDlg  177 (269)
T PRK08181        171 LILDDLA  177 (269)
T ss_pred             EEEeccc
Confidence            9999984

>PRK05642 DNA replication initiation factor; Validated

Probab=96.75  E-value=0.0039  Score=58.71  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY  235 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~  235 (501)
                      ...+.|+|..|+|||.|++.+.+.-.  ..-...++++..      ++...                ...+.+.+++-. 
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~------~~~~~----------------~~~~~~~~~~~d-   99 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLA------ELLDR----------------GPELLDNLEQYE-   99 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHH------HHHhh----------------hHHHHHhhhhCC-
Confidence            35788999999999999999975321  111234555432      22221                012223333222 


Q ss_pred             EEEEecCCC---hhHHHH-HhhcCCC-CCCCcEEEEEeccc
Q 010799          236 LVVIINART---PDIWDI-LKYLFPN-SSNGSRVILSFQEA  271 (501)
Q Consensus       236 LlVlDdv~~---~~~~~~-l~~~~~~-~~~gs~iivTtr~~  271 (501)
                      +|++||+..   ...|.. +...+.. ...|..||+|++..
T Consensus       100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~  140 (234)
T PRK05642        100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS  140 (234)
T ss_pred             EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence            678999952   345643 3333321 13466788888643

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.75  E-value=0.014  Score=53.83  Aligned_cols=62  Identities=15%  Similarity=0.205  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          411 ESSLDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       411 ~~~~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .+.-+...-.+.+.+-..+-+|+.|+--.      ...+-.++..+..   ..|..||+.|.+..++..+.
T Consensus       143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~---~~g~tii~VTHd~~lA~~~d  210 (226)
T COG1136         143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK---ERGKTIIMVTHDPELAKYAD  210 (226)
T ss_pred             cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH---hcCCEEEEEcCCHHHHHhCC
Confidence            44455666677778888888999998432      2223333333322   45889999999999999764

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.75  E-value=0.0095  Score=57.03  Aligned_cols=100  Identities=18%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH-hccCCCCCCCC
Q 010799          335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ-LTQDEVDEESS  413 (501)
Q Consensus       335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~  413 (501)
                      |..+|..+=++-+++=|+|+.|+|||++|.+++-  .....-..++|  ++.-+.+++..+. +++.. +..-...+..+
T Consensus        49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~f--IDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~  123 (279)
T COG0468          49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAF--IDTEHALDPERAK-QLGVDLLDNLLVSQPDT  123 (279)
T ss_pred             HHHHhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEE--EeCCCCCCHHHHH-HHHHhhhcceeEecCCC
Confidence            3344444446668999999999999999999776  44555557889  9988888877653 33333 22222223344


Q ss_pred             HHH---HHHHHHHhcCCceEEEEEcCCCC
Q 010799          414 LDD---LESEFTGILYEKRYLVVLDDVHS  439 (501)
Q Consensus       414 ~~~---~~~~l~~~l~~~r~LlVlDnv~~  439 (501)
                      .++   +.+.+......+--|+|+|.+-.
T Consensus       124 ~e~q~~i~~~~~~~~~~~i~LvVVDSvaa  152 (279)
T COG0468         124 GEQQLEIAEKLARSGAEKIDLLVVDSVAA  152 (279)
T ss_pred             HHHHHHHHHHHHHhccCCCCEEEEecCcc
Confidence            443   34444444444345999999864

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.74  E-value=0.018  Score=49.68  Aligned_cols=104  Identities=18%  Similarity=0.207  Sum_probs=60.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      .+++|.|+.|+|||||++.+..  ... ...+.++  +.-..             .+.  .-.+.+.-+...-.+.+.+.
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G--~~~-~~~G~i~--~~~~~-------------~i~--~~~~lS~G~~~rv~laral~   86 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAG--ELE-PDEGIVT--WGSTV-------------KIG--YFEQLSGGEKMRLALAKLLL   86 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcC--CCC-CCceEEE--ECCeE-------------EEE--EEccCCHHHHHHHHHHHHHh
Confidence            6999999999999999999877  222 2344444  21100             000  00001122233344555566


Q ss_pred             CceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          427 EKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       427 ~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      .++-++++|+-..   ......+...+..  .  +..||++|.+......+
T Consensus        87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~--~--~~til~~th~~~~~~~~  133 (144)
T cd03221          87 ENPNLLLLDEPTNHLDLESIEALEEALKE--Y--PGTVILVSHDRYFLDQV  133 (144)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHH--c--CCEEEEEECCHHHHHHh
Confidence            6777999999754   3334455555544  2  35788899887766544

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.74  E-value=0.00058  Score=58.66  Aligned_cols=85  Identities=14%  Similarity=0.125  Sum_probs=47.6

Q ss_pred             EEEEeeCChhhHHHHhhhhcccccccccce-eEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEE
Q 010799          159 ISVVDVAGSVMTTDLWKSYECETVKEYFQC-RAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLV  237 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~~~v~~~F~~-~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll  237 (501)
                      |-++|.+|+|||+||+.+..-      ++. ..-+.++...+..+++...--. .....-....+...++     +..++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~------~~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~-----~~~il   69 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAAL------LGRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMR-----KGGIL   69 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHH------HTCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHH-----EEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHH------hhcceEEEEeccccccccceeeeeec-cccccccccccccccc-----ceeEE
Confidence            568999999999999999842      222 2345677778888776433222 1111101111111111     78899


Q ss_pred             EEecCC--ChhHHHHHhhcC
Q 010799          238 VIINAR--TPDIWDILKYLF  255 (501)
Q Consensus       238 VlDdv~--~~~~~~~l~~~~  255 (501)
                      |||++.  +.+.+..|...+
T Consensus        70 ~lDEin~a~~~v~~~L~~ll   89 (139)
T PF07728_consen   70 VLDEINRAPPEVLESLLSLL   89 (139)
T ss_dssp             EESSCGG--HHHHHTTHHHH
T ss_pred             EECCcccCCHHHHHHHHHHH
Confidence            999997  344455554444

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK06696 uridine kinase; Validated

Probab=96.73  E-value=0.0019  Score=60.33  Aligned_cols=42  Identities=26%  Similarity=0.376  Sum_probs=34.9

Q ss_pred             ecchhHHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          327 SMENDILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       327 GR~~~~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|.+.+++|.+.+.. ..+++.+|+|.|.+|+||||||..+..
T Consensus         2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696          2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE   44 (223)
T ss_pred             cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            367778888888754 345678999999999999999999887

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.73  E-value=0.012  Score=55.69  Aligned_cols=145  Identities=18%  Similarity=0.247  Sum_probs=73.6

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccCC---------ccceeEEEEeCCCC-ChHHHHHHHHHHhccCCCC--------
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKNF---------PCRAWANVYVSQDF-DMRSVFADILRQLTQDEVD--------  409 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---------~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~~~~--------  409 (501)
                      +..|+|+||+|||+||..++........|         ...+| |+....+. .+..-+..+...+......        
T Consensus         3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vl-yi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g   81 (239)
T cd01125           3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVV-YLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSG   81 (239)
T ss_pred             eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEE-EEECCCCHHHHHHHHHHHHhhcCCcCcccceEEecc
Confidence            56789999999999999987632111111         22333 14433322 2333444444443211000        


Q ss_pred             --C-----C---CCHHHHHHHHHHhc-CCceEEEEEcCCC--------ChhhHHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799          410 --E-----E---SSLDDLESEFTGIL-YEKRYLVVLDDVH--------SPGAWYDLKRIFSPQASPIGSRVILITREAYV  470 (501)
Q Consensus       410 --~-----~---~~~~~~~~~l~~~l-~~~r~LlVlDnv~--------~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~  470 (501)
                        .     .   ......+..+.+.+ ..+.-+||+|.+.        +......+...+.......++.||+++...+-
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~  161 (239)
T cd01125          82 RIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG  161 (239)
T ss_pred             CCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence              0     0   01122333333333 3456799999763        22333344443332112347888888775532


Q ss_pred             Hhh-------cC-------CCCcceeCCCCChHHHHH
Q 010799          471 ARS-------FS-------PSIFLHQLRPLNEEESGK  493 (501)
Q Consensus       471 ~~~-------~~-------~~~~~~~l~~L~~~ea~~  493 (501)
                      ...       ..       .....+.+.+++.+++.+
T Consensus       162 ~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~  198 (239)
T cd01125         162 SAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK  198 (239)
T ss_pred             cccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence            210       00       034578888899998877

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.73  E-value=0.012  Score=52.54  Aligned_cols=116  Identities=17%  Similarity=0.218  Sum_probs=61.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC--CChHHHHHHHHHHhcc--CCCC--C-------CCC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD--FDMRSVFADILRQLTQ--DEVD--E-------ESS  413 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~--~~~~~~~~~i~~~l~~--~~~~--~-------~~~  413 (501)
                      .+++|.|+.|+|||||.+.++.  .... ..+.++  +.-...  .....    ....+..  ....  .       .+.
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G--~~~~-~~G~i~--~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~   99 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLR--LYDP-TSGEIL--IDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSG   99 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc--CCCC-CCCEEE--ECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCH
Confidence            6999999999999999999987  3222 233333  111000  00000    0000000  0000  0       111


Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      -+...-.+...+..++-++++|+-..   ......+...+..  ...+..||++|.+......
T Consensus       100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~--~~~~~tii~~sh~~~~~~~  160 (171)
T cd03228         100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA--LAKGKTVIVIAHRLSTIRD  160 (171)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH--hcCCCEEEEEecCHHHHHh
Confidence            22223345555666778999999764   2333444444444  2235789999998876654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13695 putative NTPase; Provisional

Probab=96.73  E-value=0.0035  Score=56.08  Aligned_cols=64  Identities=11%  Similarity=0.078  Sum_probs=37.3

Q ss_pred             ceEEEEEcCCCChhh-----HHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC---C--CCcceeCCCCChHHHHHHHH
Q 010799          428 KRYLVVLDDVHSPGA-----WYDLKRIFSPQASPIGSRVILITREAYVARSFS---P--SIFLHQLRPLNEEESGKLFQ  496 (501)
Q Consensus       428 ~r~LlVlDnv~~~~~-----~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~---~--~~~~~~l~~L~~~ea~~Lf~  496 (501)
                      +.-+|++|+++..+.     .+.+...+ .    .+..+|+|+....+...+.   .  ...++.+.+-+.++-..-..
T Consensus        96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~-~----~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~  169 (174)
T PRK13695         96 EADVIIIDEIGKMELKSPKFVKAVEEVL-D----SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEIL  169 (174)
T ss_pred             CCCEEEEECCCcchhhhHHHHHHHHHHH-h----CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHH
Confidence            455689998765222     23333333 3    3567888888765433221   1  56788888777776554333

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.72  E-value=0.0058  Score=60.66  Aligned_cols=102  Identities=9%  Similarity=-0.009  Sum_probs=63.9

Q ss_pred             hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccce-eEEEEcCCC-CCHHHHHHHHHHHhcCCCCcC
Q 010799          141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQC-RAWVPVPEE-LERRELVTDILKQVGGSKVEK  218 (501)
Q Consensus       141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~-~~wv~vs~~-~~~~~l~~~i~~~~~~~~~~~  218 (501)
                      -..++++.+..-..+ .-+.|+|.+|+|||||++.+.+.-.- .+=+. .+|+.+.+. -++.++++.+...+.....+.
T Consensus       119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de  196 (380)
T PRK12608        119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR  196 (380)
T ss_pred             hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence            344588888743222 35699999999999999998753211 12234 467777665 467888888887776543221


Q ss_pred             --cch-----HHHHHHHHc--cCCeEEEEEecCCC
Q 010799          219 --QLD-----PQKKLRKLF--TENRYLVVIINART  244 (501)
Q Consensus       219 --~~~-----~~~~l~~~l--~~kr~LlVlDdv~~  244 (501)
                        ...     ......+++  ++++.+||+|++..
T Consensus       197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr  231 (380)
T PRK12608        197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR  231 (380)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence              111     111222222  58999999999854

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.71  E-value=0.0053  Score=58.72  Aligned_cols=41  Identities=17%  Similarity=0.220  Sum_probs=29.1

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ  388 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~  388 (501)
                      ..-.++.|+|++|+|||++|.+++..  ....-..+++  ++...
T Consensus        34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vly--is~Ee   74 (259)
T TIGR03878        34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLF--VTVES   74 (259)
T ss_pred             ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEE--EEecC
Confidence            44579999999999999999998763  2122234566  66643

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.014  Score=61.43  Aligned_cols=128  Identities=22%  Similarity=0.248  Sum_probs=70.1

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccC-CccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHH--
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKN-FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESE--  420 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--  420 (501)
                      -...-|.|.|+.|+|||.||+++++  .+... .-.+.+  ++|+.-.                    ....+.+.+.  
T Consensus       429 ~~~~~Ill~G~~GsGKT~L~kal~~--~~~k~~~~hv~~--v~Cs~l~--------------------~~~~e~iQk~l~  484 (952)
T KOG0735|consen  429 FRHGNILLNGPKGSGKTNLVKALFD--YYSKDLIAHVEI--VSCSTLD--------------------GSSLEKIQKFLN  484 (952)
T ss_pred             cccccEEEeCCCCCCHhHHHHHHHH--HhccccceEEEE--Eechhcc--------------------chhHHHHHHHHH
Confidence            3446899999999999999999998  55432 222333  6664321                    1112222222  


Q ss_pred             --HHHhcCCceEEEEEcCCCCh-------------------hhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCC--
Q 010799          421 --FTGILYEKRYLVVLDDVHSP-------------------GAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSP--  476 (501)
Q Consensus       421 --l~~~l~~~r~LlVlDnv~~~-------------------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~--  476 (501)
                        +.+.+...+-+|||||++..                   ..+..+...+..  .+...++|.|..... +...+.+  
T Consensus       485 ~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~--~~~~ia~Iat~qe~qtl~~~L~s~~  562 (952)
T KOG0735|consen  485 NVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK--RNRKIAVIATGQELQTLNPLLVSPL  562 (952)
T ss_pred             HHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc--cCcEEEEEEechhhhhcChhhcCcc
Confidence              33334456889999998741                   111122222222  233334555554433 2222221  


Q ss_pred             -CCcceeCCCCChHHHHHHHHH
Q 010799          477 -SIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       477 -~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                       ...+..++++...+-.++++.
T Consensus       563 ~Fq~~~~L~ap~~~~R~~IL~~  584 (952)
T KOG0735|consen  563 LFQIVIALPAPAVTRRKEILTT  584 (952)
T ss_pred             ceEEEEecCCcchhHHHHHHHH
Confidence             345788888888777766653

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.71  E-value=0.012  Score=60.76  Aligned_cols=75  Identities=9%  Similarity=0.098  Sum_probs=47.0

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccc-eeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCe
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-CRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENR  234 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr  234 (501)
                      ..-+-|+|.+|+|||+|++.+.+.-. ..+.. ...|+      +..++...+...+....       ...+++.++.+.
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi------~~~~f~~~~~~~~~~~~-------~~~f~~~~~~~~  195 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYI------TSEKFLNDLVDSMKEGK-------LNEFREKYRKKV  195 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEE------EHHHHHHHHHHHHhccc-------HHHHHHHHHhcC
Confidence            34589999999999999999997422 22223 23444      34566667766664321       233444444445


Q ss_pred             EEEEEecCCC
Q 010799          235 YLVVIINART  244 (501)
Q Consensus       235 ~LlVlDdv~~  244 (501)
                      -+|+|||+..
T Consensus       196 dvLlIDDi~~  205 (440)
T PRK14088        196 DVLLIDDVQF  205 (440)
T ss_pred             CEEEEechhh
Confidence            5899999963

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.71  E-value=0.073  Score=52.14  Aligned_cols=117  Identities=9%  Similarity=0.045  Sum_probs=64.9

Q ss_pred             cchhhHHHHHHHHhcCC--CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCC
Q 010799          137 DLNKEVNKLADFLIRSH--SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGS  214 (501)
Q Consensus       137 g~~~~~~~l~~~L~~~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~  214 (501)
                      ++........+++..-.  ...+-+-++|..|+|||.||..+.+... ...+. +.++++      ..++..+-..+...
T Consensus       135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~~~  206 (306)
T PRK08939        135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSISDG  206 (306)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHhcC
Confidence            34444444555555321  2345688999999999999999997533 33343 345544      35666665554321


Q ss_pred             CCcCcchHHHHHHHHccCCeEEEEEecCC--ChhHHH--HHhhcC-CCC-CCCcEEEEEec
Q 010799          215 KVEKQLDPQKKLRKLFTENRYLVVIINAR--TPDIWD--ILKYLF-PNS-SNGSRVILSFQ  269 (501)
Q Consensus       215 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~--~l~~~~-~~~-~~gs~iivTtr  269 (501)
                            .....+. .++ +-=||||||+-  ....|.  .+...+ ... ..+-.+|+||-
T Consensus       207 ------~~~~~l~-~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN  259 (306)
T PRK08939        207 ------SVKEKID-AVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN  259 (306)
T ss_pred             ------cHHHHHH-Hhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence                  1222222 232 44589999985  345574  344433 222 23444677763

>PHA02244 ATPase-like protein

Probab=96.70  E-value=0.0094  Score=59.02  Aligned_cols=40  Identities=28%  Similarity=0.419  Sum_probs=27.8

Q ss_pred             eeecchhHH----HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          325 VVSMENDIL----KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       325 fvGR~~~~~----~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |+|....+.    .+..++..    ...|.|+|++|+|||+||+.++.
T Consensus        98 ~ig~sp~~~~~~~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~  141 (383)
T PHA02244         98 KIASNPTFHYETADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAE  141 (383)
T ss_pred             ccCCCHHHHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHH
Confidence            555544443    34444422    24678899999999999999988

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=96.70  E-value=0.0093  Score=64.97  Aligned_cols=47  Identities=17%  Similarity=0.318  Sum_probs=38.6

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.++|....+.++.+.+..-......|.|+|.+|+||+++|+.+.+
T Consensus       324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~  370 (638)
T PRK11388        324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN  370 (638)
T ss_pred             ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence            56799999999998887754334445689999999999999999876

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=96.70  E-value=0.0072  Score=53.44  Aligned_cols=114  Identities=16%  Similarity=0.096  Sum_probs=64.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccc-cCCccce--eEEEEeCCCCChHHHHHHHHHHhccC--CC---CCCCC-----
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTK-KNFPCRA--WANVYVSQDFDMRSVFADILRQLTQD--EV---DEESS-----  413 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~~~--w~~v~~~~~~~~~~~~~~i~~~l~~~--~~---~~~~~-----  413 (501)
                      ..|.|++..|.||||.|...+.  +.. ..+...+  |  +...........+..+  .+...  ..   ....+     
T Consensus         6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQF--lKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~   79 (173)
T TIGR00708         6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQF--IKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT   79 (173)
T ss_pred             cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEE--ecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence            5888898899999999988765  332 2333211  3  3333223333444332  11110  00   00011     


Q ss_pred             --HHHHHHHHHHhcCCceE-EEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          414 --LDDLESEFTGILYEKRY-LVVLDDVHS-----PGAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       414 --~~~~~~~l~~~l~~~r~-LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                        ..+.....++.+...+| |+|||++..     .-+.+++...+..  .+++..+|+|.|+.
T Consensus        80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~--rp~~~evVlTGR~~  140 (173)
T TIGR00708        80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE--RPGHQHVIITGRGC  140 (173)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh--CCCCCEEEEECCCC
Confidence              22344555666655555 999999864     2233466666666  67789999999986

Alternate name: corrinoid adenosyltransferase.

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=96.69  E-value=0.0057  Score=58.27  Aligned_cols=94  Identities=14%  Similarity=0.030  Sum_probs=57.4

Q ss_pred             eEEEEEeeCChhhHHHHhhhhccccccccc-ceeEEEEcCCCCC-HHHHHHHHHHHhcCC--------CCcCc-ch----
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYF-QCRAWVPVPEELE-RRELVTDILKQVGGS--------KVEKQ-LD----  221 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F-~~~~wv~vs~~~~-~~~l~~~i~~~~~~~--------~~~~~-~~----  221 (501)
                      .-++|.|-+|+|||||++.+++.  ++.+| +.++++.+.+... ..++.+++...-...        .+++. ..    
T Consensus        70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~  147 (274)
T cd01133          70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA  147 (274)
T ss_pred             CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence            45799999999999999999964  44445 5566777776654 456666665431111        01100 00    


Q ss_pred             -HHHHHHHHc---cCCeEEEEEecCCCh-hHHHHHh
Q 010799          222 -PQKKLRKLF---TENRYLVVIINARTP-DIWDILK  252 (501)
Q Consensus       222 -~~~~l~~~l---~~kr~LlVlDdv~~~-~~~~~l~  252 (501)
                       ..-.+.+++   +++..|+++||+... ..+.++.
T Consensus       148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis  183 (274)
T cd01133         148 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVS  183 (274)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHH
Confidence             122344555   389999999998652 3344444

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=96.68  E-value=0.017  Score=60.78  Aligned_cols=47  Identities=13%  Similarity=0.265  Sum_probs=39.6

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++|....+.++.+.+..-......|.|.|.+|+||+.+|+.+++
T Consensus       211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~  257 (526)
T TIGR02329       211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQ  257 (526)
T ss_pred             hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHH
Confidence            46699999999999888854344457899999999999999999876

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.68  E-value=0.014  Score=53.89  Aligned_cols=63  Identities=11%  Similarity=0.146  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          413 SLDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       413 ~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .-+...-.+.+.|.-++-+||+|+.-+.   .....+...|.......+..+|+.|.+-.+...++
T Consensus       144 GGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c  209 (252)
T COG1124         144 GGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC  209 (252)
T ss_pred             hhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence            3344445566677777889999997652   11122222222211255778999999988777665

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.68  E-value=0.017  Score=51.68  Aligned_cols=114  Identities=23%  Similarity=0.260  Sum_probs=62.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHccc-cc--ccC---Cc--cceeEEEEeCCCCChHHHHHHHHHHhccCCC-C-----CCC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESS-YT--KKN---FP--CRAWANVYVSQDFDMRSVFADILRQLTQDEV-D-----EES  412 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~-~~--~~~---f~--~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~-~-----~~~  412 (501)
                      .+++|.|+.|+|||||.+.+..+. .+  ...   |.  ...|  +  .+        .+.+..+..... .     ..+
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~--~q--------~~~l~~~~L~~~~~~~~~~~LS   89 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--I--DQ--------LQFLIDVGLGYLTLGQKLSTLS   89 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--E--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence            699999999999999999875321 11  111   10  1112  1  11        345555554321 1     112


Q ss_pred             CHHHHHHHHHHhcCCc--eEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          413 SLDDLESEFTGILYEK--RYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       413 ~~~~~~~~l~~~l~~~--r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      .-+...-.+...+..+  +-++++|+--.   ......+...+... ...|..||++|.+......
T Consensus        90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tvIivSH~~~~~~~  154 (176)
T cd03238          90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEHNLDVLSS  154 (176)
T ss_pred             HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHh
Confidence            2233344455555566  77888999754   23333333333331 1247789999998876643

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.64  E-value=0.0097  Score=53.32  Aligned_cols=35  Identities=34%  Similarity=0.636  Sum_probs=28.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCcccee
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW  381 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w  381 (501)
                      ...+|.+.|++|+||||+|+.++.  .....+....+
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~   40 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIY   40 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEE
Confidence            446999999999999999999988  55555655555

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.64  E-value=0.0083  Score=59.57  Aligned_cols=103  Identities=15%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-cc-ceeEEEEeCC-CCChHHHHHHHHHHhccCCC
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-PC-RAWANVYVSQ-DFDMRSVFADILRQLTQDEV  408 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~-~~w~~v~~~~-~~~~~~~~~~i~~~l~~~~~  408 (501)
                      ..++.+++..-. +-..+.|+|++|+|||||++.+++  .+.... +. .+|  +.+.+ ..++.++...++..+.....
T Consensus       120 ~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv--~lIgER~~EV~df~~~i~~~Vvast~  194 (380)
T PRK12608        120 SMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMV--LLIDERPEEVTDMRRSVKGEVYASTF  194 (380)
T ss_pred             hHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEE--EEecCCCCCHHHHHHHHhhhEEeecC
Confidence            344666665322 224679999999999999999888  444333 23 245  55644 44677888888776665432


Q ss_pred             CCCC----CHHHHHHHHHHhc--CCceEEEEEcCCCC
Q 010799          409 DEES----SLDDLESEFTGIL--YEKRYLVVLDDVHS  439 (501)
Q Consensus       409 ~~~~----~~~~~~~~l~~~l--~~~r~LlVlDnv~~  439 (501)
                      ....    ..-.....+.+++  .++.++||+|++..
T Consensus       195 de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr  231 (380)
T PRK12608        195 DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR  231 (380)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence            1111    1111222333333  36789999999864

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.64  E-value=0.002  Score=63.59  Aligned_cols=48  Identities=2%  Similarity=0.073  Sum_probs=40.9

Q ss_pred             cccccchhhHHHHHHHHhcC----CCCeeEEEEEeeCChhhHHHHhhhhccc
Q 010799          133 TGILDLNKEVNKLADFLIRS----HSSLFTISVVDVAGSVMTTDLWKSYECE  180 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~  180 (501)
                      .+++|.++.++++++++...    +...+++.++|++|+||||||+.+.+.-
T Consensus        51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l  102 (361)
T smart00763       51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            37999999999999999742    3356899999999999999999998644

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.012  Score=57.41  Aligned_cols=67  Identities=27%  Similarity=0.269  Sum_probs=49.5

Q ss_pred             CCCCCCccccccccceeecchhHHHHHHHhhcC------------CCCceEEEEEecCCCChHHHHHHHHcccccccCCc
Q 010799          310 PKQVPDEEISEEVTAVVSMENDILKLAKLTLNS------------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP  377 (501)
Q Consensus       310 ~~~~~~~~~~~~~~~fvGR~~~~~~l~~~L~~~------------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~  377 (501)
                      +..++..++-....++-|-+..++.|.+++.-+            -...+-|.++||+|+|||-||+.++.  +....|-
T Consensus        79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Ak--eaga~fI  156 (386)
T KOG0737|consen   79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAK--EAGANFI  156 (386)
T ss_pred             hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHH--HcCCCcc
Confidence            344455566667788899999999887775221            12346899999999999999999998  6666663


Q ss_pred             c
Q 010799          378 C  378 (501)
Q Consensus       378 ~  378 (501)
                      .
T Consensus       157 n  157 (386)
T KOG0737|consen  157 N  157 (386)
T ss_pred             e
Confidence            3

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.63  E-value=0.0012  Score=55.04  Aligned_cols=21  Identities=24%  Similarity=0.047  Sum_probs=19.5

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ||.|.|++|+||||+|+.+.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

...

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.61  E-value=0.018  Score=61.20  Aligned_cols=46  Identities=9%  Similarity=-0.164  Sum_probs=36.5

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus        15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk   60 (624)
T PRK14959         15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAK   60 (624)
T ss_pred             HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence            3578999888888888887542 235677899999999999988864

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.60  E-value=0.011  Score=52.81  Aligned_cols=122  Identities=20%  Similarity=0.223  Sum_probs=60.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEeCCCCChHHHHHHHHHHhccCCCCC-------CCCHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYVSQDFDMRSVFADILRQLTQDEVDE-------ESSLDDLE  418 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~  418 (501)
                      .+++|.|+.|+|||||.+.++.  .... ..+.++ +...+.. .........+.-.........       .+.-+...
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G--~~~~-~~G~i~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr  104 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILG--LLRP-TSGRVRLDGADISQ-WDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR  104 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh--ccCC-CCCeEEECCEEccc-CCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence            5999999999999999999887  2222 223222 1111110 011111000000000000000       11222334


Q ss_pred             HHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          419 SEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       419 ~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      -.+...+..++-++++|+.-.   ......+...+... ...|..||++|.+......
T Consensus       105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tii~~sh~~~~~~~  161 (173)
T cd03246         105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLAS  161 (173)
T ss_pred             HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHh
Confidence            445555666777899999754   22233333333321 1237789999988876643

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.60  E-value=0.026  Score=58.99  Aligned_cols=46  Identities=11%  Similarity=-0.069  Sum_probs=37.2

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.+..+..|.+.+..+. -.+.+-++|..|+||||+|+.+..
T Consensus        15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk   60 (486)
T PRK14953         15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK   60 (486)
T ss_pred             HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999997643 234567899999999999988753

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=96.59  E-value=0.019  Score=57.74  Aligned_cols=46  Identities=11%  Similarity=-0.002  Sum_probs=36.9

Q ss_pred             cccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhh
Q 010799          131 KKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       131 ~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ...+++|.+..+..|.+.+..+. -...+-++|+.|+||+|||..+.
T Consensus        17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A   62 (365)
T PRK07471         17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMA   62 (365)
T ss_pred             chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999988653 23457899999999999986654

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.56  E-value=0.012  Score=60.86  Aligned_cols=99  Identities=17%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-  409 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-  409 (501)
                      -+..|.+.|..+=..-.++.|.|.+|+|||||+.+++.  .....-..++|  ++..  .+...+... +..++..... 
T Consensus        65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlY--vs~E--es~~qi~~r-a~rlg~~~~~l  137 (446)
T PRK11823         65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLY--VSGE--ESASQIKLR-AERLGLPSDNL  137 (446)
T ss_pred             CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EEcc--ccHHHHHHH-HHHcCCChhcE
Confidence            34556666644434457999999999999999999887  33322234566  5543  233333222 3344332110 


Q ss_pred             ---CCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799          410 ---EESSLDDLESEFTGILYEKRYLVVLDDVHS  439 (501)
Q Consensus       410 ---~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~  439 (501)
                         ...+.+.+...+.+   .+.-++|+|.+..
T Consensus       138 ~~~~e~~l~~i~~~i~~---~~~~lVVIDSIq~  167 (446)
T PRK11823        138 YLLAETNLEAILATIEE---EKPDLVVIDSIQT  167 (446)
T ss_pred             EEeCCCCHHHHHHHHHh---hCCCEEEEechhh
Confidence               12344444444432   3556899999764

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.56  E-value=0.023  Score=60.72  Aligned_cols=46  Identities=7%  Similarity=-0.036  Sum_probs=37.3

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+.-+..|.+.+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus        15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak   60 (576)
T PRK14965         15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK   60 (576)
T ss_pred             HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987652 234567899999999999988764

>PRK09183 transposase/IS protein; Provisional

Probab=96.55  E-value=0.0062  Score=58.23  Aligned_cols=73  Identities=11%  Similarity=-0.002  Sum_probs=40.2

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL  236 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L  236 (501)
                      ..+.|+|.+|+|||+||..+.+... ...+.+. ++      +..++...+......      ..+...+...+ .+.-+
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~-~~------~~~~l~~~l~~a~~~------~~~~~~~~~~~-~~~dl  167 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVR-FT------TAADLLLQLSTAQRQ------GRYKTTLQRGV-MAPRL  167 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEE-EE------eHHHHHHHHHHHHHC------CcHHHHHHHHh-cCCCE
Confidence            4577999999999999999975322 2222222 32      334444444322211      11223333322 34459


Q ss_pred             EEEecCCC
Q 010799          237 VVIINART  244 (501)
Q Consensus       237 lVlDdv~~  244 (501)
                      +||||+..
T Consensus       168 LiiDdlg~  175 (259)
T PRK09183        168 LIIDEIGY  175 (259)
T ss_pred             EEEccccc
Confidence            99999863

>PRK07667 uridine kinase; Provisional

Probab=96.54  E-value=0.0046  Score=56.39  Aligned_cols=37  Identities=24%  Similarity=0.473  Sum_probs=30.3

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.+.+.+........+|+|.|++|+||||+|..+..
T Consensus         3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~   39 (193)
T PRK07667          3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE   39 (193)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566677765556668999999999999999999877

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.54  E-value=0.0091  Score=58.76  Aligned_cols=104  Identities=15%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC----ccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF----PCRAWANVYVSQDFDMRSVFADILRQLTQDEV  408 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f----~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~  408 (501)
                      ..|..+|..+=..-.++.|+|++|+|||+|+..++.........    ..++|  ++....++..+ +.+++..+.....
T Consensus        83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvy--IdtE~~f~~~R-l~~ia~~~~~~~~  159 (316)
T TIGR02239        83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALY--IDTEGTFRPER-LLAIAERYGLNPE  159 (316)
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEE--EECCCCCCHHH-HHHHHHHcCCChH
Confidence            34445554443556799999999999999998877521111111    24578  88766666554 3344444333211


Q ss_pred             C--------CCCCHHHH---HHHHHHhcCC-ceEEEEEcCCCC
Q 010799          409 D--------EESSLDDL---ESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       409 ~--------~~~~~~~~---~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                      .        ...+.++.   +..+...+.+ +.-|||+|.+..
T Consensus       160 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~a  202 (316)
T TIGR02239       160 DVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATA  202 (316)
T ss_pred             HhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence            0        12233333   3333333433 456999999754

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR00763 lon ATP-dependent protease La

Probab=96.54  E-value=0.064  Score=59.69  Aligned_cols=47  Identities=13%  Similarity=0.037  Sum_probs=37.4

Q ss_pred             cccccchhhHHHHHHHHhc----CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIR----SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~----~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+++|.++.++.+.+++..    ...+-.++.++|.+|+|||++|+.+.+.
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~  370 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA  370 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            4588999999999887752    2223457899999999999999999853

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.034  Score=58.51  Aligned_cols=95  Identities=16%  Similarity=0.241  Sum_probs=58.3

Q ss_pred             ccceeecchhHHHH---HHHhhcCC-------CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799          322 VTAVVSMENDILKL---AKLTLNSS-------DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD  391 (501)
Q Consensus       322 ~~~fvGR~~~~~~l---~~~L~~~~-------~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~  391 (501)
                      +.+.-|.++..+++   .+.|.+++       .-++-+.++|++|+|||.||+.++.  ...-.|       ++.+..  
T Consensus       149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAg--EA~VPF-------f~iSGS--  217 (596)
T COG0465         149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAGVPF-------FSISGS--  217 (596)
T ss_pred             hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhc--ccCCCc-------eeccch--
Confidence            45677877665555   44454432       2346799999999999999999998  433333       222221  


Q ss_pred             hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799          392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS  439 (501)
Q Consensus       392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~  439 (501)
                            ++.+.+-+-.      .....+.+.+..++-+++|++|.++.
T Consensus       218 ------~FVemfVGvG------AsRVRdLF~qAkk~aP~IIFIDEiDA  253 (596)
T COG0465         218 ------DFVEMFVGVG------ASRVRDLFEQAKKNAPCIIFIDEIDA  253 (596)
T ss_pred             ------hhhhhhcCCC------cHHHHHHHHHhhccCCCeEEEehhhh
Confidence                  1222222211      22344666666667789999999875

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.52  E-value=0.0091  Score=56.21  Aligned_cols=90  Identities=13%  Similarity=0.048  Sum_probs=54.9

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhcccccccc----cceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-----------C
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEY----FQCRAWVPVPEELERRELVTDILKQVGGSKVE-----------K  218 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-----------~  218 (501)
                      +.-.++.|+|.+|+|||+|+.++.-.......    -...+|++....++...+.+ +++.++.....           +
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~   95 (235)
T cd01123          17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN   95 (235)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence            35678999999999999999988633222221    35788999888887665543 33443322111           1


Q ss_pred             cch---HHHHHHHHccC--CeEEEEEecCCC
Q 010799          219 QLD---PQKKLRKLFTE--NRYLVVIINART  244 (501)
Q Consensus       219 ~~~---~~~~l~~~l~~--kr~LlVlDdv~~  244 (501)
                      ..+   ....+...+..  +--|||+|.+..
T Consensus        96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~  126 (235)
T cd01123          96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA  126 (235)
T ss_pred             HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence            111   23444455533  456899999853

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=96.52  E-value=0.0062  Score=55.60  Aligned_cols=126  Identities=13%  Similarity=0.106  Sum_probs=61.4

Q ss_pred             cchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCC----C--C---CHHH----H
Q 010799          137 DLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPE----E--L---ERRE----L  203 (501)
Q Consensus       137 g~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~----~--~---~~~~----l  203 (501)
                      .+.......++.|.    +..++.+.|.+|.|||.||....-+.-..+.|+..+++.-.-    .  |   +..+    .
T Consensus         4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~   79 (205)
T PF02562_consen    4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY   79 (205)
T ss_dssp             --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred             CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence            44556666777777    356889999999999999877765544457788777663211    1  0   1111    1


Q ss_pred             HHHHHHHhcCCCCcCcchHHHHH---------HHHccCC---eEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEec
Q 010799          204 VTDILKQVGGSKVEKQLDPQKKL---------RKLFTEN---RYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQ  269 (501)
Q Consensus       204 ~~~i~~~~~~~~~~~~~~~~~~l---------~~~l~~k---r~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr  269 (501)
                      +..+.+.+..-...  ......+         ..+++|+   ..+|++|+..|  .+++..+   +...+.|||||++=-
T Consensus        80 ~~p~~d~l~~~~~~--~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD  154 (205)
T PF02562_consen   80 LRPIYDALEELFGK--EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGD  154 (205)
T ss_dssp             THHHHHHHTTTS-T--TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE-
T ss_pred             HHHHHHHHHHHhCh--HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecC
Confidence            22222222221111  0111111         1345564   35899999855  4445444   445577999999864


Q ss_pred             cc
Q 010799          270 EA  271 (501)
Q Consensus       270 ~~  271 (501)
                      ..
T Consensus       155 ~~  156 (205)
T PF02562_consen  155 PS  156 (205)
T ss_dssp             --
T ss_pred             ce
Confidence            43

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.51  E-value=0.009  Score=54.48  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++++.++|+.|+||||.+-.++.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa   23 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAA   23 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHH
Confidence            46899999999999987766665

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK06620 hypothetical protein; Validated

Probab=96.49  E-value=0.0039  Score=57.79  Aligned_cols=24  Identities=17%  Similarity=-0.092  Sum_probs=20.7

Q ss_pred             eEEEEEeeCChhhHHHHhhhhccc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECE  180 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~  180 (501)
                      +.+-|+|.+|+|||+|++.+.+..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~   68 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLS   68 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhcc
Confidence            568999999999999999987543

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.49  E-value=0.0032  Score=59.19  Aligned_cols=47  Identities=19%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             ccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.++..+.|.=++..   .....-.+.++||+|.||||||.-+++
T Consensus        25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~   74 (332)
T COG2255          25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN   74 (332)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence            47799999999888766642   334556899999999999999999998

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=96.48  E-value=0.015  Score=57.78  Aligned_cols=103  Identities=14%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD  409 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~  409 (501)
                      .|.++|..+=..-.++-|+|.+|+|||+|+..++.......    .-..++|  ++....++..++ .+++..+......
T Consensus       111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vly--IdtE~~f~~eRl-~qia~~~~~~~~~  187 (342)
T PLN03186        111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMY--IDTEGTFRPQRL-IQIAERFGLNGAD  187 (342)
T ss_pred             HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEE--EECCCCccHHHH-HHHHHHcCCChhh
Confidence            34444544334557899999999999999988774212111    1135788  888877777664 4556555433211


Q ss_pred             --------CCCCHHHHHHHHH---HhcC-CceEEEEEcCCCC
Q 010799          410 --------EESSLDDLESEFT---GILY-EKRYLVVLDDVHS  439 (501)
Q Consensus       410 --------~~~~~~~~~~~l~---~~l~-~~r~LlVlDnv~~  439 (501)
                              ...+.++....+.   ..+. .+.-|||+|.+..
T Consensus       188 ~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a  229 (342)
T PLN03186        188 VLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATA  229 (342)
T ss_pred             hccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence                    2234444433333   3333 3456999999764

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.48  E-value=0.018  Score=54.25  Aligned_cols=62  Identities=16%  Similarity=0.186  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          411 ESSLDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       411 ~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .+.-+...-.+...|..+.-+|+||+--+.      -++-++...+..   ..|..||+++.+.+.+..++
T Consensus       139 LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~---~~~~tvv~vlHDlN~A~rya  206 (258)
T COG1120         139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR---EKGLTVVMVLHDLNLAARYA  206 (258)
T ss_pred             cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHHHHhC
Confidence            344556667777888888889999985441      122223333332   45788999999999888876

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.47  E-value=0.012  Score=55.16  Aligned_cols=50  Identities=14%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      +...++.|.|++|+|||++|.+++... .... ..+++  ++  ...+..++++.+
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~y--i~--~e~~~~~~~~~~   71 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSY--VS--TQLTTTEFIKQM   71 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEE--Ee--CCCCHHHHHHHH
Confidence            444699999999999999997776622 1222 23344  44  333445555554

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.47  E-value=0.034  Score=57.00  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.++.++|++|+||||++..++.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~  117 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLAR  117 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999999988877

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.47  E-value=0.017  Score=51.54  Aligned_cols=112  Identities=19%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe-----------------CCCCCh---HHHHHHHHHHhccC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV-----------------SQDFDM---RSVFADILRQLTQD  406 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~-----------------~~~~~~---~~~~~~i~~~l~~~  406 (501)
                      .+++|.|+.|+|||||.+.++..  .. ...+.++  +.-                 .+...+   ..+...+.      
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~--~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------   95 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGL--LK-PDSGEIK--VLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------   95 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC--CC-CCCeEEE--ECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh------
Confidence            59999999999999999998773  22 1233333  211                 111000   01111111      


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          407 EVDEESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                          .+.-+...-.+...+..++-++++|+--.   ......+...+... ...|..+|++|.+......+
T Consensus        96 ----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tiii~th~~~~~~~~  161 (173)
T cd03230          96 ----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL-KKEGKTILLSSHILEEAERL  161 (173)
T ss_pred             ----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCHHHHHHh
Confidence                11222334456666667888999999764   22223333333321 12367899999988766644

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.012  Score=56.06  Aligned_cols=102  Identities=15%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI  424 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~  424 (501)
                      -+..++|||++|.|||-+|+.++.  +..-.|       +.++..        +|.....      ..+..-+.++++..
T Consensus       165 ~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf-------l~v~ss--------~lv~kyi------GEsaRlIRemf~yA  221 (388)
T KOG0651|consen  165 PPKGLLLYGPPGTGKTLLARAVAA--TMGVNF-------LKVVSS--------ALVDKYI------GESARLIRDMFRYA  221 (388)
T ss_pred             CCceeEEeCCCCCchhHHHHHHHH--hcCCce-------EEeeHh--------hhhhhhc------ccHHHHHHHHHHHH
Confidence            346899999999999999999988  544444       332211        1111111      11112223333333


Q ss_pred             cCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799          425 LYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQASPIGSRVILITREAY  469 (501)
Q Consensus       425 l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~  469 (501)
                      -...+|.|.+|+++..                ..+=+|+..+..+......++|+||-...
T Consensus       222 ~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd  282 (388)
T KOG0651|consen  222 REVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD  282 (388)
T ss_pred             hhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence            3445799999998751                11223444444433456788999987654

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=96.46  E-value=0.01  Score=61.44  Aligned_cols=103  Identities=11%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY  235 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~  235 (501)
                      ...+-|+|..|+|||+|++.+.+.-  .........+++    +..++...+...+....     +....+++.++ +.-
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~~l--~~~~~~~~v~yv----~~~~f~~~~~~~l~~~~-----~~~~~~~~~~~-~~d  208 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKNYI--ESNFSDLKVSYM----SGDEFARKAVDILQKTH-----KEIEQFKNEIC-QND  208 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHHHH--HHhCCCCeEEEE----EHHHHHHHHHHHHHHhh-----hHHHHHHHHhc-cCC
Confidence            3567899999999999999998632  211111111222    45667777777765321     12334444444 334


Q ss_pred             EEEEecCCCh---hHH-HHHhhcCCC-CCCCcEEEEEecc
Q 010799          236 LVVIINARTP---DIW-DILKYLFPN-SSNGSRVILSFQE  270 (501)
Q Consensus       236 LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~iivTtr~  270 (501)
                      +|||||+...   ..| +.+...+.. ...|..||+|+..
T Consensus       209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~  248 (450)
T PRK14087        209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK  248 (450)
T ss_pred             EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence            8889999532   223 233322221 1234567777654

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.46  E-value=0.013  Score=57.79  Aligned_cols=102  Identities=16%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799          335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-  409 (501)
Q Consensus       335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-  409 (501)
                      +..+|..+=....++-|+|++|+|||+++.+++.......    .-..++|  ++....++..++. +++..+...... 
T Consensus        84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~y--i~te~~f~~~rl~-~~~~~~gl~~~~~  160 (310)
T TIGR02236        84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVY--IDTENTFRPERIM-QMAEARGLDPDEV  160 (310)
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEE--EECCCCCCHHHHH-HHHHHcCCCHHHH
Confidence            3344433334557999999999999999999876322211    1136788  8887766665543 444443322100 


Q ss_pred             -------CCCCHH---HHHHHHHHhcCCc---eEEEEEcCCCC
Q 010799          410 -------EESSLD---DLESEFTGILYEK---RYLVVLDDVHS  439 (501)
Q Consensus       410 -------~~~~~~---~~~~~l~~~l~~~---r~LlVlDnv~~  439 (501)
                             ...+.+   .+.+.+.+.+...   .-+||+|.+..
T Consensus       161 ~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa  203 (310)
T TIGR02236       161 LKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS  203 (310)
T ss_pred             hhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence                   111111   2334455555432   45899998764

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=96.46  E-value=0.019  Score=57.32  Aligned_cols=48  Identities=10%  Similarity=0.007  Sum_probs=38.9

Q ss_pred             ccccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          130 AKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       130 ~~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .....++|-++....|...+.++. -...+-|+|..|+||||||..+..
T Consensus        20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~   67 (351)
T PRK09112         20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN   67 (351)
T ss_pred             CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence            345679999999999999997653 234688899999999999987764

>TIGR00416 sms DNA repair protein RadA

Probab=96.45  E-value=0.0084  Score=62.02  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=57.2

Q ss_pred             cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC
Q 010799          328 MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE  407 (501)
Q Consensus       328 R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~  407 (501)
                      ...-+..|.+.|..+=..-.++.|.|.+|+|||||+.+++.  .....-..++|  ++..  .+...+... +..+....
T Consensus        76 i~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~--~~a~~g~kvlY--vs~E--Es~~qi~~r-a~rlg~~~  148 (454)
T TIGR00416        76 FSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC--QLAKNQMKVLY--VSGE--ESLQQIKMR-AIRLGLPE  148 (454)
T ss_pred             cccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEE--EECc--CCHHHHHHH-HHHcCCCh
Confidence            34445666676654445557999999999999999999876  33322234566  6543  233333221 22222211


Q ss_pred             CC----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799          408 VD----EESSLDDLESEFTGILYEKRYLVVLDDVHS  439 (501)
Q Consensus       408 ~~----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~  439 (501)
                      ..    ...+.+.+...+.+   .+.-++|+|.+..
T Consensus       149 ~~l~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq~  181 (454)
T TIGR00416       149 PNLYVLSETNWEQICANIEE---ENPQACVIDSIQT  181 (454)
T ss_pred             HHeEEcCCCCHHHHHHHHHh---cCCcEEEEecchh
Confidence            10    12344444444432   2456899999764

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.45  E-value=0.021  Score=56.09  Aligned_cols=103  Identities=15%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD  409 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~  409 (501)
                      .|.++|..+=..-+++-|+|++|+|||+|+..++-.-+...    .-..++|  ++....++..++. +++..+......
T Consensus        84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvY--IdtE~~f~~eRi~-~~a~~~g~d~~~  160 (313)
T TIGR02238        84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAY--IDTEGTFRPDRIR-AIAERFGVDPDA  160 (313)
T ss_pred             HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEE--EEcCCCCCHHHHH-HHHHHcCCChHH
Confidence            34445544445557999999999999999988764212211    1235788  8887777776654 455555443211


Q ss_pred             --------CCCCHHHHH---HHHHHhcCC-ceEEEEEcCCCC
Q 010799          410 --------EESSLDDLE---SEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       410 --------~~~~~~~~~---~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                              ...+.++..   ..+...+.. +--|||+|.+..
T Consensus       161 ~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisa  202 (313)
T TIGR02238       161 VLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMA  202 (313)
T ss_pred             hcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence                    122344443   333334433 455899999764

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.45  E-value=0.018  Score=54.44  Aligned_cols=117  Identities=19%  Similarity=0.175  Sum_probs=62.3

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc--------------------
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT--------------------  404 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~--------------------  404 (501)
                      .-.++.|.|.+|+|||+++..++.+.. ..+=..++|  ++..  .+..++...++....                    
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly--~s~E--~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLF--FSLE--MSKEQLLQRLLASESGISLSKLRTGSLSDEDWERL   86 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEE--EeCC--CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHH
Confidence            346999999999999999998876322 221234455  5532  222233333221110                    


Q ss_pred             --------cCC----CCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCCCEE
Q 010799          405 --------QDE----VDEESSLDDLESEFTGILYE-KRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIGSRV  461 (501)
Q Consensus       405 --------~~~----~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~~~i  461 (501)
                              ...    .....+.+++...+...... +.-++|+|.+...          ..+..+...|.......++.+
T Consensus        87 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~i  166 (242)
T cd00984          87 AEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPV  166 (242)
T ss_pred             HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeE
Confidence                    000    00123566677666665543 4568999997531          112233333332112457888


Q ss_pred             EEEeC
Q 010799          462 ILITR  466 (501)
Q Consensus       462 IiTtR  466 (501)
                      |+|+.
T Consensus       167 i~~~q  171 (242)
T cd00984         167 IALSQ  171 (242)
T ss_pred             EEecc
Confidence            88884

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]

Probab=96.44  E-value=0.025  Score=55.16  Aligned_cols=135  Identities=22%  Similarity=0.279  Sum_probs=72.8

Q ss_pred             eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc-ccCCcccee--EEEEeCCC---------CC-
Q 010799          325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT-KKNFPCRAW--ANVYVSQD---------FD-  391 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~f~~~~w--~~v~~~~~---------~~-  391 (501)
                      +-+|..+..--.++|.+  +....|.+.|.+|+|||.||....-.... +..|..++-  .-+.+.++         .. 
T Consensus       226 i~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm  303 (436)
T COG1875         226 IRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM  303 (436)
T ss_pred             cCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence            44566777666777754  56789999999999999999776543222 233333211  00111110         01 


Q ss_pred             ---hHHHHHHHHHHhccCCCCCCCCHHHHHHHH----------HHhcCCc---eEEEEEcCCCChhhHHHHHHhcCCCCC
Q 010799          392 ---MRSVFADILRQLTQDEVDEESSLDDLESEF----------TGILYEK---RYLVVLDDVHSPGAWYDLKRIFSPQAS  455 (501)
Q Consensus       392 ---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l----------~~~l~~~---r~LlVlDnv~~~~~~~~l~~~l~~~~~  455 (501)
                         +..++. -++.+......   . ....+.+          -++++++   .-++|+|++++..- .+++-.+..  .
T Consensus       304 ~PWmq~i~D-nLE~L~~~~~~---~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR--~  375 (436)
T COG1875         304 GPWMQAIFD-NLEVLFSPNEP---G-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTR--A  375 (436)
T ss_pred             cchHHHHHh-HHHHHhccccc---c-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHh--c
Confidence               122222 22222222211   1 1222222          2344454   45899999998543 345555666  7


Q ss_pred             CCCCEEEEEeCChH
Q 010799          456 PIGSRVILITREAY  469 (501)
Q Consensus       456 ~~~~~iIiTtR~~~  469 (501)
                      +.||+|+.|.--..
T Consensus       376 G~GsKIVl~gd~aQ  389 (436)
T COG1875         376 GEGSKIVLTGDPAQ  389 (436)
T ss_pred             cCCCEEEEcCCHHH
Confidence            88999999864333

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=96.43  E-value=0.0088  Score=64.99  Aligned_cols=61  Identities=20%  Similarity=0.145  Sum_probs=36.0

Q ss_pred             CCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          412 SSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       412 ~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      +.-+...=.+.+.+-.++-+|+||+.-+.   +.-..+...+..  ...|..+|+.|........+
T Consensus       611 SGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~--~~~~~T~I~IaHRl~ti~~a  674 (709)
T COG2274         611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ--ILQGRTVIIIAHRLSTIRSA  674 (709)
T ss_pred             CHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH--HhcCCeEEEEEccchHhhhc
Confidence            34455566777778888899999997652   222334444444  34445555555555544443

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.43  E-value=0.015  Score=55.82  Aligned_cols=55  Identities=16%  Similarity=0.140  Sum_probs=33.4

Q ss_pred             hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHH
Q 010799          141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELV  204 (501)
Q Consensus       141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~  204 (501)
                      -.+++..++..+    ..+-+.|.+|+|||+||+.+.+  ....   ....++.....+..+++
T Consensus        10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll   64 (262)
T TIGR02640        10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV   64 (262)
T ss_pred             HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence            344455555432    2456899999999999999984  2211   22445555555555544

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=96.43  E-value=0.0089  Score=59.81  Aligned_cols=104  Identities=21%  Similarity=0.192  Sum_probs=56.0

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG  423 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~  423 (501)
                      ..++-+-|||..|.|||.|.-.+|.......+-. +.|   +    .-+.++...+- ++...        .+.+..+..
T Consensus        60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R-~HF---h----~Fm~~vh~~l~-~~~~~--------~~~l~~va~  122 (362)
T PF03969_consen   60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRR-VHF---H----EFMLDVHSRLH-QLRGQ--------DDPLPQVAD  122 (362)
T ss_pred             CCCceEEEECCCCCchhHHHHHHHHhCCcccccc-ccc---c----HHHHHHHHHHH-HHhCC--------CccHHHHHH
Confidence            3467899999999999999999998543322111 111   0    01222222222 22211        112455556


Q ss_pred             hcCCceEEEEEcCCCC--hhh---HHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799          424 ILYEKRYLVVLDDVHS--PGA---WYDLKRIFSPQASPIGSRVILITREAY  469 (501)
Q Consensus       424 ~l~~~r~LlVlDnv~~--~~~---~~~l~~~l~~~~~~~~~~iIiTtR~~~  469 (501)
                      .+.++..||+||++.-  ..+   +..|+..+-.    .|. +||+|.|..
T Consensus       123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~----~gv-vlVaTSN~~  168 (362)
T PF03969_consen  123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFK----RGV-VLVATSNRP  168 (362)
T ss_pred             HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHH----CCC-EEEecCCCC
Confidence            6667777999999764  332   2333333333    354 555555543

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.43  E-value=0.013  Score=57.96  Aligned_cols=102  Identities=16%  Similarity=0.171  Sum_probs=59.0

Q ss_pred             HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC----ccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-
Q 010799          335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF----PCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-  409 (501)
Q Consensus       335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f----~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-  409 (501)
                      +.++|..+=....++-|+|++|+|||+++.+++........+    ..++|  ++....++...+. +++..++..... 
T Consensus        91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~y--i~te~~f~~~rl~-~~~~~~g~~~~~~  167 (317)
T PRK04301         91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVY--IDTEGTFRPERIE-QMAEALGLDPDEV  167 (317)
T ss_pred             HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEE--EeCCCCcCHHHHH-HHHHHcCCChHhh
Confidence            334443333455799999999999999999987632221111    35778  8887766665544 334443322110 


Q ss_pred             -------CCCCH---HHHHHHHHHhcCC--ceEEEEEcCCCC
Q 010799          410 -------EESSL---DDLESEFTGILYE--KRYLVVLDDVHS  439 (501)
Q Consensus       410 -------~~~~~---~~~~~~l~~~l~~--~r~LlVlDnv~~  439 (501)
                             ...+.   ......+...+..  +--|||+|.+..
T Consensus       168 l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa  209 (317)
T PRK04301        168 LDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTA  209 (317)
T ss_pred             hccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence                   11111   2334555566654  345999999754

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=96.42  E-value=0.03  Score=59.01  Aligned_cols=48  Identities=13%  Similarity=0.239  Sum_probs=39.9

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ..+++|....+.++.+.+..-......|.|.|.+|+||+.+|+.+.+.
T Consensus       218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~  265 (538)
T PRK15424        218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE  265 (538)
T ss_pred             hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence            456999999999998887543444568999999999999999998773

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=96.41  E-value=0.029  Score=58.75  Aligned_cols=46  Identities=13%  Similarity=0.286  Sum_probs=38.1

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|....+.++.+.+..-......+.|+|.+|+|||++|+.+..
T Consensus       138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~  183 (469)
T PRK10923        138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR  183 (469)
T ss_pred             ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHh
Confidence            4689999999988887754444456799999999999999999776

>PTZ00035 Rad51 protein; Provisional

Probab=96.41  E-value=0.024  Score=56.26  Aligned_cols=104  Identities=15%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV  408 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~  408 (501)
                      ..|.++|..+=..-.++.|+|++|+|||+|+..++...+...    .-..++|  ++....++..+ +.+++..+.....
T Consensus       105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvy--IdtE~~f~~er-i~~ia~~~g~~~~  181 (337)
T PTZ00035        105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLY--IDTEGTFRPER-IVQIAERFGLDPE  181 (337)
T ss_pred             HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEE--EEccCCCCHHH-HHHHHHHhCCChH
Confidence            344555544445567999999999999999988875222111    1234567  77766555555 3444444433211


Q ss_pred             C--------CCCCHHHHHHHH---HHhcCC-ceEEEEEcCCCC
Q 010799          409 D--------EESSLDDLESEF---TGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       409 ~--------~~~~~~~~~~~l---~~~l~~-~r~LlVlDnv~~  439 (501)
                      .        ...+.++....+   ...+.. +--|||+|.+..
T Consensus       182 ~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita  224 (337)
T PTZ00035        182 DVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA  224 (337)
T ss_pred             hHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence            0        223444444433   333333 456999999764

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.40  E-value=0.021  Score=58.07  Aligned_cols=48  Identities=8%  Similarity=-0.071  Sum_probs=36.7

Q ss_pred             ccccccchhhHHHHHHHHhc---C--------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR---S--------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~---~--------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.++.|.+..+++|.+.+.-   .        -...+-+.++|.+|+|||+||+.+.+.
T Consensus       144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~  202 (398)
T PTZ00454        144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH  202 (398)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45788999888888776641   1        123466789999999999999999864

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.39  E-value=0.031  Score=50.77  Aligned_cols=65  Identities=17%  Similarity=0.192  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          410 EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       410 ~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +.+.-+...-.+.+.|.=++-++.||+.-+   ++-..+.+..+... ...|...|+.|.+-..+....
T Consensus       136 qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L-A~eGmTMivVTHEM~FAr~Va  203 (240)
T COG1126         136 QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMTMIIVTHEMGFAREVA  203 (240)
T ss_pred             ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH-HHcCCeEEEEechhHHHHHhh
Confidence            344455556667777777788899999876   33344444433331 346889999999988888776

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=96.38  E-value=0.0064  Score=52.11  Aligned_cols=46  Identities=11%  Similarity=-0.001  Sum_probs=30.9

Q ss_pred             ccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccc
Q 010799          136 LDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECET  181 (501)
Q Consensus       136 vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~  181 (501)
                      ||.-..+.++.+.+..-......|-|.|-.|+||+++|+.++....
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~   46 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG   46 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence            4555566666666653222345678999999999999999996543

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.022  Score=53.87  Aligned_cols=70  Identities=21%  Similarity=0.340  Sum_probs=46.3

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      -+-|.++|++|.|||.||+.++.  .....|       +++++.        ++.....+.       .+.+++.+.+.-
T Consensus       166 wrgiLLyGPPGTGKSYLAKAVAT--EAnSTF-------FSvSSS--------DLvSKWmGE-------SEkLVknLFemA  221 (439)
T KOG0739|consen  166 WRGILLYGPPGTGKSYLAKAVAT--EANSTF-------FSVSSS--------DLVSKWMGE-------SEKLVKNLFEMA  221 (439)
T ss_pred             ceeEEEeCCCCCcHHHHHHHHHh--hcCCce-------EEeehH--------HHHHHHhcc-------HHHHHHHHHHHH
Confidence            37899999999999999999998  433333       455432        222222222       234555555555


Q ss_pred             C-CceEEEEEcCCCC
Q 010799          426 Y-EKRYLVVLDDVHS  439 (501)
Q Consensus       426 ~-~~r~LlVlDnv~~  439 (501)
                      + +++-+|++|+++.
T Consensus       222 Re~kPSIIFiDEiDs  236 (439)
T KOG0739|consen  222 RENKPSIIFIDEIDS  236 (439)
T ss_pred             HhcCCcEEEeehhhh
Confidence            4 5688999999986

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=96.38  E-value=0.011  Score=64.31  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799          333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--  409 (501)
Q Consensus       333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--  409 (501)
                      ..|..+|. .+=+.-+++-|+|++|+|||+|+.+++.  .....-..++|  +...+..+.     ..++.++.+...  
T Consensus        46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~y--Id~E~t~~~-----~~A~~lGvDl~~ll  116 (790)
T PRK09519         46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAF--IDAEHALDP-----DYAKKLGVDTDSLL  116 (790)
T ss_pred             HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--ECCccchhH-----HHHHHcCCChhHeE
Confidence            34445554 3335568999999999999999988766  22233345677  776555552     355555554321  


Q ss_pred             --CCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          410 --EESSLDDLESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       410 --~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                        +..+.+.....+...+.. ..-|||+|.+..
T Consensus       117 v~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~a  149 (790)
T PRK09519        117 VSQPDTGEQALEIADMLIRSGALDIVVIDSVAA  149 (790)
T ss_pred             EecCCCHHHHHHHHHHHhhcCCCeEEEEcchhh
Confidence              344566677777776654 466899999763

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.37  E-value=0.0079  Score=55.07  Aligned_cols=110  Identities=13%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH--HHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCe
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER--RELVTDILKQVGGSKVEKQLDPQKKLRKLFTENR  234 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr  234 (501)
                      .+|.|+|..|.||||++..+...  ...+...++++ +.++...  .. ...++.+-.  .........+.++..|+...
T Consensus         2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~-~~~~i~q~~--vg~~~~~~~~~i~~aLr~~p   75 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHES-KRSLINQRE--VGLDTLSFENALKAALRQDP   75 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccC-ccceeeecc--cCCCccCHHHHHHHHhcCCc
Confidence            47899999999999999887632  22233334433 2222111  00 001111100  01112234667777777666


Q ss_pred             EEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          235 YLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       235 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      =+|++|++.+.+.+..+....   ..|..++.|+...+++.
T Consensus        76 d~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~  113 (198)
T cd01131          76 DVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK  113 (198)
T ss_pred             CEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence            799999999877765544332   24666889998877664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06696 uridine kinase; Validated

Probab=96.37  E-value=0.0038  Score=58.39  Aligned_cols=41  Identities=15%  Similarity=0.144  Sum_probs=33.3

Q ss_pred             chhhHHHHHHHHhc-CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          138 LNKEVNKLADFLIR-SHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       138 ~~~~~~~l~~~L~~-~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      |++-+++|.+.+.. ...+..+|+|.|.+|+||||||+.+..
T Consensus         3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696          3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE   44 (223)
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            55667778888764 234678999999999999999999984

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.36  E-value=0.033  Score=59.85  Aligned_cols=46  Identities=9%  Similarity=-0.057  Sum_probs=37.0

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..++.|.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus        16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk   61 (614)
T PRK14971         16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK   61 (614)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999997642 235577899999999999877653

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=96.36  E-value=0.04  Score=58.58  Aligned_cols=46  Identities=9%  Similarity=-0.095  Sum_probs=38.3

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+.+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus        15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk   60 (563)
T PRK06647         15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFAR   60 (563)
T ss_pred             HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998653 345677999999999999998864

>PRK06921 hypothetical protein; Provisional

Probab=96.36  E-value=0.0093  Score=57.22  Aligned_cols=24  Identities=21%  Similarity=0.046  Sum_probs=21.1

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..-+.++|..|+|||.||..+.+.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~  140 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANE  140 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456889999999999999999863

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.35  E-value=0.013  Score=60.08  Aligned_cols=73  Identities=11%  Similarity=0.064  Sum_probs=44.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhccccccccc--ceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYF--QCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN  233 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F--~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k  233 (501)
                      ...+-|+|..|+|||+|++.+++.-  .+..  ...+++      +..++...+...+...       ....+.+.+++ 
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-  199 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYV------SSEKFTNDFVNALRNN-------KMEEFKEKYRS-  199 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEE------EHHHHHHHHHHHHHcC-------CHHHHHHHHHh-
Confidence            3567899999999999999999643  2222  122344      3445555666655432       12334444433 


Q ss_pred             eEEEEEecCCC
Q 010799          234 RYLVVIINART  244 (501)
Q Consensus       234 r~LlVlDdv~~  244 (501)
                      .-+|+|||+..
T Consensus       200 ~dlLiiDDi~~  210 (405)
T TIGR00362       200 VDLLLIDDIQF  210 (405)
T ss_pred             CCEEEEehhhh
Confidence            23788999963

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.015  Score=57.56  Aligned_cols=100  Identities=22%  Similarity=0.284  Sum_probs=62.0

Q ss_pred             chhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799          329 ENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV  408 (501)
Q Consensus       329 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~  408 (501)
                      ...+.++.+.|..+--.-.++.|-|-||+|||||..+++.  +..... .+++    ++...+...+-.. +..|+....
T Consensus        76 ~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLY----VsGEES~~QiklR-A~RL~~~~~  147 (456)
T COG1066          76 STGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLY----VSGEESLQQIKLR-ADRLGLPTN  147 (456)
T ss_pred             cCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEE----EeCCcCHHHHHHH-HHHhCCCcc
Confidence            4456667776744333336999999999999999999988  555444 4444    5555555443222 233433222


Q ss_pred             C----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799          409 D----EESSLDDLESEFTGILYEKRYLVVLDDVHS  439 (501)
Q Consensus       409 ~----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~  439 (501)
                      .    ...+.+++.+.+.+   .++-++|+|.++.
T Consensus       148 ~l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT  179 (456)
T COG1066         148 NLYLLAETNLEDIIAELEQ---EKPDLVVIDSIQT  179 (456)
T ss_pred             ceEEehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence            1    23455555555554   6788999999875

>PRK06762 hypothetical protein; Provisional

Probab=96.35  E-value=0.016  Score=51.22  Aligned_cols=22  Identities=45%  Similarity=0.703  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~   24 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQE   24 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999887

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.34  E-value=0.012  Score=54.37  Aligned_cols=86  Identities=13%  Similarity=-0.034  Sum_probs=51.9

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh-c---CC----CCcC---cchH
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV-G---GS----KVEK---QLDP  222 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~-~---~~----~~~~---~~~~  222 (501)
                      +.-.++-|+|.+|+|||+|+.++..+  ....-...+|+.... ++...+.+. .+.. .   .+    ...+   ....
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~   85 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA   85 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence            35688999999999999999887643  223346788998876 666655543 2221 0   00    0001   1112


Q ss_pred             HHHHHHHccC-CeEEEEEecCC
Q 010799          223 QKKLRKLFTE-NRYLVVIINAR  243 (501)
Q Consensus       223 ~~~l~~~l~~-kr~LlVlDdv~  243 (501)
                      ...+.+.+.. +--+||+|.+.
T Consensus        86 ~~~l~~~~~~~~~~lvVIDSis  107 (209)
T TIGR02237        86 IQKTSKFIDRDSASLVVVDSFT  107 (209)
T ss_pred             HHHHHHHHhhcCccEEEEeCcH
Confidence            4445555544 34589999974

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.34  E-value=0.015  Score=52.37  Aligned_cols=55  Identities=20%  Similarity=0.254  Sum_probs=32.9

Q ss_pred             HHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          419 SEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       419 ~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      -.+...+-.++-++++|+--.   ......+...+... ...+..||++|.+......+
T Consensus       113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~~~~~  170 (182)
T cd03215         113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL-ADAGKAVLLISSELDELLGL  170 (182)
T ss_pred             HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHh
Confidence            345556666778999999754   22233333333321 12367899999987655543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=96.33  E-value=0.14  Score=49.96  Aligned_cols=140  Identities=7%  Similarity=0.087  Sum_probs=83.5

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc------ccCC-c-cceeEEEEeCCCCChHHHHHHHHHHh
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT------KKNF-P-CRAWANVYVSQDFDMRSVFADILRQL  403 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~------~~~f-~-~~~w~~v~~~~~~~~~~~~~~i~~~l  403 (501)
                      ++.+...+.. +.-.+...++|..|.||+++|..+.+..-.      .... + ...+  +.....              
T Consensus         5 ~~~l~~~i~~-~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~--~d~~g~--------------   67 (299)
T PRK07132          5 IKFLDNSATQ-NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL--FDIFDK--------------   67 (299)
T ss_pred             HHHHHHHHHh-CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE--eccCCC--------------
Confidence            3445555532 234478889999999999999998773200      1111 0 1111  110010              


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCC-hHHHhhcC
Q 010799          404 TQDEVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITRE-AYVARSFS  475 (501)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~-~~~~~~~~  475 (501)
                             ....+++.....+.-     .+.+-++|+|+++..  ...+.|+..+..  .++.+.+|++|.+ ..+...+.
T Consensus        68 -------~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~  138 (299)
T PRK07132         68 -------DLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIV  138 (299)
T ss_pred             -------cCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHH
Confidence                   112222322222221     146678888998763  457788888888  6777877776644 44444444


Q ss_pred             CCCcceeCCCCChHHHHHHHHH
Q 010799          476 PSIFLHQLRPLNEEESGKLFQR  497 (501)
Q Consensus       476 ~~~~~~~l~~L~~~ea~~Lf~~  497 (501)
                      +...++++.+++.++..+.+..
T Consensus       139 SRc~~~~f~~l~~~~l~~~l~~  160 (299)
T PRK07132        139 SRCQVFNVKEPDQQKILAKLLS  160 (299)
T ss_pred             hCeEEEECCCCCHHHHHHHHHH
Confidence            4678999999999999877765

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.33  E-value=0.0047  Score=53.07  Aligned_cols=100  Identities=17%  Similarity=0.095  Sum_probs=50.6

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCc------c-----hHHHHH
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQ------L-----DPQKKL  226 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~------~-----~~~~~l  226 (501)
                      +|-+.|++|+||||+|+.+.....         ++.+    +...+..    .+........      .     .+...+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~---------~~~i----~~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG---------AVVI----SQDEIRR----RLAGEDPPSPSDYIEAEERAYQILNAAI   63 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST---------EEEE----EHHHHHH----HHCCSSSGCCCCCHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC---------CEEE----eHHHHHH----HHcccccccchhHHHHHHHHHHHHHHHH
Confidence            578899999999999999873222         2222    2333333    2322111110      0     013455


Q ss_pred             HHHccCCeEEEEEec-CCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          227 RKLFTENRYLVVIIN-ARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       227 ~~~l~~kr~LlVlDd-v~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      ...++.... +|+|+ .+....+..+...+...+....+|..+-+.+++.
T Consensus        64 ~~~l~~g~~-~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~  112 (143)
T PF13671_consen   64 RKALRNGNS-VVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLR  112 (143)
T ss_dssp             HHHHHTT-E-EEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHH
T ss_pred             HHHHHcCCC-ceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHH
Confidence            566655555 56675 4555555555554443332344555554555543

...

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.33  E-value=0.046  Score=55.19  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++.++|+.|+||||.+..++.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999998887776

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.33  E-value=0.015  Score=54.31  Aligned_cols=49  Identities=10%  Similarity=-0.101  Sum_probs=35.4

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhccccccccc------ceeEEEEcCCCCCHHHHH
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEYF------QCRAWVPVPEELERRELV  204 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F------~~~~wv~vs~~~~~~~l~  204 (501)
                      +.-.++.|+|.+|+|||+|+.++.-..  ...-      ...+|+.....++...+.
T Consensus        17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~   71 (226)
T cd01393          17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV   71 (226)
T ss_pred             cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH
Confidence            346789999999999999998886322  1222      456888888877766554

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=96.32  E-value=0.0069  Score=57.75  Aligned_cols=90  Identities=14%  Similarity=0.125  Sum_probs=54.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC-ChHHHHHHHHHHhccCC------CCCCCCHH----
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF-DMRSVFADILRQLTQDE------VDEESSLD----  415 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----  415 (501)
                      ..++|.|.+|+|||+|+..+++  ....+|...++ ++-+.... .+.++..++...-..+.      ..+.....    
T Consensus        70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V-~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~  146 (274)
T cd01133          70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSV-FAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV  146 (274)
T ss_pred             CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEE-EEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence            5889999999999999999998  66656655444 14444433 44555555544211110      00111111    


Q ss_pred             -HHHHHHHHhc--C-CceEEEEEcCCCC
Q 010799          416 -DLESEFTGIL--Y-EKRYLVVLDDVHS  439 (501)
Q Consensus       416 -~~~~~l~~~l--~-~~r~LlVlDnv~~  439 (501)
                       ...-.+.+++  + ++.+||++|++-.
T Consensus       147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr  174 (274)
T cd01133         147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR  174 (274)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence             2234456666  2 6799999999865

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=96.31  E-value=0.011  Score=53.14  Aligned_cols=120  Identities=16%  Similarity=0.042  Sum_probs=65.8

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEeCCCCChHHHHHHHH--HHh--ccCCCCCCCC------
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYVSQDFDMRSVFADIL--RQL--TQDEVDEESS------  413 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~~~~~~~~~~~~~i~--~~l--~~~~~~~~~~------  413 (501)
                      ....|.|+|..|-|||+.|...+.  +...+=..+.. -.+.-...+.....+..+-  ...  .........+      
T Consensus        21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~   98 (191)
T PRK05986         21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA   98 (191)
T ss_pred             cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence            346999999999999999988765  33222222222 0022221233333333310  000  0000000111      


Q ss_pred             -HHHHHHHHHHhcCCceE-EEEEcCCCCh-----hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          414 -LDDLESEFTGILYEKRY-LVVLDDVHSP-----GAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       414 -~~~~~~~l~~~l~~~r~-LlVlDnv~~~-----~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                       ........++.+.+.+| |+|||++-..     -+.+++...+..  .+++..||+|-|+.
T Consensus        99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~--rp~~~evVlTGR~~  158 (191)
T PRK05986         99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA--RPGMQHVVITGRGA  158 (191)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc--CCCCCEEEEECCCC
Confidence             12334555666655554 9999998652     334566777766  67789999999986

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.31  E-value=0.039  Score=51.87  Aligned_cols=61  Identities=18%  Similarity=0.247  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          411 ESSLDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       411 ~~~~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .+.-+...-.+.+.|..++=||+||+--.      ...+-.++..+..    .|..||++|.+-.......
T Consensus       140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~----eg~tIl~vtHDL~~v~~~~  206 (254)
T COG1121         140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ----EGKTVLMVTHDLGLVMAYF  206 (254)
T ss_pred             cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCcHHhHhhC
Confidence            34455666778888889999999998432      2334445555554    3999999999977555543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.30  E-value=0.019  Score=50.34  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=63.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      .+++|.|+.|.|||||.+.+..  ... ...+.++  +.........  .......+..-.  +.+.-+...-.+...+.
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g--~~~-~~~G~i~--~~~~~~~~~~--~~~~~~~i~~~~--qlS~G~~~r~~l~~~l~   96 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAG--LLK-PTSGEIL--IDGKDIAKLP--LEELRRRIGYVP--QLSGGQRQRVALARALL   96 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC--CCC-CCccEEE--ECCEEcccCC--HHHHHhceEEEe--eCCHHHHHHHHHHHHHh
Confidence            6999999999999999999987  333 2344444  3221111100  001111111100  02222333444556666


Q ss_pred             CceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          427 EKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       427 ~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      ..+-++++|+...   ......+...+... ...+..+|++|.+......+
T Consensus        97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~-~~~~~tii~~sh~~~~~~~~  146 (157)
T cd00267          97 LNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHDPELAELA  146 (157)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHh
Confidence            6678999999764   22333343433321 11257899999988776664

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.29  E-value=0.41  Score=48.03  Aligned_cols=86  Identities=15%  Similarity=-0.031  Sum_probs=47.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc-CCCCCHHHHHHHHHHHhcCCCCc--CcchHHHHHHHHccC
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV-PEELERRELVTDILKQVGGSKVE--KQLDPQKKLRKLFTE  232 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v-s~~~~~~~l~~~i~~~~~~~~~~--~~~~~~~~l~~~l~~  232 (501)
                      -.++.++|..|+||||++.++......+.....+..|+. .......+-++...+.++.+...  ...++...+ ..+.+
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~~  215 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELRN  215 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhcC
Confidence            468999999999999999888743221111223344432 22234455566666666654322  222333333 34445


Q ss_pred             CeEEEEEecCC
Q 010799          233 NRYLVVIINAR  243 (501)
Q Consensus       233 kr~LlVlDdv~  243 (501)
                      +. +|++|..-
T Consensus       216 ~D-lVLIDTaG  225 (374)
T PRK14722        216 KH-MVLIDTIG  225 (374)
T ss_pred             CC-EEEEcCCC
Confidence            54 45588874

>PRK05973 replicative DNA helicase; Provisional

Probab=96.29  E-value=0.018  Score=54.00  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=58.7

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC----------CCCCC
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV----------DEESS  413 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~  413 (501)
                      ..-..+.|.|.+|+|||+++.+++..  ...+-..+++  ++...  +...+...+... +.+..          .....
T Consensus        62 ~~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vly--fSlEe--s~~~i~~R~~s~-g~d~~~~~~~~~~d~~d~~~  134 (237)
T PRK05973         62 KPGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVF--FTLEY--TEQDVRDRLRAL-GADRAQFADLFEFDTSDAIC  134 (237)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEE--EEEeC--CHHHHHHHHHHc-CCChHHhccceEeecCCCCC
Confidence            33469999999999999999998763  2222233445  55432  233333333221 21110          01123


Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                      .++....+...  .+.-++|+|.+...      ..+..+...|.......|..||+|+.-.
T Consensus       135 ~~~ii~~l~~~--~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~  193 (237)
T PRK05973        135 ADYIIARLASA--PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQID  193 (237)
T ss_pred             HHHHHHHHHHh--hCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            33344444431  23458999997532      1122222212221124588888887543

>PRK07667 uridine kinase; Provisional

Probab=96.28  E-value=0.0045  Score=56.45  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+.+.+.|....+...+|+|-|.+|.||||+|+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~   39 (193)
T PRK07667          2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE   39 (193)
T ss_pred             CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35677777876666678999999999999999999984

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.28  E-value=0.051  Score=51.55  Aligned_cols=127  Identities=13%  Similarity=0.146  Sum_probs=64.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeE--E---EEeC----CCCChHHHH--------------HHHHHHh
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWA--N---VYVS----QDFDMRSVF--------------ADILRQL  403 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~--~---v~~~----~~~~~~~~~--------------~~i~~~l  403 (501)
                      .+++|.|+.|+|||||++.++..  ....-..+.|+  .   +.-.    ...++.+.+              .+++..+
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~--~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l  103 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGV--LKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL  103 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC--CcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence            59999999999999999998773  22111111110  0   1110    011222222              1122222


Q ss_pred             ccCCC-----CCCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          404 TQDEV-----DEESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       404 ~~~~~-----~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .....     ...+.-+...-.+...|..++-+++||+--.   ......+...+.......+..||++|.+......+.
T Consensus       104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~  183 (246)
T cd03237         104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA  183 (246)
T ss_pred             CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            22110     0122223334445556666778999999754   222233333333310123678999999987666543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=96.28  E-value=0.019  Score=59.78  Aligned_cols=72  Identities=10%  Similarity=0.101  Sum_probs=44.2

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccc--eeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQ--CRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN  233 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~--~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k  233 (501)
                      ..-+-|+|.+|+|||+|++.+.+.  +...+.  ..+++      +..++...+...+...       ....+.+.+++ 
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-  211 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYV------TSEKFTNDFVNALRNN-------TMEEFKEKYRS-  211 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEE------EHHHHHHHHHHHHHcC-------cHHHHHHHHhc-
Confidence            456889999999999999999964  333332  22344      3444555555555321       12344444542 


Q ss_pred             eEEEEEecCC
Q 010799          234 RYLVVIINAR  243 (501)
Q Consensus       234 r~LlVlDdv~  243 (501)
                      --+|+|||+.
T Consensus       212 ~dlLiiDDi~  221 (450)
T PRK00149        212 VDVLLIDDIQ  221 (450)
T ss_pred             CCEEEEehhh
Confidence            3488999995

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.28  E-value=0.016  Score=56.94  Aligned_cols=66  Identities=11%  Similarity=-0.043  Sum_probs=44.9

Q ss_pred             HHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc----cccceeEEEEcCCCCCHHHHHHHHHHHhcCC
Q 010799          148 FLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK----EYFQCRAWVPVPEELERRELVTDILKQVGGS  214 (501)
Q Consensus       148 ~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~----~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~  214 (501)
                      +|..+=+.-+++-|+|.+|+|||+|+.++.-.....    ..=...+||.....|+.+.+.+ ++++++.+
T Consensus        88 lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d  157 (313)
T TIGR02238        88 ILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD  157 (313)
T ss_pred             HhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence            444333356788899999999999998765322221    1113678999999999888764 56666543

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.27  E-value=0.022  Score=51.39  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=24.9

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV  386 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~  386 (501)
                      ++.|.|++|+|||+|+.+++..  ....=..++|  ++.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~--~s~   35 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLY--VTL   35 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEE--EEC
Confidence            3679999999999999998763  2222244566  654

A related protein is found in archaea.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.27  E-value=0.016  Score=51.89  Aligned_cols=112  Identities=19%  Similarity=0.136  Sum_probs=58.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhccc-cc--cc---ccceeEEEEcCCCCCHHHHHHHHHHHhcCCC---CcC--cch---
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECE-TV--KE---YFQCRAWVPVPEELERRELVTDILKQVGGSK---VEK--QLD---  221 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~-~v--~~---~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~---~~~--~~~---  221 (501)
                      -.+++|+|..|+|||||.+.+..+. ++  ..   .|...-...+.+        .+.+..++...   ...  ..+   
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~~~~~~~~LSgGq   92 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLTLGQKLSTLSGGE   92 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccccCCCcCcCCHHH
Confidence            3588999999999999999886321 11  11   111111122222        34566665432   111  111   


Q ss_pred             -HHHHHHHHccCC--eEEEEEecCCCh---hHHHHHhhcCCC-CCCCcEEEEEeccccchh
Q 010799          222 -PQKKLRKLFTEN--RYLVVIINARTP---DIWDILKYLFPN-SSNGSRVILSFQEADAAR  275 (501)
Q Consensus       222 -~~~~l~~~l~~k--r~LlVlDdv~~~---~~~~~l~~~~~~-~~~gs~iivTtr~~~va~  275 (501)
                       -.-.+...+-.+  .-+++||+..+.   ...+.+...+.. ...|..||++|++.+.+.
T Consensus        93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~  153 (176)
T cd03238          93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS  153 (176)
T ss_pred             HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence             122344444445  567888997542   222333322221 124677999999887654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK08233 hypothetical protein; Provisional

Probab=96.27  E-value=0.012  Score=52.82  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=21.6

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ..+|+|.|++|+||||||..++..
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            368999999999999999999873

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.27  E-value=0.003  Score=59.14  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=68.0

Q ss_pred             HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC-------
Q 010799          335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE-------  407 (501)
Q Consensus       335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~-------  407 (501)
                      |.++|..+=+...++.|.|++|+|||+++.+++.. ...+.=..++|  ++...  +...+.+.+. .++.+.       
T Consensus         8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vly--vs~ee--~~~~l~~~~~-s~g~d~~~~~~~g   81 (226)
T PF06745_consen    8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLY--VSFEE--PPEELIENMK-SFGWDLEEYEDSG   81 (226)
T ss_dssp             HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEE--EESSS---HHHHHHHHH-TTTS-HHHHHHTT
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEE--EEecC--CHHHHHHHHH-HcCCcHHHHhhcC
Confidence            44445343345579999999999999999997752 22220234456  55533  3344433332 222110       


Q ss_pred             -------CCC-----CCCHHHHHHHHHHhcCC-ceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCCCEEEEE
Q 010799          408 -------VDE-----ESSLDDLESEFTGILYE-KRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       408 -------~~~-----~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~~~iIiT  464 (501)
                             ...     ..+.+.+...+.+.+.. +...+|+|.+...          ..+..+...+..    .++.+|+|
T Consensus        82 ~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~----~~~t~llt  157 (226)
T PF06745_consen   82 KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKS----RGVTTLLT  157 (226)
T ss_dssp             SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHH----TTEEEEEE
T ss_pred             CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHH----CCCEEEEE
Confidence                   001     34677778888877765 3478999986432          223334444433    46667777


Q ss_pred             eC
Q 010799          465 TR  466 (501)
Q Consensus       465 tR  466 (501)
                      +.
T Consensus       158 ~~  159 (226)
T PF06745_consen  158 SE  159 (226)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.27  E-value=0.0096  Score=62.02  Aligned_cols=48  Identities=10%  Similarity=-0.011  Sum_probs=36.5

Q ss_pred             ccccccchhhHHHHHHHHhcC-----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRS-----------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.++.|.+..++++.+.+...           -...+-+-++|++|+|||++|+.+++.
T Consensus       181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e  239 (512)
T TIGR03689       181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS  239 (512)
T ss_pred             HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence            356888999999888876421           112345788999999999999999964

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.25  E-value=0.0072  Score=56.55  Aligned_cols=39  Identities=21%  Similarity=0.461  Sum_probs=29.4

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +..++.+.+.....+..+|+|+|+||+|||||.-.+...
T Consensus        14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~   52 (266)
T PF03308_consen   14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRE   52 (266)
T ss_dssp             HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence            455666666666667889999999999999999887763

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PTZ00494 tuzin-like protein; Provisional

Probab=96.23  E-value=0.18  Score=50.80  Aligned_cols=166  Identities=11%  Similarity=0.121  Sum_probs=100.4

Q ss_pred             cccceeecchhHHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ....||.|+++=..+.+.|.+ ....+|++++.|.-|+|||+|.+...+.    ++ -..++  |.+...   ++.++.+
T Consensus       369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk----E~-~paV~--VDVRg~---EDtLrsV  438 (664)
T PTZ00494        369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV----EG-VALVH--VDVGGT---EDTLRSV  438 (664)
T ss_pred             ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH----cC-CCeEE--EEecCC---cchHHHH
Confidence            456799999999988888855 3456799999999999999999987762    22 23456  666544   3456677


Q ss_pred             HHHhccCCCCC-CCCHHHHH---HHHHHhcCCceEEEEE--cCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh
Q 010799          400 LRQLTQDEVDE-ESSLDDLE---SEFTGILYEKRYLVVL--DDVHSP-GAWYDLKRIFSPQASPIGSRVILITREAYVAR  472 (501)
Q Consensus       400 ~~~l~~~~~~~-~~~~~~~~---~~l~~~l~~~r~LlVl--Dnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~  472 (501)
                      ...|+.+.... .+-++-+.   ..-+....++.-+||+  -+-.+. ...++... |-.  ...-|+|++----+.+.-
T Consensus       439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-Lac--DrRlCHvv~EVplESLT~  515 (664)
T PTZ00494        439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVS--DCQACHIVLAVPMKALTP  515 (664)
T ss_pred             HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHc--cchhheeeeechHhhhch
Confidence            77777764421 11222222   2333334455555554  333332 22223222 222  234577877654443222


Q ss_pred             hc--CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          473 SF--SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       473 ~~--~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..  -+.-..|.+++++.++|.++-+..+
T Consensus       516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l  544 (664)
T PTZ00494        516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL  544 (664)
T ss_pred             hhccCccceeEecCCcCHHHHHHHHhccc
Confidence            11  1245589999999999999877654

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.23  E-value=0.067  Score=49.93  Aligned_cols=64  Identities=9%  Similarity=0.087  Sum_probs=36.9

Q ss_pred             HHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCCCCcceeCC
Q 010799          418 ESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLR  484 (501)
Q Consensus       418 ~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~~~~~~~l~  484 (501)
                      .-.+...+-.++-++++|+--+   ......+...+... ...|..||++|.+......+.  ..++.+.
T Consensus       157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vsH~~~~~~~~~--d~i~~~~  223 (224)
T TIGR02324       157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA-KARGAALIGIFHDEEVRELVA--DRVMDVT  223 (224)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhc--ceeEecC
Confidence            3344444555677999999754   23333444433331 123778999999987765443  3455443

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.22  E-value=0.05  Score=58.54  Aligned_cols=46  Identities=11%  Similarity=-0.005  Sum_probs=37.4

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus        15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk   60 (620)
T PRK14948         15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAK   60 (620)
T ss_pred             HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHH
Confidence            4678999999999999998642 224567899999999999998864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.21  E-value=0.063  Score=49.96  Aligned_cols=125  Identities=18%  Similarity=0.244  Sum_probs=67.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHccccc----------------------ccCCcccee----EEEEeCCC------CChHH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYT----------------------KKNFPCRAW----ANVYVSQD------FDMRS  394 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~----------------------~~~f~~~~w----~~v~~~~~------~~~~~  394 (501)
                      ..|+|.|++|+|||||-+.++.-...                      -+++.--.|    +||...-.      ..-..
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~  109 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE  109 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence            59999999999999999988642110                      011122234    22222111      01122


Q ss_pred             HHHHHHHHhccCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------hhHHHHHHhcCCCCCCCCCEEE
Q 010799          395 VFADILRQLTQDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHSP-------GAWYDLKRIFSPQASPIGSRVI  462 (501)
Q Consensus       395 ~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------~~~~~l~~~l~~~~~~~~~~iI  462 (501)
                      ...++++..+.....     +.+.-....-.+.+.|..++-+|.+|+--..       .-.+.+...+..    .+..|+
T Consensus       110 ~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~----~~~Tvl  185 (248)
T COG1116         110 RAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE----TRKTVL  185 (248)
T ss_pred             HHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh----hCCEEE
Confidence            344555554443322     3333344445566666677778889985441       223344444333    456778


Q ss_pred             EEeCChHHHhhcC
Q 010799          463 LITREAYVARSFS  475 (501)
Q Consensus       463 iTtR~~~~~~~~~  475 (501)
                      +.|.+-.-+-.++
T Consensus       186 lVTHdi~EAv~Ls  198 (248)
T COG1116         186 LVTHDVDEAVYLA  198 (248)
T ss_pred             EEeCCHHHHHhhh
Confidence            8887766555544

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.21  E-value=0.0095  Score=53.50  Aligned_cols=23  Identities=22%  Similarity=-0.006  Sum_probs=20.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+++|+|..|.|||||++.+..-
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            57899999999999999999753

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK10867 signal recognition particle protein; Provisional

Probab=96.20  E-value=0.048  Score=55.80  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.1

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.++.++|++|+||||++..++.
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999997766655

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=96.20  E-value=0.041  Score=59.50  Aligned_cols=46  Identities=11%  Similarity=-0.009  Sum_probs=37.2

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+.+..+. -.+.+-++|+.|+||||+|+.+..
T Consensus        17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk   62 (725)
T PRK07133         17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN   62 (725)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence            4678999999999999997653 234567899999999999988853

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=96.19  E-value=0.016  Score=56.61  Aligned_cols=98  Identities=17%  Similarity=0.120  Sum_probs=60.7

Q ss_pred             HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799          333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--  409 (501)
Q Consensus       333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--  409 (501)
                      ..|...|. .+=+.-+++-|+|+.|+||||||..++.  .....-..++|  +...+..+.     ..+..++.+...  
T Consensus        39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~--ID~e~~ld~-----~~a~~lGvdl~rll  109 (322)
T PF00154_consen   39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAF--IDAEHALDP-----EYAESLGVDLDRLL  109 (322)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEE--EESSS---H-----HHHHHTT--GGGEE
T ss_pred             cccchhhccCccccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEE--ecCcccchh-----hHHHhcCccccceE
Confidence            34555554 2334557999999999999999999887  44444455778  887665543     334444443322  


Q ss_pred             --CCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC
Q 010799          410 --EESSLDDLESEFTGILYEK-RYLVVLDDVHS  439 (501)
Q Consensus       410 --~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~  439 (501)
                        ++.+.++....+...++.. .-++|+|.+..
T Consensus       110 v~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a  142 (322)
T PF00154_consen  110 VVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA  142 (322)
T ss_dssp             EEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred             EecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence              3456677777777777654 45899999765

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.19  E-value=0.016  Score=52.85  Aligned_cols=23  Identities=39%  Similarity=0.634  Sum_probs=20.5

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++.|.|++|+|||+++..+..
T Consensus        18 ~~~~~l~G~aGtGKT~~l~~~~~   40 (196)
T PF13604_consen   18 DRVSVLQGPAGTGKTTLLKALAE   40 (196)
T ss_dssp             CSEEEEEESTTSTHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCHHHHHHHHHH
Confidence            37899999999999999988776

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.19  E-value=0.032  Score=51.36  Aligned_cols=109  Identities=10%  Similarity=0.109  Sum_probs=67.4

Q ss_pred             cccccccccccccchhhHHHHHHHHhc--CCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHH
Q 010799          125 ENVDSAKKTGILDLNKEVNKLADFLIR--SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRE  202 (501)
Q Consensus       125 ~~~~~~~~~~~vg~~~~~~~l~~~L~~--~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~  202 (501)
                      +......-..++|.+..++.|++--..  .+..-.-+-.||..|.||++|++.+++  +..+..-..+  -|.+.    +
T Consensus        52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLV--EV~k~----d  123 (287)
T COG2607          52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLV--EVDKE----D  123 (287)
T ss_pred             CCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEE--EEcHH----H
Confidence            334444567899999988888764331  112334567899999999999999985  2323322222  22111    1


Q ss_pred             HHHHHHHHhcCCCCcCcchHHHHHHHHcc--CCeEEEEEecCC---ChhHHHHHhhcCCCC
Q 010799          203 LVTDILKQVGGSKVEKQLDPQKKLRKLFT--ENRYLVVIINAR---TPDIWDILKYLFPNS  258 (501)
Q Consensus       203 l~~~i~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~---~~~~~~~l~~~~~~~  258 (501)
                                       ......|.+.|+  ..||.|..||+.   ..+.++.|+..+..+
T Consensus       124 -----------------l~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~  167 (287)
T COG2607         124 -----------------LATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG  167 (287)
T ss_pred             -----------------HhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence                             111344555553  578999999984   355688888887643

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=96.18  E-value=0.047  Score=54.01  Aligned_cols=122  Identities=14%  Similarity=0.047  Sum_probs=70.4

Q ss_pred             ccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccccc-------------------ccceeEEEEc
Q 010799          134 GILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKE-------------------YFQCRAWVPV  194 (501)
Q Consensus       134 ~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~-------------------~F~~~~wv~v  194 (501)
                      .++|-+....++..+..........+-++|++|+||||+|..+.+.---..                   ..+-...+.-
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~   81 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP   81 (325)
T ss_pred             CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence            456777788888888875442333588999999999999888764211000                   0111222222


Q ss_pred             CCCCC---HHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEec
Q 010799          195 PEELE---RRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQ  269 (501)
Q Consensus       195 s~~~~---~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr  269 (501)
                      |....   ..+.++++.+.+.....              .++.-+++||++..  .+.-+.+...+..-...+.+|++|.
T Consensus        82 s~~~~~~i~~~~vr~~~~~~~~~~~--------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n  147 (325)
T COG0470          82 SDLRKIDIIVEQVRELAEFLSESPL--------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN  147 (325)
T ss_pred             cccCCCcchHHHHHHHHHHhccCCC--------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence            22222   23333333333322211              25667888999875  3334556666655567788888886

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.18  E-value=0.041  Score=50.58  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=34.1

Q ss_pred             HHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          418 ESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       418 ~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .-.+...+-.++-++++|+--+   ......+...+... ...+..||++|.+......+.
T Consensus       137 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~i~~~~  196 (204)
T PRK13538        137 RVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH-AEQGGMVILTTHQDLPVASDK  196 (204)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HHCCCEEEEEecChhhhccCC
Confidence            3444555556677999999764   22233343333321 123678999999887776664

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.18  E-value=0.0066  Score=57.61  Aligned_cols=39  Identities=18%  Similarity=0.384  Sum_probs=31.2

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccc
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESS  370 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~  370 (501)
                      -.+|...+.....+..+|+|+|.||+|||||.-.+..+.
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            345666666667788899999999999999998877743

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.18  E-value=0.026  Score=59.85  Aligned_cols=98  Identities=10%  Similarity=0.160  Sum_probs=54.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhccccccccc-c-eeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCe
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYF-Q-CRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENR  234 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F-~-~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr  234 (501)
                      ..+-|+|..|+|||.|++.+.+..  ...+ . ..+++      +..++..++...+...       ....+++.+++ -
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a--~~~~~g~~V~Yi------taeef~~el~~al~~~-------~~~~f~~~y~~-~  378 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYA--RRLYPGTRVRYV------SSEEFTNEFINSIRDG-------KGDSFRRRYRE-M  378 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEe------eHHHHHHHHHHHHHhc-------cHHHHHHHhhc-C
Confidence            458899999999999999999643  2222 1 22333      4455665655554321       12334444443 2


Q ss_pred             EEEEEecCCC---hhHHHH-HhhcCCC-CCCCcEEEEEecc
Q 010799          235 YLVVIINART---PDIWDI-LKYLFPN-SSNGSRVILSFQE  270 (501)
Q Consensus       235 ~LlVlDdv~~---~~~~~~-l~~~~~~-~~~gs~iivTtr~  270 (501)
                      =+|+|||+..   .+.|.. +...+.. ...|..||+||..
T Consensus       379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~  419 (617)
T PRK14086        379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR  419 (617)
T ss_pred             CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            4788999853   233322 2222211 1235568887764

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=96.18  E-value=0.045  Score=56.68  Aligned_cols=46  Identities=17%  Similarity=0.029  Sum_probs=37.2

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus        16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk   61 (451)
T PRK06305         16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK   61 (451)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999997542 235577899999999999988753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.17  E-value=0.094  Score=45.68  Aligned_cols=22  Identities=32%  Similarity=0.652  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -.++|+||+|+|||||-+.++.
T Consensus        30 e~iaitGPSG~GKStllk~va~   51 (223)
T COG4619          30 EFIAITGPSGCGKSTLLKIVAS   51 (223)
T ss_pred             ceEEEeCCCCccHHHHHHHHHh
Confidence            4799999999999999999977

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.16  E-value=0.045  Score=54.79  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++++|+.|+||||++..++.
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36999999999999999998887

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.16  E-value=0.0056  Score=52.69  Aligned_cols=22  Identities=36%  Similarity=0.718  Sum_probs=20.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +|+|.|++|+||||+|+.++.+
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~   23 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEH   23 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHH
Confidence            6899999999999999999884

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.16  E-value=0.054  Score=51.92  Aligned_cols=128  Identities=15%  Similarity=0.085  Sum_probs=69.7

Q ss_pred             hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEE---cCCCCCHHHHHHHHHHHhcCCCCc
Q 010799          141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVP---VPEELERRELVTDILKQVGGSKVE  217 (501)
Q Consensus       141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~---vs~~~~~~~l~~~i~~~~~~~~~~  217 (501)
                      ..+.++..|... ....-++|+|..|+|||||.+.+....   ......+++.   +..--...++...+ ..+....-.
T Consensus        97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q~~~~  171 (270)
T TIGR02858        97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIVDERSEIAGCV-NGVPQHDVG  171 (270)
T ss_pred             cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecchhHHHHHHHh-ccccccccc
Confidence            445555555543 245789999999999999999998422   2222222221   11000122332111 111111000


Q ss_pred             C------cchHHHHHHHHcc-CCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799          218 K------QLDPQKKLRKLFT-ENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC  276 (501)
Q Consensus       218 ~------~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~  276 (501)
                      .      ...-..-+...+. -..-+|++|.+...+.+..+...+.   .|..||+||.+.++...
T Consensus       172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~  234 (270)
T TIGR02858       172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL  234 (270)
T ss_pred             ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence            0      0001222333333 4667899999988887777666553   47789999998877554

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.15  E-value=0.017  Score=51.88  Aligned_cols=123  Identities=16%  Similarity=0.238  Sum_probs=60.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhcc--CCCC--C-----------C
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQ--DEVD--E-----------E  411 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~--~~~~--~-----------~  411 (501)
                      .+++|.|+.|+|||||++.++..  .. ...+.+.  +.-........-.......+..  +...  .           .
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~--~~-~~~G~i~--~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l  101 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGL--EE-PDSGSIL--IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL  101 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC--CC-CCceEEE--ECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence            59999999999999999998762  21 1233232  1110000000000000011100  0000  0           1


Q ss_pred             CCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          412 SSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       412 ~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      +.-+...-.+...+..++-++++|+--.   ......+...+.......+..+|++|.+......+
T Consensus       102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~  167 (178)
T cd03229         102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL  167 (178)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            1123334445566666778999999654   22233343433331011257899999887766543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=96.15  E-value=0.18  Score=48.65  Aligned_cols=151  Identities=9%  Similarity=0.062  Sum_probs=78.8

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV  408 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~  408 (501)
                      ...++|...+..+ .-++...++|+.|+||+++|..++...-... ...|..|   .....+|+..        +.+...
T Consensus         4 ~~~~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~---~~~~HPD~~~--------i~p~~~   71 (290)
T PRK05917          4 AAWEALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKI---SQKIHPDIHE--------FSPQGK   71 (290)
T ss_pred             HHHHHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHH---hcCCCCCEEE--------EecCCC
Confidence            3456666666432 3346788999999999999998876321110 1111111   0000000000        000000


Q ss_pred             CCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCCCcc
Q 010799          409 DEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPSIFL  480 (501)
Q Consensus       409 ~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~~~~  480 (501)
                      ......+++ ..+.+.+.     +..-++|+|+++.  .+.++.|+..+-.  .+.++..|++|.+. .+...+.+.-..
T Consensus        72 ~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~SRcq~  148 (290)
T PRK05917         72 GRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRSRSLS  148 (290)
T ss_pred             CCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHhcceE
Confidence            001122222 22333332     3456888999986  5678899999888  67777777777664 444443334445


Q ss_pred             eeCCCC-----ChHHHHHHH
Q 010799          481 HQLRPL-----NEEESGKLF  495 (501)
Q Consensus       481 ~~l~~L-----~~~ea~~Lf  495 (501)
                      +.++++     +.+++..+.
T Consensus       149 ~~~~~~~~~~i~~~~~~~l~  168 (290)
T PRK05917        149 IHIPMEEKTLVSKEDIAYLI  168 (290)
T ss_pred             EEccchhccCCCHHHHHHHH
Confidence            556543     455555443

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.14  E-value=0.027  Score=49.19  Aligned_cols=40  Identities=25%  Similarity=0.049  Sum_probs=28.0

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCC
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE  199 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~  199 (501)
                      ++.|+|.+|+||||++..+....  ...-...+|+.....+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence            36799999999999999987532  22334566776665543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.14  E-value=0.043  Score=48.89  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++.+.|++|+||||++..++.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~   22 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLAL   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999988876

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.13  E-value=0.011  Score=53.59  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC-CCCCCCHHHHHHHHHHhc
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE-VDEESSLDDLESEFTGIL  425 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~l  425 (501)
                      ..++|.|+.|+||||+++.++.  .+.... ..+    .+............. .++.... ...........+.++..+
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~--~i~~~~-~~i----~ied~~E~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l   97 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLA--FIPPDE-RII----TIEDTAELQLPHPNW-VRLVTRPGNVEGSGEVTMADLLRSAL   97 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh--hcCCCC-CEE----EECCccccCCCCCCE-EEEEEecCCCCCCCccCHHHHHHHHh
Confidence            6899999999999999998877  333222 111    111111000000000 0000000 000112234556677777


Q ss_pred             CCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCE-EEEEeCChH
Q 010799          426 YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSR-VILITREAY  469 (501)
Q Consensus       426 ~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~-iIiTtR~~~  469 (501)
                      +..+=.++++++.+.+.+..+ ....     .|.. ++.|..-..
T Consensus        98 R~~pd~i~igEir~~ea~~~~-~a~~-----tGh~g~~~T~Ha~s  136 (186)
T cd01130          98 RMRPDRIIVGEVRGGEALDLL-QAMN-----TGHPGGMTTIHANS  136 (186)
T ss_pred             ccCCCEEEEEccCcHHHHHHH-HHHh-----cCCCCceeeecCCC
Confidence            777889999999987765533 3322     3444 555555444

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.13  E-value=0.024  Score=53.45  Aligned_cols=94  Identities=7%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcch
Q 010799          142 VNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLD  221 (501)
Q Consensus       142 ~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~  221 (501)
                      +..+.++......+...+-++|.+|+|||+||..+.+.-.-  .-...+++      +..+++..+-..+.. .   ...
T Consensus        85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~i------t~~~l~~~l~~~~~~-~---~~~  152 (244)
T PRK07952         85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLII------TVADIMSAMKDTFSN-S---ETS  152 (244)
T ss_pred             HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEE------EHHHHHHHHHHHHhh-c---ccc
Confidence            34444444332223456789999999999999999874322  11233444      345566555544421 1   111


Q ss_pred             HHHHHHHHccCCeEEEEEecCCC--hhHHH
Q 010799          222 PQKKLRKLFTENRYLVVIINART--PDIWD  249 (501)
Q Consensus       222 ~~~~l~~~l~~kr~LlVlDdv~~--~~~~~  249 (501)
                       ...+.+.+. +-=+|||||+-.  ...|+
T Consensus       153 -~~~~l~~l~-~~dlLvIDDig~~~~s~~~  180 (244)
T PRK07952        153 -EEQLLNDLS-NVDLLVIDEIGVQTESRYE  180 (244)
T ss_pred             -HHHHHHHhc-cCCEEEEeCCCCCCCCHHH
Confidence             223334454 344888999853  34454

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.11  E-value=0.051  Score=50.26  Aligned_cols=22  Identities=32%  Similarity=0.670  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||++.++.
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~G   47 (213)
T cd03235          26 EFLAIVGPNGAGKSTLLKAILG   47 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHcC
Confidence            5999999999999999999876

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.11  E-value=0.018  Score=57.53  Aligned_cols=113  Identities=16%  Similarity=0.184  Sum_probs=65.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      ..+.|.|+.|+||||+...+..  .+.......++   .+.++....  ... ...+..... .........+.++..++
T Consensus       123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~---tiEdp~E~~--~~~-~~~~i~q~e-vg~~~~~~~~~l~~~lr  193 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHII---TIEDPIEYV--HRN-KRSLINQRE-VGLDTLSFANALRAALR  193 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEE---EEcCChhhh--ccC-ccceEEccc-cCCCCcCHHHHHHHhhc
Confidence            6899999999999999998877  44444444444   222221110  000 000000000 01122345677888888


Q ss_pred             CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          427 EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       427 ~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      ..+=+|++|++.+.+.+......     ...|..++.|.........
T Consensus       194 ~~pd~i~vgEird~~~~~~~l~a-----a~tGh~v~~T~Ha~~~~~~  235 (343)
T TIGR01420       194 EDPDVILIGEMRDLETVELALTA-----AETGHLVFGTLHTNSAAQT  235 (343)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHH-----HHcCCcEEEEEcCCCHHHH
Confidence            88999999999987766554443     2346667777766554433

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.11  E-value=0.019  Score=53.70  Aligned_cols=48  Identities=8%  Similarity=-0.093  Sum_probs=35.0

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHH
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELV  204 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~  204 (501)
                      +.-.++-|+|.+|+|||+||.++...  ....-...+||+.. .++...+.
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~   68 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK   68 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH
Confidence            34678999999999999999888743  22334567899887 66665543

>CHL00176 ftsH cell division protein; Validated

Probab=96.09  E-value=0.024  Score=61.12  Aligned_cols=94  Identities=11%  Similarity=0.049  Sum_probs=53.0

Q ss_pred             ccccccchhhHHHHHHHH---hcCC-------CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHH
Q 010799          132 KTGILDLNKEVNKLADFL---IRSH-------SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERR  201 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L---~~~~-------~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~  201 (501)
                      -.++.|.++.++++.+.+   ...+       ...+-+-++|.+|+|||+||+.+.+...  .+     |+.++.    .
T Consensus       182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~----s  250 (638)
T CHL00176        182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG----S  250 (638)
T ss_pred             HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----H
Confidence            356888877766655544   3211       1244578999999999999999985332  12     333321    1


Q ss_pred             HHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCC
Q 010799          202 ELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINAR  243 (501)
Q Consensus       202 ~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~  243 (501)
                      ++..    ...+   .....+...+........++|+|||+.
T Consensus       251 ~f~~----~~~g---~~~~~vr~lF~~A~~~~P~ILfIDEID  285 (638)
T CHL00176        251 EFVE----MFVG---VGAARVRDLFKKAKENSPCIVFIDEID  285 (638)
T ss_pred             HHHH----Hhhh---hhHHHHHHHHHHHhcCCCcEEEEecch
Confidence            1111    1100   011122334445556677899999984

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.09  E-value=0.12  Score=53.10  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++++++|++|+||||++..++.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36999999999999998877765

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.08  E-value=0.056  Score=48.60  Aligned_cols=111  Identities=11%  Similarity=0.087  Sum_probs=0.0

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChH----HHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMR----SVFADILRQLTQDEVDEESSLDDLESEFTG  423 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~  423 (501)
                      +|.|.|++|+||||+|+.++.  +.     +...  ++.+.-..-.    .-....+..+.....  ..+.+.....+.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~--~~-----~~~~--is~~d~lr~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~ll~~   69 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVE--NF-----GFTH--LSAGDLLRAEIKSGSENGELIESMIKNGK--IVPSEVTVKLLKN   69 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHH--Hc-----CCeE--EECChHHHHHHhcCChHHHHHHHHHHCCC--cCCHHHHHHHHHH


Q ss_pred             hcCCc-eEEEEEcCC-CChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799          424 ILYEK-RYLVVLDDV-HSPGAWYDLKRIFSPQASPIGSRVILITREAYVA  471 (501)
Q Consensus       424 ~l~~~-r~LlVlDnv-~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~  471 (501)
                      .+... ..-+|||++ .+..+...+...+..  ...-..+|...-.....
T Consensus        70 ~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~--~~~~d~~i~l~~~~~~~  117 (183)
T TIGR01359        70 AIQADGSKKFLIDGFPRNEENLEAWEKLMDN--KVNFKFVLFFDCPEEVM  117 (183)
T ss_pred             HHhccCCCcEEEeCCCCCHHHHHHHHHHHhc--CCCCCEEEEEECCHHHH

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=96.08  E-value=0.079  Score=55.64  Aligned_cols=46  Identities=11%  Similarity=-0.043  Sum_probs=36.9

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|-+..+..|...+..+. -...+-++|..|+||||+|+.+.+
T Consensus        13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk   58 (535)
T PRK08451         13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR   58 (535)
T ss_pred             HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence            4679999999999999987553 334667899999999999987653

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.08  E-value=0.0055  Score=63.81  Aligned_cols=46  Identities=2%  Similarity=0.063  Sum_probs=39.3

Q ss_pred             cccccchhhHHHHHHHHh----cCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLI----RSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~----~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|.++.++++++.|.    .-+.+-+++.++|++|+||||||+.+.+
T Consensus        76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455         76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence            368999999999999993    2344568999999999999999999974

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.08  E-value=0.016  Score=55.35  Aligned_cols=88  Identities=17%  Similarity=0.107  Sum_probs=53.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccc---c-ceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-----------Cc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEY---F-QCRAWVPVPEELERRELVTDILKQVGGSKVE-----------KQ  219 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~---F-~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-----------~~  219 (501)
                      .-.+.=|+|.+|+|||.|+.++.-+..+...   . ...+|+.-...|....+. +|++..+.+..+           +.
T Consensus        37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~  115 (256)
T PF08423_consen   37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL  115 (256)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred             CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence            3467889999999999999777533332221   1 357899998889888775 566665433211           01


Q ss_pred             ch---HHHHHHHHcc-CCeEEEEEecCC
Q 010799          220 LD---PQKKLRKLFT-ENRYLVVIINAR  243 (501)
Q Consensus       220 ~~---~~~~l~~~l~-~kr~LlVlDdv~  243 (501)
                      .+   +...+...+. .+=-|||+|.+-
T Consensus       116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa  143 (256)
T PF08423_consen  116 EELLELLEQLPKLLSESKIKLIVIDSIA  143 (256)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred             HHHHHHHHHHHhhccccceEEEEecchH
Confidence            11   2333444443 344599999974

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.07  E-value=0.038  Score=51.61  Aligned_cols=51  Identities=20%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ  388 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~  388 (501)
                      .|.+.|..+=....++.|.|.+|+|||++|.+++.  .....=..++|  ++...
T Consensus         4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~--~~~~~g~~~~y--~s~e~   54 (224)
T TIGR03880         4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLY--QGLKNGEKAMY--ISLEE   54 (224)
T ss_pred             hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEE--EECCC
Confidence            34444533334457999999999999999999876  32222234556  65543

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.06  E-value=0.0097  Score=55.13  Aligned_cols=120  Identities=15%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHH
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--EESSLDDLESEFTG  423 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~  423 (501)
                      .+.+.|+|+.|.||||+.+.+...... .+-....|    +.. .. ...+.++...+......  ..+....-.+++..
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~----a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~  101 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP----ADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSK  101 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE----cCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence            489999999999999999887631111 11111122    100 00 00111111111111110  11122222233333


Q ss_pred             hc--CCceEEEEEcCCCChh---h----HHHHHHhcCCCCC-CCCCEEEEEeCChHHHhhc
Q 010799          424 IL--YEKRYLVVLDDVHSPG---A----WYDLKRIFSPQAS-PIGSRVILITREAYVARSF  474 (501)
Q Consensus       424 ~l--~~~r~LlVlDnv~~~~---~----~~~l~~~l~~~~~-~~~~~iIiTtR~~~~~~~~  474 (501)
                      .+  ...+.|++||+....-   +    ...+...+..  . ..+..+|+||.+..+....
T Consensus       102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~--~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK--RGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEcChHHHHHhh
Confidence            33  2568899999986521   1    1223333333  2 2245899999998877654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.06  E-value=0.39  Score=49.35  Aligned_cols=22  Identities=27%  Similarity=0.061  Sum_probs=18.8

Q ss_pred             eeEEEEEeeCChhhHHHHhhhh
Q 010799          156 LFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      -+++.++|.+|+||||++..+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA  242 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLA  242 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999877664

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.05  E-value=0.012  Score=53.74  Aligned_cols=30  Identities=37%  Similarity=0.577  Sum_probs=24.9

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccC
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKN  375 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~  375 (501)
                      .++.+|+|.|.+|+||||+|+.++.  .+...
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~   35 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVE   35 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence            4457999999999999999999988  55433

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.05  E-value=0.063  Score=53.52  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.0

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.++++++|+.|+||||++..++.
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347999999999999999888776

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.05  E-value=0.11  Score=52.55  Aligned_cols=48  Identities=15%  Similarity=0.222  Sum_probs=34.4

Q ss_pred             ceeecchhHHHHHHHh-hcC----C--CCceEEEEEecCCCChHHHHHHHHcccc
Q 010799          324 AVVSMENDILKLAKLT-LNS----S--DKNFLISVAGAAGSGKTALVKTIYESSY  371 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L-~~~----~--~~~~~v~I~G~gGvGKT~LA~~~~~~~~  371 (501)
                      |=.|..+-++++.+.+ ...    .  ...--++|.|-|-+|||+|...+..+.+
T Consensus       149 Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR  203 (444)
T COG1160         149 HGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEER  203 (444)
T ss_pred             hccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCce
Confidence            3446667777777775 211    1  1357899999999999999999987543

>PRK14974 cell division protein FtsY; Provisional

Probab=96.04  E-value=0.047  Score=54.02  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=21.2

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++.++.++|++|+||||++..++.
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~  162 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAY  162 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3468999999999999998877766

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.04  E-value=0.026  Score=54.67  Aligned_cols=88  Identities=13%  Similarity=0.141  Sum_probs=45.7

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC-ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF-DMRSVFADILRQLTQDEVDEESSLDDLESEFTG  423 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~  423 (501)
                      +.++++|+|++|+||||++..++........-..+..  +.+.... .....+......+..+.. ...+..++.+.+..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~l--i~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~  269 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVAL--ITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDR  269 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEE--EECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHH
Confidence            4569999999999999999888762221211123444  4443211 122233333444443322 23344455555554


Q ss_pred             hcCCceEEEEEcCC
Q 010799          424 ILYEKRYLVVLDDV  437 (501)
Q Consensus       424 ~l~~~r~LlVlDnv  437 (501)
                      + .+ .=+|++|..
T Consensus       270 ~-~~-~d~vliDt~  281 (282)
T TIGR03499       270 L-RD-KDLILIDTA  281 (282)
T ss_pred             c-cC-CCEEEEeCC
Confidence            4 22 346777753

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=96.03  E-value=0.0053  Score=55.55  Aligned_cols=117  Identities=15%  Similarity=0.132  Sum_probs=57.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccCCcccee-EEEEeCCCCChHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHh
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-ANVYVSQDFDMRSVFADILRQLTQDEVD--EESSLDDLESEFTGI  424 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~  424 (501)
                      ++.|+|+.|.||||+.+.+.-. ....+..+.+| +.+.+.       .+.++...+......  ..+....-..++...
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~-~~la~~G~~v~a~~~~~~-------~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~   72 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLI-VIMAQIGSFVPAESAELP-------VFDRIFTRIGASDSLAQGLSTFMVEMKETANI   72 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHH-HHHHHhCCCeeehheEec-------ccceEEEEeCCCCchhccccHHHHHHHHHHHH
Confidence            4679999999999999988732 11122222121 000000       000111111111000  111222223344555


Q ss_pred             cCC--ceEEEEEcCCCCh---hhH----HHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          425 LYE--KRYLVVLDDVHSP---GAW----YDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       425 l~~--~r~LlVlDnv~~~---~~~----~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +..  ++-|+++|+.-..   .+-    ..+...+..   ..++.+|++|....+...+.
T Consensus        73 l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~l~~~~~  129 (185)
T smart00534       73 LKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE---KIGALTLFATHYHELTKLAD  129 (185)
T ss_pred             HHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHHHHHHhh
Confidence            544  7889999998641   111    222232222   23678999999888766553

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.03  E-value=0.024  Score=56.24  Aligned_cols=66  Identities=11%  Similarity=-0.035  Sum_probs=45.0

Q ss_pred             HHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc---c-ccceeEEEEcCCCCCHHHHHHHHHHHhcCC
Q 010799          148 FLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK---E-YFQCRAWVPVPEELERRELVTDILKQVGGS  214 (501)
Q Consensus       148 ~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~---~-~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~  214 (501)
                      +|..+=+.-.++=|.|.+|+|||+|+.++.-.....   . .-...+||.....|....+.+ +++.++.+
T Consensus       118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d  187 (344)
T PLN03187        118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD  187 (344)
T ss_pred             hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence            343332355788899999999999998875322221   1 124678999999999888765 56666543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.03  E-value=0.04  Score=49.91  Aligned_cols=50  Identities=16%  Similarity=0.148  Sum_probs=33.5

Q ss_pred             HHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          421 FTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       421 l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +.+.+.-++=+|.+|+--+      ...++++...|..     ...|+|-|.+-.-+..++
T Consensus       160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-----~yTIviVTHnmqQAaRvS  215 (253)
T COG1117         160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-----KYTIVIVTHNMQQAARVS  215 (253)
T ss_pred             HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-----ccEEEEEeCCHHHHHHHh
Confidence            3444445666888998654      2345566655555     778999999888777665

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.03  E-value=0.028  Score=59.18  Aligned_cols=48  Identities=8%  Similarity=-0.030  Sum_probs=33.7

Q ss_pred             ccccccchhhHHHHHHHHh---cC-------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLI---RS-------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~---~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..++++.+++.   ..       ....+-+-++|++|+|||+||+.+.+.
T Consensus        54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~  111 (495)
T TIGR01241        54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE  111 (495)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            4578898877766655443   11       112344778999999999999999854

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.03  E-value=0.026  Score=57.31  Aligned_cols=47  Identities=28%  Similarity=0.291  Sum_probs=35.2

Q ss_pred             ccceeecchhHHHHHHHhhc---------CCC-------CceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSMENDILKLAKLTLN---------SSD-------KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~---------~~~-------~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...++|.++..+.+...+.+         ...       ....+.++|++|+|||++|+.++.
T Consensus        76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~  138 (413)
T TIGR00382        76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR  138 (413)
T ss_pred             cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence            35579999999988665521         011       125799999999999999999987

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.03  E-value=0.042  Score=49.96  Aligned_cols=118  Identities=18%  Similarity=0.153  Sum_probs=58.6

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCcccee-E----------E-EEeCCCCC---hHHHHHHHHHHhccCCCCCC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A----------N-VYVSQDFD---MRSVFADILRQLTQDEVDEE  411 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~----------~-v~~~~~~~---~~~~~~~i~~~l~~~~~~~~  411 (501)
                      .+++|.|+.|+|||||++.++..... ....+.++ +          . ..+.+...   ...+...+.......   ..
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~L  109 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR---GL  109 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh---cC
Confidence            69999999999999999998852100 00111111 0          0 11111111   112223322111000   12


Q ss_pred             CCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799          412 SSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAY  469 (501)
Q Consensus       412 ~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~  469 (501)
                      +.-+...-.+.+.+..++-++++|+--.   ......+...+... ...+..||++|.+..
T Consensus       110 SgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~-~~~~~tiiivtH~~~  169 (192)
T cd03232         110 SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL-ADSGQAILCTIHQPS  169 (192)
T ss_pred             CHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHH-HHcCCEEEEEEcCCh
Confidence            2223334445555666778899999654   22223333333321 123678899988865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.02  E-value=0.036  Score=51.19  Aligned_cols=53  Identities=9%  Similarity=0.185  Sum_probs=33.3

Q ss_pred             HHHHHccCCeEEEEEecCCCh---hHHHHHhhcCCC--CCCCcEEEEEeccccchhcc
Q 010799          225 KLRKLFTENRYLVVIINARTP---DIWDILKYLFPN--SSNGSRVILSFQEADAARCR  277 (501)
Q Consensus       225 ~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~~~~--~~~gs~iivTtr~~~va~~~  277 (501)
                      .+.+.|-...-+|+.|+-...   +.=+.+...+..  ...|..||+.|.+..+|..|
T Consensus       152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~  209 (226)
T COG1136         152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA  209 (226)
T ss_pred             HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence            456667777778889986531   111222222222  24588899999999999843

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=96.01  E-value=0.057  Score=56.42  Aligned_cols=160  Identities=12%  Similarity=0.145  Sum_probs=84.9

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ  402 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~  402 (501)
                      ..++|....+.++.+.+..-......+.|.|.+|+||+++|+.+...  ........+-  +++..-  ..+.+...+  
T Consensus       134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~--~~~~~~~~~~--~~c~~~--~~~~~~~~l--  205 (463)
T TIGR01818       134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRH--SPRANGPFIA--LNMAAI--PKDLIESEL--  205 (463)
T ss_pred             cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHh--CCCCCCCeEE--EeCCCC--CHHHHHHHh--
Confidence            35888888888887777544444467889999999999999988762  1111122223  444332  122222222  


Q ss_pred             hccCCCC-CCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCChHH
Q 010799          403 LTQDEVD-EESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREAYV  470 (501)
Q Consensus       403 l~~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~~~  470 (501)
                       .+.... ......   .....+-....-.|+||+++.  ...+..|...+....         .....+||.||.....
T Consensus       206 -fg~~~~~~~~~~~---~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~  281 (463)
T TIGR01818       206 -FGHEKGAFTGANT---RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLE  281 (463)
T ss_pred             -cCCCCCCCCCccc---CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHH
Confidence             111110 000000   000111112234588999986  455566666655410         0124588888764421


Q ss_pred             ------------HhhcCCCCcceeCCCCC--hHHHHHHHH
Q 010799          471 ------------ARSFSPSIFLHQLRPLN--EEESGKLFQ  496 (501)
Q Consensus       471 ------------~~~~~~~~~~~~l~~L~--~~ea~~Lf~  496 (501)
                                  ...+  ....+.++||.  .+|-..|..
T Consensus       282 ~~~~~~~f~~~L~~rl--~~~~i~lPpLr~R~~Di~~l~~  319 (463)
T TIGR01818       282 ALVRQGKFREDLFHRL--NVIRIHLPPLRERREDIPRLAR  319 (463)
T ss_pred             HHHHcCCcHHHHHHHh--CcceecCCCcccchhhHHHHHH
Confidence                        1111  24588899998  566655544

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.00  E-value=0.0055  Score=51.42  Aligned_cols=21  Identities=43%  Similarity=0.737  Sum_probs=19.1

Q ss_pred             EEEEecCCCChHHHHHHHHcc
Q 010799          349 ISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      |.|.|++|+||||+|+.+...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998873

...

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.00  E-value=0.014  Score=57.74  Aligned_cols=23  Identities=9%  Similarity=-0.283  Sum_probs=20.7

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .-+.++|..|+|||.||..+.+.
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~  206 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKE  206 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHH
Confidence            66899999999999999999863

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.00  E-value=0.021  Score=51.17  Aligned_cols=95  Identities=18%  Similarity=0.202  Sum_probs=48.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEE--eCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVY--VSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGIL  425 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~--~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l  425 (501)
                      .|.|.|++|+||||+|+.+..... -.|.+.-.|  ..  ....   ..+-..+...+....-   -+-+-....+..++
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~--~r~~~~~~---t~lg~~~k~~i~~g~l---v~d~i~~~~v~~rl   72 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDI--LRAAIAER---TELGEEIKKYIDKGEL---VPDEIVNGLVKERL   72 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHH--hHhhhccC---ChHHHHHHHHHHcCCc---cchHHHHHHHHHHH
Confidence            478999999999999999988411 122221111  11  1111   2233333332332221   11122234444444


Q ss_pred             CC---ceEEEEEcCCCC-hhhHHHHHHhcCC
Q 010799          426 YE---KRYLVVLDDVHS-PGAWYDLKRIFSP  452 (501)
Q Consensus       426 ~~---~r~LlVlDnv~~-~~~~~~l~~~l~~  452 (501)
                      ..   .. .+|+|++-. ..++..+...+..
T Consensus        73 ~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~  102 (178)
T COG0563          73 DEADCKA-GFILDGFPRTLCQARALKRLLKE  102 (178)
T ss_pred             HhhcccC-eEEEeCCCCcHHHHHHHHHHHHH
Confidence            33   24 889999865 4555555555444

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=96.00  E-value=0.21  Score=51.03  Aligned_cols=125  Identities=18%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccC------------C-cc-ceeEEEEe----------CCCCChHHHHHHH
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKN------------F-PC-RAWANVYV----------SQDFDMRSVFADI  399 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~------------f-~~-~~w~~v~~----------~~~~~~~~~~~~i  399 (501)
                      +--..++++|..|.||||+-+.+..+.+-...            | .. +-|  ...          +.+--...-++.-
T Consensus       388 e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~--l~~~v~~vd~~~~~~pG~~~ee~r~h  465 (582)
T KOG0062|consen  388 ESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDF--LDKNVNAVDFMEKSFPGKTEEEIRRH  465 (582)
T ss_pred             chhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhH--HHHHhHHHHHHHHhCCCCCHHHHHHH
Confidence            33357899999999999998888775431111            1 11 112  110          0000112222233


Q ss_pred             HHHhccCCCCC------CCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799          400 LRQLTQDEVDE------ESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYV  470 (501)
Q Consensus       400 ~~~l~~~~~~~------~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~  470 (501)
                      +..++.+.+..      .+.-+...=.+....-.++-|||||+--+   .+.+++|...+..   -.|. ||+.|.+..+
T Consensus       466 l~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~---F~GG-Vv~VSHd~~f  541 (582)
T KOG0062|consen  466 LGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKN---FNGG-VVLVSHDEEF  541 (582)
T ss_pred             HHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHh---cCCc-EEEEECcHHH
Confidence            33333333221      11122223334444446788999999765   4667788888887   3444 5555666655


Q ss_pred             Hhhc
Q 010799          471 ARSF  474 (501)
Q Consensus       471 ~~~~  474 (501)
                      ....
T Consensus       542 i~~~  545 (582)
T KOG0062|consen  542 ISSL  545 (582)
T ss_pred             Hhhc
Confidence            4443

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.99  E-value=0.037  Score=49.73  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.|.++|.||+||||+|++++.
T Consensus         2 pLiIlTGyPgsGKTtfakeLak   23 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAK   23 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHH
Confidence            4688999999999999999987

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.99  E-value=0.0044  Score=55.62  Aligned_cols=73  Identities=8%  Similarity=0.063  Sum_probs=40.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY  235 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~  235 (501)
                      -.-+.++|.+|+|||.||..+.+.. +...+.+ .|+      +..+++..+-..-    ..  .. ...+.+.+.+ -=
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~v-~f~------~~~~L~~~l~~~~----~~--~~-~~~~~~~l~~-~d  110 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEA-IRKGYSV-LFI------TASDLLDELKQSR----SD--GS-YEELLKRLKR-VD  110 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHH-HHTT--E-EEE------EHHHHHHHHHCCH----CC--TT-HCHHHHHHHT-SS
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcce-eEe------ecCceeccccccc----cc--cc-hhhhcCcccc-cc
Confidence            3568899999999999999998632 2233433 444      3455555543221    11  11 1222333433 34


Q ss_pred             EEEEecCCC
Q 010799          236 LVVIINART  244 (501)
Q Consensus       236 LlVlDdv~~  244 (501)
                      ||||||+-.
T Consensus       111 lLilDDlG~  119 (178)
T PF01695_consen  111 LLILDDLGY  119 (178)
T ss_dssp             CEEEETCTS
T ss_pred             Eecccccce
Confidence            788999854

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.99  E-value=0.021  Score=53.81  Aligned_cols=117  Identities=17%  Similarity=0.072  Sum_probs=71.2

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCC-----CCCHHHHHHHHHHHhcCCCCc-----Ccc---hH
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPE-----ELERRELVTDILKQVGGSKVE-----KQL---DP  222 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~-----~~~~~~l~~~i~~~~~~~~~~-----~~~---~~  222 (501)
                      -.++++||-+|+|||||++.+.   ...+.-...++..-.+     .....+-..++++.++.....     .+.   ..
T Consensus        39 ge~~glVGESG~GKSTlgr~i~---~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr  115 (268)
T COG4608          39 GETLGLVGESGCGKSTLGRLIL---GLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR  115 (268)
T ss_pred             CCEEEEEecCCCCHHHHHHHHH---cCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence            4689999999999999999997   3333333333332111     223345566777776643211     111   12


Q ss_pred             -HHHHHHHccCCeEEEEEecCCChhH------HHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799          223 -QKKLRKLFTENRYLVVIINARTPDI------WDILKYLFPNSSNGSRVILSFQEADAARC  276 (501)
Q Consensus       223 -~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iivTtr~~~va~~  276 (501)
                       .-.+.+.|.-+--|||.|..-+.-+      .-.+...+.. ..|-..+..|.+..|++.
T Consensus       116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~  175 (268)
T COG4608         116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRY  175 (268)
T ss_pred             hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhh
Confidence             2346677788888999999654322      2222233322 347779999999999873

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.98  E-value=0.062  Score=49.77  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .+++|.|+.|+|||||.+.++..
T Consensus        38 e~~~i~G~nGsGKSTLl~~i~G~   60 (214)
T PRK13543         38 EALLVQGDNGAGKTTLLRVLAGL   60 (214)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            58999999999999999998763

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.98  E-value=0.14  Score=49.33  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=21.3

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.++++++|++|+||||++..++.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~   94 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLAN   94 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3458999999999999998887766

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	501
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	5e-26
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-08
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-22
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-10
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	6e-08
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	5e-06
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  123 bits (310), Expect = 5e-30
 Identities = 62/352 (17%), Positives = 112/352 (31%), Gaps = 80/352 (22%)

Query: 180 ETVKEYFQCRAWVPVPEELERREL----VTDILKQVGGSKVEKQL----DPQKKLRKLFT 231
           ET +  +Q +  + V E+          V D+ K +   +    +    D      +LF 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF- 68

Query: 232 ENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPK 291
                              L       S    ++  F E +  R  N  F       + +
Sbjct: 69  -----------------WTLL------SKQEEMVQKFVE-EVLR-INYKFLMSPIKTEQR 103

Query: 292 -----YIAYAASEDDGGNDDRALPK-QVPDEEISEEVTAVVSMENDILKLAKLTLNSSDK 345
                   Y    D   ND++   K  V   +   +           L+ A L L  +  
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-----------LRQALLELRPAKN 152

Query: 346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRA-WANV-YVSQDFDMRSVFADILRQL 403
              + + G  GSGKT +   +  S   +     +  W N+   +    +  +   +L Q+
Sbjct: 153 ---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 404 TQDEVDEESS-------LDDLESEFTGILYEKRY---LVVLDDVHSPGAWYDLKRIFSPQ 453
             +              +  +++E   +L  K Y   L+VL +V +  AW      F+  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFN-- 263

Query: 454 ASPIGSRVILITREAYVARSFSPS----IFL-HQLRPLNEEESGKLFQRRLK 500
              +  +++L TR   V    S +    I L H    L  +E   L  + L 
Sbjct: 264 ---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 86.8 bits (214), Expect = 5e-18
 Identities = 79/500 (15%), Positives = 161/500 (32%), Gaps = 131/500 (26%)

Query: 38  LEKVRKSWEEKEINDVSPKLLNAVSQVQDITDTFRIENCKRVYLGVISLRSSTVQARF-- 95
            +    +++ K++ D+   +L+   ++  I  +    +        +  +   +  +F  
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 96  ---RKKIKELVSGIREE------------SEKMLLEISGKITSAENVDSAKKTGILDLNK 140
              R   K L+S I+ E             ++  L    ++ +  NV   +    L L +
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--YLKLRQ 142

Query: 141 EVNKLADFLIRSHSSLFTISVVDVAG---SVMTTDLWKSYECETVKEYFQCRA-WVPV-- 194
            + +L     R   +   + +  V G   + +  D+  SY+   V+     +  W+ +  
Sbjct: 143 ALLEL-----RPAKN---VLIDGVLGSGKTWVALDVCLSYK---VQCKMDFKIFWLNLKN 191

Query: 195 ---PEE-LERRELVTDILKQVGGSKVEKQLDP-------QKKLRKLFTENRY---LVVII 240
              PE  LE  + +   +     S+ +   +        Q +LR+L     Y   L+V++
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 241 NARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAYAASED 300
           N +    W+     F   +   +++L+         R        S+    +I    S D
Sbjct: 252 NVQNAKAWN----AF---NLSCKILLT--------TRFKQVTDFLSAATTTHI----SLD 292

Query: 301 DGGNDDRALPKQVPDEEISEEVTA-VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGK 359
                   L    PDE   + +    +      L    LT N       +S+   +    
Sbjct: 293 H---HSMTL---TPDE--VKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIAES---- 336

Query: 360 TALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDE--ESSLDDL 417
                         ++     W N                 + +  D++    ESSL+ L
Sbjct: 337 -------------IRDGLAT-WDN----------------WKHVNCDKLTTIIESSLNVL 366

Query: 418 ESEFTGILYEKRY--LVVL-DDVHSPGA-----WYDLKRIFSPQASPIGSRVILITREAY 469
           E       Y K +  L V     H P       W+D+ +           +  L+ ++  
Sbjct: 367 EPA----EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 470 VARSFSPSIFLHQLRPLNEE 489
            +    PSI+L     L  E
Sbjct: 423 ESTISIPSIYLELKVKLENE 442

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 7e-09
 Identities = 66/474 (13%), Positives = 127/474 (26%), Gaps = 167/474 (35%)

Query: 19  REKFEDEGLVAQLINSSEELEKVRKSWEEK------EINDVSPKLLNAVSQ--------- 63
           +     E ++  L     +++    S  +        I+ +  +L   +           
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 64  ---VQD--ITDTFRIENCKRVYLGVISLRSSTV------QARFRKKIKELVSGI-REESE 111
              VQ+    + F + +CK +   + + R   V             +      +  +E +
Sbjct: 250 LLNVQNAKAWNAFNL-SCKIL---LTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 112 KMLLEISGKITSAENVDSAKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTT 171
            +LL+                    DL +EV       +    S+   S+ D    + T 
Sbjct: 305 SLLLKYLDCRPQ-------------DLPREVLTTNPRRL----SIIAESIRD---GLATW 344

Query: 172 DLWKSYECETVKE-----------------YFQC---RAWVPVPEE-LER------RELV 204
           D WK   C+ +                   + +         +P   L        +  V
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 205 TDILKQ-VGGSKVEK------------QLDPQKKLRKLFTENRYLVVIINARTPDIWDIL 251
             ++ +    S VEK             L+ + KL   +  +R +V        D ++I 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--------DHYNIP 456

Query: 252 KYLFPNSSNGSRVILSFQEADAARCRNMSFFGGESSFKPKYIAYAASEDDGGNDDRALPK 311
           K    +        L     D        +          +I +             L  
Sbjct: 457 KTFDSDD-------LIPPYLD-----QYFYS---------HIGHH------------LKN 483

Query: 312 QVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFL---ISVAGAAGSGKTALVKTI-- 366
               E ++                  + L   D  FL   I     A +   +++ T+  
Sbjct: 484 IEHPERMTL--------------FRMVFL---DFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 367 ---YESSYTKKNFPCRAWANVYVSQDFDM-------RSVFADILRQLTQDEVDE 410
              Y+  Y   N P      V    DF          S + D+LR     E + 
Sbjct: 527 LKFYKP-YICDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  110 bits (277), Expect = 5e-26
 Identities = 31/210 (14%), Positives = 71/210 (33%), Gaps = 21/210 (10%)

Query: 299 EDDGGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSG 358
           +D        +   + +  + +     V+ +  +  + +       +   +++ G AG G
Sbjct: 100 KDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCG 159

Query: 359 KTALVKTIYESSYTKKN-FPCR-AWANVYVSQDFDMRSVF--ADILRQLTQDEVD---EE 411
           K+ L           +  FP    W  V V +      +    ++  +L QDE       
Sbjct: 160 KSVLAAEAVRDHSLLEGCFPGGVHW--VSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLP 217

Query: 412 SSLDDLESEFTGILY--EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAY 469
            ++++ +     ++     R L++LDDV                      +++L TR+  
Sbjct: 218 LNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDS---------QCQILLTTRDKS 268

Query: 470 VARSF-SPSIFLHQLRPLNEEESGKLFQRR 498
           V  S   P   +     L +E+  ++    
Sbjct: 269 VTDSVMGPKYVVPVESSLGKEKGLEILSLF 298

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 40/275 (14%), Positives = 91/275 (33%), Gaps = 45/275 (16%)

Query: 11  VRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEINDVSPKLLNAVSQVQDITDT 70
             + K++      D  +++    +  E EKVR                    +   +   
Sbjct: 14  EALEKDIKTSYIMDH-MISDGFLTISEEEKVRN-------------EPTQQQRAAMLIKM 59

Query: 71  FRIENCKRVYLGVISLRSSTVQARFRKKIKELVSGIREESEKMLLEISGKITSAENVDSA 130
                 K+     +S  ++ +   ++     L  GI   S     +    ITS       
Sbjct: 60  I----LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVR-TVL 114

Query: 131 KKTGILDLN-------KEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK 183
            + G+           K VN +   L +       +++  +AG   +    ++    ++ 
Sbjct: 115 CEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLL 174

Query: 184 E-YFQCR-AWVPVPEELERREL--VTDILKQVGGSKVEKQLDP------QKKLRKLFT-- 231
           E  F     WV V ++ +   L  + ++  ++   +   Q  P      + +LR L    
Sbjct: 175 EGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRK 234

Query: 232 ENRYLVVIINARTPDIWDILKYLFPNSSNGSRVIL 266
             R L+++      D+WD   ++     +  +++L
Sbjct: 235 HPRSLLIL-----DDVWD--SWVLKAFDSQCQILL 262

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 99.7 bits (248), Expect = 2e-22
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 22/208 (10%)

Query: 303 GNDDRALPKQVPDEEISEEVTAVVSMENDILKL-AKLTLNSSDKNFLISVAGAAGSGKTA 361
               R +  +        +       E  + ++  KL       +F + + G AGSGK+ 
Sbjct: 108 PQFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSV 167

Query: 362 LVKTIYESS--YTKKNFPCRAWANVYVSQDF--DMRSVFADILRQLTQDE-------VDE 410
           +       S      N+    W  +  S         +F DIL  L  ++       V+ 
Sbjct: 168 IASQALSKSDQLIGINYDSIVW--LKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEH 225

Query: 411 ESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYV 470
            +S+         ++     L V DDV        ++         +  R ++ TR+  +
Sbjct: 226 VTSVVLKRMICNALIDRPNTLFVFDDVVQ---EETIRWAQ-----ELRLRCLVTTRDVEI 277

Query: 471 ARSFSPSIFLHQLRPLNEEESGKLFQRR 498
           + + S +    ++  L  +E     +  
Sbjct: 278 SNAASQTCEFIEVTSLEIDECYDFLEAY 305

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 34/284 (11%), Positives = 76/284 (26%), Gaps = 59/284 (20%)

Query: 8   VPVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEINDVSPKLLNAVSQVQDI 67
                 L  L  +    E     +   S  LE++                    S++  +
Sbjct: 21  FEPRDALTYLEGKNIFTEDHSELISKMSTRLERIANFLRI---------YRRQASELGPL 71

Query: 68  TDTFRIENCKRVYLGVISLRSSTVQARFRKKIKELVSGIREESEKMLLEISGKITSAENV 127
            D F   N                Q+     +++ +     E + +   +     S + +
Sbjct: 72  IDFFNYNN----------------QSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQML 115

Query: 128 DSAKKTGILDL-------NKEVNKLADFLIRSHSS-LFTISVVDVAG---SVMTTDLWKS 176
           D     G +            V+++   L        F + +   AG   SV+ +     
Sbjct: 116 DRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK 175

Query: 177 YECETVKEYFQCRAWVPVPEELERR--ELVTDILKQVGGS----------KVEKQLDPQK 224
            + + +   +    W+       +   +L TDIL  +              V   +  + 
Sbjct: 176 SD-QLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRM 234

Query: 225 KLRKLFTENRYLVVIINARTPDIW--DILKYLFPNSSNGSRVIL 266
               L      L V       D+   + +++         R ++
Sbjct: 235 ICNALIDRPNTLFVF-----DDVVQEETIRWAQE---LRLRCLV 270

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 29/180 (16%), Positives = 68/180 (37%), Gaps = 17/180 (9%)

Query: 329 ENDILKLAKLTLNSSDKNFLISVAGAAGSGKTAL-VKTIYESSYTKKNFPCRA-WANVYV 386
           +  +  + +     + +   +++ G AG GK+ L  + + + S  +  F     W ++  
Sbjct: 130 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189

Query: 387 SQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHSPG 441
                +     ++  +L Q+E   +    ++E     +         R L++LDDV  P 
Sbjct: 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW 249

Query: 442 AWYDLKRIFSPQASPIGSRVILITREAYVARSFSPSIFLHQLRP-LNEEESGKLFQRRLK 500
               + + F  Q      +++L TR+  V  S      +  +   L  E+  ++    + 
Sbjct: 250 ----VLKAFDNQ-----CQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN 300

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Length = 318

 Score = 53.4 bits (127), Expect = 6e-08
 Identities = 31/171 (18%), Positives = 70/171 (40%), Gaps = 10/171 (5%)

Query: 302 GGNDDRALPKQVPDEEISEEVTAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGK 359
           G N D  L + + +     E   + S   D  ++     +S  S +N L  +  A  S K
Sbjct: 1   GPNADINLEESIRESLQKRE--LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTK 58

Query: 360 TALVKTI---YESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDD 416
             LV  +     +S  +K  P   + ++   +   M +++  I   ++++ +  + SL+ 
Sbjct: 59  FQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEA 118

Query: 417 LESEFTGILYEKRY--LVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILIT 465
           L    T +   K+   L+++ +  +  +   L+      +S   S++ +I 
Sbjct: 119 LNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSK-NSKLSIIC 168

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 27/210 (12%)

Query: 305 DDRALPKQVP--DEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTAL 362
               +PK++P  ++++ +    + +   +                 +   G  G+GKT  
Sbjct: 11  SPSYVPKRLPHREQQLQQLDILLGNWLRNP--------GHHYPRATLL--GRPGTGKTVT 60

Query: 363 VKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFT 422
           ++ ++E    K       +  +      +  ++  +I R L         S D+  +   
Sbjct: 61  LRKLWELYKDKTTA---RFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLV 117

Query: 423 GILYEKR--YLVVLDDVH--SPGAWYDLKRIFSPQASPIGSR--VILITREAYVARSFSP 476
             L E+     +VLDD    +P       R+          R  ++++     V  +  P
Sbjct: 118 EHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP 177

Query: 477 SIFLH------QLRPLNEEESGKLFQRRLK 500
           S          +  P  +++   +   R K
Sbjct: 178 STRGIMGKYVIRFSPYTKDQIFDILLDRAK 207

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 36/212 (16%)

Query: 308 ALPKQVP--DEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKT 365
            +P ++P  +++I +  +           LA L       N  I   G  G+GKTA+VK 
Sbjct: 17  YIPDELPHREDQIRKIASI----------LAPLYREEKPNNIFIY--GLTGTGKTAVVKF 64

Query: 366 IYESSYTKKNFPCRAWANVYV--SQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG 423
           +    + K     +    VY+   Q      V AD+L  L         S+ +L      
Sbjct: 65  VLSKLHKKFLGKFKH---VYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVK 121

Query: 424 ILYEKR--YLVVLDDV------HSPGAWYDLKRIFSPQA-SPIGSRVILITREAYVARSF 474
            + +     ++VLD++      ++    Y L RI S    S I    I IT +       
Sbjct: 122 AVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKIS--FIGITNDVKFVDLL 179

Query: 475 SPSIFLH------QLRPLNEEESGKLFQRRLK 500
            P +            P N EE   +  +R +
Sbjct: 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	501
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.91
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.9
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.82
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.82
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.82
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.79
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.77
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.72
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.39
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.35
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.35
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.31
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.29
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.29
2fna_A	357	Conserved hypothetical protein; structural genomic	99.24
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.15
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.13
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.04
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.03
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.02
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	98.99
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.96
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.92
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.86
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.83
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.79
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.77
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.76
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.72
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.71
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.7
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.7
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.7
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.69
2fna_A	357	Conserved hypothetical protein; structural genomic	98.65
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.64
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.63
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.6
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.57
3pvs_A	447	Replication-associated recombination protein A; ma	98.54
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.54
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.52
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.51
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.5
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.48
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.48
3bos_A	242	Putative DNA replication factor; P-loop containing	98.44
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.44
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.41
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.4
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.4
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.4
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.4
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.35
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.34
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.34
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.33
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.33
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.32
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.32
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.32
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.3
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.3
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.29
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.29
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.27
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.26
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.26
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.22
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.22
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.2
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.2
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.2
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.19
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.19
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.19
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.18
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.1
3co5_A	143	Putative two-component system transcriptional RES	98.09
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.09
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.07
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.05
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.04
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.03
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.01
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.99
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.99
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.98
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.98
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.97
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.95
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.93
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.9
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.88
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.84
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.84
3co5_A	143	Putative two-component system transcriptional RES	97.79
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.77
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.75
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.74
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.73
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.7
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.66
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.64
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.62
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.57
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.56
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.55
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.55
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.52
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.48
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.46
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.46
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.45
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.42
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.42
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.42
2qgz_A	308	Helicase loader, putative primosome component; str	97.41
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.4
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.4
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.4
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.39
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.39
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.39
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.38
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.38
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.38
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.34
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.28
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.23
3pvs_A	447	Replication-associated recombination protein A; ma	97.2
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.19
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.15
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.14
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.12
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.11
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.09
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.06
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.03
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.02
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.99
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.98
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.97
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.97
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.95
3io5_A	333	Recombination and repair protein; storage dimer, i	96.94
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.92
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.91
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.91
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.91
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.89
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.87
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.87
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.87
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.84
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.83
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.81
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.8
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.74
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.73
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.7
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.69
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.62
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.61
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.6
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.6
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.59
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.58
2qgz_A	308	Helicase loader, putative primosome component; str	96.53
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.49
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.46
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.4
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.33
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.3
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.3
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.19
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.16
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.11
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.04
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.95
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.91
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.9
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.87
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.87
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.85
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.85
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.84
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.83
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.81
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.8
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.79
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	95.78
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.78
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.77
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.75
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.75
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.75
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.73
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.71
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.67
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.66
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.65
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.65
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.57
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.56
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.52
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.52
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	95.52
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.51
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.51
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.49
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.48
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.47
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.46
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.45
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.44
3bos_A	242	Putative DNA replication factor; P-loop containing	95.41
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.38
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.36
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.35
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.34
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.34
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.34
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.31
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.31
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.27
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.27
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.26
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.23
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.23
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.22
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.2
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.19
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.17
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.17
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.13
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.12
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.11
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	95.11
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.09
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.07
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.05
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.05
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.04
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.03
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.01
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.0
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.0
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.99
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	94.95
3io5_A	333	Recombination and repair protein; storage dimer, i	94.93
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.93
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.93
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.93
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	94.92
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.9
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.86
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.84
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.83
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.82
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.81
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.81
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.81
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.8
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.8
2xxa_A	433	Signal recognition particle protein; protein trans	94.79
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.79
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.78
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	94.78
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.77
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.76
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.76
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.74
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.72
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.71
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	94.7
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.7
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.68
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.67
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.67
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	94.67
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.66
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.66
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.64
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.64
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.64
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.63
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.61
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.61
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.6
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.6
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.57
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.56
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.55
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.54
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.53
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.52
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.49
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.48
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.48
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.47
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.46
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	94.46
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.45
1via_A	175	Shikimate kinase; structural genomics, transferase	94.42
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.42
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.42
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.41
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.41
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	94.41
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.4
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.4
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.4
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.37
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.37
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.36
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.35
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.35
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.35
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.34
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.31
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.31
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.3
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.28
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.28
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.27
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	94.26
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.26
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.26
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.24
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.23
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.23
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.23
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.22
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.21
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.21
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.21
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.21
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.2
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.2
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.19
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.19
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.18
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.18
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.17
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.15
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.14
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.13
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.11
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.1
3fwy_A	314	Light-independent protochlorophyllide reductase I	94.08
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.08
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.08
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.06
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.02
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.01
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.01
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	93.99
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	93.99
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.99
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.99
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.99
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.97
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	93.96
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.96
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.95
3fwy_A	314	Light-independent protochlorophyllide reductase I	93.92
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.92
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	93.92
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.91
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.9
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.89
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	93.88
2xxa_A	433	Signal recognition particle protein; protein trans	93.86
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.85
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	93.82
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	93.82
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.82
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	93.82
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.82
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.81
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.81
3ice_A	422	Transcription termination factor RHO; transcriptio	93.8
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.77
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	93.77
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.77
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	93.75
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	93.74
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.74
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.73
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	93.73
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	93.73
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.72
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.72
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.71
1via_A	175	Shikimate kinase; structural genomics, transferase	93.7
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.7
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	93.69
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.68
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.67
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.67
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	93.67
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.65
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	93.64
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.64
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	93.64
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.63
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	93.62
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.62
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.6
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.6
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	93.59
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.56
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.53
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.53
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.52
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.51
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.5
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.49
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	93.49
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	93.48
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	93.46
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.44
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	93.43
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	93.43
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	93.43
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.42
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.41
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	93.4
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.39
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.39
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	93.38
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	93.37
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.35
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.33
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.32
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.31
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.31
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	93.3
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	93.3
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.29
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	93.27
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.27
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	93.26
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.26
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	93.25
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.25
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	93.23
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	93.23
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.23
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	93.22
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	93.17
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.17
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.12
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.12
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.12
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	93.1
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	93.1
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	93.09
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.09
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	93.04
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.02
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.02
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.02
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.99
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	92.98
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	92.97
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.97
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	92.96
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	92.94
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	92.91
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	92.91
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	92.89
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	92.89
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	92.88
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	92.87
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	92.85
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	92.8
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	92.79
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	92.76
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.75
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	92.74
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	92.74
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.74
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	92.73
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	92.69
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	92.68
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	92.67
4a74_A	231	DNA repair and recombination protein RADA; hydrola	92.65
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	92.64
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	92.63
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	92.63
2og2_A	359	Putative signal recognition particle receptor; nuc	92.62
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	92.61
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	92.61
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	92.6
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	92.58
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	92.57

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.91  E-value=3.3e-24  Score=226.54  Aligned_cols=149  Identities=10%  Similarity=0.084  Sum_probs=121.1

Q ss_pred             ccchhhHHHHHHHHhcC-CCCeeEEEEEeeCChhhHHHHhhhhc--ccccccccceeEEEEcCCCC--CHHHHHHHHHHH
Q 010799          136 LDLNKEVNKLADFLIRS-HSSLFTISVVDVAGSVMTTDLWKSYE--CETVKEYFQCRAWVPVPEEL--ERRELVTDILKQ  210 (501)
Q Consensus       136 vg~~~~~~~l~~~L~~~-~~~~~vi~I~G~~GvGKTtLa~~v~~--~~~v~~~F~~~~wv~vs~~~--~~~~l~~~i~~~  210 (501)
                      +||+.++++|.++|... +...++|+|+||||+||||||+.+|+  +.+++.+|++++||++++.+  +...++..|+.+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            59999999999999865 44689999999999999999999998  78999999999999999985  899999999999


Q ss_pred             hcCCCC---c------CcchHHHHHHHHccCC-eEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhcc---
Q 010799          211 VGGSKV---E------KQLDPQKKLRKLFTEN-RYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARCR---  277 (501)
Q Consensus       211 ~~~~~~---~------~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~~---  277 (501)
                      ++....   .      +...+...+++.|++| ||||||||||+.+.+ .+..     .+||+||||||+..||..+   
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~  284 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT  284 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred             HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence            986532   1      1122578999999996 999999999998764 1111     2799999999999998743   


Q ss_pred             ----cCCCCCCCcccCc
Q 010799          278 ----NMSFFGGESSFKP  290 (501)
Q Consensus       278 ----~~~~l~~~~~~~~  290 (501)
                          .+++|+.+++|..
T Consensus       285 ~~~~~l~~L~~~ea~~L  301 (549)
T 2a5y_B          285 CEFIEVTSLEIDECYDF  301 (549)
T ss_dssp             EEEEECCCCCHHHHHHH
T ss_pred             CeEEECCCCCHHHHHHH
Confidence                3344554555444

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.90  E-value=7.8e-24  Score=223.73  Aligned_cols=165  Identities=19%  Similarity=0.229  Sum_probs=138.2

Q ss_pred             eecchhHHHHHHHhhcC-CCCceEEEEEecCCCChHHHHHHHHc--ccccccCCccceeEEEEeCCCC--ChHHHHHHHH
Q 010799          326 VSMENDILKLAKLTLNS-SDKNFLISVAGAAGSGKTALVKTIYE--SSYTKKNFPCRAWANVYVSQDF--DMRSVFADIL  400 (501)
Q Consensus       326 vGR~~~~~~l~~~L~~~-~~~~~~v~I~G~gGvGKT~LA~~~~~--~~~~~~~f~~~~w~~v~~~~~~--~~~~~~~~i~  400 (501)
                      |||++++++|.++|... ....++|+|+||||+||||||+++|+  +.++..+|++++|  ++++..+  ++..++..++
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~w--v~vs~~~~~~~~~~~~~il  208 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVW--LKDSGTAPKSTFDLFTDIL  208 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEE--EECCCCSTTHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEE--EEECCCCCCCHHHHHHHHH
Confidence            49999999999999654 34679999999999999999999997  5688999999999  9998875  7899999999


Q ss_pred             HHhccCCC---C---CCCCHHHHHHHHHHhcCCc-eEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          401 RQLTQDEV---D---EESSLDDLESEFTGILYEK-RYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       401 ~~l~~~~~---~---~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      .++.....   .   ...+...+...++++|.++ |+||||||+|+.+++ .+.    .   .+||+||||||++.++..
T Consensus       209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~----~---~~gs~ilvTTR~~~v~~~  280 (549)
T 2a5y_B          209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA----Q---ELRLRCLVTTRDVEISNA  280 (549)
T ss_dssp             HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH----H---HTTCEEEEEESBGGGGGG
T ss_pred             HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc----c---cCCCEEEEEcCCHHHHHH
Confidence            99987532   1   1234566789999999996 999999999997765 222    2   268999999999999887


Q ss_pred             cCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799          474 FSPSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       474 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      ++....+|+|++|+.++|++||.++++
T Consensus       281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~  307 (549)
T 2a5y_B          281 ASQTCEFIEVTSLEIDECYDFLEAYGM  307 (549)
T ss_dssp             CCSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred             cCCCCeEEECCCCCHHHHHHHHHHHhc
Confidence            753346899999999999999999875

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.82  E-value=3.5e-20  Score=200.64  Aligned_cols=163  Identities=21%  Similarity=0.270  Sum_probs=127.8

Q ss_pred             eeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc-ceeEEEEeCCCCChHHHHHHHHHHh
Q 010799          325 VVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC-RAWANVYVSQDFDMRSVFADILRQL  403 (501)
Q Consensus       325 fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~-~~w~~v~~~~~~~~~~~~~~i~~~l  403 (501)
                      .|||+.++++|.++|... +..++|+|+||||+||||||++++++.+++.+|+. ++|  ++++..++...++..++..+
T Consensus       130 ~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~W--VsVs~~~d~~~IL~~Ll~lL  206 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLL  206 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEE--EECCCSSSHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEE--EEeCCCCCHHHHHHHHHHHH
Confidence            499999999999999653 34789999999999999999999987678889986 899  99998888888888777754


Q ss_pred             ccCC---CCC-------CCCHHHHHHHHHHhc---CCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799          404 TQDE---VDE-------ESSLDDLESEFTGIL---YEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYV  470 (501)
Q Consensus       404 ~~~~---~~~-------~~~~~~~~~~l~~~l---~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~  470 (501)
                      ....   ...       ..+.+.+...+++++   .++|+||||||+|+.+.|+.+    +     +||+||||||++.+
T Consensus       207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~-----pGSRILVTTRd~~V  277 (1221)
T 1vt4_I          207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N-----LSCKILLTTRFKQV  277 (1221)
T ss_dssp             HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H-----SSCCEEEECSCSHH
T ss_pred             hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C-----CCeEEEEeccChHH
Confidence            3321   100       012345566777766   679999999999998777764    2     48999999999998


Q ss_pred             HhhcCCCCcceeCC------CCChHHHHHHHHHhhc
Q 010799          471 ARSFSPSIFLHQLR------PLNEEESGKLFQRRLK  500 (501)
Q Consensus       471 ~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~  500 (501)
                      +..+. ....+.|+      +|+.+||++||.++.+
T Consensus       278 a~~l~-g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g  312 (1221)
T 1vt4_I          278 TDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLD  312 (1221)
T ss_dssp             HHHHH-HHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred             HHhcC-CCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence            86543 23356666      9999999999998743

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.82  E-value=7e-20  Score=211.86  Aligned_cols=169  Identities=17%  Similarity=0.231  Sum_probs=134.9

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccc-cccCC-ccceeEEEEeCCCCC--hHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSY-TKKNF-PCRAWANVYVSQDFD--MRSVF  396 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~-~~~~f-~~~~w~~v~~~~~~~--~~~~~  396 (501)
                      ....||||++++++|.++|...++..++|+|+||||+||||||++++++.+ ...+| +.++|  ++++...+  ....+
T Consensus       122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~  199 (1249)
T 3sfz_A          122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHW--VSIGKQDKSGLLMKL  199 (1249)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEE--EECCSCCHHHHHHHH
T ss_pred             CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEE--EEECCcCchHHHHHH
Confidence            346799999999999999976667789999999999999999999998543 24556 56779  99877543  44556


Q ss_pred             HHHHHHhccCCCC---CCCCHHHHHHHHHHhcCCc--eEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799          397 ADILRQLTQDEVD---EESSLDDLESEFTGILYEK--RYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVA  471 (501)
Q Consensus       397 ~~i~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~--r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~  471 (501)
                      ..++..+......   ...+.+.+...++.++.++  |+||||||+|+..++..         .++|++||||||++.++
T Consensus       200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~---------~~~~~~ilvTtR~~~~~  270 (1249)
T 3sfz_A          200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA---------FDNQCQILLTTRDKSVT  270 (1249)
T ss_dssp             HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT---------TCSSCEEEEEESSTTTT
T ss_pred             HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh---------hcCCCEEEEEcCCHHHH
Confidence            6777777654321   2456788999999999887  99999999998765544         35689999999999988


Q ss_pred             hhcCCCCcceeCCC-CChHHHHHHHHHhhc
Q 010799          472 RSFSPSIFLHQLRP-LNEEESGKLFQRRLK  500 (501)
Q Consensus       472 ~~~~~~~~~~~l~~-L~~~ea~~Lf~~~~~  500 (501)
                      ..+......+++++ |+.++|++||.+.++
T Consensus       271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~  300 (1249)
T 3sfz_A          271 DSVMGPKHVVPVESGLGREKGLEILSLFVN  300 (1249)
T ss_dssp             TTCCSCBCCEECCSSCCHHHHHHHHHHHHT
T ss_pred             HhhcCCceEEEecCCCCHHHHHHHHHHhhC
Confidence            65433677899996 999999999998764

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.82  E-value=1.3e-20  Score=203.85  Aligned_cols=149  Identities=13%  Similarity=0.127  Sum_probs=117.8

Q ss_pred             cccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccce-eEEEEcCCCCCHHHHHHHHHHHhcC
Q 010799          135 ILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQC-RAWVPVPEELERRELVTDILKQVGG  213 (501)
Q Consensus       135 ~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~-~~wv~vs~~~~~~~l~~~i~~~~~~  213 (501)
                      .|||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|++ ++||++++.++...++..+++.++.
T Consensus       130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~  208 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ  208 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            4999999999999998643 4789999999999999999999998889999987 8999999999998888888875432


Q ss_pred             C---CCc----------CcchHHHHHHHHc---cCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc-
Q 010799          214 S---KVE----------KQLDPQKKLRKLF---TENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC-  276 (501)
Q Consensus       214 ~---~~~----------~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~-  276 (501)
                      .   ...          ....+...|+..|   .+||+||||||||+.+.|+.+.       +||+||||||+..++.. 
T Consensus       209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l  281 (1221)
T 1vt4_I          209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL  281 (1221)
T ss_dssp             HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred             cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhc
Confidence            1   110          0112356677765   7899999999999988887652       69999999999999852 


Q ss_pred             -----ccCC------CCCCCcccCcc
Q 010799          277 -----RNMS------FFGGESSFKPK  291 (501)
Q Consensus       277 -----~~~~------~l~~~~~~~~~  291 (501)
                           +.++      .|+.+++|+..
T Consensus       282 ~g~~vy~LeL~d~dL~LS~eEA~eLF  307 (1221)
T 1vt4_I          282 SAATTTHISLDHHSMTLTPDEVKSLL  307 (1221)
T ss_dssp             HHHSSCEEEECSSSSCCCHHHHHHHH
T ss_pred             CCCeEEEecCccccCCcCHHHHHHHH
Confidence                 2333      55666666554

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.79  E-value=5.3e-19  Score=188.81  Aligned_cols=165  Identities=18%  Similarity=0.249  Sum_probs=124.0

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccc-ccCCc-cceeEEEEeCCCCChHHHH---
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYT-KKNFP-CRAWANVYVSQDFDMRSVF---  396 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~f~-~~~w~~v~~~~~~~~~~~~---  396 (501)
                      ...||||+.++++|.++|....+..++|+|+|+||+||||||.+++++..+ ..+|. +++|  ++++.. +...++   
T Consensus       123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~w--v~~~~~-~~~~~~~~l  199 (591)
T 1z6t_A          123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHW--VSVGKQ-DKSGLLMKL  199 (591)
T ss_dssp             CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEE--EEEESC-CHHHHHHHH
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEE--EECCCC-chHHHHHHH
Confidence            356999999999999999765566799999999999999999999985444 77884 7999  888654 233333   


Q ss_pred             HHHHHHhccCC---CCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799          397 ADILRQLTQDE---VDEESSLDDLESEFTGILYE--KRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVA  471 (501)
Q Consensus       397 ~~i~~~l~~~~---~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~  471 (501)
                      ..++..+....   .....+.+.+...+.+.+.+  +++||||||+|+...+..         .+++++||||||+..++
T Consensus       200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~---------l~~~~~ilvTsR~~~~~  270 (591)
T 1z6t_A          200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA---------FDSQCQILLTTRDKSVT  270 (591)
T ss_dssp             HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT---------TCSSCEEEEEESCGGGG
T ss_pred             HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH---------hcCCCeEEEECCCcHHH
Confidence            33444454211   11345667788888888876  689999999998654432         34589999999999887


Q ss_pred             hhcCCCCcceeC---CCCChHHHHHHHHHhhc
Q 010799          472 RSFSPSIFLHQL---RPLNEEESGKLFQRRLK  500 (501)
Q Consensus       472 ~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~  500 (501)
                      ..+.  ...+++   ++|+.+||++||.+.++
T Consensus       271 ~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~  300 (591)
T 1z6t_A          271 DSVM--GPKYVVPVESSLGKEKGLEILSLFVN  300 (591)
T ss_dssp             TTCC--SCEEEEECCSSCCHHHHHHHHHHHHT
T ss_pred             HhcC--CCceEeecCCCCCHHHHHHHHHHHhC
Confidence            6653  333444   68999999999998765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.77  E-value=8.8e-19  Score=202.65  Aligned_cols=139  Identities=12%  Similarity=0.176  Sum_probs=111.5

Q ss_pred             ccccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccc-cccc-ceeEEEEcCCCCC--HHHHHH
Q 010799          130 AKKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETV-KEYF-QCRAWVPVPEELE--RRELVT  205 (501)
Q Consensus       130 ~~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v-~~~F-~~~~wv~vs~~~~--~~~l~~  205 (501)
                      .....||||++++++|.++|...+...++|+|+||||+||||||+++|++.++ ..+| +..+||++++..+  ....+.
T Consensus       121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  200 (1249)
T 3sfz_A          121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ  200 (1249)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred             CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence            34567999999999999999876667899999999999999999999987654 5556 6677999998654  344577


Q ss_pred             HHHHHhcCCCCc------CcchHHHHHHHHccCC--eEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          206 DILKQVGGSKVE------KQLDPQKKLRKLFTEN--RYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       206 ~i~~~~~~~~~~------~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      .++..+......      ....+...++..|.++  ||||||||||+...|+.+       .+||+||||||+..|+.
T Consensus       201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~  271 (1249)
T 3sfz_A          201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD  271 (1249)
T ss_dssp             HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred             HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence            777777654321      2234578888888877  999999999998877553       57999999999999984

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=178.60  Aligned_cols=138  Identities=13%  Similarity=0.214  Sum_probs=105.3

Q ss_pred             cccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccc-cccc-ceeEEEEcCCCCCHHHHHHHH-
Q 010799          131 KKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETV-KEYF-QCRAWVPVPEELERRELVTDI-  207 (501)
Q Consensus       131 ~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v-~~~F-~~~~wv~vs~~~~~~~l~~~i-  207 (501)
                      ....+|||+.++++|.++|.....+.++|+|+||||+||||||+.+|++..+ ..+| +.++|+++++. +...++..+ 
T Consensus       122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~  200 (591)
T 1z6t_A          122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ  200 (591)
T ss_dssp             CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred             CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence            3567999999999999999865556899999999999999999999987766 7889 58999999876 444444444 


Q ss_pred             --HHHhcCCC------CcCcchHHHHHHHHccC--CeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799          208 --LKQVGGSK------VEKQLDPQKKLRKLFTE--NRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAARC  276 (501)
Q Consensus       208 --~~~~~~~~------~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~~  276 (501)
                        +..++...      ..........++..+.+  +++||||||+|+...+..    +   .+||+||||||+..++..
T Consensus       201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~  272 (591)
T 1z6t_A          201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDS  272 (591)
T ss_dssp             HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTT
T ss_pred             HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHHh
Confidence              34454211      11122356778887866  789999999998765542    3   468999999999998764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.39  E-value=1.2e-12  Score=132.96  Aligned_cols=173  Identities=18%  Similarity=0.185  Sum_probs=117.3

Q ss_pred             cceeecchhHHHHHHHh-hc--CC--CCceEEEE--EecCCCChHHHHHHHHcccccccC-----Cc-cceeEEEEeCCC
Q 010799          323 TAVVSMENDILKLAKLT-LN--SS--DKNFLISV--AGAAGSGKTALVKTIYESSYTKKN-----FP-CRAWANVYVSQD  389 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L-~~--~~--~~~~~v~I--~G~gGvGKT~LA~~~~~~~~~~~~-----f~-~~~w~~v~~~~~  389 (501)
                      ..|+||+++++.|.+++ ..  .+  ...+.+.|  +|++|+|||+||+.+++  .....     +. ..+|  +++...
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~   97 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAY--VNAFNA   97 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEE--EEGGGC
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEE--EECCCC
Confidence            56999999999999988 42  11  24467778  99999999999999988  33331     22 2466  777677


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCChh--------hHHHHHHhcCCCC-CC--
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHSPG--------AWYDLKRIFSPQA-SP--  456 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~~--------~~~~l~~~l~~~~-~~--  456 (501)
                      .+...++..++.++.........+..++...+.+.+.  +++++|||||++...        .+..+...+.... .+  
T Consensus        98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~  177 (412)
T 1w5s_A           98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV  177 (412)
T ss_dssp             CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred             CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence            7888999999998876533223455667777777775  679999999998742        2333333332200 12  


Q ss_pred             CCCEEEEEeCChHHHhh--------cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          457 IGSRVILITREAYVARS--------FSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       457 ~~~~iIiTtR~~~~~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+..+|+||+...+...        .......+.+++|+.+++.++|..++
T Consensus       178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~  228 (412)
T 1w5s_A          178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA  228 (412)
T ss_dssp             CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence            45568888876543211        11112239999999999999997654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.35  E-value=8.1e-12  Score=125.52  Aligned_cols=173  Identities=15%  Similarity=0.128  Sum_probs=119.6

Q ss_pred             cceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcccccccC------CccceeEEEEeCCCCChHH
Q 010799          323 TAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYESSYTKKN------FPCRAWANVYVSQDFDMRS  394 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~------f~~~~w~~v~~~~~~~~~~  394 (501)
                      .+|+||+.+++.+..++...  ....+.+.|+|++|+|||++|+.+++  .....      -...+|  +++....+...
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~--i~~~~~~~~~~   94 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIY--VNARHRETPYR   94 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEE--EETTTSCSHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEE--EECCcCCCHHH
Confidence            56999999999999988442  34557899999999999999999988  33221      123456  78877788889


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCChh----hHHHHHHhcCCCC-C--CCCCEEEEEe
Q 010799          395 VFADILRQLTQDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHSPG----AWYDLKRIFSPQA-S--PIGSRVILIT  465 (501)
Q Consensus       395 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~~----~~~~l~~~l~~~~-~--~~~~~iIiTt  465 (501)
                      ++..++.++.........+..+....+.+.+.  +++.+|+||+++...    ..+.+...+.... .  ..+..+|.||
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t  174 (387)
T 2v1u_A           95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT  174 (387)
T ss_dssp             HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred             HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence            99999999976544334456677777777774  458899999998743    2334433332200 1  4567788888


Q ss_pred             CChHHHh----hcCC--CCcceeCCCCChHHHHHHHHHhh
Q 010799          466 REAYVAR----SFSP--SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       466 R~~~~~~----~~~~--~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +......    ...+  ....+.+++++.++..++|..++
T Consensus       175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~  214 (387)
T 2v1u_A          175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA  214 (387)
T ss_dssp             SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred             CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence            7652211    1111  12479999999999999998764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.35  E-value=4.5e-12  Score=127.47  Aligned_cols=171  Identities=17%  Similarity=0.116  Sum_probs=119.0

Q ss_pred             cceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccC--------CccceeEEEEeCCCC-C
Q 010799          323 TAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN--------FPCRAWANVYVSQDF-D  391 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~--------f~~~~w~~v~~~~~~-~  391 (501)
                      .+|+||+++++++..++..  .....+.+.|+|++|+|||+||+.+++  .....        ....+|  +++.... +
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~--i~~~~~~~~   95 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAY--VNCREVGGT   95 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEE--EEHHHHCSC
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEE--EECccCCCC
Confidence            6699999999999988754  234457999999999999999999988  33221        223456  7776666 7


Q ss_pred             hHHHHHHHHHHhccCCC-CCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhh---HHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799          392 MRSVFADILRQLTQDEV-DEESSLDDLESEFTGILYEKRYLVVLDDVHSPGA---WYDLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       392 ~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~---~~~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                      ...++..++..+..... ....+.......+.+.+..++.+|||||++....   .+.+...+..  ...+..+|+||+.
T Consensus        96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~--~~~~~~iI~~t~~  173 (384)
T 2qby_B           96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR--SDANISVIMISND  173 (384)
T ss_dssp             HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHT--SSSCEEEEEECSS
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhc--CCcceEEEEEECC
Confidence            88888888888843222 1233456778888888887766999999987432   2330333333  1267888999886


Q ss_pred             hHHH----hhc-CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          468 AYVA----RSF-SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       468 ~~~~----~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....    ... ......+.+++++.++..++|..++
T Consensus       174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~  210 (384)
T 2qby_B          174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA  210 (384)
T ss_dssp             TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred             CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence            5321    111 1112489999999999999999865

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.31  E-value=5.3e-12  Score=126.77  Aligned_cols=172  Identities=24%  Similarity=0.270  Sum_probs=117.6

Q ss_pred             cceeecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHcccccccCC---ccceeEEEEeCCCCChHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PCRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~~~w~~v~~~~~~~~~~~~~  397 (501)
                      .+|+||+++++.|.+++...  ....+.+.|+|++|+|||+||+.+++  .....+   ...+|  +++....+...++.
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~--i~~~~~~~~~~~~~   95 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVY--INTRQIDTPYRVLA   95 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEE--EEHHHHCSHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEE--EECCCCCCHHHHHH
Confidence            56999999999999988642  34567899999999999999999988  444332   23456  77766667777888


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILYE--KRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAY  469 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~  469 (501)
                      .++..+.........+..+....+.+.+..  ++.+||||+++..      ..+..+...+... ...+..+|+||+...
T Consensus        96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~  174 (386)
T 2qby_A           96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDVK  174 (386)
T ss_dssp             HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCGG
T ss_pred             HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCCC
Confidence            888777554332334456666777766643  4899999999763      3344444444220 123567788887664


Q ss_pred             HHhhcCC------CCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSP------SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+..      ....+.+++++.++..++|.+++
T Consensus       175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~  210 (386)
T 2qby_A          175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA  210 (386)
T ss_dssp             GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred             hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence            3322221      12589999999999999998754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.29  E-value=1.1e-11  Score=122.72  Aligned_cols=162  Identities=15%  Similarity=0.165  Sum_probs=107.8

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC------ChHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF------DMRSV  395 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~------~~~~~  395 (501)
                      ...|+||+.+++.|.+++..+    +++.|+|++|+|||+|++++++  +.     ..+|  +++....      +...+
T Consensus        11 ~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~--~~-----~~~~--~~~~~~~~~~~~~~~~~~   77 (350)
T 2qen_A           11 REDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLN--ER-----PGIL--IDCRELYAERGHITREEL   77 (350)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHH--HS-----SEEE--EEHHHHHHTTTCBCHHHH
T ss_pred             hHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHH--Hc-----CcEE--EEeecccccccCCCHHHH
Confidence            467999999999999998642    6999999999999999999988  32     1566  7664322      45556


Q ss_pred             HHHHHHHhcc-----------------CCCCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCChhh--------HHHHHHh
Q 010799          396 FADILRQLTQ-----------------DEVDEESSLDDLESEFTGILYE-KRYLVVLDDVHSPGA--------WYDLKRI  449 (501)
Q Consensus       396 ~~~i~~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~~~~--------~~~l~~~  449 (501)
                      +..+...+..                 .......+..++...+.+.... ++++|||||++....        +..++..
T Consensus        78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~  157 (350)
T 2qen_A           78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY  157 (350)
T ss_dssp             HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence            6666555432                 0000123556666777666643 389999999987432        2222332


Q ss_pred             cCCCCCCCCCEEEEEeCChHHHhhc-----------CCCCcceeCCCCChHHHHHHHHHh
Q 010799          450 FSPQASPIGSRVILITREAYVARSF-----------SPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       450 l~~~~~~~~~~iIiTtR~~~~~~~~-----------~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +..  ..++.++|+|++.......+           +.....+++.+|+.+|+.+++.+.
T Consensus       158 ~~~--~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~  215 (350)
T 2qen_A          158 AYD--SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRG  215 (350)
T ss_dssp             HHH--HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHH
T ss_pred             HHH--hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHH
Confidence            222  13578899999876532211           102347999999999999998764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.29  E-value=3.1e-11  Score=121.42  Aligned_cols=171  Identities=16%  Similarity=0.232  Sum_probs=121.8

Q ss_pred             cceeecchhHHHHHHHhhc----CCCCceEEEEEecCCCChHHHHHHHHcccccccCC-ccceeEEEEeCCCCChHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLN----SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-PCRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~----~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~~~w~~v~~~~~~~~~~~~~  397 (501)
                      .+|+||+.+++.+..++..    ..+..+.+.|+|++|+|||+|++.+++  ...... ...+|  +++....+...++.
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~--i~~~~~~~~~~~~~   92 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVY--INGFIYRNFTAIIG   92 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEE--EETTTCCSHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEE--EeCccCCCHHHHHH
Confidence            5699999999999998854    222234899999999999999999988  443332 23456  77777778888999


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC--hhhHHHHHHhcCCCCCC----CCCEEEEEeCChH
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHS--PGAWYDLKRIFSPQASP----IGSRVILITREAY  469 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~----~~~~iIiTtR~~~  469 (501)
                      .++..+.........+.......+.+.+.  +++.+|+||+++.  ...+..|...+..  ..    .+..+|++|+...
T Consensus        93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~--~~~~~~~~~~iI~~~~~~~  170 (389)
T 1fnn_A           93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE--ADKLGAFRIALVIVGHNDA  170 (389)
T ss_dssp             HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC--HHHHSSCCEEEEEEESSTH
T ss_pred             HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh--CCCCCcCCEEEEEEECCch
Confidence            99988865433233456667777776664  5688999999986  3445566565543  22    4678888887764


Q ss_pred             HHhhcCC------CCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSP------SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+..      ....+.+++++.++..+++...+
T Consensus       171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~  206 (389)
T 1fnn_A          171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA  206 (389)
T ss_dssp             HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred             HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence            4333221      22379999999999999998765

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.24  E-value=5.8e-11  Score=117.79  Aligned_cols=162  Identities=15%  Similarity=0.193  Sum_probs=104.5

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC-----CChHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD-----FDMRSVF  396 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~-----~~~~~~~  396 (501)
                      ...|+||+++++.|.+ +..     +++.|+|++|+|||+|++++++  ....   ..+|  +++...     .+....+
T Consensus        12 ~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~--~~~~~~~~~~~~~~~~~~   78 (357)
T 2fna_A           12 RKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIY--LDLRKFEERNYISYKDFL   78 (357)
T ss_dssp             GGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEE--EEGGGGTTCSCCCHHHHH
T ss_pred             HHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEE--EEchhhccccCCCHHHHH
Confidence            3669999999999999 743     6999999999999999999988  3332   2467  776532     3344444


Q ss_pred             HHHHHHhcc--------------------CCCC--------CCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-----hH
Q 010799          397 ADILRQLTQ--------------------DEVD--------EESSLDDLESEFTGILYEKRYLVVLDDVHSPG-----AW  443 (501)
Q Consensus       397 ~~i~~~l~~--------------------~~~~--------~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-----~~  443 (501)
                      ..+...+..                    +...        .......+...+.+... ++++|||||++...     ++
T Consensus        79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~  157 (357)
T 2fna_A           79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNL  157 (357)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCC
T ss_pred             HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhH
Confidence            444443311                    0000        02345556666655433 48999999997632     23


Q ss_pred             HHHHHhcCCCCCCCCCEEEEEeCChHHHhhc-------CC----CCcceeCCCCChHHHHHHHHHhh
Q 010799          444 YDLKRIFSPQASPIGSRVILITREAYVARSF-------SP----SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       444 ~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~-------~~----~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..++..+..  ...+.++|+|++.......+       .+    ....+.+.+|+.+++.+++.+.+
T Consensus       158 ~~~l~~~~~--~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~  222 (357)
T 2fna_A          158 LPALAYAYD--NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF  222 (357)
T ss_dssp             HHHHHHHHH--HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence            333333322  23468899999976532211       11    13579999999999999998653

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.15  E-value=4.6e-10  Score=103.19  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=97.7

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+|+|+++.++.+.+++....  .+.+.|+|++|+|||++|+.+++  ..........+..++.........+.. .+.
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   90 (226)
T 2chg_A           16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRH-KIK   90 (226)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHH-HHH
T ss_pred             HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHH-HHH
Confidence            4679999999999999996542  23499999999999999999987  433222222331133333222222111 111


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCCC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPSI  478 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~~  478 (501)
                      .+.....               ....++.+|+|||++..  ..++.+...+..  ...++.+|+||+... +...+.+..
T Consensus        91 ~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~--~~~~~~~i~~~~~~~~~~~~l~~r~  153 (226)
T 2chg_A           91 EFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQSRC  153 (226)
T ss_dssp             HHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             HHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHh--cCCCCeEEEEeCChhhcCHHHHHhC
Confidence            1111000               11246789999999863  445566666655  456788888887653 111111134


Q ss_pred             cceeCCCCChHHHHHHHHHhh
Q 010799          479 FLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       479 ~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..+.+++++.++..+++.+.+
T Consensus       154 ~~i~~~~~~~~~~~~~l~~~~  174 (226)
T 2chg_A          154 AVFRFKPVPKEAMKKRLLEIC  174 (226)
T ss_dssp             EEEECCCCCHHHHHHHHHHHH
T ss_pred             ceeecCCCCHHHHHHHHHHHH
Confidence            489999999999999998765

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.13  E-value=4.2e-10  Score=104.90  Aligned_cols=166  Identities=14%  Similarity=0.137  Sum_probs=98.2

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+|+||+..++.|..++..+ ...+.+.|+|++|+|||+||+.+++.  ....+....+   .+.   ... ....+..
T Consensus        22 ~~~~~g~~~~~~~l~~~l~~~-~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~---~~~---~~~-~~~~~~~   91 (250)
T 1njg_A           22 FADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITAT---PCG---VCD-NCREIEQ   91 (250)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHT-CCCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSS---CCS---CSH-HHHHHHT
T ss_pred             HHHHhCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCC---CCc---ccH-HHHHHhc
Confidence            467999999999999998653 23358999999999999999999873  3222211100   000   000 0011110


Q ss_pred             HhccCC---CCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-H
Q 010799          402 QLTQDE---VDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-V  470 (501)
Q Consensus       402 ~l~~~~---~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~  470 (501)
                      ......   .............+.+.+     .+++.+|||||++.  ...++.+...+..  ...+..+|+||+... +
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~  169 (250)
T 1njg_A           92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQKL  169 (250)
T ss_dssp             TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS--CCTTEEEEEEESCGGGS
T ss_pred             cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc--CCCceEEEEEeCChHhC
Confidence            000000   000001111122222222     24578999999976  4566777777766  566788888887643 2


Q ss_pred             HhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          471 ARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       471 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.+....+.+++++.++..+++.+.+
T Consensus       170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~  198 (250)
T 1njg_A          170 PVTILSRCLQFHLKALDVEQIRHQLEHIL  198 (250)
T ss_dssp             CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHhhhccCCCCCHHHHHHHHHHHH
Confidence            22111134689999999999999998765

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.04  E-value=6.3e-10  Score=107.69  Aligned_cols=176  Identities=15%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             cceeecchhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHcccccccC---Cc--cceeEEEEeCCCCChHHH
Q 010799          323 TAVVSMENDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN---FP--CRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~---f~--~~~w~~v~~~~~~~~~~~  395 (501)
                      ..+.||+++++++...|..  .......+.|+|++|+|||++++.+++.......   ..  ..+.  +++....+...+
T Consensus        20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~--INc~~~~t~~~~   97 (318)
T 3te6_A           20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIH--IDALELAGMDAL   97 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEE--EETTCCC--HHH
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEE--EeccccCCHHHH
Confidence            4489999999999988854  2456689999999999999999999984321111   11  2344  777777888999


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHHHHHHh--cCCceEEEEEcCCCChhhHHHHHHhcCCCC-CCCCCEEEEEeCChH---
Q 010799          396 FADILRQLTQDEVDEESSLDDLESEFTGI--LYEKRYLVVLDDVHSPGAWYDLKRIFSPQA-SPIGSRVILITREAY---  469 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~--l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~-~~~~~~iIiTtR~~~---  469 (501)
                      +..|+.++...........+.+...+...  -.+++++++||+++.....+.+...+.+.. ......+|.++-...   
T Consensus        98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~  177 (318)
T 3te6_A           98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR  177 (318)
T ss_dssp             HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred             HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence            99999999765322222333333333332  135689999999988544444444432100 111223333333221   


Q ss_pred             --HHhhcCC--CCcceeCCCCChHHHHHHHHHhhc
Q 010799          470 --VARSFSP--SIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       470 --~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                        +.....+  ....+.++|++.+|-.+++..++.
T Consensus       178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~  212 (318)
T 3te6_A          178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK  212 (318)
T ss_dssp             HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred             hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence              1111111  125799999999999999998763

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.03  E-value=3.6e-10  Score=114.59  Aligned_cols=143  Identities=18%  Similarity=0.083  Sum_probs=93.8

Q ss_pred             ccccccchhhHHHHHHHH-hc--CC--CCeeEEEE--EeeCChhhHHHHhhhhcccccc---cccc-eeEEEEcCCCCCH
Q 010799          132 KTGILDLNKEVNKLADFL-IR--SH--SSLFTISV--VDVAGSVMTTDLWKSYECETVK---EYFQ-CRAWVPVPEELER  200 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~~GvGKTtLa~~v~~~~~v~---~~F~-~~~wv~vs~~~~~  200 (501)
                      +..++||+.+++.|.++| ..  ..  .....+.|  +|++|+||||||+.+++.....   ..|+ ..+|+...+..+.
T Consensus        21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (412)
T 1w5s_A           21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL  100 (412)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred             CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence            367999999999999998 42  11  13345555  9999999999999999643221   1122 2467777677789


Q ss_pred             HHHHHHHHHHhcCCCCc---CcchHHHHHHHHcc--CCeEEEEEecCCCh--------hHHHHHhhcC---CCCC--CCc
Q 010799          201 RELVTDILKQVGGSKVE---KQLDPQKKLRKLFT--ENRYLVVIINARTP--------DIWDILKYLF---PNSS--NGS  262 (501)
Q Consensus       201 ~~l~~~i~~~~~~~~~~---~~~~~~~~l~~~l~--~kr~LlVlDdv~~~--------~~~~~l~~~~---~~~~--~gs  262 (501)
                      ..++..++.+++.....   ...++...+...+.  +++++|||||++..        +.+..+...+   +...  ...
T Consensus       101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v  180 (412)
T 1w5s_A          101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI  180 (412)
T ss_dssp             HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence            99999999999764321   12234566666664  78999999999753        3333333222   2112  344


Q ss_pred             EEEEEeccccch
Q 010799          263 RVILSFQEADAA  274 (501)
Q Consensus       263 ~iivTtr~~~va  274 (501)
                      .||+||+..++.
T Consensus       181 ~lI~~~~~~~~~  192 (412)
T 1w5s_A          181 GFLLVASDVRAL  192 (412)
T ss_dssp             EEEEEEEETHHH
T ss_pred             EEEEEeccccHH
Confidence            588888866643

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.02  E-value=1.6e-09  Score=118.51  Aligned_cols=153  Identities=15%  Similarity=0.183  Sum_probs=83.6

Q ss_pred             cceeecchhHHHHHHHhhcCC-------CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSS-------DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~  395 (501)
                      .+++|.+..++.+...+....       .....+.++|++|+|||++|+.+++  .....-...+.  ++++.-.+... 
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~--i~~s~~~~~~~-  565 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIR--IDMSEYMEKHS-  565 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEE--EEGGGGCSSCC-
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEE--Eechhcccccc-
Confidence            458899999988888774321       1123799999999999999999887  33221122233  44432111000 


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCC---------CCCCCCEEEEE
Q 010799          396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQ---------ASPIGSRVILI  464 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~---------~~~~~~~iIiT  464 (501)
                                      .....+...++.   ....+|+||+++.  ...++.|+..+...         .....+.||+|
T Consensus       566 ----------------~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t  626 (758)
T 3pxi_A          566 ----------------TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT  626 (758)
T ss_dssp             ----------------CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred             ----------------cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence                            000111122221   1234899999976  34445555443320         01235688888


Q ss_pred             eCCh-----H----HHhhc-----CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          465 TREA-----Y----VARSF-----SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       465 tR~~-----~----~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      |...     .    +...+     .....++.+++|+.++-.+++...+
T Consensus       627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l  675 (758)
T 3pxi_A          627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS  675 (758)
T ss_dssp             ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence            8621     0    11111     1123589999999999888877654

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=98.99  E-value=3.2e-09  Score=86.73  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=64.7

Q ss_pred             cchH-HHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh----------cChhhHHHHHHHHHHhHHHHHHH
Q 010799            5 ATIV-PVVRILKELSREKFEDEGLVAQLINSSEELEKVRKSWEEKEI----------NDVSPKLLNAVSQVQDITDTFRI   73 (501)
Q Consensus         5 ~~v~-~v~kl~~~l~~e~~~~~~~~~~l~~~~~~l~~~~~~~e~~~~----------~~~~~~l~~~~~~~edllD~~~~   73 (501)
                      |+|+ +++||.+++.+|+.++.++.++++.++.+|+.|++++.+++.          +.|+.+||+++||+||+||+|.+
T Consensus         1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~   80 (115)
T 3qfl_A            1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV   80 (115)
T ss_dssp             CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677 999999999999999999999999999999999999987754          23999999999999999999998


Q ss_pred             Hhh
Q 010799           74 ENC   76 (501)
Q Consensus        74 ~~~   76 (501)
                      +..
T Consensus        81 ~~~   83 (115)
T 3qfl_A           81 QVD   83 (115)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            753

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.96  E-value=2.5e-09  Score=104.46  Aligned_cols=156  Identities=17%  Similarity=0.236  Sum_probs=96.9

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+|+|++..++.|.+++..+.  .+.+.|+|++|+|||++|+.+++  ..........+-+++.+..... ..+.+++.
T Consensus        20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-~~i~~~~~   94 (323)
T 1sxj_B           20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGI-DVVRNQIK   94 (323)
T ss_dssp             GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSH-HHHHTHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccCh-HHHHHHHH
Confidence            4679999999999999986543  23399999999999999999988  3322211112200333322221 11222222


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPS  477 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~  477 (501)
                      .+....               ..+ .+++.++|+||++.  ...++.|...+..  ...++.+|+||.... +...+.+.
T Consensus        95 ~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--~~~~~~~il~~~~~~~l~~~l~sr  157 (323)
T 1sxj_B           95 HFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMEL--YSNSTRFAFACNQSNKIIEPLQSQ  157 (323)
T ss_dssp             HHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHTT
T ss_pred             HHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhc--cCCCceEEEEeCChhhchhHHHhh
Confidence            221000               011 34588999999986  3445566666655  456788888886642 22222224


Q ss_pred             CcceeCCCCChHHHHHHHHHhh
Q 010799          478 IFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       478 ~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.+++++.++..+++.+.+
T Consensus       158 ~~~i~~~~~~~~~~~~~l~~~~  179 (323)
T 1sxj_B          158 CAILRYSKLSDEDVLKRLLQII  179 (323)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHH
T ss_pred             ceEEeecCCCHHHHHHHHHHHH
Confidence            4589999999999999998754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.92  E-value=2.6e-08  Score=109.07  Aligned_cols=45  Identities=16%  Similarity=0.003  Sum_probs=37.8

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...++|++.++..+++.|....  ..-+.++|.+|+|||++|+.+.+
T Consensus       185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~  229 (758)
T 1r6b_X          185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW  229 (758)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence            3578999999999999998653  33457899999999999999875

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.86  E-value=4e-08  Score=106.06  Aligned_cols=155  Identities=14%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      -.++.|.++..++|.+.+...           ....+-+.++|++|+|||.+|+.+++  .....     +  +.++.  
T Consensus       476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~-----f--~~v~~--  544 (806)
T 3cf2_A          476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----F--ISIKG--  544 (806)
T ss_dssp             STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCE-----E--EECCH--
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCc-----e--EEecc--
Confidence            356788888888887765321           12346789999999999999999998  33332     2  44321  


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~  454 (501)
                            .+++....      ..+...+...+...-...+++|+||+++..                .....|+..+....
T Consensus       545 ------~~l~s~~v------Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~  612 (806)
T 3cf2_A          545 ------PELLTMWF------GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS  612 (806)
T ss_dssp             ------HHHHTTTC------SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred             ------chhhcccc------chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence                  12221111      223444444455544567899999998752                11344554444310


Q ss_pred             CCCCCEEEEEeCC-hHHHhhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITRE-AYVARSF---SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~-~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.-||-||-. ..+...+   +.-...+.++..+.++-.++|..++
T Consensus       613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l  661 (806)
T 3cf2_A          613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL  661 (806)
T ss_dssp             SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred             CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence            1222223324432 2222221   1245678888887777777776543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.83  E-value=6.7e-09  Score=104.16  Aligned_cols=139  Identities=14%  Similarity=0.036  Sum_probs=94.5

Q ss_pred             cccccchhhHHHHHHHHhc--CCCCeeEEEEEeeCChhhHHHHhhhhcccccc----cc--cceeEEEEcCCCC-CHHHH
Q 010799          133 TGILDLNKEVNKLADFLIR--SHSSLFTISVVDVAGSVMTTDLWKSYECETVK----EY--FQCRAWVPVPEEL-ERREL  203 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~--~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~----~~--F~~~~wv~vs~~~-~~~~l  203 (501)
                      ..++||+++++++.++|..  .....+.+.|+|++|+||||||+.+++...-.    ..  ....+|+..+... +...+
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   99 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV   99 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence            6799999999999988864  23345689999999999999999998642111    11  2345677766666 88889


Q ss_pred             HHHHHHHhcCCCCc----CcchHHHHHHHHccCCeEEEEEecCCChhH---HHH-HhhcCCCCCCCcEEEEEecccc
Q 010799          204 VTDILKQVGGSKVE----KQLDPQKKLRKLFTENRYLVVIINARTPDI---WDI-LKYLFPNSSNGSRVILSFQEAD  272 (501)
Q Consensus       204 ~~~i~~~~~~~~~~----~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~-l~~~~~~~~~gs~iivTtr~~~  272 (501)
                      +..++.++......    ...+....+.+.+..++.+|||||++....   .+. +...+... .+..||+||+...
T Consensus       100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~  175 (384)
T 2qby_B          100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN  175 (384)
T ss_dssp             HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence            99999888432111    123456777888877777999999975322   122 22222111 6788999998754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.79  E-value=3.3e-08  Score=109.42  Aligned_cols=46  Identities=11%  Similarity=0.104  Sum_probs=38.1

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ...++|++.++..+++.|....  ..-+.++|.+|+||||||+.+.+.
T Consensus       169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999997643  234678999999999999998853

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.77  E-value=3.7e-09  Score=94.61  Aligned_cols=149  Identities=11%  Similarity=0.089  Sum_probs=84.2

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC-------CccceeEEEEeCCCCChHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN-------FPCRAWANVYVSQDFDMRS  394 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-------f~~~~w~~v~~~~~~~~~~  394 (501)
                      ..+|+||+++++.+.+.+..  ...+.+.|+|++|+|||++|+.+++.  ....       ....++  +++.      .
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~------~   88 (195)
T 1jbk_A           21 LDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLA--LDMG------A   88 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHH--HHHTCSCGGGTTCEEEE--ECHH------H
T ss_pred             ccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCcEEE--eeHH------H
Confidence            46799999999999999865  33467899999999999999998873  2211       111222  3221      1


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHHhc--CCceEEEEEcCCCChh---------h-HHHHHHhcCCCCCCCCCEEE
Q 010799          395 VFADILRQLTQDEVDEESSLDDLESEFTGIL--YEKRYLVVLDDVHSPG---------A-WYDLKRIFSPQASPIGSRVI  462 (501)
Q Consensus       395 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDnv~~~~---------~-~~~l~~~l~~~~~~~~~~iI  462 (501)
                      +    .   .....  ..........+.+.+  .+++.+|+|||++...         . ...+...+..    .+..+|
T Consensus        89 ~----~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~i  155 (195)
T 1jbk_A           89 L----V---AGAKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR----GELHCV  155 (195)
T ss_dssp             H----H---TTTCS--HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT----TSCCEE
T ss_pred             H----h---ccCCc--cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc----CCeEEE
Confidence            0    0   00000  000111111111111  3457899999997642         1 2333333322    345677


Q ss_pred             EEeCChHHHh------hcCCCCcceeCCCCChHHHHHHH
Q 010799          463 LITREAYVAR------SFSPSIFLHQLRPLNEEESGKLF  495 (501)
Q Consensus       463 iTtR~~~~~~------~~~~~~~~~~l~~L~~~ea~~Lf  495 (501)
                      .||.......      .+.+....+.+++++.++..+++
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          156 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             EEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             EeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence            7776554221      11113336899999999987764

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.76  E-value=1.3e-08  Score=99.48  Aligned_cols=153  Identities=17%  Similarity=0.204  Sum_probs=94.8

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+++|++..++.|..++..+  +.+.+.|+|++|+|||++|+.+++  ..........+-+++++..... +.+.+   
T Consensus        24 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-~~~~~---   95 (327)
T 1iqp_A           24 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGI-NVIRE---   95 (327)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHH-HTTHH---
T ss_pred             HHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCch-HHHHH---
Confidence            456999999999999998654  334599999999999999999988  3322221222301332211000 00011   


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHh--c-CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGI--L-YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFS  475 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~--l-~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~  475 (501)
                                     ....+...  + .+++.++|+|+++.  ...++.|...+..  ...++++|+||.... +...+.
T Consensus        96 ---------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~  158 (327)
T 1iqp_A           96 ---------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQ  158 (327)
T ss_dssp             ---------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHH
T ss_pred             ---------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh--cCCCCeEEEEeCCccccCHHHH
Confidence                           11111111  1 14678999999986  3556677776666  456788888887643 111111


Q ss_pred             CCCcceeCCCCChHHHHHHHHHhh
Q 010799          476 PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       476 ~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +....+.+++++.++..+++.+.+
T Consensus       159 sr~~~~~~~~l~~~~~~~~l~~~~  182 (327)
T 1iqp_A          159 SRCAIFRFRPLRDEDIAKRLRYIA  182 (327)
T ss_dssp             HTEEEEECCCCCHHHHHHHHHHHH
T ss_pred             hhCcEEEecCCCHHHHHHHHHHHH
Confidence            133488999999999999888654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.72  E-value=1e-08  Score=101.17  Aligned_cols=130  Identities=15%  Similarity=0.186  Sum_probs=84.6

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC------CCHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE------LERRELVT  205 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~------~~~~~l~~  205 (501)
                      ...++||+.+.+.|.+++...    +++.|+|++|+|||||++.+.+..      . .+|+.....      .+...++.
T Consensus        11 ~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~   79 (350)
T 2qen_A           11 REDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK   79 (350)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred             hHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence            467999999999999998753    689999999999999999998642      1 567665433      25666777


Q ss_pred             HHHHHhcC-----------------CCC---cCcchHHHHHHHHccC-CeEEEEEecCCChh---------HHHHHhhcC
Q 010799          206 DILKQVGG-----------------SKV---EKQLDPQKKLRKLFTE-NRYLVVIINARTPD---------IWDILKYLF  255 (501)
Q Consensus       206 ~i~~~~~~-----------------~~~---~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~---------~~~~l~~~~  255 (501)
                      .+...+..                 ...   ....++...+.+..+. ++++|||||++...         .+..+....
T Consensus        80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~  159 (350)
T 2qen_A           80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY  159 (350)
T ss_dssp             HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence            66665532                 000   0111233445444432 48999999996532         233333322


Q ss_pred             CCCCCCcEEEEEeccccc
Q 010799          256 PNSSNGSRVILSFQEADA  273 (501)
Q Consensus       256 ~~~~~gs~iivTtr~~~v  273 (501)
                      .. ..+.++|+|++...+
T Consensus       160 ~~-~~~~~~il~g~~~~~  176 (350)
T 2qen_A          160 DS-LPNLKIILTGSEVGL  176 (350)
T ss_dssp             HH-CTTEEEEEEESSHHH
T ss_pred             Hh-cCCeEEEEECCcHHH
Confidence            21 247889999887553

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.71  E-value=9.6e-08  Score=95.72  Aligned_cols=141  Identities=11%  Similarity=0.046  Sum_probs=96.5

Q ss_pred             ccccccchhhHHHHHHHHhc----CCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIR----SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDI  207 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~----~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i  207 (501)
                      +..++||+.+++.|.+++..    ..+..+.+.|+|.+|+|||||++.+.+...-... -..+|+..+...+...++..+
T Consensus        16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l   94 (389)
T 1fnn_A           16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEI   94 (389)
T ss_dssp             CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence            36799999999999999875    2223448999999999999999999854321111 234677777777888999999


Q ss_pred             HHHhcCCCCc---CcchHHHHHHHHcc--CCeEEEEEecCCC--hhHHHHHhhcCCCCC----CCcEEEEEeccccc
Q 010799          208 LKQVGGSKVE---KQLDPQKKLRKLFT--ENRYLVVIINART--PDIWDILKYLFPNSS----NGSRVILSFQEADA  273 (501)
Q Consensus       208 ~~~~~~~~~~---~~~~~~~~l~~~l~--~kr~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~iivTtr~~~v  273 (501)
                      +..++.....   ...+....+...+.  ++..+||||++..  ......+...+....    .+..||+||+....
T Consensus        95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~  171 (389)
T 1fnn_A           95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV  171 (389)
T ss_dssp             HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred             HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence            9988654322   12234455555553  5688999999865  344555555543211    46778888887654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.70  E-value=1.7e-08  Score=100.94  Aligned_cols=141  Identities=11%  Similarity=0.080  Sum_probs=92.7

Q ss_pred             ccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhccccccccc---ceeEEEEcCCCCCHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYF---QCRAWVPVPEELERRELVTD  206 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F---~~~~wv~vs~~~~~~~l~~~  206 (501)
                      +..++||+.+++.|.+++...  ......+.|+|++|+||||||+.+++.  ....|   -..+|+..+...+...++..
T Consensus        19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~   96 (386)
T 2qby_A           19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLAD   96 (386)
T ss_dssp             CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence            468999999999999998752  334568899999999999999999853  22222   23467766666677888888


Q ss_pred             HHHHhcCCCCcC---cchHHHHHHHHcc--CCeEEEEEecCCCh------hHHHHHhhcCCC-CCCCcEEEEEeccccch
Q 010799          207 ILKQVGGSKVEK---QLDPQKKLRKLFT--ENRYLVVIINARTP------DIWDILKYLFPN-SSNGSRVILSFQEADAA  274 (501)
Q Consensus       207 i~~~~~~~~~~~---~~~~~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~iivTtr~~~va  274 (501)
                      ++.+++......   ..+....+.+.+.  +++.+||||+++..      +.+..+...+.. ...+..+|+||+.....
T Consensus        97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~  176 (386)
T 2qby_A           97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV  176 (386)
T ss_dssp             HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred             HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence            888876532221   2233455556654  45899999998642      233333332211 23356678888876543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.70  E-value=4.8e-08  Score=97.79  Aligned_cols=141  Identities=11%  Similarity=0.022  Sum_probs=93.0

Q ss_pred             ccccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhccccccc---c-cceeEEEEcCCCCCHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKE---Y-FQCRAWVPVPEELERRELVT  205 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~---~-F~~~~wv~vs~~~~~~~l~~  205 (501)
                      +..++||+.+++.+.++|...  ......+.|+|++|+||||||+.+++...-..   . --..+|+......+...++.
T Consensus        18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   97 (387)
T 2v1u_A           18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS   97 (387)
T ss_dssp             CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence            367999999999999998642  33456788999999999999999986431110   0 12346777778888999999


Q ss_pred             HHHHHhcCCCCcC---cchHHHHHHHHc--cCCeEEEEEecCCChhH----HHHH---hhcCCCC--CCCcEEEEEeccc
Q 010799          206 DILKQVGGSKVEK---QLDPQKKLRKLF--TENRYLVVIINARTPDI----WDIL---KYLFPNS--SNGSRVILSFQEA  271 (501)
Q Consensus       206 ~i~~~~~~~~~~~---~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~----~~~l---~~~~~~~--~~gs~iivTtr~~  271 (501)
                      .++.+++......   ..+....+...+  .+++.+||||++.....    .+.+   .......  ..+..+|.||+..
T Consensus        98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~  177 (387)
T 2v1u_A           98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL  177 (387)
T ss_dssp             HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred             HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence            9999997643221   223455666666  35688999999975321    1222   2222111  3456788888765


Q ss_pred             c
Q 010799          272 D  272 (501)
Q Consensus       272 ~  272 (501)
                      .
T Consensus       178 ~  178 (387)
T 2v1u_A          178 G  178 (387)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.69  E-value=4.7e-08  Score=95.20  Aligned_cols=151  Identities=17%  Similarity=0.173  Sum_probs=95.3

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccc-cCCcc-ceeEEEEeCCCCChHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTK-KNFPC-RAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~-~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ..+++|++..++.|.+++..+  +.+.+.++|++|+|||++|+.+++  ... ..+.. .+.  ++++.....       
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~--~~~~~~~~~-------   82 (319)
T 2chq_A           16 LDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIE--MNASDERGI-------   82 (319)
T ss_dssp             GGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEE--EETTSTTCT-------
T ss_pred             HHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEE--EeCccccCh-------
Confidence            467999999999999988653  223489999999999999999987  332 12211 122  443321110       


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHh--c-CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhh
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGI--L-YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARS  473 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~--l-~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~  473 (501)
                                  ....+....+...  + .+++.++|+|+++.  ....+.|...+..  ...++.+|+||.... +...
T Consensus        83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~  148 (319)
T 2chq_A           83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM--YSKSCRFILSCNYVSRIIEP  148 (319)
T ss_dssp             ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS--SSSSEEEEEEESCGGGSCHH
T ss_pred             ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh--cCCCCeEEEEeCChhhcchH
Confidence                        0111111222111  1 24578999999986  3445667777766  566778888876543 2222


Q ss_pred             cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          474 FSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       474 ~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +.+....+.+.+++.++..+++.+.+
T Consensus       149 l~sr~~~i~~~~~~~~~~~~~l~~~~  174 (319)
T 2chq_A          149 IQSRCAVFRFKPVPKEAMKKRLLEIC  174 (319)
T ss_dssp             HHTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHhhCeEEEecCCCHHHHHHHHHHHH
Confidence            22244589999999999999887654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.65  E-value=3.6e-08  Score=97.50  Aligned_cols=130  Identities=11%  Similarity=0.076  Sum_probs=78.9

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC-----CCHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE-----LERRELVTD  206 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~-----~~~~~l~~~  206 (501)
                      ...++||+++.+.|.+ +..     +++.|+|++|+|||||++.+.+...  .   ..+|+.....     .+...++..
T Consensus        12 ~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~   80 (357)
T 2fna_A           12 RKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLE   80 (357)
T ss_dssp             GGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred             HHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHH
Confidence            4679999999999999 753     5899999999999999999986432  1   2478876542     345555555


Q ss_pred             HHHHhcC-------------C-------C-C-c------Ccch---HHHHHHHHccCCeEEEEEecCCCh-----hHHHH
Q 010799          207 ILKQVGG-------------S-------K-V-E------KQLD---PQKKLRKLFTENRYLVVIINARTP-----DIWDI  250 (501)
Q Consensus       207 i~~~~~~-------------~-------~-~-~------~~~~---~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~  250 (501)
                      +.+.+..             .       . . .      ....   +...+.+.-+ ++++|||||+...     ..|..
T Consensus        81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~  159 (357)
T 2fna_A           81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP  159 (357)
T ss_dssp             HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred             HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence            5444310             0       0 0 0      0111   2233333222 4899999999642     22322


Q ss_pred             HhhcCCCCCCCcEEEEEeccccc
Q 010799          251 LKYLFPNSSNGSRVILSFQEADA  273 (501)
Q Consensus       251 l~~~~~~~~~gs~iivTtr~~~v  273 (501)
                      +...+.+...+.++|+|++....
T Consensus       160 ~l~~~~~~~~~~~~i~~g~~~~~  182 (357)
T 2fna_A          160 ALAYAYDNLKRIKFIMSGSEMGL  182 (357)
T ss_dssp             HHHHHHHHCTTEEEEEEESSHHH
T ss_pred             HHHHHHHcCCCeEEEEEcCchHH
Confidence            22222222246789999987653

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.64  E-value=1.4e-07  Score=94.06  Aligned_cols=166  Identities=14%  Similarity=0.162  Sum_probs=96.1

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+++|++..++.|...+..+ ...+.+.|+|++|+|||++|+.+++.......+.   .  ..+.    ....+..+..
T Consensus        15 ~~~~vg~~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~--~~~~----~~~~~~~~~~   84 (373)
T 1jr3_A           15 FADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---A--TPCG----VCDNCREIEQ   84 (373)
T ss_dssp             TTTSCSCHHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---S--SCCS----SSHHHHHHHT
T ss_pred             hhhccCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---C--CCCc----ccHHHHHHhc
Confidence            356999999999999998653 2345789999999999999999887322111110   0  0000    0001111111


Q ss_pred             Hh-------ccCCCCCCCCHHHHHHHHHHh-cCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-H
Q 010799          402 QL-------TQDEVDEESSLDDLESEFTGI-LYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-V  470 (501)
Q Consensus       402 ~l-------~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~  470 (501)
                      ..       ............++...+... ..+++.++|+|+++.  ...++.+...+..  ...+..+|++|.... +
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l  162 (373)
T 1jr3_A           85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQKL  162 (373)
T ss_dssp             SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS--CCSSEEEEEEESCGGGS
T ss_pred             cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc--CCCceEEEEEeCChHhC
Confidence            00       000000011222222222111 124578999999976  4556777777766  555777777776442 2


Q ss_pred             HhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          471 ARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       471 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.+....+++.+++.++..+++.+.+
T Consensus       163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~  191 (373)
T 1jr3_A          163 PVTILSRCLQFHLKALDVEQIRHQLEHIL  191 (373)
T ss_dssp             CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             cHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence            22222245689999999999999988654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.63  E-value=1.2e-07  Score=91.00  Aligned_cols=157  Identities=12%  Similarity=0.108  Sum_probs=91.0

Q ss_pred             cccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ...+++|.++.++.|.+.+...           ....+.+.|+|++|+|||+||+.+++  .....|   +.  +.+..-
T Consensus        15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~~---~~--v~~~~~   87 (285)
T 3h4m_A           15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNATF---IR--VVGSEL   87 (285)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCEE---EE--EEGGGG
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--EehHHH
Confidence            3577999999999998887431           23456799999999999999999988  333222   11  222111


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ  453 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~  453 (501)
                      ..              ...  ..........+.......+.+|+||+++..                ..+..+...+...
T Consensus        88 ~~--------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  151 (285)
T 3h4m_A           88 VK--------------KFI--GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF  151 (285)
T ss_dssp             CC--------------CST--THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred             HH--------------hcc--chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence            00              000  001112222233333345689999999753                1222333333221


Q ss_pred             CCCCCCEEEEEeCChHHHh-hc-C--CCCcceeCCCCChHHHHHHHHHhhc
Q 010799          454 ASPIGSRVILITREAYVAR-SF-S--PSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~~~~-~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      ....+..||.||....... .. .  .....+.+++++.++..++|...+.
T Consensus       152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~  202 (285)
T 3h4m_A          152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR  202 (285)
T ss_dssp             CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence            1234566777776442111 11 1  1234799999999999999987653

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.60  E-value=1.5e-07  Score=87.24  Aligned_cols=133  Identities=8%  Similarity=-0.025  Sum_probs=75.2

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV  211 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~  211 (501)
                      ..+++|++..++.|..++.... ..+.+.|+|.+|+||||||+.+++.......+..      ......... ..+....
T Consensus        22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~   93 (250)
T 1njg_A           22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNC-REIEQGR   93 (250)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHHH-HHHHTTC
T ss_pred             HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHHH-HHHhccC
Confidence            3579999999999999998643 2347889999999999999999864322111100      000000000 0000000


Q ss_pred             cCC-----CCc-CcchHHHHHHHHc-----cCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799          212 GGS-----KVE-KQLDPQKKLRKLF-----TENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEAD  272 (501)
Q Consensus       212 ~~~-----~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~~  272 (501)
                      ...     ... ...+....+.+.+     .+++.+|||||++.  ...++.+...+.....++.+|+||+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~  167 (250)
T 1njg_A           94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ  167 (250)
T ss_dssp             CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred             CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence            000     000 0001111222222     35679999999954  5567777766655556788999887543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.57  E-value=2.6e-07  Score=89.56  Aligned_cols=155  Identities=13%  Similarity=0.093  Sum_probs=92.0

Q ss_pred             ceeecchhHHHHHHHhhc-------------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          324 AVVSMENDILKLAKLTLN-------------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~~-------------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      +++|.+..++.|.+++..             .......+.|+|++|+|||++|+.+++............+  +.+... 
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~--~~~~~~-  108 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL--VSVTRD-  108 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE--EEECGG-
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE--EEEcHH-
Confidence            699999999999876532             1234457999999999999999988773211122222233  333210 


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCC-----------ChhhHHHHHHhcCCCCCCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVH-----------SPGAWYDLKRIFSPQASPIGS  459 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~-----------~~~~~~~l~~~l~~~~~~~~~  459 (501)
                                 .+.....  ..........+...   +..+|+||+++           +...+..|...+..  ...+.
T Consensus       109 -----------~l~~~~~--g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~--~~~~~  170 (309)
T 3syl_A          109 -----------DLVGQYI--GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN--NRDDL  170 (309)
T ss_dssp             -----------GTCCSST--TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH--CTTTC
T ss_pred             -----------Hhhhhcc--cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc--CCCCE
Confidence                       0111000  11112222222222   23589999998           34455666666666  45677


Q ss_pred             EEEEEeCChHHHhh--cCC-----CCcceeCCCCChHHHHHHHHHhh
Q 010799          460 RVILITREAYVARS--FSP-----SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       460 ~iIiTtR~~~~~~~--~~~-----~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+|.||........  ..+     ....+.+++++.++-.+++...+
T Consensus       171 ~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l  217 (309)
T 3syl_A          171 VVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHML  217 (309)
T ss_dssp             EEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred             EEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence            88888864322111  011     23789999999999999987764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.54  E-value=1.6e-07  Score=95.79  Aligned_cols=147  Identities=12%  Similarity=0.181  Sum_probs=87.1

Q ss_pred             cccceeecchhH---HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHH
Q 010799          321 EVTAVVSMENDI---LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       321 ~~~~fvGR~~~~---~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~  397 (501)
                      ...+++|.+..+   ..|...+..+  ..+.+.|+|++|+|||+||+.+++  .....|.   -  +++.. ..... +.
T Consensus        24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f~---~--l~a~~-~~~~~-ir   92 (447)
T 3pvs_A           24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIAR--YANADVE---R--ISAVT-SGVKE-IR   92 (447)
T ss_dssp             STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHH--HTTCEEE---E--EETTT-CCHHH-HH
T ss_pred             CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHH--HhCCCeE---E--EEecc-CCHHH-HH
Confidence            346799999888   7788877553  347899999999999999999988  4333321   1  22211 11111 11


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEE-EeCChH--HHh
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVIL-ITREAY--VAR  472 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIi-TtR~~~--~~~  472 (501)
                      .+....                 .......++.+|+||+++.  ...++.|+..+..   + ...+|. ||.+..  +..
T Consensus        93 ~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~---~-~v~lI~att~n~~~~l~~  151 (447)
T 3pvs_A           93 EAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED---G-TITFIGATTENPSFELNS  151 (447)
T ss_dssp             HHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT---T-SCEEEEEESSCGGGSSCH
T ss_pred             HHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc---C-ceEEEecCCCCcccccCH
Confidence            111110                 0111135678999999986  3445566666655   1 234444 444442  112


Q ss_pred             hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          473 SFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       473 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+.+...++.+++++.++..+++.+.+
T Consensus       152 aL~sR~~v~~l~~l~~edi~~il~~~l  178 (447)
T 3pvs_A          152 ALLSRARVYLLKSLSTEDIEQVLTQAM  178 (447)
T ss_dssp             HHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHhCceeEEeeCCcCHHHHHHHHHHHH
Confidence            222245588999999999999988765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.54  E-value=5.7e-07  Score=82.18  Aligned_cols=124  Identities=12%  Similarity=0.059  Sum_probs=75.8

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-CRAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      ..+++|++..++.+.+++....  ...+.|+|.+|+|||+||+.+++... ...+. ..+.+..+.......+...+...
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (226)
T 2chg_A           16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEF   92 (226)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHH
Confidence            4578999999999999998653  23388999999999999999985321 11222 22334444443433332222111


Q ss_pred             hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      ....             ....+++.+|||||+..  ...++.+...+.....++++|+||+..
T Consensus        93 ~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~  142 (226)
T 2chg_A           93 ARTA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV  142 (226)
T ss_dssp             HTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             hccc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence            1110             00125788999999865  344555555554445677888888654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.52  E-value=3.7e-07  Score=93.06  Aligned_cols=158  Identities=18%  Similarity=0.278  Sum_probs=92.6

Q ss_pred             ccccee-ecchhH--HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHH
Q 010799          321 EVTAVV-SMENDI--LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       321 ~~~~fv-GR~~~~--~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~  397 (501)
                      .+++|+ |....+  ..+......... ...+.|+|++|+|||+||+.+++  .....+....+-++++.      .+..
T Consensus       103 tfd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~  173 (440)
T 2z4s_A          103 TFENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLN  173 (440)
T ss_dssp             SGGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHH
T ss_pred             ChhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHH
Confidence            346677 655443  333333333222 67899999999999999999988  44444433222004432      2333


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----hhHHHHHHhcCCCCCCCCCEEEEEeCCh-----
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----GAWYDLKRIFSPQASPIGSRVILITREA-----  468 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----~~~~~l~~~l~~~~~~~~~~iIiTtR~~-----  468 (501)
                      ++...+....          ...+.+.+..+..+|+||+++..    ...+.+...+... ...|..||+||.+.     
T Consensus       174 ~~~~~~~~~~----------~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l-~~~~~~iIitt~~~~~~l~  242 (440)
T 2z4s_A          174 DLVDSMKEGK----------LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNEL-HDSGKQIVICSDREPQKLS  242 (440)
T ss_dssp             HHHHHHHTTC----------HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHH-HTTTCEEEEEESSCGGGCS
T ss_pred             HHHHHHHccc----------HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEECCCHHHHH
Confidence            4444333221          12333444435679999999753    2344555543221 13467888888763     


Q ss_pred             ----HHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          469 ----YVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       469 ----~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                          .+...+. .+.++.+++++.++..+++.+.+
T Consensus       243 ~l~~~L~sR~~-~g~~i~l~~p~~e~r~~iL~~~~  276 (440)
T 2z4s_A          243 EFQDRLVSRFQ-MGLVAKLEPPDEETRKSIARKML  276 (440)
T ss_dssp             SCCHHHHHHHH-SSBCCBCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcc-CCeEEEeCCCCHHHHHHHHHHHH
Confidence                2233232 34688999999999999998765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.51  E-value=8.9e-07  Score=88.09  Aligned_cols=48  Identities=17%  Similarity=0.189  Sum_probs=37.6

Q ss_pred             ccceeecchhHHHH---HHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          322 VTAVVSMENDILKL---AKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       322 ~~~fvGR~~~~~~l---~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .++|+|++..+..+   .+.+..+....+.+.|+|++|+|||++|+.+++.
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            56799999997764   4444444333478999999999999999999883

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.50  E-value=7e-07  Score=84.27  Aligned_cols=155  Identities=14%  Similarity=0.094  Sum_probs=86.3

Q ss_pred             ccceeecchhHHHHHHHhhc---C-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLN---S-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD  391 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~  391 (501)
                      ..+++|.+...+.|.+++..   .       ....+.+.|+|++|+|||++|+.+++  .....|   +.  +++..-.+
T Consensus         5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~--~~~~~~~~   77 (262)
T 2qz4_A            5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVPF---LA--MAGAEFVE   77 (262)
T ss_dssp             TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCCE---EE--EETTTTSS
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EE--echHHHHh
Confidence            46789999888888766521   1       13346789999999999999999988  333222   22  33332111


Q ss_pred             hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-----------------hhHHHHHHhcCCCC
Q 010799          392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-----------------GAWYDLKRIFSPQA  454 (501)
Q Consensus       392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-----------------~~~~~l~~~l~~~~  454 (501)
                      ..                .......+...+.......+.+|+||+++..                 ..+..++..+....
T Consensus        78 ~~----------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~  141 (262)
T 2qz4_A           78 VI----------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG  141 (262)
T ss_dssp             SS----------------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred             hc----------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence            00                0001112223333333345789999999863                 11233443333211


Q ss_pred             CCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+..+|.||.... +.....   .....+.+++++.++-.++|...+
T Consensus       142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~  190 (262)
T 2qz4_A          142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL  190 (262)
T ss_dssp             TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence            233455666665443 111111   133578899999999999987654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.48  E-value=3.2e-07  Score=90.81  Aligned_cols=166  Identities=18%  Similarity=0.201  Sum_probs=90.2

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCcccee-E------------------
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A------------------  382 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~------------------  382 (501)
                      ..+++|.+..++.|.+++........ +.|+|++|+||||+|+.++..  ....-.+.+. +                  
T Consensus        13 ~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   89 (354)
T 1sxj_E           13 LNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNRKLELNVVS   89 (354)
T ss_dssp             GGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHH--HSCTTCCC------------------CCEE
T ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeecccccccceeeeec
Confidence            46799999999999988822222334 999999999999999988772  1111111000 0                  


Q ss_pred             ---EEEe--CCCC-ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC
Q 010799          383 ---NVYV--SQDF-DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA  454 (501)
Q Consensus       383 ---~v~~--~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~  454 (501)
                         .+..  +... .......+++..+.....     ..... .+.. +..++-++|||+++.  ....+.+...+..  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~--  160 (354)
T 1sxj_E           90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK--  160 (354)
T ss_dssp             CSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH--
T ss_pred             ccceEEecHhhcCCcchHHHHHHHHHHHHhcc-----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh--
Confidence               0111  0000 000011222222211110     00000 0000 233567999999987  3345566666655  


Q ss_pred             CCCCCEEEEEeCChH-HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAY-VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...++++|++|.+.. +...+.+....+++++++.++..+.+.+.+
T Consensus       161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~  206 (354)
T 1sxj_E          161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV  206 (354)
T ss_dssp             STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence            445778888876532 222222244689999999999999888654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.48  E-value=7.5e-07  Score=87.03  Aligned_cols=145  Identities=12%  Similarity=0.184  Sum_probs=89.1

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      .++++|.+..++.|.+++..+ .....+.++|++|+|||++|+.+++  ....   ..+.  ++++.. . .+.+.+.+.
T Consensus        25 ~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~--~l~~---~~~~--i~~~~~-~-~~~i~~~~~   94 (324)
T 3u61_B           25 IDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCH--DVNA---DMMF--VNGSDC-K-IDFVRGPLT   94 (324)
T ss_dssp             TTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHH--HTTE---EEEE--EETTTC-C-HHHHHTHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHH--HhCC---CEEE--Eccccc-C-HHHHHHHHH
Confidence            467999999999999999643 3446788889999999999999988  3321   1223  443321 1 222222221


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh---hHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG---AWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPS  477 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~---~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~  477 (501)
                      .......                ..+++.+|+||+++...   ..+.|...+..  ...++++|+||.... +...+.+.
T Consensus        95 ~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~--~~~~~~iI~~~n~~~~l~~~l~sR  156 (324)
T 3u61_B           95 NFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEA--YSSNCSIIITANNIDGIIKPLQSR  156 (324)
T ss_dssp             HHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHH--HGGGCEEEEEESSGGGSCTTHHHH
T ss_pred             HHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHh--CCCCcEEEEEeCCccccCHHHHhh
Confidence            1111100                12367899999999753   45566665555  345678888876543 11111112


Q ss_pred             CcceeCCCCChHHHHHH
Q 010799          478 IFLHQLRPLNEEESGKL  494 (501)
Q Consensus       478 ~~~~~l~~L~~~ea~~L  494 (501)
                      ..++.+++++.++-.++
T Consensus       157 ~~~i~~~~~~~~e~~~i  173 (324)
T 3u61_B          157 CRVITFGQPTDEDKIEM  173 (324)
T ss_dssp             SEEEECCCCCHHHHHHH
T ss_pred             CcEEEeCCCCHHHHHHH
Confidence            35799999998885443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.44  E-value=2.1e-07  Score=86.44  Aligned_cols=145  Identities=17%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             ccceeecc---hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          322 VTAVVSME---NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       322 ~~~fvGR~---~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .++|+|.+   ..++.+..++...  ..+.+.|+|++|+|||+||+.+++  ........+.|  +++......      
T Consensus        27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~--~~~~~~~~~------   94 (242)
T 3bos_A           27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFY--IPLGIHASI------   94 (242)
T ss_dssp             TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--EEGGGGGGS------
T ss_pred             hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEE--EEHHHHHHH------
Confidence            35677643   5566666665432  457899999999999999999988  44333334455  554321110      


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh--h--HHHHHHhcCCCCCCCCCEEEEEeCChH-----
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG--A--WYDLKRIFSPQASPIGSRVILITREAY-----  469 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~--~--~~~l~~~l~~~~~~~~~~iIiTtR~~~-----  469 (501)
                          +    .       +..    +.+ .++.+|||||++...  .  .+.+...+.........++|+||+...     
T Consensus        95 ----~----~-------~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~  154 (242)
T 3bos_A           95 ----S----T-------ALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF  154 (242)
T ss_dssp             ----C----G-------GGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred             ----H----H-------HHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence                0    0       000    011 345689999997631  1  334444332200011225777776432     


Q ss_pred             ----HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 ----VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                          +...+. ....+.+++++.++..+++.+.+
T Consensus       155 ~~~~l~~r~~-~~~~i~l~~~~~~~~~~~l~~~~  187 (242)
T 3bos_A          155 VLPDLVSRMH-WGLTYQLQPMMDDEKLAALQRRA  187 (242)
T ss_dssp             CCHHHHHHHH-HSEEEECCCCCGGGHHHHHHHHH
T ss_pred             hhhhhhhHhh-cCceEEeCCCCHHHHHHHHHHHH
Confidence                111111 22689999999999999998764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.44  E-value=6.8e-07  Score=88.31  Aligned_cols=167  Identities=13%  Similarity=0.175  Sum_probs=93.7

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+++|+++.++.|..++..+..  +.+.|+|++|+|||++|+.+++.......+.. .+..++++...... .+.+...
T Consensus        36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~  111 (353)
T 1sxj_D           36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGIS-IVREKVK  111 (353)
T ss_dssp             TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHH-HHTTHHH
T ss_pred             HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchH-HHHHHHH
Confidence            46799999999999999865432  33899999999999999999873211111111 12013333322222 2222222


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCCC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPSI  478 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~~  478 (501)
                      .+...........     .....-...+-+|++|+++.  ....+.+...+..  .....++|++|.... +...+.+..
T Consensus       112 ~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~l~sR~  184 (353)
T 1sxj_D          112 NFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMET--YSGVTRFCLICNYVTRIIDPLASQC  184 (353)
T ss_dssp             HHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred             HHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh--cCCCceEEEEeCchhhCcchhhccC
Confidence            2111100000000     00111123557999999876  3445666666655  445677777765432 211111123


Q ss_pred             cceeCCCCChHHHHHHHHHhh
Q 010799          479 FLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       479 ~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..+.+.+++.++..+.+.+.+
T Consensus       185 ~~i~~~~~~~~~~~~~l~~~~  205 (353)
T 1sxj_D          185 SKFRFKALDASNAIDRLRFIS  205 (353)
T ss_dssp             EEEECCCCCHHHHHHHHHHHH
T ss_pred             ceEEeCCCCHHHHHHHHHHHH
Confidence            478999999999998888754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=2.9e-06  Score=84.12  Aligned_cols=156  Identities=12%  Similarity=0.116  Sum_probs=92.9

Q ss_pred             cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ..+++.|-++.+++|.+.+.-           +-..++-+.++||+|+|||.||+.+++  .....|   +.  ++.+.-
T Consensus       146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~--v~~s~l  218 (405)
T 4b4t_J          146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IR--VSGAEL  218 (405)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EE--EEGGGG
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eE--EEhHHh
Confidence            457899999999999776632           234457899999999999999999998  444433   11  332211


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ  453 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~  453 (501)
                      .+              ...  ..+...+...+...-...+++|+||+++..                ..+..++..+...
T Consensus       219 ~s--------------k~v--Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  282 (405)
T 4b4t_J          219 VQ--------------KYI--GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF  282 (405)
T ss_dssp             SC--------------SST--THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             hc--------------ccc--chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence            11              100  111222223333333456899999999862                1133444444331


Q ss_pred             CCCCCCEEEEEeCChH-HHhhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          454 ASPIGSRVILITREAY-VARSF---SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~-~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+..||.||-... +...+   +.-...+.++..+.++-.++|..++
T Consensus       283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~  332 (405)
T 4b4t_J          283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS  332 (405)
T ss_dssp             TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred             CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence            1233445555665432 22221   2246789999999999999987664

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.40  E-value=2.4e-06  Score=83.41  Aligned_cols=157  Identities=15%  Similarity=0.116  Sum_probs=89.8

Q ss_pred             cccceeecchhHHHHHHHhh----------cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTL----------NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~----------~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.+..++.|.+.+.          ......+.+.|+|++|+|||+||+.+++  .....|   +.  ++++   
T Consensus        16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~--v~~~---   85 (322)
T 3eie_A           16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FS--VSSS---   85 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EE--EEHH---
T ss_pred             CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EE--EchH---
Confidence            35779999999999988772          1222346899999999999999999988  433222   11  3221   


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-------------hHHHHHHhcCCCC-CC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG-------------AWYDLKRIFSPQA-SP  456 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-------------~~~~l~~~l~~~~-~~  456 (501)
                         +    +......      .....+...+...-..++.+|+||+++...             ....++..+.... ..
T Consensus        86 ---~----l~~~~~g------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~  152 (322)
T 3eie_A           86 ---D----LVSKWMG------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS  152 (322)
T ss_dssp             ---H----HHTTTGG------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred             ---H----Hhhcccc------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence               1    1111110      011112222222233467899999998531             1334444333210 23


Q ss_pred             CCCEEEEEeCChH-HHhhcC-CCCcceeCCCCChHHHHHHHHHhhc
Q 010799          457 IGSRVILITREAY-VARSFS-PSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       457 ~~~~iIiTtR~~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      .+..||.||.... +...+. .....+.++..+.++-.++|..++.
T Consensus       153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~  198 (322)
T 3eie_A          153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG  198 (322)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred             CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc
Confidence            4555665665432 111111 1346788999999999999987653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.40  E-value=4.9e-06  Score=80.38  Aligned_cols=156  Identities=12%  Similarity=0.103  Sum_probs=92.8

Q ss_pred             cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ...+++|.+..++.|.+++..           +-...+.+.|+|++|+|||+||+.+++  ....     .+  +.+.  
T Consensus        13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~-----~~--i~v~--   81 (301)
T 3cf0_A           13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQA-----NF--ISIK--   81 (301)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTC-----EE--EEEC--
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCC-----CE--EEEE--
Confidence            346799999999999887642           123456899999999999999999998  3322     22  3332  


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----------------hHHHHHHhcCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----------------AWYDLKRIFSPQ  453 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----------------~~~~l~~~l~~~  453 (501)
                        ..++.    ..+....      ...+...+.......+.+|+||+++...                ....++..+...
T Consensus        82 --~~~l~----~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~  149 (301)
T 3cf0_A           82 --GPELL----TMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM  149 (301)
T ss_dssp             --HHHHH----HHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred             --hHHHH----hhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence              11222    2222111      1222333333334567999999998521                134455444321


Q ss_pred             CCCCCCEEEEEeCChH-HHhhc-C--CCCcceeCCCCChHHHHHHHHHhh
Q 010799          454 ASPIGSRVILITREAY-VARSF-S--PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~-~~~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+..||.||.... +.... .  .....+.++.++.++-.++|...+
T Consensus       150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l  199 (301)
T 3cf0_A          150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL  199 (301)
T ss_dssp             CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence            1234556666776543 22221 1  133578999999999888887664

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.40  E-value=9.5e-07  Score=86.82  Aligned_cols=148  Identities=17%  Similarity=0.110  Sum_probs=89.5

Q ss_pred             cccceeecchhHHHHHHHhhcC---CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNS---SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~---~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~  397 (501)
                      ...+|+|++..++.+..++...   ....+.+.|+|++|+|||++|+.+++  .....|   ..  +++.....      
T Consensus        27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~--~~~~~~~~------   93 (338)
T 3pfi_A           27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KT--TAAPMIEK------   93 (338)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EE--EEGGGCCS------
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EE--ecchhccc------
Confidence            3577999999999999888542   34456789999999999999999987  433332   22  33322111      


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC----------------CCCCC
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA----------------SPIGS  459 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~----------------~~~~~  459 (501)
                                      .......+..  ..+..+|+||+++.  ......+...+....                ..++.
T Consensus        94 ----------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~  155 (338)
T 3pfi_A           94 ----------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF  155 (338)
T ss_dssp             ----------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred             ----------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence                            1111122221  13457899999986  344445555443310                01124


Q ss_pred             EEEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799          460 RVILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       460 ~iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+|.+|.... +...+.+ ....+.+++++.++..+++.+.+
T Consensus       156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~  197 (338)
T 3pfi_A          156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAA  197 (338)
T ss_dssp             EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred             EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHH
Confidence            5666555432 1111111 33689999999999999888764

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.40  E-value=6.4e-07  Score=87.40  Aligned_cols=148  Identities=17%  Similarity=0.073  Sum_probs=88.3

Q ss_pred             ccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      ..+|+|++..+..+..++..   .....+.+.|+|++|+|||++|+.+++  .....|   .+  +++.......     
T Consensus        11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~~~---~~--~~~~~~~~~~-----   78 (324)
T 1hqc_A           11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGVNL---RV--TSGPAIEKPG-----   78 (324)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTCCE---EE--ECTTTCCSHH-----
T ss_pred             HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCCCE---EE--EeccccCChH-----
Confidence            46799999999999888742   123346789999999999999999988  332222   33  4433222211     


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh--hhHHHHHHhcCCCC----------------CCCCCE
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP--GAWYDLKRIFSPQA----------------SPIGSR  460 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~----------------~~~~~~  460 (501)
                                       ++...+...+ .++.+|+||+++..  .....+...+....                ..++..
T Consensus        79 -----------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (324)
T 1hqc_A           79 -----------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT  140 (324)
T ss_dssp             -----------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred             -----------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence                             1222221111 24568999999873  33444444333200                002456


Q ss_pred             EEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799          461 VILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       461 iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +|.||.... +...+.. ...++.+++++.++..+++.+.+
T Consensus       141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~  181 (324)
T 1hqc_A          141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDA  181 (324)
T ss_dssp             EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHH
T ss_pred             EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHH
Confidence            666665432 2211111 23589999999999999888765

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.35  E-value=1.6e-06  Score=73.99  Aligned_cols=113  Identities=13%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             ceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHh
Q 010799          324 AVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL  403 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l  403 (501)
                      +++|++..+.++.+.+..-......|.|+|++|+|||++|+.+++..  ..  ....|- +++....+.           
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~--~~--~~~~~v-~~~~~~~~~-----------   65 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG--RN--AQGEFV-YRELTPDNA-----------   65 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS--TT--TTSCCE-EEECCTTTS-----------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC--Cc--cCCCEE-EECCCCCcc-----------
Confidence            58999999999998875433334568899999999999999988732  11  111220 333322111           


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          404 TQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       404 ~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                              ...   ...+...   ..-+|+||+++.  ......+...+..  .....++|.||...
T Consensus        66 --------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~--~~~~~~~I~~t~~~  116 (145)
T 3n70_A           66 --------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQ--EHRPFRLIGIGDTS  116 (145)
T ss_dssp             --------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred             --------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence                    011   1111111   224689999986  3445666666654  45567888877643

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.34  E-value=2.9e-06  Score=81.94  Aligned_cols=147  Identities=14%  Similarity=0.099  Sum_probs=91.9

Q ss_pred             ecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccc-ccccCCccceeEEEEeCC-CCChHHHHHHHHHHhc
Q 010799          327 SMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESS-YTKKNFPCRAWANVYVSQ-DFDMRSVFADILRQLT  404 (501)
Q Consensus       327 GR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~-~~~~~f~~~~w~~v~~~~-~~~~~~~~~~i~~~l~  404 (501)
                      |-++.++.|...+..+.  .+...++|++|+|||++|..+++.. ..........+  ++... .... +..+++...+.
T Consensus         1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~--l~~~~~~~~i-d~ir~li~~~~   75 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLE--IDPEGENIGI-DDIRTIKDFLN   75 (305)
T ss_dssp             ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEE--ECCSSSCBCH-HHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEE--EcCCcCCCCH-HHHHHHHHHHh
Confidence            44567778888886543  6899999999999999999987621 11111222233  43322 1111 22233333332


Q ss_pred             cCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCCCcce
Q 010799          405 QDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPSIFLH  481 (501)
Q Consensus       405 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~~~~~  481 (501)
                      ....                 .+++-++|+|+++.  ....+.|+..+..  .++.+.+|++|.+. .+...+. .. ++
T Consensus        76 ~~p~-----------------~~~~kvviIdead~lt~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~-SR-~~  134 (305)
T 2gno_A           76 YSPE-----------------LYTRKYVIVHDCERMTQQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIK-SR-VF  134 (305)
T ss_dssp             SCCS-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHH-TT-SE
T ss_pred             hccc-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHH-ce-eE
Confidence            2111                 24567899999986  4567788888877  56677877777554 3444444 33 99


Q ss_pred             eCCCCChHHHHHHHHHhh
Q 010799          482 QLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       482 ~l~~L~~~ea~~Lf~~~~  499 (501)
                      ++.+++.++..+.+.+.+
T Consensus       135 ~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A          135 RVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             EEECCCCHHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHh
Confidence            999999999999887653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.34  E-value=1.2e-06  Score=85.72  Aligned_cols=154  Identities=17%  Similarity=0.223  Sum_probs=85.0

Q ss_pred             cccee-ecch--hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          322 VTAVV-SMEN--DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       322 ~~~fv-GR~~--~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .++|+ |...  ....+..++.........+.|+|++|+|||+||+.+++  .....-...++  +++.      .....
T Consensus        10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~--i~~~------~~~~~   79 (324)
T 1l8q_A           10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIY--SSAD------DFAQA   79 (324)
T ss_dssp             SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEE--EEHH------HHHHH
T ss_pred             cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEE--EEHH------HHHHH
Confidence            35566 4333  33444555544333456899999999999999999988  33222112233  4432      23333


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----hHHHHHHhcCCCCCCCCCEEEEEeCChH-----
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----AWYDLKRIFSPQASPIGSRVILITREAY-----  469 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----~~~~l~~~l~~~~~~~~~~iIiTtR~~~-----  469 (501)
                      +...+...      ....    +...+. +..+|+||+++...    ....+...+... ...+..+|+||.+..     
T Consensus        80 ~~~~~~~~------~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~-~~~~~~iii~~~~~~~~l~~  147 (324)
T 1l8q_A           80 MVEHLKKG------TINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRHPQKLDG  147 (324)
T ss_dssp             HHHHHHHT------CHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSCGGGCTT
T ss_pred             HHHHHHcC------cHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEecCChHHHHH
Confidence            33333221      1111    222221 25699999997632    234444433210 123567888876431     


Q ss_pred             ----HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 ----VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                          +...+. ...++.+++ +.++..+++.+.+
T Consensus       148 l~~~L~sR~~-~~~~i~l~~-~~~e~~~il~~~~  179 (324)
T 1l8q_A          148 VSDRLVSRFE-GGILVEIEL-DNKTRFKIIKEKL  179 (324)
T ss_dssp             SCHHHHHHHH-TSEEEECCC-CHHHHHHHHHHHH
T ss_pred             hhhHhhhccc-CceEEEeCC-CHHHHHHHHHHHH
Confidence                222222 346799999 9999999888765

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.33  E-value=3.5e-07  Score=81.19  Aligned_cols=45  Identities=20%  Similarity=0.288  Sum_probs=38.9

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+||+.+++.+.+.+..  ...+.+.|+|++|+|||++|+.+++
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           21 LDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred             cchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999855  3346789999999999999999887

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.33  E-value=8.3e-06  Score=81.99  Aligned_cols=156  Identities=16%  Similarity=0.137  Sum_probs=91.6

Q ss_pred             cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ...++.|-++..++|.+.+.-           +-..++-|.++|++|+|||.||+.+++  .....|   +.  ++.+.-
T Consensus       207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~--vs~s~L  279 (467)
T 4b4t_H          207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IR--VIGSEL  279 (467)
T ss_dssp             CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EE--EEGGGG
T ss_pred             CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EE--EEhHHh
Confidence            456799999999999776521           234568999999999999999999998  444433   11  332211


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ  453 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~  453 (501)
                                    .....  ..+...+...+...-...+++|+||+++..                .....++..+...
T Consensus       280 --------------~sk~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  343 (467)
T 4b4t_H          280 --------------VQKYV--GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF  343 (467)
T ss_dssp             --------------CCCSS--SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred             --------------hcccC--CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence                          11110  111222233333333456899999999852                1122334433331


Q ss_pred             CCCCCCEEEEEeCChH-HHhhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          454 ASPIGSRVILITREAY-VARSF---SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~-~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+..||.||-... +...+   +.....+.++..+.++-.++|..++
T Consensus       344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l  393 (467)
T 4b4t_H          344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS  393 (467)
T ss_dssp             CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence            1233444555654332 22221   1246789999999999999987665

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.32  E-value=1.9e-05  Score=76.95  Aligned_cols=157  Identities=13%  Similarity=0.065  Sum_probs=88.6

Q ss_pred             cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.++..+.|.+.+..          .....+.+.|+|++|+|||+||+.+++  ..    ....+-.++++.-.
T Consensus        10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~----~~~~~~~i~~~~l~   83 (322)
T 1xwi_A           10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EA----NNSTFFSISSSDLV   83 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH--HT----TSCEEEEEECCSSC
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH--Hc----CCCcEEEEEhHHHH
Confidence            457899999999998876631          122347899999999999999999998  33    11223013332111


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCC-CC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQA-SP  456 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~-~~  456 (501)
                                    ...  .......+...+...-..++.+|+||+++..             .....++..+.... ..
T Consensus        84 --------------~~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~  147 (322)
T 1xwi_A           84 --------------SKW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN  147 (322)
T ss_dssp             --------------CSS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred             --------------hhh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence                          000  0112222223333333456789999999863             11233333332210 13


Q ss_pred             CCCEEEEEeCChH-HHhhcC-CCCcceeCCCCChHHHHHHHHHhh
Q 010799          457 IGSRVILITREAY-VARSFS-PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       457 ~~~~iIiTtR~~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+..||.||.... +...+. .....+.++..+.++-.++|..++
T Consensus       148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l  192 (322)
T 1xwi_A          148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL  192 (322)
T ss_dssp             TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH
Confidence            3445555664332 111111 134678899999999999887764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.32  E-value=2.7e-06  Score=80.80  Aligned_cols=152  Identities=14%  Similarity=0.106  Sum_probs=81.2

Q ss_pred             ceeecchhHHHHHH-------Hhhc-CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799          324 AVVSMENDILKLAK-------LTLN-SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       324 ~fvGR~~~~~~l~~-------~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~  395 (501)
                      .++|.+..++++..       .+.. .....+.+.|+|++|+|||+||+.+++  .....|   +.  ++++..      
T Consensus        34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~--~~~~~~---~~--i~~~~~------  100 (272)
T 1d2n_A           34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE--ESNFPF---IK--ICSPDK------  100 (272)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH--HHTCSE---EE--EECGGG------
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--EeCHHH------
Confidence            47788777776665       2321 234567899999999999999999988  322222   11  222210      


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------hhHHHHHHhcCCCC-CCCCCEEE
Q 010799          396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------------GAWYDLKRIFSPQA-SPIGSRVI  462 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~~~~~l~~~l~~~~-~~~~~~iI  462 (501)
                             +.....  ......+...+......+..+|+||+++..            ..+..+...+.... ......||
T Consensus       101 -------~~g~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii  171 (272)
T 1d2n_A          101 -------MIGFSE--TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII  171 (272)
T ss_dssp             -------CTTCCH--HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred             -------hcCCch--HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence                   000000  000112223333334466889999998642            12233444333210 12234466


Q ss_pred             EEeCChHHHhh--cCC-CCcceeCCCCCh-HHHHHHHHH
Q 010799          463 LITREAYVARS--FSP-SIFLHQLRPLNE-EESGKLFQR  497 (501)
Q Consensus       463 iTtR~~~~~~~--~~~-~~~~~~l~~L~~-~ea~~Lf~~  497 (501)
                      .||........  ..+ ....+.+++++. ++..+++.+
T Consensus       172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~  210 (272)
T 1d2n_A          172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL  210 (272)
T ss_dssp             EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred             EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh
Confidence            67766643332  221 246789999988 665555543

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.32  E-value=1.4e-06  Score=90.82  Aligned_cols=160  Identities=16%  Similarity=0.132  Sum_probs=90.9

Q ss_pred             ccceeecchhHHHHHHHhhcC---------------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe
Q 010799          322 VTAVVSMENDILKLAKLTLNS---------------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV  386 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~---------------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~  386 (501)
                      ..+++|++..++.|..++...               .+..+.+.|+|++|+|||++|+.+++  ...  + ..+.  +++
T Consensus        38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~--~l~--~-~~i~--in~  110 (516)
T 1sxj_A           38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--ELG--Y-DILE--QNA  110 (516)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HTT--C-EEEE--ECT
T ss_pred             HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH--HcC--C-CEEE--EeC
Confidence            467999999999999998541               01347999999999999999999988  331  1 1222  444


Q ss_pred             CCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH--hcCCceEEEEEcCCCCh-----hhHHHHHHhcCCCCCCCCC
Q 010799          387 SQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG--ILYEKRYLVVLDDVHSP-----GAWYDLKRIFSPQASPIGS  459 (501)
Q Consensus       387 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~--~l~~~r~LlVlDnv~~~-----~~~~~l~~~l~~~~~~~~~  459 (501)
                      +...+.. .+...+.......     +..........  ....++.+|+||+++..     ..+..+...+..    .+.
T Consensus       111 s~~~~~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~----~~~  180 (516)
T 1sxj_A          111 SDVRSKT-LLNAGVKNALDNM-----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK----TST  180 (516)
T ss_dssp             TSCCCHH-HHHHTGGGGTTBC-----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH----CSS
T ss_pred             CCcchHH-HHHHHHHHHhccc-----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh----cCC
Confidence            4333322 2222222111110     00000000000  12346789999999752     223455554443    133


Q ss_pred             EEEEEeCChH---HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          460 RVILITREAY---VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       460 ~iIiTtR~~~---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+|+++....   +.. ..+....+.+++++.++..+++.+.+
T Consensus       181 ~iIli~~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~  222 (516)
T 1sxj_A          181 PLILICNERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIA  222 (516)
T ss_dssp             CEEEEESCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHH
Confidence            4555554322   222 22245579999999999998887654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.30  E-value=4.3e-06  Score=82.24  Aligned_cols=156  Identities=15%  Similarity=0.188  Sum_probs=89.9

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ..+++|.+..++.|...+..+.  .+.+.++|++|+||||+|+.+++  .....-....+..++.+....... .++...
T Consensus        24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~~~~~~~~~~~~~-ir~~i~   98 (340)
T 1sxj_C           24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR--EIYGKNYSNMVLELNASDDRGIDV-VRNQIK   98 (340)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH--HHHTTSHHHHEEEECTTSCCSHHH-HHTHHH
T ss_pred             HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHcCCCccceEEEEcCcccccHHH-HHHHHH
Confidence            4668899999999998886532  23389999999999999999988  332211111121133322212111 111111


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhhcCCCC
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARSFSPSI  478 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~~~~~~  478 (501)
                      .+.....               ...+.+-++|+|+++.  ....+.|...+..  ....+.+|++|.... +...+.+..
T Consensus        99 ~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--~~~~~~~il~~n~~~~i~~~i~sR~  161 (340)
T 1sxj_C           99 DFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIER--YTKNTRFCVLANYAHKLTPALLSQC  161 (340)
T ss_dssp             HHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             HHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhc--CCCCeEEEEEecCccccchhHHhhc
Confidence            1110000               0123467899999875  3445666666655  445667777765432 222222234


Q ss_pred             cceeCCCCChHHHHHHHHHhh
Q 010799          479 FLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       479 ~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..+.+.+++.++..+.+.+.+
T Consensus       162 ~~~~~~~l~~~~~~~~l~~~~  182 (340)
T 1sxj_C          162 TRFRFQPLPQEAIERRIANVL  182 (340)
T ss_dssp             EEEECCCCCHHHHHHHHHHHH
T ss_pred             eeEeccCCCHHHHHHHHHHHH
Confidence            578999999999888777544

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.30  E-value=8.2e-06  Score=80.01  Aligned_cols=157  Identities=17%  Similarity=0.143  Sum_probs=88.9

Q ss_pred             chhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH------
Q 010799          329 ENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ------  402 (501)
Q Consensus       329 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~------  402 (501)
                      ++..+.|...+..+ .-.+.+.++|++|+|||++|+.+++.......-.   +  ..+.    .......+...      
T Consensus         8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~--~~c~----~c~~c~~~~~~~~~d~~   77 (334)
T 1a5t_A            8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---H--KSCG----HCRGCQLMQAGTHPDYY   77 (334)
T ss_dssp             HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---T--BCCS----CSHHHHHHHHTCCTTEE
T ss_pred             HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---C--CCCC----CCHHHHHHhcCCCCCEE
Confidence            45566777766432 3346899999999999999999887321111000   0  0000    00001111110      


Q ss_pred             -hccCCCCCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhh
Q 010799          403 -LTQDEVDEESSLDDLESEFTGIL-----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARS  473 (501)
Q Consensus       403 -l~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~  473 (501)
                       +...........+++.. +.+.+     .+++-++|+|+++.  ....+.|+..+..  ...++.+|++|.+.. +...
T Consensus        78 ~~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~t  154 (334)
T 1a5t_A           78 TLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE--PPAETWFFLATREPERLLAT  154 (334)
T ss_dssp             EECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHH
T ss_pred             EEeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHH
Confidence             00000001112233322 22222     24577899999986  4556788888877  566777777776653 3333


Q ss_pred             cCCCCcceeCCCCChHHHHHHHHHh
Q 010799          474 FSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       474 ~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      +.+....+.+++++.++..+.+.+.
T Consensus       155 i~SRc~~~~~~~~~~~~~~~~L~~~  179 (334)
T 1a5t_A          155 LRSRCRLHYLAPPPEQYAVTWLSRE  179 (334)
T ss_dssp             HHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred             HhhcceeeeCCCCCHHHHHHHHHHh
Confidence            3335568999999999999888765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=2.4e-06  Score=86.01  Aligned_cols=157  Identities=14%  Similarity=0.104  Sum_probs=91.8

Q ss_pred             ccccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799          320 EEVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ  388 (501)
Q Consensus       320 ~~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~  388 (501)
                      ....++.|-++..++|.+.+..           +-..++-|.++||||+|||.||+.+++  .....|   +.  ++.+.
T Consensus       178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~--v~~s~  250 (434)
T 4b4t_M          178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LK--LAAPQ  250 (434)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EE--EEGGG
T ss_pred             CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EE--Eehhh
Confidence            3568899999999999876422           224567899999999999999999998  444333   11  33221


Q ss_pred             CCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCC
Q 010799          389 DFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSP  452 (501)
Q Consensus       389 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~  452 (501)
                      -              .....  ..+...+...+...-...+++|+||+++..                .....++..+..
T Consensus       251 l--------------~~~~v--Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg  314 (434)
T 4b4t_M          251 L--------------VQMYI--GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG  314 (434)
T ss_dssp             G--------------CSSCS--SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred             h--------------hhccc--chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence            1              11110  111111222222222345899999998741                112345555544


Q ss_pred             CCCCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799          453 QASPIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       453 ~~~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .....+..||.||.... +...+-.   ....+.++..+.++-.++|..++
T Consensus       315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~  365 (434)
T 4b4t_M          315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS  365 (434)
T ss_dssp             SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence            21233445555665443 3222211   34588999999999888887654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=5.2e-06  Score=83.58  Aligned_cols=156  Identities=15%  Similarity=0.132  Sum_probs=93.2

Q ss_pred             cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ...++.|-++.+++|.+.+.-           +-..++-|.++||+|+|||.||+.+++  .....|   +.  ++.+.-
T Consensus       179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~--v~~s~l  251 (437)
T 4b4t_L          179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IF--SPASGI  251 (437)
T ss_dssp             CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EE--EEGGGT
T ss_pred             ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--Eehhhh
Confidence            357789999999998776632           234558999999999999999999998  443333   12  333221


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ  453 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~  453 (501)
                      .+              ...  ..+...+...+...-...+++|+||+++..                ..+..|+..+...
T Consensus       252 ~s--------------k~~--Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  315 (437)
T 4b4t_L          252 VD--------------KYI--GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF  315 (437)
T ss_dssp             CC--------------SSS--SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred             cc--------------ccc--hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence            11              110  111222223333333456899999999851                1133444444332


Q ss_pred             CCCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799          454 ASPIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+..||.||-... +...+-+   -...+.++..+.++-.++|..++
T Consensus       316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~  365 (437)
T 4b4t_L          316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT  365 (437)
T ss_dssp             SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence            1344556777765443 2222221   24578999999998888887654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.27  E-value=9e-06  Score=80.42  Aligned_cols=156  Identities=15%  Similarity=0.117  Sum_probs=88.0

Q ss_pred             cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.+..++.|.+.+..          .....+.+.|+|++|+|||+||+.+++  .....|   +.  ++++   
T Consensus        49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~--v~~~---  118 (355)
T 2qp9_X           49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FS--VSSS---  118 (355)
T ss_dssp             CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEE---EE--EEHH---
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--eeHH---
Confidence            457899999999999887631          112335789999999999999999998  332222   11  2221   


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-------------hHHHHHHhcCCCC-CC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG-------------AWYDLKRIFSPQA-SP  456 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-------------~~~~l~~~l~~~~-~~  456 (501)
                         +    +....    .  ......+...+.......+.+|+||+++...             ....++..+.... ..
T Consensus       119 ---~----l~~~~----~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~  185 (355)
T 2qp9_X          119 ---D----LVSKW----M--GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS  185 (355)
T ss_dssp             ---H----HHSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred             ---H----Hhhhh----c--chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence               1    11110    0  1112222222333333567899999998632             1333443332100 23


Q ss_pred             CCCEEEEEeCChH-HHhhc-CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          457 IGSRVILITREAY-VARSF-SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       457 ~~~~iIiTtR~~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+..||.||.... +...+ ......+.+++++.++-.++|..++
T Consensus       186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l  230 (355)
T 2qp9_X          186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV  230 (355)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHH
Confidence            3455665665432 11111 1134678899999999999888765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.26  E-value=1.9e-06  Score=88.58  Aligned_cols=148  Identities=15%  Similarity=0.099  Sum_probs=80.9

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-----ccceeEEEEeCCCCChHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-----PCRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-----~~~~w~~v~~~~~~~~~~~~~  397 (501)
                      +.++||+.++..+...+...  ....+.|+|++|+|||++|+.++.  .....+     ....+  +.+.-.        
T Consensus       180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~--~~l~~~--------  245 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRV--MTLDMG--------  245 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCE--ECC-----------
T ss_pred             CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeE--EEeeCC--------
Confidence            56999999999999999653  234678999999999999999987  432211     12222  222111        


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh-----
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVAR-----  472 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~-----  472 (501)
                         ....+..   .....   ..+...-...+.+|++|  ...+..+.|.+.+..    ...++|.+|.......     
T Consensus       246 ---~~~~g~~---e~~~~---~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~----g~v~vI~at~~~e~~~~~~~~  310 (468)
T 3pxg_A          246 ---TKYRGEF---EDRLK---KVMDEIRQAGNIILFID--AAIDASNILKPSLAR----GELQCIGATTLDEYRKYIEKD  310 (468)
T ss_dssp             -------------CTTHH---HHHHHHHTCCCCEEEEC--C--------CCCTTS----SSCEEEEECCTTTTHHHHTTC
T ss_pred             ---ccccchH---HHHHH---HHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcC----CCEEEEecCCHHHHHHHhhcC
Confidence               0000000   11222   22333333567899999  222222334333332    2456666655443111     


Q ss_pred             -hcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          473 -SFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       473 -~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                       .+.+...++.+++++.++..+++...+
T Consensus       311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~  338 (468)
T 3pxg_A          311 AALERRFQPIQVDQPSVDESIQILQGLR  338 (468)
T ss_dssp             SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred             HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence             111134579999999999999988643

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.26  E-value=8.3e-06  Score=81.78  Aligned_cols=155  Identities=14%  Similarity=0.066  Sum_probs=84.3

Q ss_pred             cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.+..++.|..++..          .....+.+.|+|++|+|||+||+.++.  .....|   +.  +++..-.
T Consensus       113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~~---~~--v~~~~l~  185 (389)
T 3vfd_A          113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNATF---FN--ISAASLT  185 (389)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCEE---EE--ECSCCC-
T ss_pred             ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCcE---EE--eeHHHhh
Confidence            357799999999999888722          112346899999999999999999988  332222   12  3332211


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhc---CCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIF---SPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l---~~~~  454 (501)
                      +  .        ..      ......+...+...-...+.+|+||+++..             .....++..+   ... 
T Consensus       186 ~--~--------~~------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-  248 (389)
T 3vfd_A          186 S--K--------YV------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-  248 (389)
T ss_dssp             ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred             c--c--------cc------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-
Confidence            1  0        00      011111222222222345679999999753             1112222222   210 


Q ss_pred             CCCCCEEEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ......||.||.... +...+.+ ....+.++..+.++..+++...+
T Consensus       249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~  295 (389)
T 3vfd_A          249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLL  295 (389)
T ss_dssp             ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHH
Confidence            123445555665422 1111111 33578899999999999887654

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.22  E-value=2e-06  Score=83.73  Aligned_cols=124  Identities=10%  Similarity=0.113  Sum_probs=74.2

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-CRAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      ..+++|++..++.|.+++..+.  .+.+.++|++|+||||+|+.+.+.-. ...+. ..+++..+....... +++++..
T Consensus        20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~~~~   95 (323)
T 1sxj_B           20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQIKH   95 (323)
T ss_dssp             GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHHHHH
Confidence            3679999999999999997653  22388999999999999999985321 11121 223333333323222 2222222


Q ss_pred             hcCCCCcCcchHHHHHHHHc-cCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          211 VGGSKVEKQLDPQKKLRKLF-TENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      +...            ...+ .+++.+|||||++.  ...++.+...+.....++.+|+||...
T Consensus        96 ~~~~------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~  147 (323)
T 1sxj_B           96 FAQK------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS  147 (323)
T ss_dssp             HHHB------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred             HHhc------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence            2100            0012 35688999999865  444555554444444577888888653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.22  E-value=1.8e-05  Score=76.01  Aligned_cols=153  Identities=14%  Similarity=0.077  Sum_probs=85.2

Q ss_pred             cccceeecchhHHHHHHHhhcC----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLNS----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.+..++.|.+.+...          ....+.+.|+|++|+|||++|+.++.  .....|   +.  ++++.-.
T Consensus        19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~~~---~~--i~~~~l~   91 (297)
T 3b9p_A           19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSATF---LN--ISAASLT   91 (297)
T ss_dssp             CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTCEE---EE--EESTTTS
T ss_pred             CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EE--eeHHHHh
Confidence            4577999999999998877321          12346899999999999999999988  332222   22  3432211


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHH---hcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKR---IFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~---~l~~~~  454 (501)
                      .              ...  ..........+.......+.+|+||+++..             .....++.   .++...
T Consensus        92 ~--------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~  155 (297)
T 3b9p_A           92 S--------------KYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP  155 (297)
T ss_dssp             S--------------SSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred             h--------------ccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence            1              000  111111222222222346789999999652             11122322   233200


Q ss_pred             CCCCCEEEEEeCChH-----HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAY-----VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~-----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+.+..||.||....     +...   ....+.++..+.++..+++...+
T Consensus       156 ~~~~v~vi~~tn~~~~l~~~l~~R---~~~~i~~~~p~~~~r~~il~~~~  202 (297)
T 3b9p_A          156 DGDRIVVLAATNRPQELDEAALRR---FTKRVYVSLPDEQTRELLLNRLL  202 (297)
T ss_dssp             ---CEEEEEEESCGGGBCHHHHHH---CCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCCcEEEEeecCChhhCCHHHHhh---CCeEEEeCCcCHHHHHHHHHHHH
Confidence            123455666776532     2222   33577888888888888876653

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.20  E-value=4.7e-06  Score=85.74  Aligned_cols=155  Identities=12%  Similarity=0.112  Sum_probs=92.6

Q ss_pred             ccceeecchhHHHHHHHhhcC-----------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLNS-----------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..+++|.+..+++|.+++...           ....+.+.|+|++|+|||++|+.+++  .....|   +.  +++.   
T Consensus       203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~--vn~~---  272 (489)
T 3hu3_A          203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FL--INGP---  272 (489)
T ss_dssp             GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EE--EEHH---
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EE--EEch---
Confidence            457999999999998887432           34456899999999999999999988  332222   22  3321   


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQASPI  457 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~~~  457 (501)
                             ++...+.      ..........+.....+.+.+|+||+++..             ..+..|+..+.......
T Consensus       273 -------~l~~~~~------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~  339 (489)
T 3hu3_A          273 -------EIMSKLA------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA  339 (489)
T ss_dssp             -------HHHTSCT------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred             -------Hhhhhhc------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence                   1111111      111222334444444566789999998431             22334444443211233


Q ss_pred             CCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799          458 GSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       458 ~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +..||.||.... +...+.+   ....+.++..+.++-.++|..++
T Consensus       340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~  385 (489)
T 3hu3_A          340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT  385 (489)
T ss_dssp             CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred             ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence            455666665442 2222221   33478999999999999998765

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.20  E-value=6.5e-06  Score=81.98  Aligned_cols=157  Identities=15%  Similarity=0.109  Sum_probs=90.7

Q ss_pred             ccccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC
Q 010799          320 EEVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ  388 (501)
Q Consensus       320 ~~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~  388 (501)
                      ...+++.|-++..++|.+.+..           +-..++-|.++|++|+|||.||+.+++  .....|   +.  ++.+.
T Consensus       179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~--v~~s~  251 (437)
T 4b4t_I          179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LR--IVGSE  251 (437)
T ss_dssp             CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EE--EESGG
T ss_pred             CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EE--EEHHH
Confidence            3568899999999999776532           224457899999999999999999998  444333   11  22221


Q ss_pred             CCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCC
Q 010799          389 DFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSP  452 (501)
Q Consensus       389 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~  452 (501)
                                    +.....  ..+...+...+...-...+++|+||+++..                ..+..++..+..
T Consensus       252 --------------l~sk~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg  315 (437)
T 4b4t_I          252 --------------LIQKYL--GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG  315 (437)
T ss_dssp             --------------GCCSSS--SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred             --------------hhhccC--chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence                          111110  111122222233333356899999998751                112334433322


Q ss_pred             CCCCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799          453 QASPIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       453 ~~~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .....+..||.||-... +...+-.   ....+.++..+.++-.++|..++
T Consensus       316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l  366 (437)
T 4b4t_I          316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT  366 (437)
T ss_dssp             CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence            11233445555664433 3333321   23468899999999889887665

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.20  E-value=3.9e-06  Score=92.87  Aligned_cols=154  Identities=14%  Similarity=0.152  Sum_probs=83.0

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-----CCccceeEEEEeCCCCChHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-----NFPCRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-----~f~~~~w~~v~~~~~~~~~~~~  396 (501)
                      .++++||++++..+.+.+...  ..+.+.|+|++|+|||+||+.+++  ....     ......+-.++++.-      .
T Consensus       169 ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~l------~  238 (854)
T 1qvr_A          169 LDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQ--RIVKGDVPEGLKGKRIVSLQMGSL------L  238 (854)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHH--HHHHTCSCTTSTTCEEEEECC----------
T ss_pred             CcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHH--HHhcCCCchhhcCCeEEEeehHHh------h
Confidence            456999999999999998653  234678999999999999999987  3322     111222200322111      0


Q ss_pred             HHHHHHhccCCCCCCCCHHHHH-HHHHHhcC-CceEEEEEcCCCChh----------hHHHHHHhcCCCCCCCCCEEEEE
Q 010799          397 ADILRQLTQDEVDEESSLDDLE-SEFTGILY-EKRYLVVLDDVHSPG----------AWYDLKRIFSPQASPIGSRVILI  464 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~-~~l~~~l~-~~r~LlVlDnv~~~~----------~~~~l~~~l~~~~~~~~~~iIiT  464 (501)
                      .       .. . ......... ..+..... +.+.+|+||+++...          ..+.+...+..    .+..+|.+
T Consensus       239 ~-------g~-~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~----~~i~~I~a  305 (854)
T 1qvr_A          239 A-------GA-K-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR----GELRLIGA  305 (854)
T ss_dssp             ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT----TCCCEEEE
T ss_pred             c-------cC-c-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC----CCeEEEEe
Confidence            0       00 0 001122222 22222222 367899999998632          11234444433    23446655


Q ss_pred             eCChHH-----HhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          465 TREAYV-----ARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       465 tR~~~~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      |.....     ...+.+....+.+++++.++..+++...
T Consensus       306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~  344 (854)
T 1qvr_A          306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL  344 (854)
T ss_dssp             ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred             cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence            554432     1222223456999999999999998643

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.19  E-value=2.5e-05  Score=79.65  Aligned_cols=157  Identities=13%  Similarity=0.096  Sum_probs=88.7

Q ss_pred             cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.+...+.|.+.+..          .....+.+.|+|++|+|||+||+.+++  ..    .+..+  +.+....
T Consensus       132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~--~~----~~~~~--~~v~~~~  203 (444)
T 2zan_A          132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EA----NNSTF--FSISSSD  203 (444)
T ss_dssp             CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH--HC----CSSEE--EEECCC-
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--Hc----CCCCE--EEEeHHH
Confidence            457899999999999887621          112347899999999999999999998  33    12233  3333211


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCC-CC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQA-SP  456 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~-~~  456 (501)
                          +.    .......   ......++.   ..-...+.+|+||+++..             .....++..+.... ..
T Consensus       204 ----l~----~~~~g~~---~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~  269 (444)
T 2zan_A          204 ----LV----SKWLGES---EKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN  269 (444)
T ss_dssp             ----------------C---CCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred             ----HH----hhhcchH---HHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence                11    1111110   112222222   222346789999999863             11233444333210 13


Q ss_pred             CCCEEEEEeCChH-HHhhcC-CCCcceeCCCCChHHHHHHHHHhh
Q 010799          457 IGSRVILITREAY-VARSFS-PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       457 ~~~~iIiTtR~~~-~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+..||.||.... +...+. .....+.++..+.++..++|..++
T Consensus       270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l  314 (444)
T 2zan_A          270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHL  314 (444)
T ss_dssp             SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHH
Confidence            4556666665432 111111 134578899999999998887765

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.19  E-value=4.9e-06  Score=82.39  Aligned_cols=155  Identities=12%  Similarity=0.050  Sum_probs=87.2

Q ss_pred             cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.+..++.|.+.+..          .....+.+.|+|++|+|||+||+.++.  .....|   +.  ++++.-.
T Consensus        82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~--i~~~~l~  154 (357)
T 3d8b_A           82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGATF---FS--ISASSLT  154 (357)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTCEE---EE--EEGGGGC
T ss_pred             CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCCeE---EE--EehHHhh
Confidence            456799999999999888742          123457899999999999999999988  332222   22  4433211


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHH-HHHHHhcCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCC--
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLE-SEFTGILYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQA--  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~--  454 (501)
                      +              ...  . ...... ..+.......+.+|+||+++..             ..+..++..+....  
T Consensus       155 ~--------------~~~--g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~  217 (357)
T 3d8b_A          155 S--------------KWV--G-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS  217 (357)
T ss_dssp             C--------------SST--T-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred             c--------------ccc--c-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence            1              000  0 011111 2222222345789999998542             12334444333200  


Q ss_pred             CCCCCEEEEEeCChH-HHhhcCC-CCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAY-VARSFSP-SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~-~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+..||.||.... +.....+ ....+.++.++.++..+++...+
T Consensus       218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~  264 (357)
T 3d8b_A          218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLM  264 (357)
T ss_dssp             CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH
Confidence            123445555665432 2111111 33578899999999888887654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.19  E-value=8.6e-06  Score=76.62  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=86.6

Q ss_pred             cccceeecchhHHHHHHHhhc---C-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN---S-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.+..++.+.+.+..   .       ....+.+.|+|++|+|||+||+.+++  .....|   +.  ++...-.
T Consensus        10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~--i~~~~~~   82 (257)
T 1lv7_A           10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FT--ISGSDFV   82 (257)
T ss_dssp             CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCCE---EE--ECSCSST
T ss_pred             CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCCE---EE--EeHHHHH
Confidence            457899999888887665421   1       12235689999999999999999988  332222   22  3322111


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~  454 (501)
                      +.              .  .......+...+.......+.++++|+++..                ..+..++..+....
T Consensus        83 ~~--------------~--~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~  146 (257)
T 1lv7_A           83 EM--------------F--VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE  146 (257)
T ss_dssp             TS--------------C--CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HH--------------h--hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence            00              0  0112233334444444456789999998431                12233333333210


Q ss_pred             CCCCCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+..||.||.... +.....+   ....+.++..+.++-.+++...+
T Consensus       147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~  195 (257)
T 1lv7_A          147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM  195 (257)
T ss_dssp             SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence            233455666665543 2222211   23577888888888888776653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.18  E-value=6.1e-06  Score=78.01  Aligned_cols=47  Identities=13%  Similarity=0.209  Sum_probs=34.5

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++|+|.+..+.++.+.+..-......+.|+|++|+|||++|+.+++
T Consensus         5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~   51 (265)
T 2bjv_A            5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY   51 (265)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence            46689999999998877643223336788999999999999999987

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.10  E-value=1.6e-05  Score=76.77  Aligned_cols=160  Identities=14%  Similarity=0.161  Sum_probs=85.3

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQ  402 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~  402 (501)
                      ++++|++..+.++.+.+..-......|.|+|++|+|||++|+.+++..  ...-...+.  +++....  ..++..   .
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~--~~~~~~~v~--v~~~~~~--~~l~~~---~   72 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS--ARSDRPLVT--LNCAALN--ESLLES---E   72 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS--SCSSSCCCE--EECSSCC--HHHHHH---H
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC--cccCCCeEE--EeCCCCC--hHHHHH---H
Confidence            358999999999988885533444678899999999999999988732  111112233  5554322  222222   2


Q ss_pred             hccCCCCC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEEEeCChH-
Q 010799          403 LTQDEVDE-ESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVILITREAY-  469 (501)
Q Consensus       403 l~~~~~~~-~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIiTtR~~~-  469 (501)
                      +.+..... ..........+...   ..-+|+||+++.  ......|+..+....         .....+||.||.... 
T Consensus        73 lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~  149 (304)
T 1ojl_A           73 LFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA  149 (304)
T ss_dssp             HTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHH
T ss_pred             hcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHH
Confidence            22211100 00000000111111   124688999987  344555665554310         023577888776531 


Q ss_pred             -----------HHhhcCCCCcceeCCCCC--hHHHHHHHH
Q 010799          470 -----------VARSFSPSIFLHQLRPLN--EEESGKLFQ  496 (501)
Q Consensus       470 -----------~~~~~~~~~~~~~l~~L~--~~ea~~Lf~  496 (501)
                                 +...+  ....+.+++|.  .+|...|+.
T Consensus       150 ~~v~~g~fr~~L~~Rl--~~~~i~lPpL~eR~edi~~l~~  187 (304)
T 1ojl_A          150 EEVSAGRFRQDLYYRL--NVVAIEMPSLRQRREDIPLLAD  187 (304)
T ss_dssp             HHHHHTSSCHHHHHHH--SSEEEECCCSGGGGGGHHHHHH
T ss_pred             HHHHhCCcHHHHHhhc--CeeEEeccCHHHhHhhHHHHHH
Confidence                       11111  24457899998  566655554

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.09  E-value=3e-06  Score=72.13  Aligned_cols=46  Identities=11%  Similarity=0.132  Sum_probs=34.3

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -+++|++..++++.+.+..-......|.|+|++|+|||++|+.+++
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred             cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence            4589999999999888753222335688999999999999999877

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.09  E-value=1.1e-05  Score=78.19  Aligned_cols=166  Identities=13%  Similarity=0.160  Sum_probs=89.4

Q ss_pred             cceeecchhHHHHHHHhhcC------C-CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799          323 TAVVSMENDILKLAKLTLNS------S-DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~  395 (501)
                      .+++|.+..++.+...+...      . .....+.|+|++|+|||++|+.++.  .....-...+.  ++++...... .
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~--~~~~~~~~~~-~   91 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIR--IDMTEYMEKH-A   91 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEE--EEGGGCCSTT-H
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEE--eecccccccc-c
Confidence            45889999999998887542      1 1235899999999999999999887  33222222334  5554322211 1


Q ss_pred             HHHHHHHhccCCCCCCCC-HHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCC---------CCCCCEEEE
Q 010799          396 FADILRQLTQDEVDEESS-LDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQA---------SPIGSRVIL  463 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~---------~~~~~~iIi  463 (501)
                      ...+   ++......... ...+...+..   ....+|+||+++.  ...+..|+..+....         ...++.+|.
T Consensus        92 ~~~l---~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~  165 (311)
T 4fcw_A           92 VSRL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIM  165 (311)
T ss_dssp             HHHH---HCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEE
T ss_pred             HHHh---cCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEE
Confidence            1111   11111100101 1122222221   2346999999986  344555555443300         002344777


Q ss_pred             EeCCh---------------HH--------Hhhc-----CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          464 ITREA---------------YV--------ARSF-----SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       464 TtR~~---------------~~--------~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ||...               .+        ...+     .....++.+.+++.++..+++...+
T Consensus       166 ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l  229 (311)
T 4fcw_A          166 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM  229 (311)
T ss_dssp             EESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT
T ss_pred             ecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH
Confidence            77651               10        1111     1133578889999999888887643

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.07  E-value=5.9e-05  Score=82.41  Aligned_cols=156  Identities=15%  Similarity=0.197  Sum_probs=88.2

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC------CccceeEEEEeCCCCChHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN------FPCRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~------f~~~~w~~v~~~~~~~~~~~  395 (501)
                      .++++||+.++..+.+.|...  ....+.|+|++|+|||++|+.++.  .....      ....+|   ...    +..+
T Consensus       185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~--~l~~~~v~~~~~~~~~~---~~~----~~~l  253 (758)
T 1r6b_X          185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIY---SLD----IGSL  253 (758)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHH--HHHHTCSCGGGTTCEEE---ECC----CC--
T ss_pred             CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHH--HHHhCCCChhhcCCEEE---EEc----HHHH
Confidence            456999999999999998653  345678999999999999999887  33211      122222   111    0000


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh--------hhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799          396 FADILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP--------GAWYDLKRIFSPQASPIGSRVILITR  466 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~--------~~~~~l~~~l~~~~~~~~~~iIiTtR  466 (501)
                             +... . .....+.....+...+ ..++.+|+||+++..        ...+. ...+.......+..+|.+|.
T Consensus       254 -------~~~~-~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~-~~~L~~~l~~~~~~~I~at~  323 (758)
T 1r6b_X          254 -------LAGT-K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA-ANLIKPLLSSGKIRVIGSTT  323 (758)
T ss_dssp             --------CCC-C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHH-HHHHSSCSSSCCCEEEEEEC
T ss_pred             -------hccc-c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHH-HHHHHHHHhCCCeEEEEEeC
Confidence                   0000 0 1112333333333333 345789999999864        12221 12222111234566677766


Q ss_pred             ChHHHhhc------CCCCcceeCCCCChHHHHHHHHHh
Q 010799          467 EAYVARSF------SPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       467 ~~~~~~~~------~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      ........      .+....+.+++++.++..+++...
T Consensus       324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l  361 (758)
T 1r6b_X          324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL  361 (758)
T ss_dssp             HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred             chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence            54432111      112347899999999999888754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.05  E-value=1.4e-05  Score=80.28  Aligned_cols=155  Identities=17%  Similarity=0.137  Sum_probs=85.4

Q ss_pred             cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ...++.|-++..++|.+.+..           +-..++-+.++||+|+|||.||+.+++  .....|   +.  ++.+.-
T Consensus       170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~--v~~~~l  242 (428)
T 4b4t_K          170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IR--VNGSEF  242 (428)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EE--EEGGGT
T ss_pred             CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EE--Eecchh
Confidence            357899999999998776532           234567899999999999999999998  443333   11  333221


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQ  453 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~  453 (501)
                      .+              ...  ..+...+...+...-...+++|++|+++..                ..+..|+..+...
T Consensus       243 ~~--------------~~~--Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~  306 (428)
T 4b4t_K          243 VH--------------KYL--GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF  306 (428)
T ss_dssp             CC--------------SSC--SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred             hc--------------ccc--chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence            11              000  111222233333333456899999998641                1133344333321


Q ss_pred             CCCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCC-ChHHHHHHHHHh
Q 010799          454 ASPIGSRVILITREAY-VARSFS---PSIFLHQLRPL-NEEESGKLFQRR  498 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L-~~~ea~~Lf~~~  498 (501)
                      ....+..||.||-... +...+-   .....+.++.+ +.++-.++|..+
T Consensus       307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~  356 (428)
T 4b4t_K          307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI  356 (428)
T ss_dssp             CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence            1234455666665432 222221   12346778655 455555566544

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.04  E-value=3.6e-06  Score=76.04  Aligned_cols=125  Identities=17%  Similarity=0.176  Sum_probs=65.1

Q ss_pred             ccceeecch----hHHHHHHHhhcCCC--CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHH
Q 010799          322 VTAVVSMEN----DILKLAKLTLNSSD--KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSV  395 (501)
Q Consensus       322 ~~~fvGR~~----~~~~l~~~L~~~~~--~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~  395 (501)
                      .++|++...    .++.+.+++.....  ..+.+.|+|++|+|||+||+.+++  ........+.|  +++.      .+
T Consensus        24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~--~~~~------~~   93 (202)
T 2w58_A           24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLI--VYVP------EL   93 (202)
T ss_dssp             TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEE--EEHH------HH
T ss_pred             HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEE--EEhH------HH
Confidence            355666543    44455555543322  227899999999999999999988  44444444556  5542      33


Q ss_pred             HHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhh--HHHHHH-hcCCCCCCCCCEEEEEeCCh
Q 010799          396 FADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGA--WYDLKR-IFSPQASPIGSRVILITREA  468 (501)
Q Consensus       396 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~--~~~l~~-~l~~~~~~~~~~iIiTtR~~  468 (501)
                      ...+......      .........+.+.     -+|||||++.  ...  ...++. .+... ...+.++|+||...
T Consensus        94 ~~~~~~~~~~------~~~~~~~~~~~~~-----~~lilDei~~~~~~~~~~~~ll~~~l~~~-~~~~~~~i~tsn~~  159 (202)
T 2w58_A           94 FRELKHSLQD------QTMNEKLDYIKKV-----PVLMLDDLGAEAMSSWVRDDVFGPILQYR-MFENLPTFFTSNFD  159 (202)
T ss_dssp             HHHHHHC---------CCCHHHHHHHHHS-----SEEEEEEECCC---CCGGGTTHHHHHHHH-HHTTCCEEEEESSC
T ss_pred             HHHHHHHhcc------chHHHHHHHhcCC-----CEEEEcCCCCCcCCHHHHHHHHHHHHHHH-HhCCCCEEEEcCCC
Confidence            3333332211      1123333333322     3899999954  221  121221 22110 12356788888743

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.03  E-value=2.2e-05  Score=75.78  Aligned_cols=110  Identities=10%  Similarity=0.005  Sum_probs=72.8

Q ss_pred             ccccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhccccccc------ccceeEEEEcCCCCCHHHHHH
Q 010799          134 GILDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYECETVKE------YFQCRAWVPVPEELERRELVT  205 (501)
Q Consensus       134 ~~vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~------~F~~~~wv~vs~~~~~~~l~~  205 (501)
                      .+.||+++.++|...|...  ....+.+-|+|.+|+|||++++.|.+.-.-..      .| ..+.|.-..-.+...+..
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~   99 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE   99 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence            3789999999999888752  34567789999999999999999986432111      12 234555556678888999


Q ss_pred             HHHHHhcCCCCc--CcchHHHHHHHHc---cCCeEEEEEecCCC
Q 010799          206 DILKQVGGSKVE--KQLDPQKKLRKLF---TENRYLVVIINART  244 (501)
Q Consensus       206 ~i~~~~~~~~~~--~~~~~~~~l~~~l---~~kr~LlVlDdv~~  244 (501)
                      .|++++.+....  ...+....+...+   .++.++++||++..
T Consensus       100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~  143 (318)
T 3te6_A          100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPEN  143 (318)
T ss_dssp             HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred             HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence            999999654221  1112223333333   45678999999864

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.01  E-value=8.6e-06  Score=79.24  Aligned_cols=124  Identities=14%  Similarity=0.101  Sum_probs=72.2

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccccccc-ceeEEEEcCCCCCHHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYF-QCRAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F-~~~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      ..+++|++..++.|.+++....  .+.+.++|.+|+||||+|+.+++.-. ...+ ...+.+..+...... .+...+..
T Consensus        24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   99 (327)
T 1iqp_A           24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKE   99 (327)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHH-TTHHHHHH
T ss_pred             HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchH-HHHHHHHH
Confidence            3579999999999999998653  33488999999999999999985321 1111 112223222211110 11111111


Q ss_pred             hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      +...            .....+++.++|+|++..  ...++.+...+.....++++|+||...
T Consensus       100 ~~~~------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~  150 (327)
T 1iqp_A          100 FART------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS  150 (327)
T ss_dssp             HHHS------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             HHhh------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence            0000            001125778999999864  445666665554445578888888654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.99  E-value=2.2e-05  Score=80.18  Aligned_cols=156  Identities=15%  Similarity=0.100  Sum_probs=89.3

Q ss_pred             cccceeecchhHHHHHHHhhc---C-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN---S-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.++.++++.+.+..   .       ..-++-+.|+|++|+|||+||+.++.  .....|   +.  ++++.-.
T Consensus        14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~--is~~~~~   86 (476)
T 2ce7_A           14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FH--ISGSDFV   86 (476)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EE--EEGGGTT
T ss_pred             CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---ee--CCHHHHH
Confidence            457799999988888766521   1       12235689999999999999999988  333222   22  3333221


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~  454 (501)
                      ...          .      ..........+.......+.+|+||+++..                ..+..++..+....
T Consensus        87 ~~~----------~------g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~  150 (476)
T 2ce7_A           87 ELF----------V------GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD  150 (476)
T ss_dssp             TCC----------T------THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred             HHH----------h------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence            110          0      001122334444444567899999998652                12344444332210


Q ss_pred             CCCCCEEEEEeCChHHH-hhc-C--CCCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAYVA-RSF-S--PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~~~-~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+..||.||...... ... .  .....+.+++.+.++-.++|..++
T Consensus       151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~  199 (476)
T 2ce7_A          151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT  199 (476)
T ss_dssp             GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence            13355666677655322 111 1  123478899999888888876654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.99  E-value=1.2e-05  Score=87.98  Aligned_cols=147  Identities=14%  Similarity=0.086  Sum_probs=81.4

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-----CCccceeEEEEeCCCCChHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-----NFPCRAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-----~f~~~~w~~v~~~~~~~~~~~~~  397 (501)
                      +.++||+++++.+...|...  ....+.|+|++|+|||++|+.+++  ....     ......+  +.+.-         
T Consensus       180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~--~l~~~~~p~~l~~~~~--~~~~~---------  244 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRV--MTLDM---------  244 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCE--ECC-----------
T ss_pred             CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHH--HHhcCCCChhhcCCeE--EEecc---------
Confidence            56999999999999999653  334688999999999999999987  3311     1111112  11111         


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh-----
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVAR-----  472 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~-----  472 (501)
                        .....      ......+...+.......+.+|++|  ...+..+.+.+.+..    ...++|.||.......     
T Consensus       245 --g~~~~------G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~~----~~v~~I~at~~~~~~~~~~~d  310 (758)
T 3pxi_A          245 --GTKYR------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLAR----GELQCIGATTLDEYRKYIEKD  310 (758)
T ss_dssp             ----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTS----SSCEEEEECCTTTTHHHHTTC
T ss_pred             --ccccc------chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHhc----CCEEEEeCCChHHHHHHhhcc
Confidence              00000      0011122333333444677899999  222222333333322    3456666665444211     


Q ss_pred             -hcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          473 -SFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       473 -~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                       .+.+....+.+++++.++..++|...
T Consensus       311 ~al~rRf~~i~v~~p~~~~~~~il~~~  337 (758)
T 3pxi_A          311 AALERRFQPIQVDQPSVDESIQILQGL  337 (758)
T ss_dssp             SHHHHSEEEEECCCCCHHHHHHHHHHT
T ss_pred             HHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence             11113357999999999999998854

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.98  E-value=2.1e-05  Score=75.92  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=37.5

Q ss_pred             cceeecchhHHHHHHHhhc------------CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLN------------SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~------------~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++|.+..++.+...+..            .......+.|+|++|+|||++|+.+++
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999887753            112346788999999999999999988

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.98  E-value=4.9e-06  Score=78.82  Aligned_cols=156  Identities=12%  Similarity=0.073  Sum_probs=84.2

Q ss_pred             cccceeecchhHHHHHHHhhc----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.+..++.+.+.+..          +....+.+.|+|++|+|||+||+.+++  .....|   +.  ++++.-.
T Consensus         9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~--v~~~~~~   81 (268)
T 2r62_A            9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAHVPF---FS--MGGSSFI   81 (268)
T ss_dssp             CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH--HHTCCC---CC--CCSCTTT
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EE--echHHHH
Confidence            346799999999888876631          112234588999999999999999988  333322   11  2221111


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-----------------hHHHHHHhcCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG-----------------AWYDLKRIFSPQ  453 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-----------------~~~~l~~~l~~~  453 (501)
                      +.          +....   ......++....   ...+.+|+||+++...                 .+..++..+...
T Consensus        82 ~~----------~~~~~---~~~~~~~~~~a~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~  145 (268)
T 2r62_A           82 EM----------FVGLG---ASRVRDLFETAK---KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF  145 (268)
T ss_dssp             TS----------CSSSC---SSSSSTTHHHHH---HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred             Hh----------hcchH---HHHHHHHHHHHH---hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence            00          00000   111112222222   2356799999996531                 122333333221


Q ss_pred             C-CCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          454 A-SPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       454 ~-~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      . ......||.||.... +.....   .....+.+++++.++-.+++...+
T Consensus       146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~  196 (268)
T 2r62_A          146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI  196 (268)
T ss_dssp             SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred             ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence            0 112245666665443 111111   123578899999999888887654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.97  E-value=1.8e-05  Score=70.04  Aligned_cols=124  Identities=14%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             cceee----cchhHHHHHHHhhcCC-CCceEEEEEecCCCChHHHHHHHHcccccccCCc-cceeEEEEeCCCCChHHHH
Q 010799          323 TAVVS----MENDILKLAKLTLNSS-DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP-CRAWANVYVSQDFDMRSVF  396 (501)
Q Consensus       323 ~~fvG----R~~~~~~l~~~L~~~~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~-~~~w~~v~~~~~~~~~~~~  396 (501)
                      ++|++    ....++.+.+++.+-. .....+.|+|++|+|||||++.+++  ....... .+.+  ++      ..++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~~~~~--~~------~~~~~   79 (180)
T 3ec2_A           10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK--AIYEKKGIRGYF--FD------TKDLI   79 (180)
T ss_dssp             SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH--HHHHHSCCCCCE--EE------HHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH--HHHHHcCCeEEE--EE------HHHHH
Confidence            44554    3344455555553321 2346899999999999999999988  3321111 2334  33      23444


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          397 ADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAW--YDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       397 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~--~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                      ..+.........      ......+.     +.-+||||++..  .+.+  ..+...+... ...+..+|+||...
T Consensus        80 ~~~~~~~~~~~~------~~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~-~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           80 FRLKHLMDEGKD------TKFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYR-YNNLKSTIITTNYS  143 (180)
T ss_dssp             HHHHHHHHHTCC------SHHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHH-HHTTCEEEEECCCC
T ss_pred             HHHHHHhcCchH------HHHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHH-HHcCCCEEEEcCCC
Confidence            444433332211      12222222     456899999973  2222  2333333220 12467888888643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.95  E-value=7.7e-06  Score=72.61  Aligned_cols=46  Identities=11%  Similarity=0.054  Sum_probs=38.7

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ...++|+++.++.+.+++...  ....+.|+|.+|+|||+||+.+.+.
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           21 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999764  3445789999999999999999853

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.93  E-value=2.9e-05  Score=80.99  Aligned_cols=24  Identities=46%  Similarity=0.661  Sum_probs=21.4

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .-.+++|.|++|+|||||++.++.
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g  303 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVE  303 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHH
Confidence            336999999999999999999886

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.90  E-value=7.7e-05  Score=76.30  Aligned_cols=48  Identities=25%  Similarity=0.289  Sum_probs=37.1

Q ss_pred             ccceeecchhHHHHHHHh---hcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          322 VTAVVSMENDILKLAKLT---LNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L---~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ..+++|.++.++.+..++   ..+....+.+.++|++|+|||++|+.+++.
T Consensus        36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~   86 (456)
T 2c9o_A           36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE   86 (456)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence            467999999888665544   333334468999999999999999998873

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.88  E-value=6.9e-05  Score=81.02  Aligned_cols=156  Identities=11%  Similarity=0.095  Sum_probs=91.6

Q ss_pred             cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ..+++.|-++.+++|.+.+.-           +-..++-|.++|++|+|||+||+.+++  ....+|   +.  ++++  
T Consensus       202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~--v~~~--  272 (806)
T 3cf2_A          202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FL--INGP--  272 (806)
T ss_dssp             CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EE--EEHH--
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EE--EEhH--
Confidence            356789999999998877521           123457899999999999999999998  443332   22  3322  


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-------------hHHHHHHhcCCCCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG-------------AWYDLKRIFSPQASP  456 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-------------~~~~l~~~l~~~~~~  456 (501)
                              ++.    ....  ..+...+...+.......+++|+||+++...             ....|+..+......
T Consensus       273 --------~l~----sk~~--gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~  338 (806)
T 3cf2_A          273 --------EIM----SKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR  338 (806)
T ss_dssp             --------HHH----SSCT--THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred             --------Hhh----cccc--hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence                    111    1111  1123334445555556678999999987521             122233222221012


Q ss_pred             CCCEEEEEeCCh-HHHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799          457 IGSRVILITREA-YVARSFSP---SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       457 ~~~~iIiTtR~~-~~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+..||.||... .+...+.+   -...++++..+.++-.++|..++
T Consensus       339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l  385 (806)
T 3cf2_A          339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT  385 (806)
T ss_dssp             GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred             CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence            234455555443 33333321   34578999999999888887654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.84  E-value=1.3e-05  Score=70.92  Aligned_cols=118  Identities=13%  Similarity=0.151  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHhcCC-CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc
Q 010799          139 NKEVNKLADFLIRSH-SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE  217 (501)
Q Consensus       139 ~~~~~~l~~~L~~~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~  217 (501)
                      ....+.+.+++..-. ..-..+.|+|.+|+|||||++.+++.......+.. +++      +..++...+...+......
T Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-~~~------~~~~~~~~~~~~~~~~~~~   92 (180)
T 3ec2_A           20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-YFF------DTKDLIFRLKHLMDEGKDT   92 (180)
T ss_dssp             HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-CEE------EHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-EEE------EHHHHHHHHHHHhcCchHH
Confidence            334444444444321 23467899999999999999999864321222222 222      4556665555544322111


Q ss_pred             CcchHHHHHHHHccCCeEEEEEecCC--ChhHHH--HHhhcCCC-CCCCcEEEEEeccc
Q 010799          218 KQLDPQKKLRKLFTENRYLVVIINAR--TPDIWD--ILKYLFPN-SSNGSRVILSFQEA  271 (501)
Q Consensus       218 ~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~--~l~~~~~~-~~~gs~iivTtr~~  271 (501)
                         .    +.+.+. +.-+|||||++  ..+.|.  .+...+.. ...|..||+||...
T Consensus        93 ---~----~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           93 ---K----FLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             ---H----HHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             ---H----HHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence               1    222222 34588999997  334442  22222211 12467788888543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.84  E-value=2.9e-05  Score=75.03  Aligned_cols=124  Identities=15%  Similarity=0.133  Sum_probs=67.5

Q ss_pred             ccccchhhHHHHHHHHhcC-------------CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH
Q 010799          134 GILDLNKEVNKLADFLIRS-------------HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER  200 (501)
Q Consensus       134 ~~vg~~~~~~~l~~~L~~~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~  200 (501)
                      +++|.+..++.|.+++..-             ......+-++|.+|+|||+||+.+.+.-.........-++.++..   
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---  108 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD---  108 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence            5889998888887765421             234456889999999999999877653221111111123333210   


Q ss_pred             HHHHHHHHHHhcCCCCcC-cchHHHHHHHHccCCeEEEEEecCC-----------ChhHHHHHhhcCCCCCCCcEEEEEe
Q 010799          201 RELVTDILKQVGGSKVEK-QLDPQKKLRKLFTENRYLVVIINAR-----------TPDIWDILKYLFPNSSNGSRVILSF  268 (501)
Q Consensus       201 ~~l~~~i~~~~~~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~-----------~~~~~~~l~~~~~~~~~gs~iivTt  268 (501)
                               .+....... .......+...   +.-+|+||++.           +......|...+.....+..||.||
T Consensus       109 ---------~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~  176 (309)
T 3syl_A          109 ---------DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG  176 (309)
T ss_dssp             ---------GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred             ---------HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence                     111110000 01112222222   23489999986           3344455555555455567788888


Q ss_pred             cccc
Q 010799          269 QEAD  272 (501)
Q Consensus       269 r~~~  272 (501)
                      ....
T Consensus       177 ~~~~  180 (309)
T 3syl_A          177 YADR  180 (309)
T ss_dssp             CHHH
T ss_pred             ChHH
Confidence            6553

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.79  E-value=2.9e-05  Score=65.97  Aligned_cols=47  Identities=11%  Similarity=-0.028  Sum_probs=33.1

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+++|....+.++.+.+..-.....-|-|+|.+|+|||++|+.+++.
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            46789999988888887641112233678999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.77  E-value=2.3e-05  Score=67.13  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.7

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+.|+|++|+|||+|++.++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999988

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.75  E-value=9.9e-05  Score=73.16  Aligned_cols=46  Identities=11%  Similarity=-0.043  Sum_probs=38.4

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+++|++..++.|.+.+.... ....+.|+|.+|+||||+|+.+.+.
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~   61 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG   61 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            569999999999999997653 2346789999999999999998753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.74  E-value=0.00011  Score=66.87  Aligned_cols=98  Identities=17%  Similarity=0.099  Sum_probs=55.4

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhc---------
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLT---------  404 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~---------  404 (501)
                      .|...+..+=..-.++.|.|++|+|||||+..++.  .   .-..++|  ++.....+...+. .+...+.         
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~--i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAY--VDTEGGFSPERLV-QMAETRGLNPEEALSR   79 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEE--EESSCCCCHHHHH-HHHHTTTCCHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEE--EECCCCCCHHHHH-HHHHhcCCChHHHhhc
Confidence            34444432223446999999999999999999876  1   1234667  6665444444333 2322221         


Q ss_pred             --cCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 010799          405 --QDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS  439 (501)
Q Consensus       405 --~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~  439 (501)
                        ................+...+..+.-+||+|....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~  116 (220)
T 2cvh_A           80 FILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA  116 (220)
T ss_dssp             EEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred             EEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence              11111111223345555566655578999999865

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.73  E-value=5.8e-05  Score=73.00  Aligned_cols=121  Identities=12%  Similarity=0.077  Sum_probs=71.6

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-CRAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      ..+++|++..++.|.+++..+.  .+.+-++|.+|+||||+|+.+.+.-. ...+. ..+.+..+......         
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~---------   83 (319)
T 2chq_A           16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID---------   83 (319)
T ss_dssp             GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT---------
T ss_pred             HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH---------
Confidence            3568999999999998887643  33388999999999999999985311 11111 11222222211100         


Q ss_pred             hcCCCCcCcchHHHHHHHH--c-cCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          211 VGGSKVEKQLDPQKKLRKL--F-TENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                             ...+....+...  + .+++.++|+|++..  ....+.+...+.....++++|+||...
T Consensus        84 -------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~  142 (319)
T 2chq_A           84 -------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV  142 (319)
T ss_dssp             -------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred             -------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence                   001111111111  1 25678999999864  444566666666555677888887654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.70  E-value=9.8e-05  Score=62.75  Aligned_cols=46  Identities=9%  Similarity=0.026  Sum_probs=34.8

Q ss_pred             ccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          134 GILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       134 ~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      +++|....+.++.+.+..-.....-|-|+|.+|+|||++|+.+++.
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999998888642222234679999999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.66  E-value=8.6e-05  Score=77.60  Aligned_cols=162  Identities=13%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             cceeecchhHHHHHHHhh----cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTL----NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~----~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      .+++|.++..+.+...+.    ...-....+.|+|++|+|||+||+.++.  .....|..     +++....+...+...
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~~~-----i~~~~~~~~~~~~g~  153 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK--SLGRKFVR-----ISLGGVRDESEIRGH  153 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH--HHTCEEEE-----ECCCC----------
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCeEE-----EEecccchhhhhhhH
Confidence            558888887777755442    1222456899999999999999999988  33333322     333322221111111


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh------hHHHHHHhcCCCCC-------------CCCC
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG------AWYDLKRIFSPQAS-------------PIGS  459 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~------~~~~l~~~l~~~~~-------------~~~~  459 (501)
                      .....       ..........+........ +++||+++...      ....++..+.....             ....
T Consensus       154 ~~~~i-------g~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v  225 (543)
T 3m6a_A          154 RRTYV-------GAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV  225 (543)
T ss_dssp             -----------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred             HHHHh-------ccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence            11000       0111222333333333334 88899998631      12444444422000             0234


Q ss_pred             EEEEEeCChH-HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          460 RVILITREAY-VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       460 ~iIiTtR~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+|.||.... +...+.+...++.+++++.++-.+++.++.
T Consensus       226 ~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l  266 (543)
T 3m6a_A          226 LFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL  266 (543)
T ss_dssp             EEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred             EEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence            5665655432 111111123478999999999988887653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.64  E-value=3.1e-05  Score=69.82  Aligned_cols=122  Identities=8%  Similarity=-0.025  Sum_probs=61.9

Q ss_pred             cccccch----hhHHHHHHHHhcCCCC--eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHH
Q 010799          133 TGILDLN----KEVNKLADFLIRSHSS--LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTD  206 (501)
Q Consensus       133 ~~~vg~~----~~~~~l~~~L~~~~~~--~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~  206 (501)
                      .++++..    ...+.+.+++......  ...+.|+|.+|+||||||+.+++...  ......++++.      ..+...
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~------~~~~~~   96 (202)
T 2w58_A           25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYV------PELFRE   96 (202)
T ss_dssp             TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEH------HHHHHH
T ss_pred             hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEh------HHHHHH
Confidence            3455543    3344555565543221  26788999999999999999996432  22334455543      345555


Q ss_pred             HHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHH--Hhh-cCCCC-CCCcEEEEEecc
Q 010799          207 ILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDI--LKY-LFPNS-SNGSRVILSFQE  270 (501)
Q Consensus       207 i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~--l~~-~~~~~-~~gs~iivTtr~  270 (501)
                      +...+...   ...    .+...+.+. -+|||||++.  ...|..  +.. .+... ..+.++|+||..
T Consensus        97 ~~~~~~~~---~~~----~~~~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~  158 (202)
T 2w58_A           97 LKHSLQDQ---TMN----EKLDYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF  158 (202)
T ss_dssp             HHHC---C---CCH----HHHHHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHhccc---hHH----HHHHHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence            54433211   111    122222222 3899999954  333321  111 11111 235568888753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.62  E-value=8.6e-05  Score=70.76  Aligned_cols=48  Identities=13%  Similarity=-0.030  Sum_probs=38.3

Q ss_pred             ccccccchhhHHHHHHHHhcC-----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRS-----------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.+..+++|.+.+...           -....-+-|+|.+|+|||+||+.+.+.
T Consensus        16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            467999999999998887531           123456889999999999999999853

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.57  E-value=0.00027  Score=68.94  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=83.4

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR  401 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~  401 (501)
                      ...++|+++.++.+...+..+    ..+.++|++|+|||+||+.+++  .....|.   .  +.+.......++.    .
T Consensus        26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~--~~~~~~~---~--i~~~~~~~~~~l~----g   90 (331)
T 2r44_A           26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK--TMDLDFH---R--IQFTPDLLPSDLI----G   90 (331)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH--HTTCCEE---E--EECCTTCCHHHHH----E
T ss_pred             ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH--HhCCCeE---E--EecCCCCChhhcC----C
Confidence            356899999999998887653    3688999999999999999988  3333321   1  3333333222221    1


Q ss_pred             HhccCCCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCC--hhhHHHHHHhcCCC---------CCCCCCEEEEEeCCh
Q 010799          402 QLTQDEVDEESSLDDLESEFTGILYE--KRYLVVLDDVHS--PGAWYDLKRIFSPQ---------ASPIGSRVILITREA  468 (501)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~--~~~~~~l~~~l~~~---------~~~~~~~iIiTtR~~  468 (501)
                      .......  ....        .+..+  ...++++|+++.  ......+...+...         .......+|.|+...
T Consensus        91 ~~~~~~~--~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~  160 (331)
T 2r44_A           91 TMIYNQH--KGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV  160 (331)
T ss_dssp             EEEEETT--TTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred             ceeecCC--CCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence            1100000  0000        00000  125899999976  33344444433210         012345555555422


Q ss_pred             H------HHhh-cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          469 Y------VARS-FSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       469 ~------~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .      +... .......+.+++++.++-.+++.+++
T Consensus       161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~  198 (331)
T 2r44_A          161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVS  198 (331)
T ss_dssp             CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHH
T ss_pred             cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcc
Confidence            1      1111 11122358999999999999887764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.56  E-value=0.00033  Score=65.51  Aligned_cols=156  Identities=10%  Similarity=0.051  Sum_probs=80.7

Q ss_pred             cccceeecchhHHHHHHHhhc--C--------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN--S--------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~--~--------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..++++|.+....++.++...  .        -.-.+-+.|+|++|+|||||++.++.  ....   +.+.  ++..   
T Consensus        14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~--~~~~---~~i~--~~~~---   83 (254)
T 1ixz_A           14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARV---PFIT--ASGS---   83 (254)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH--HTTC---CEEE--EEHH---
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCC---CEEE--eeHH---
Confidence            456789988777777654421  1        01123499999999999999999988  3321   2222  2211   


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~  454 (501)
                         +    +.....      ......+...+...-...+.++++||++..                .....+...+....
T Consensus        84 ---~----~~~~~~------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~  150 (254)
T 1ixz_A           84 ---D----FVEMFV------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE  150 (254)
T ss_dssp             ---H----HHHSCT------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred             ---H----HHHHHh------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence               1    111000      000111222222222345689999998531                11233433333310


Q ss_pred             CCCCCEEEEEeCChHHH-hhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAYVA-RSFSP---SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~~~-~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ......++.||...... ....+   ....+.++..+.++-.+++...+
T Consensus       151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~  199 (254)
T 1ixz_A          151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA  199 (254)
T ss_dssp             TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence            11222344455554422 11111   34578999999988888887553

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.55  E-value=0.00027  Score=68.64  Aligned_cols=120  Identities=12%  Similarity=0.044  Sum_probs=71.6

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV  211 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~  211 (501)
                      ..+++|.+..+..|.+++.... ...++-+.|.+|+|||++|+.+.+...     ...+.+..+. .... .++..+..+
T Consensus        25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~-~~~~-~i~~~~~~~   96 (324)
T 3u61_B           25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD-CKID-FVRGPLTNF   96 (324)
T ss_dssp             TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT-CCHH-HHHTHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc-cCHH-HHHHHHHHH
Confidence            4679999999999999998543 335677788899999999999985321     1123333333 2222 222222221


Q ss_pred             cCCCCcCcchHHHHHHHHccCCeEEEEEecCCChh---HHHHHhhcCCCCCCCcEEEEEecccc
Q 010799          212 GGSKVEKQLDPQKKLRKLFTENRYLVVIINARTPD---IWDILKYLFPNSSNGSRVILSFQEAD  272 (501)
Q Consensus       212 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iivTtr~~~  272 (501)
                      ...             ....+++-+|+||++..-.   ..+.+...+.....++++|+||....
T Consensus        97 ~~~-------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~  147 (324)
T 3u61_B           97 ASA-------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID  147 (324)
T ss_dssp             HHB-------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred             Hhh-------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence            100             0012467899999997643   34445444433234677888876543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.55  E-value=0.00057  Score=70.19  Aligned_cols=152  Identities=11%  Similarity=0.059  Sum_probs=84.0

Q ss_pred             cccceeecchhHHHHHHHhh---cC-------CCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTL---NS-------SDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~---~~-------~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ...+++|.++.+.++.+.+.   ..       -.-.+-+.|+|++|+|||+||+.++.  ....   ..+.  ++.+.-.
T Consensus        29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~--~~~~---~~i~--i~g~~~~  101 (499)
T 2dhr_A           29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARV---PFIT--ASGSDFV  101 (499)
T ss_dssp             CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH--HTTC---CEEE--EEGGGGT
T ss_pred             CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEE--EehhHHH
Confidence            35679999988777766542   11       01124599999999999999999988  3332   1223  3332111


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC----CceEEEEEcCCCCh----------------hhHHHHHHhc
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY----EKRYLVVLDDVHSP----------------GAWYDLKRIF  450 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~----~~r~LlVlDnv~~~----------------~~~~~l~~~l  450 (501)
                      +.                    ........+...+.    ..+.++++|+++..                ..+..++..+
T Consensus       102 ~~--------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L  161 (499)
T 2dhr_A          102 EM--------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM  161 (499)
T ss_dssp             SS--------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred             Hh--------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence            10                    00111222333332    23579999998631                1123444444


Q ss_pred             CCCCCCCCCEEEEEeCChHHHh-hcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799          451 SPQASPIGSRVILITREAYVAR-SFSP---SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       451 ~~~~~~~~~~iIiTtR~~~~~~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..........+|.||....... ...+   ....+.++..+.++-.++|..++
T Consensus       162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~  214 (499)
T 2dhr_A          162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA  214 (499)
T ss_dssp             GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred             cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence            4310123344555665554321 1111   34578999999998888887654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.52  E-value=0.00013  Score=71.57  Aligned_cols=134  Identities=13%  Similarity=0.052  Sum_probs=70.7

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccce-eEEEEcCCCCCHHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQC-RAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~-~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      ..+++|++..++.|..++.....  ..+.++|.+|+||||+|+.+.+.-.....+.. ...+..+....... +.+.+..
T Consensus        36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  112 (353)
T 1sxj_D           36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREKVKN  112 (353)
T ss_dssp             TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTHHHH
T ss_pred             HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHHHHH
Confidence            46789999999999999876532  23789999999999999999854211111211 12222233222222 2222222


Q ss_pred             hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecc
Q 010799          211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQE  270 (501)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~  270 (501)
                      +...........  .....-.++.-+|++|++..  ....+.+...+.......++|++|..
T Consensus       113 ~~~~~~~~~~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~  172 (353)
T 1sxj_D          113 FARLTVSKPSKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY  172 (353)
T ss_dssp             HHHSCCCCCCTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred             Hhhhcccccchh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence            211100000000  00111123556899999753  33344455444333446677777743

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.48  E-value=0.00083  Score=64.26  Aligned_cols=25  Identities=16%  Similarity=0.465  Sum_probs=22.5

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++.+.++|++|+|||+||+.+++
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999999998

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.46  E-value=0.00036  Score=69.01  Aligned_cols=48  Identities=6%  Similarity=0.031  Sum_probs=36.6

Q ss_pred             ccccccchhhHHH---HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNK---LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~---l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|++..++.   +.+.+.......+.+-++|.+|+|||+||+.+.+.
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999988776   44555444333467889999999999999999864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.46  E-value=0.00099  Score=63.15  Aligned_cols=156  Identities=10%  Similarity=0.053  Sum_probs=81.1

Q ss_pred             cccceeecchhHHHHHHHhhc--C-------C-CCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN--S-------S-DKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~--~-------~-~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..++++|.++...++.++...  .       + .-.+-+.|+|++|+|||||++.++.  ...   ...+.  ++..   
T Consensus        38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~--~~~---~~~i~--~~~~---  107 (278)
T 1iy2_A           38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EAR---VPFIT--ASGS---  107 (278)
T ss_dssp             CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH--HTT---CCEEE--EEHH---
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH--HcC---CCEEE--ecHH---
Confidence            456799998887777665421  0       0 1123489999999999999999988  332   12222  3221   


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~  454 (501)
                         +    +......      .....+...+...-...+.++++||++..                ..+..+...+....
T Consensus       108 ---~----~~~~~~~------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~  174 (278)
T 1iy2_A          108 ---D----FVEMFVG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE  174 (278)
T ss_dssp             ---H----HHHSTTT------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred             ---H----HHHHHhh------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence               1    1110000      00111122222222345689999998531                11233444444310


Q ss_pred             CCCCCEEEEEeCChHHH-hhc-C--CCCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAYVA-RSF-S--PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~~~-~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ......++.||...... ... .  .....+.++..+.++-.+++..++
T Consensus       175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~  223 (278)
T 1iy2_A          175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA  223 (278)
T ss_dssp             TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence            11122334455544321 111 1  134578999999998888887654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.45  E-value=0.00044  Score=67.21  Aligned_cols=48  Identities=10%  Similarity=-0.028  Sum_probs=37.9

Q ss_pred             ccccccchhhHHHHHHHHh----------cCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLI----------RSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~----------~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..++.|.+.+.          ......+-+-++|.+|+|||+||+.+.+.
T Consensus        17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4679999999999988873          11122456889999999999999999863

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.42  E-value=0.00068  Score=66.19  Aligned_cols=48  Identities=25%  Similarity=0.241  Sum_probs=38.2

Q ss_pred             cccceeecchhHHHHHHHhhcC---CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLNS---SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~---~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....++|.+..++.+...+..+   ......+.|+|++|+||||||+.++.
T Consensus        23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3467899988888887776432   23346799999999999999999988

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.42  E-value=0.00031  Score=69.13  Aligned_cols=45  Identities=11%  Similarity=-0.017  Sum_probs=36.0

Q ss_pred             ccccccchhhHHHHHHHH-hcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFL-IRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L-~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.+.....|.+++ .... ... +.|+|.+|+||||||+.+.+
T Consensus        13 ~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           13 LNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             GGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred             HHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence            357899999999988888 4332 223 89999999999999998865

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.42  E-value=0.00082  Score=68.21  Aligned_cols=44  Identities=16%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             eecchhHHHHHHHhhcC-----CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          326 VSMENDILKLAKLTLNS-----SDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       326 vGR~~~~~~l~~~L~~~-----~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .|.++-++.+.+.+...     .+....|+|.|.+|+|||+|...+...
T Consensus       150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~  198 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE  198 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCC
Confidence            35666667776666421     124568999999999999999998864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.41  E-value=0.00012  Score=70.79  Aligned_cols=47  Identities=11%  Similarity=0.137  Sum_probs=32.2

Q ss_pred             ccceeec----chhHHHHHHHhhcCCC-CceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSM----ENDILKLAKLTLNSSD-KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR----~~~~~~l~~~L~~~~~-~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++|++.    ...+..+.+++..... ....+.|+|++|+|||+||..+++
T Consensus       123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455543    3344455566643222 247899999999999999999988

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.40  E-value=0.00092  Score=64.22  Aligned_cols=95  Identities=11%  Similarity=0.016  Sum_probs=58.9

Q ss_pred             ccccccchhhHHHHHHHHhcC-----------CCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH
Q 010799          132 KTGILDLNKEVNKLADFLIRS-----------HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER  200 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~  200 (501)
                      -.+++|.+..+.+|.+++...           -...+.+.++|.+|+|||+||+.+.+..  ...     ++.+    +.
T Consensus        14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v----~~   82 (301)
T 3cf0_A           14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISI----KG   82 (301)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEE----CH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEE----Eh
Confidence            457899999888888776521           1234578899999999999999999633  222     2222    33


Q ss_pred             HHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC
Q 010799          201 RELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART  244 (501)
Q Consensus       201 ~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~  244 (501)
                      ..+...    ..+.   ....+...+.........+|+||++..
T Consensus        83 ~~l~~~----~~g~---~~~~~~~~f~~a~~~~p~il~iDEid~  119 (301)
T 3cf0_A           83 PELLTM----WFGE---SEANVREIFDKARQAAPCVLFFDELDS  119 (301)
T ss_dssp             HHHHHH----HHTT---CTTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred             HHHHhh----hcCc---hHHHHHHHHHHHHhcCCeEEEEEChHH
Confidence            333322    2111   112233344444455678999999863

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.40  E-value=0.00072  Score=65.64  Aligned_cols=48  Identities=10%  Similarity=-0.010  Sum_probs=37.2

Q ss_pred             ccccccchhhHHHHHHHHhc---------C-CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR---------S-HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~---------~-~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..++.|.+.+..         . ....+-+-++|.+|+|||+||+.+.+.
T Consensus        11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence            46789999988888877631         1 123467889999999999999999863

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.40  E-value=0.00021  Score=72.70  Aligned_cols=100  Identities=11%  Similarity=0.126  Sum_probs=58.3

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccce--eEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQC--RAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN  233 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~--~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k  233 (501)
                      ...+.|+|.+|+||||||+.+++.  ....|..  .+++      +...+..++...+....       ...+...+..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  194 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYI------TSEKFLNDLVDSMKEGK-------LNEFREKYRKK  194 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEE------EHHHHHHHHHHHHHTTC-------HHHHHHHHTTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEe------eHHHHHHHHHHHHHccc-------HHHHHHHhcCC
Confidence            567899999999999999999863  3223311  2333      34445555555554321       23344444435


Q ss_pred             eEEEEEecCCChh----HHHHHhhcCCC-CCCCcEEEEEecc
Q 010799          234 RYLVVIINARTPD----IWDILKYLFPN-SSNGSRVILSFQE  270 (501)
Q Consensus       234 r~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~iivTtr~  270 (501)
                      .-+|+|||+....    .-+.+...+.. ...|..||+||.+
T Consensus       195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~  236 (440)
T 2z4s_A          195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR  236 (440)
T ss_dssp             CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            6799999985322    22233322211 1346788888875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.39  E-value=0.00047  Score=64.56  Aligned_cols=48  Identities=6%  Similarity=-0.069  Sum_probs=35.3

Q ss_pred             ccccccchhhHHHHHHHHh---cCC-------CCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLI---RSH-------SSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~---~~~-------~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..+..|.+++.   ..+       ...+-+-++|.+|+|||+||+.+.+.
T Consensus         5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A            5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            3578999888877766553   111       23355779999999999999999863

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.39  E-value=0.0013  Score=62.15  Aligned_cols=155  Identities=12%  Similarity=0.010  Sum_probs=80.0

Q ss_pred             cccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC
Q 010799          321 EVTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD  389 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~  389 (501)
                      ...++.|-++..+.|.+.+..           +-.-.+-++|+|++|+|||+||+.++.  ....   ..+.  +....-
T Consensus         8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~--~~~~---~~i~--i~g~~l   80 (274)
T 2x8a_A            8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN--ESGL---NFIS--VKGPEL   80 (274)
T ss_dssp             ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH--HTTC---EEEE--EETTTT
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH--HcCC---CEEE--EEcHHH
Confidence            346688888888888765421           011123499999999999999999988  3222   1233  332221


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh-cCCceEEEEEcCCCCh-------------hhHHHHHHhcCCCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI-LYEKRYLVVLDDVHSP-------------GAWYDLKRIFSPQAS  455 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDnv~~~-------------~~~~~l~~~l~~~~~  455 (501)
                      .+..              .  . .....+..+.+. -...++++++|+++..             .....+...+.....
T Consensus        81 ~~~~--------------~--~-~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~  143 (274)
T 2x8a_A           81 LNMY--------------V--G-ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA  143 (274)
T ss_dssp             CSST--------------T--H-HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS
T ss_pred             Hhhh--------------h--h-HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc
Confidence            1100              0  0 001111112121 1235789999998752             112333333332101


Q ss_pred             CCCCEEEEEeCChHHH-hhc---CCCCcceeCCCCChHHHHHHHHHhh
Q 010799          456 PIGSRVILITREAYVA-RSF---SPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       456 ~~~~~iIiTtR~~~~~-~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....-++.+|....+. ...   +.-...+.++..+.++-.++|....
T Consensus       144 ~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          144 RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT  191 (274)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred             cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence            2233444556555422 111   1145678899999999998887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.39  E-value=0.0009  Score=68.31  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=29.1

Q ss_pred             ecchhHHHHHHHhhcC-----CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          327 SMENDILKLAKLTLNS-----SDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       327 GR~~~~~~l~~~L~~~-----~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      |.++-++.+.+.+...     ......|++.|.+|+|||+|...+...
T Consensus       171 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             THHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             chHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence            4445555555444211     134568999999999999999998853

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.38  E-value=0.00058  Score=67.88  Aligned_cols=46  Identities=24%  Similarity=0.260  Sum_probs=35.7

Q ss_pred             cceeecchhHHHHHHHhhc----------------------------CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLN----------------------------SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~----------------------------~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++|.+...+.|...+..                            .......+.++|++|+|||++|+.+++
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence            4579999988888776620                            112335789999999999999999988

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.38  E-value=0.00034  Score=66.16  Aligned_cols=47  Identities=19%  Similarity=0.134  Sum_probs=34.9

Q ss_pred             cccccchhhHHHHHH-------HHhc-CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLAD-------FLIR-SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~-------~L~~-~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..++|.....++++.       .+.. .......+-++|.+|+|||+||+.+.+.
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            467888777666665       3321 1345677889999999999999999864

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.34  E-value=0.0013  Score=66.88  Aligned_cols=48  Identities=10%  Similarity=-0.012  Sum_probs=37.7

Q ss_pred             ccccccchhhHHHHHHHHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..++.|.+.+..          .....+-+-++|.+|+|||+||+.+.+.
T Consensus       133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            46799999999998887731          0123467889999999999999999863

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.28  E-value=0.00029  Score=68.29  Aligned_cols=48  Identities=15%  Similarity=-0.001  Sum_probs=38.1

Q ss_pred             ccccccchhhHHHHHHHHhc---CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR---SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~---~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|++..+..+..++..   .......+.|+|.+|+|||+||+.+++.
T Consensus        11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~   61 (324)
T 1hqc_A           11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE   61 (324)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred             HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            46799999999998888763   1223456789999999999999999853

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.23  E-value=0.0009  Score=65.98  Aligned_cols=48  Identities=8%  Similarity=-0.100  Sum_probs=37.9

Q ss_pred             ccccccchhhHHHHHHHHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..++.|.+.+..          .....+.+.|+|.+|+|||+||+.+.+.
T Consensus        83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A           83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999998887752          1123567889999999999999999853

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.20  E-value=0.0012  Score=67.01  Aligned_cols=46  Identities=13%  Similarity=0.026  Sum_probs=37.7

Q ss_pred             ccccccchhhH---HHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEV---NKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~---~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.+..+   ..|...+....  ...+-++|.+|+||||||+.+.+.
T Consensus        25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH
Confidence            46789998888   67777777653  467889999999999999999853

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.19  E-value=0.00022  Score=63.36  Aligned_cols=112  Identities=17%  Similarity=0.060  Sum_probs=64.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC---CCChHHHHHHHHHHhccC-------CCCCC-----
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ---DFDMRSVFADILRQLTQD-------EVDEE-----  411 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~---~~~~~~~~~~i~~~l~~~-------~~~~~-----  411 (501)
                      ..|.+++..|.||||+|...+.  +.-.+=..+.+  +....   .+...++    +..+...       .....     
T Consensus        29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~--vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~  100 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGV--VQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREA  100 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEE--EESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEE--EEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHH
Confidence            5677777777999999988766  43333333444  32221   2223333    3333210       00000     


Q ss_pred             --CCHHHHHHHHHHhcCCceE-EEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          412 --SSLDDLESEFTGILYEKRY-LVVLDDVHS-----PGAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       412 --~~~~~~~~~l~~~l~~~r~-LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                        ..........++.+.+.+| |||||++..     .-..+++...+..  ...+..||+|+|+.
T Consensus       101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~a  163 (196)
T 1g5t_A          101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA--RPGHQTVIITGRGC  163 (196)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT--SCTTCEEEEECSSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh--CcCCCEEEEECCCC
Confidence              1123345666777766655 999999853     2334556666666  57789999999986

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.15  E-value=0.00036  Score=66.84  Aligned_cols=69  Identities=19%  Similarity=0.302  Sum_probs=46.3

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe--CCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV--SQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTG  423 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~  423 (501)
                      .+++.|+|++|+|||+||.+++.  .   .-..+.|  +++  ....+..                 ..+.+.....+.+
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~--~---~G~~Vly--Is~~~eE~v~~~-----------------~~~le~~l~~i~~  178 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGE--A---LGGKDKY--ATVRFGEPLSGY-----------------NTDFNVFVDDIAR  178 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHH--H---HHTTSCC--EEEEBSCSSTTC-----------------BCCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH--h---CCCCEEE--EEecchhhhhhh-----------------hcCHHHHHHHHHH
Confidence            36789999999999999999987  3   1223567  776  2221100                 1345566666666


Q ss_pred             hcCCceEEEEEcCCCC
Q 010799          424 ILYEKRYLVVLDDVHS  439 (501)
Q Consensus       424 ~l~~~r~LlVlDnv~~  439 (501)
                      .+...+ +||+|++..
T Consensus       179 ~l~~~~-LLVIDsI~a  193 (331)
T 2vhj_A          179 AMLQHR-VIVIDSLKN  193 (331)
T ss_dssp             HHHHCS-EEEEECCTT
T ss_pred             HHhhCC-EEEEecccc
Confidence            665555 999999876

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.14  E-value=0.00098  Score=68.26  Aligned_cols=44  Identities=14%  Similarity=0.099  Sum_probs=37.2

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++|++.++..+++.|....  ..-+-++|.+|+|||+||+.+.+
T Consensus       180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            569999999999999997643  23457899999999999999875

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.12  E-value=0.0022  Score=59.79  Aligned_cols=38  Identities=21%  Similarity=0.173  Sum_probs=28.9

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...-+..++....++...+.++|++|+|||.+|..+++
T Consensus        89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A           89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            34446666644324456899999999999999999887

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.11  E-value=0.0015  Score=64.26  Aligned_cols=48  Identities=10%  Similarity=-0.037  Sum_probs=37.0

Q ss_pred             ccccccchhhHHHHHHHHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..++.|.+.+..          .....+-|-++|.+|+|||+||+.+.+.
T Consensus        50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence            45789999999999887731          1112345788999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.09  E-value=0.00036  Score=61.28  Aligned_cols=46  Identities=11%  Similarity=-0.005  Sum_probs=38.5

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ...++|++..+..+.+.+...  ....+.|+|.+|+||||||+.+.+.
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           21 LDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             cchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999764  3445689999999999999999853

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.06  E-value=0.00099  Score=65.01  Aligned_cols=47  Identities=19%  Similarity=0.019  Sum_probs=39.0

Q ss_pred             ccccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|++..+..+..++...   ......+-|+|.+|+|||+||+.+.+
T Consensus        28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            467999999999999988742   23455688999999999999999975

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.03  E-value=0.0014  Score=59.31  Aligned_cols=83  Identities=18%  Similarity=0.002  Sum_probs=51.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCC-----------CCcCcc---h
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGS-----------KVEKQL---D  221 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~-----------~~~~~~---~  221 (501)
                      -.++.|+|.+|+|||||+..+..     ..=...+|+.....++...+.. +.+.++..           ......   .
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR   93 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence            46899999999999999999875     1224567888777666665543 33332221           111111   1


Q ss_pred             HHHHHHHHccCCeEEEEEecCCC
Q 010799          222 PQKKLRKLFTENRYLVVIINART  244 (501)
Q Consensus       222 ~~~~l~~~l~~kr~LlVlDdv~~  244 (501)
                      ....++..++.+.-+||||.+..
T Consensus        94 ~~~~~~~l~~~~~~lliiD~~~~  116 (220)
T 2cvh_A           94 VIGSLKKTVDSNFALVVVDSITA  116 (220)
T ss_dssp             HHHHHHHHCCTTEEEEEEECCCC
T ss_pred             HHHHHHHHhhcCCCEEEEcCcHH
Confidence            23445555554567999999754

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.02  E-value=0.0018  Score=63.39  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799          333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--  409 (501)
Q Consensus       333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--  409 (501)
                      ..|...|. .+=..-+++.|+|++|+|||||+..++.  .....-..++|  ++.....+..     .+..+......  
T Consensus        47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~Vly--Id~E~s~~~~-----ra~rlgv~~~~l~  117 (356)
T 3hr8_A           47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAF--IDAEHALDPV-----YAKNLGVDLKSLL  117 (356)
T ss_dssp             HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHHTCCGGGCE
T ss_pred             HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EecccccchH-----HHHHcCCchhhhh
Confidence            34555553 2324457999999999999999999887  33332234567  7765554433     34444433211  


Q ss_pred             --CCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 010799          410 --EESSLDDLESEFTGILY-EKRYLVVLDDVHS  439 (501)
Q Consensus       410 --~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~  439 (501)
                        ...+.++....+...+. ...-++|+|.+..
T Consensus       118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~  150 (356)
T 3hr8_A          118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVAA  150 (356)
T ss_dssp             EECCSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred             hhhccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence              34466677777666654 3455899998764

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.99  E-value=0.00039  Score=63.50  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=62.2

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHh
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-EESSLDDLESEFTGI  424 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~  424 (501)
                      -.++.++|+.|+||||++..+++  +...+-..+..  +.....  .. ....++..++..... ......++...+.+.
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli--~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~   84 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLV--FKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN   84 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEE--EEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred             cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEE--EEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence            46899999999999999988877  44433323333  322211  11 112333333322111 112345566666666


Q ss_pred             cCCce-EEEEEcCCCCh-hhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799          425 LYEKR-YLVVLDDVHSP-GAWYDLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       425 l~~~r-~LlVlDnv~~~-~~~~~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                      +.+.+ -+|++|.++.. .++-++...+..    .+..||+|.+.
T Consensus        85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~----~gi~Vil~Gl~  125 (223)
T 2b8t_A           85 SFNDETKVIGIDEVQFFDDRICEVANILAE----NGFVVIISGLD  125 (223)
T ss_dssp             TSCTTCCEEEECSGGGSCTHHHHHHHHHHH----TTCEEEEECCS
T ss_pred             hhCCCCCEEEEecCccCcHHHHHHHHHHHh----CCCeEEEEecc
Confidence            55544 49999999753 222223333333    27889999984

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.98  E-value=0.0033  Score=63.76  Aligned_cols=43  Identities=14%  Similarity=0.287  Sum_probs=31.1

Q ss_pred             ecchhHHHHHHHhhcC---------CCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          327 SMENDILKLAKLTLNS---------SDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       327 GR~~~~~~l~~~L~~~---------~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      |.++-++.+.+.+...         ......++|.|.+|+|||||...+...
T Consensus       152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence            5566666666665321         123468999999999999999998764

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.97  E-value=0.003  Score=62.99  Aligned_cols=48  Identities=10%  Similarity=-0.029  Sum_probs=37.9

Q ss_pred             ccccccchhhHHHHHHHHhcC----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRS----------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..+..|.+++...          ....+-+-|+|.+|+|||+||+.+.+.
T Consensus       114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999998887320          112457889999999999999999753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.97  E-value=0.0033  Score=59.98  Aligned_cols=48  Identities=13%  Similarity=0.001  Sum_probs=37.8

Q ss_pred             ccccccchhhHHHHHHHHhcC----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRS----------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..+..|.+++...          ....+.+.|+|.+|+||||||+.+.+.
T Consensus        20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999998877421          112457889999999999999999853

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.95  E-value=0.0011  Score=64.29  Aligned_cols=112  Identities=10%  Similarity=0.073  Sum_probs=58.6

Q ss_pred             HHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchH
Q 010799          143 NKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDP  222 (501)
Q Consensus       143 ~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~  222 (501)
                      ..+..++.........+.|+|.+|+||||||+.+.+...-. .+ ..+++      +...+...+...+...       .
T Consensus        24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i------~~~~~~~~~~~~~~~~-------~   88 (324)
T 1l8q_A           24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYS------SADDFAQAMVEHLKKG-------T   88 (324)
T ss_dssp             HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEE------EHHHHHHHHHHHHHHT-------C
T ss_pred             HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEE------EHHHHHHHHHHHHHcC-------c
Confidence            34444444333245678899999999999999998632111 11 12333      3344454544444321       0


Q ss_pred             HHHHHHHccCCeEEEEEecCCChh---H-HHHHhhcCCC-CCCCcEEEEEecc
Q 010799          223 QKKLRKLFTENRYLVVIINARTPD---I-WDILKYLFPN-SSNGSRVILSFQE  270 (501)
Q Consensus       223 ~~~l~~~l~~kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTtr~  270 (501)
                      ...+...+. +.-+|+|||+....   . .+.+...+.. ...|..||+||.+
T Consensus        89 ~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~  140 (324)
T 1l8q_A           89 INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR  140 (324)
T ss_dssp             HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             HHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            222333333 35689999985422   1 2233322211 1245678888753

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.94  E-value=0.0034  Score=59.92  Aligned_cols=83  Identities=17%  Similarity=0.163  Sum_probs=53.7

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccC--CccceeEEEEeCCCCChHHHHHHHHHHhccCCCC----CCCCHHHH-HHH
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKN--FPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD----EESSLDDL-ESE  420 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~--f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-~~~  420 (501)
                      ++.|+|++|+|||||+.+++.  .....  -..++|  ++..+..+..     .++.++.+...    ...+.+++ ...
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vly--Id~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i  100 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLF--YDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDM  100 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEE--EESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEE--EeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHH
Confidence            789999999999999999876  33332  234677  7776655543     25555544321    34455665 444


Q ss_pred             HHHh--cC-CceEEEEEcCCCC
Q 010799          421 FTGI--LY-EKRYLVVLDDVHS  439 (501)
Q Consensus       421 l~~~--l~-~~r~LlVlDnv~~  439 (501)
                      +...  +. .+.-|||+|.+..
T Consensus       101 ~~~l~~i~~~~~~lvVIDSI~a  122 (333)
T 3io5_A          101 VNQLDAIERGEKVVVFIDSLGN  122 (333)
T ss_dssp             HHHHHTCCTTCCEEEEEECSTT
T ss_pred             HHHHHHhhccCceEEEEecccc
Confidence            4333  33 4678999999875

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.92  E-value=0.0012  Score=63.56  Aligned_cols=46  Identities=11%  Similarity=0.091  Sum_probs=36.5

Q ss_pred             cccccchhhHHHHHHHHhcC-------CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIRS-------HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++|.+..++.+...+...       ......+.++|.+|+||||+|+.+.+
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence            35789999888888877642       11245789999999999999999985

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.91  E-value=0.0011  Score=62.18  Aligned_cols=47  Identities=4%  Similarity=-0.099  Sum_probs=33.5

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..++|....+.++.+.+..-......+-|+|.+|+|||+||+.+++.
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence            45789999998888777642112245679999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.91  E-value=0.00087  Score=73.80  Aligned_cols=204  Identities=16%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             EEEEEeeCChhhHHHHhhhh----cccccccccceeEEEEcCCCC-------------------CHHHHHHHHHHHhcCC
Q 010799          158 TISVVDVAGSVMTTDLWKSY----ECETVKEYFQCRAWVPVPEEL-------------------ERRELVTDILKQVGGS  214 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~----~~~~v~~~F~~~~wv~vs~~~-------------------~~~~l~~~i~~~~~~~  214 (501)
                      +++|+|..|+|||||.+.+.    +.........   .+.+.+.+                   . .+-..++++.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~---~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~  538 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR---TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFT  538 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSC---EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcCCCcccccee---EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCC


Q ss_pred             ---------CCcCcchHHHHHHHHccCCeEEEEEecCCC---hhHHHHHhhcCCCCCCCcEEEEEeccccchh--cccCC
Q 010799          215 ---------KVEKQLDPQKKLRKLFTENRYLVVIINART---PDIWDILKYLFPNSSNGSRVILSFQEADAAR--CRNMS  280 (501)
Q Consensus       215 ---------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtr~~~va~--~~~~~  280 (501)
                               .-..-+.-.-.|...|-.+.-+|+||...+   ...-..+...+..  .|..||++|.+.+.+.  |..+-
T Consensus       539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii  616 (986)
T 2iw3_A          539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYII  616 (986)
T ss_dssp             HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEE
T ss_pred             hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEE


Q ss_pred             CCCCCccc----------CcceeeeccccCCCCCCCCCCCCCCCCccccccccceeecchhH-------HHHHHHhhcCC
Q 010799          281 FFGGESSF----------KPKYIAYAASEDDGGNDDRALPKQVPDEEISEEVTAVVSMENDI-------LKLAKLTLNSS  343 (501)
Q Consensus       281 ~l~~~~~~----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~fvGR~~~~-------~~l~~~L~~~~  343 (501)
                      .+.+....          ...........-.........|.+.............+-.++--       ..+.+-+.-.=
T Consensus       617 ~L~~G~iv~~~G~~~e~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I  696 (986)
T 2iw3_A          617 NYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQC  696 (986)
T ss_dssp             EEETTEEEEEESCHHHHHHHCGGGGGSSSTTTCCCCCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEE
T ss_pred             EEECCeeecCCCCHHHHHhhhHHHHHHHhhhhhhhhccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEE


Q ss_pred             CCceEEEEEecCCCChHHHHHHHH
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIY  367 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~  367 (501)
                      ..-.+++|.|+.|+|||||.+.++
T Consensus       697 ~~GeivaIiGpNGSGKSTLLklLa  720 (986)
T 2iw3_A          697 SLSSRIAVIGPNGAGKSTLINVLT  720 (986)
T ss_dssp             ETTCEEEECSCCCHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.91  E-value=0.0039  Score=59.85  Aligned_cols=116  Identities=9%  Similarity=0.021  Sum_probs=67.9

Q ss_pred             cchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccc-ccc-cccceeEEEEcCC-CCCHHHHHHHHHHHhcC
Q 010799          137 DLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECE-TVK-EYFQCRAWVPVPE-ELERRELVTDILKQVGG  213 (501)
Q Consensus       137 g~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~-~v~-~~F~~~~wv~vs~-~~~~~~l~~~i~~~~~~  213 (501)
                      |-++.++.|.+.+..+.  .+..-++|.+|+||||+|+.+.+.. ... .+.+. .++..+. ...... .+++++.+..
T Consensus         1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~   76 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNY   76 (305)
T ss_dssp             ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhh
Confidence            33455666777776553  6788899999999999999987531 111 23333 3333322 233332 2334444432


Q ss_pred             CCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecc
Q 010799          214 SKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQE  270 (501)
Q Consensus       214 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~  270 (501)
                      ...              .+++-++|+|++..  ....+.|...+..-...+.+|++|.+
T Consensus        77 ~p~--------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~  121 (305)
T 2gno_A           77 SPE--------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR  121 (305)
T ss_dssp             CCS--------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred             ccc--------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence            211              24567889999863  55567777666555567788877754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.89  E-value=0.00085  Score=61.38  Aligned_cols=116  Identities=15%  Similarity=0.145  Sum_probs=60.0

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC----------------
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD----------------  409 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~----------------  409 (501)
                      -.+++|.|++|+|||||++.++.  .....-..+.|  +...  .....+...+. .+......                
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~--~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   95 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIY--VTTE--ESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK   95 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEE--EESS--SCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEE--EEcc--cCHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence            36999999999999999999886  22222223455  4432  23333333322 22211100                


Q ss_pred             ------CCCCHHHHHHHHHHhcCC-ce--EEEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 010799          410 ------EESSLDDLESEFTGILYE-KR--YLVVLDDVHS-----PGAWYDLKRIFSPQASPIGSRVILITREA  468 (501)
Q Consensus       410 ------~~~~~~~~~~~l~~~l~~-~r--~LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~iIiTtR~~  468 (501)
                            ...+..++...+...+.. ++  .+||+|+...     ......+...+.......+..||++|...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A           96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence                  011445555555554432 33  4999999763     22233333333220012478899998876

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.87  E-value=0.0032  Score=61.98  Aligned_cols=98  Identities=17%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCC---
Q 010799          333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV---  408 (501)
Q Consensus       333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~---  408 (501)
                      ..|..+|. .+=...+++.|+|++|+|||+||..++.  .....-..++|  ++.....+..     .+..++.+..   
T Consensus        60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vly--i~~E~s~~~~-----~a~~~g~d~~~l~  130 (366)
T 1xp8_A           60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAF--IDAEHALDPV-----YARALGVNTDELL  130 (366)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHTTCCGGGCE
T ss_pred             HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEE--EECCCChhHH-----HHHHcCCCHHHce
Confidence            34444453 2223446999999999999999999877  33322345778  7776554432     1333333211   


Q ss_pred             -CCCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC
Q 010799          409 -DEESSLDDLESEFTGILYEK-RYLVVLDDVHS  439 (501)
Q Consensus       409 -~~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~  439 (501)
                       ....+.+++...+...+... .-+||+|.+..
T Consensus       131 i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~  163 (366)
T 1xp8_A          131 VSQPDNGEQALEIMELLVRSGAIDVVVVDSVAA  163 (366)
T ss_dssp             EECCSSHHHHHHHHHHHHTTTCCSEEEEECTTT
T ss_pred             eecCCcHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence             12346677777777766543 45899999754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.87  E-value=0.0029  Score=62.02  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=59.3

Q ss_pred             HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799          333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--  409 (501)
Q Consensus       333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--  409 (501)
                      ..|..+|. .+=..-+++.|+|++|+||||||..++.  .....-..++|  ++.....+..     .+..++.....  
T Consensus        47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vly--i~~E~~~~~~-----~a~~lG~~~~~l~  117 (349)
T 2zr9_A           47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAF--IDAEHALDPE-----YAKKLGVDTDSLL  117 (349)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHTTCCGGGCE
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEE--EECCCCcCHH-----HHHHcCCCHHHeE
Confidence            34444553 2323447999999999999999999886  33322245677  7776544432     23334322111  


Q ss_pred             --CCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          410 --EESSLDDLESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       410 --~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                        ...+.++....+...... +.-+||+|.+..
T Consensus       118 i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~  150 (349)
T 2zr9_A          118 VSQPDTGEQALEIADMLVRSGALDIIVIDSVAA  150 (349)
T ss_dssp             EECCSSHHHHHHHHHHHHTTTCCSEEEEECGGG
T ss_pred             EecCCCHHHHHHHHHHHHhcCCCCEEEEcChHh
Confidence              234566666666666544 456999999754

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.87  E-value=0.0015  Score=67.79  Aligned_cols=48  Identities=15%  Similarity=0.016  Sum_probs=39.7

Q ss_pred             ccccccchhhHHHHHHHHhcCC---------------CCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRSH---------------SSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~---------------~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|++..+++|.++|....               +..+.+-|+|.+|+||||||+.+.+.
T Consensus        38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~  100 (516)
T 1sxj_A           38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE  100 (516)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999997410               13468899999999999999999854

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.84  E-value=0.0028  Score=57.83  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=21.5

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .-.+++|.|++|+|||||++.++.
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347999999999999999999876

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.83  E-value=0.0018  Score=56.42  Aligned_cols=56  Identities=13%  Similarity=-0.033  Sum_probs=35.6

Q ss_pred             HHHHHHhcCCceEEEEEcCCCCh---h----------------hHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          418 ESEFTGILYEKRYLVVLDDVHSP---G----------------AWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       418 ~~~l~~~l~~~r~LlVlDnv~~~---~----------------~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      .-.+.+.+..++-+|+||.-...   .                ....+...+... ...|..+|++|.+...+..+
T Consensus        91 rv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l-~~~g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A           91 LIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGL-QREGFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             HHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTH-HHHTCSEEEEECSHHHHHHE
T ss_pred             HHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhH-HhcCCcEEEEeCCHHHhhhh
Confidence            34566667788899999986441   1                224445555441 23477899999987766543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.81  E-value=0.0043  Score=60.59  Aligned_cols=45  Identities=11%  Similarity=0.114  Sum_probs=36.3

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.+..++.|...+..+.  .+.+.++|.+|+||||+|+.+.+
T Consensus        24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence            3568898888888888887653  33388999999999999999875

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.80  E-value=0.0018  Score=62.29  Aligned_cols=47  Identities=11%  Similarity=0.063  Sum_probs=36.7

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+++|....+.++.+.+..-......|-|+|.+|+|||++|+.+++.
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~   48 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC   48 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence            35889999999988888652222345679999999999999999864

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.74  E-value=0.0029  Score=64.98  Aligned_cols=47  Identities=11%  Similarity=-0.026  Sum_probs=37.1

Q ss_pred             cccccchhhHHHHHHHHhcC-----------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIRS-----------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+++|.+..+.+|.+++...           -....-+-|+|.+|+|||+||+.+.+.
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~  261 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE  261 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999988877531           123456789999999999999999853

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.73  E-value=0.0064  Score=59.42  Aligned_cols=104  Identities=14%  Similarity=0.129  Sum_probs=58.8

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV  408 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~  408 (501)
                      ..|..+|..+=..-.++.|+|++|+|||+||..++.......    .-..++|  ++....++...+. .++..+.....
T Consensus       109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vly--i~~E~~~~~~~l~-~~~~~~g~~~~  185 (343)
T 1v5w_A          109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIF--IDTENTFRPDRLR-DIADRFNVDHD  185 (343)
T ss_dssp             HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEE--EESSSCCCHHHHH-HHHHHTTCCHH
T ss_pred             hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEE--EECCCCCCHHHHH-HHHHHcCCCHH
Confidence            344445533334557999999999999999999877321211    1235677  7776655555443 33333332210


Q ss_pred             --------CCCCCHH---HHHHHHHHhcC---CceEEEEEcCCCC
Q 010799          409 --------DEESSLD---DLESEFTGILY---EKRYLVVLDDVHS  439 (501)
Q Consensus       409 --------~~~~~~~---~~~~~l~~~l~---~~r~LlVlDnv~~  439 (501)
                              ....+.+   ++...+...+.   .+.-+||+|.+..
T Consensus       186 ~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~  230 (343)
T 1v5w_A          186 AVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA  230 (343)
T ss_dssp             HHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred             HHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence                    0111222   33344445443   4567999999865

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.70  E-value=0.0028  Score=62.17  Aligned_cols=98  Identities=16%  Similarity=0.159  Sum_probs=57.3

Q ss_pred             HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799          333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--  409 (501)
Q Consensus       333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--  409 (501)
                      ..|..+|. .+=...+++.|+|.+|+||||||..++.  .....-..++|  ++.....+..     .+..+......  
T Consensus        49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vly--id~E~s~~~~-----~a~~~g~~~~~l~  119 (356)
T 1u94_A           49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPI-----YARKLGVDIDNLL  119 (356)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHTTCCGGGCE
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEE--EeCCCCccHH-----HHHHcCCChhhee
Confidence            34444453 2223447999999999999999999887  33322235677  7776555432     13333332110  


Q ss_pred             --CCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 010799          410 --EESSLDDLESEFTGILY-EKRYLVVLDDVHS  439 (501)
Q Consensus       410 --~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~  439 (501)
                        ...+.+++...+..... ...-+||+|.+..
T Consensus       120 i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~  152 (356)
T 1u94_A          120 CSQPDTGEQALEICDALARSGAVDVIVVDSVAA  152 (356)
T ss_dssp             EECCSSHHHHHHHHHHHHHHTCCSEEEEECGGG
T ss_pred             eeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHH
Confidence              22345556555555443 3445899999753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.69  E-value=0.0012  Score=70.98  Aligned_cols=204  Identities=15%  Similarity=0.078  Sum_probs=0.0

Q ss_pred             EEEEEeeCChhhHHHH---------------------hhhhcccccc---------------------------------
Q 010799          158 TISVVDVAGSVMTTDL---------------------WKSYECETVK---------------------------------  183 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa---------------------~~v~~~~~v~---------------------------------  183 (501)
                      +++|+|..|+|||||+                     +.+..-..-.                                 
T Consensus        46 ~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~  125 (670)
T 3ux8_A           46 LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIY  125 (670)
T ss_dssp             EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeechh


Q ss_pred             -------------------------cccceeEEEEcCCCCCHHHHHHHH-----------HHHhcCCCCcCcch------
Q 010799          184 -------------------------EYFQCRAWVPVPEELERRELVTDI-----------LKQVGGSKVEKQLD------  221 (501)
Q Consensus       184 -------------------------~~F~~~~wv~vs~~~~~~~l~~~i-----------~~~~~~~~~~~~~~------  221 (501)
                                               .-++...|..-........-....           +..++.........      
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSG  205 (670)
T 3ux8_A          126 DYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSG  205 (670)
T ss_dssp             -------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCBGGGSCH
T ss_pred             hhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCCH


Q ss_pred             ---HHHHHHHHccCCeE--EEEEecCCC------hhHHHHHhhcCCCCCCCcEEEEEeccccchh-cccCCCCCCCcccC
Q 010799          222 ---PQKKLRKLFTENRY--LVVIINART------PDIWDILKYLFPNSSNGSRVILSFQEADAAR-CRNMSFFGGESSFK  289 (501)
Q Consensus       222 ---~~~~l~~~l~~kr~--LlVlDdv~~------~~~~~~l~~~~~~~~~gs~iivTtr~~~va~-~~~~~~l~~~~~~~  289 (501)
                         -.-.|...|-.+.-  +|+||...+      ......+...+...  |..||++|.+.+++. |..+-.+.......
T Consensus       206 Ge~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~  283 (670)
T 3ux8_A          206 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVVEHDEDTMLAADYLIDIGPGAGIH  283 (670)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT--TCEEEEECCCHHHHHHCSEEEEECSSSGGG
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHhhCCEEEEeccccccc


Q ss_pred             cceeeeccccCCCCCCCCC--------CCCCCCCccccccccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHH
Q 010799          290 PKYIAYAASEDDGGNDDRA--------LPKQVPDEEISEEVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTA  361 (501)
Q Consensus       290 ~~~~~~~~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~  361 (501)
                      .-.+............+..        .................+.-...-....+-+.-.=..-.+++|.|+.|+||||
T Consensus       284 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKST  363 (670)
T 3ux8_A          284 GGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKST  363 (670)
T ss_dssp             CCSEEEEECHHHHHTCTTCHHHHHHTTSSCCCCCSSCCCCCSCEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHH
T ss_pred             CCEEEEecCHHHHhcCchhHHHHHhccccccccccccccccccceeecCccccccccceeEecCCCEEEEEeeCCCCHHH


Q ss_pred             HH
Q 010799          362 LV  363 (501)
Q Consensus       362 LA  363 (501)
                      |+
T Consensus       364 Ll  365 (670)
T 3ux8_A          364 LV  365 (670)
T ss_dssp             HH
T ss_pred             HH

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.62  E-value=0.00064  Score=65.16  Aligned_cols=69  Identities=14%  Similarity=0.017  Sum_probs=42.2

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc--CCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV--PEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN  233 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v--s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k  233 (501)
                      -+++-|+|++|+||||||.++...     .-....|++.  ++..+.             .. .........+.+.+.+.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~~-~~le~~l~~i~~~l~~~  183 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------YN-TDFNVFVDDIARAMLQH  183 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------CB-CCHHHHHHHHHHHHHHC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------hh-cCHHHHHHHHHHHHhhC
Confidence            356789999999999999998753     1123356666  332111             00 11122344556666555


Q ss_pred             eEEEEEecCCC
Q 010799          234 RYLVVIINART  244 (501)
Q Consensus       234 r~LlVlDdv~~  244 (501)
                      + +||+|++..
T Consensus       184 ~-LLVIDsI~a  193 (331)
T 2vhj_A          184 R-VIVIDSLKN  193 (331)
T ss_dssp             S-EEEEECCTT
T ss_pred             C-EEEEecccc
Confidence            6 999999864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.61  E-value=0.0071  Score=58.62  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC----CccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN----FPCRAWANVYVSQDFDMRSVFADILRQLTQDEV  408 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~----f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~  408 (501)
                      ..|..+|..+=..-.++.|+|++|+|||+||..++........    -..++|  ++....++...+. +++..++....
T Consensus        94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vly--i~~e~~~~~~~l~-~~~~~~g~~~~  170 (324)
T 2z43_A           94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVY--IDTEGTFRWERIE-NMAKALGLDID  170 (324)
T ss_dssp             HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEE--EESSSCCCHHHHH-HHHHHTTCCHH
T ss_pred             hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEE--EECCCCCCHHHHH-HHHHHhCCCHH
Confidence            3444444322234469999999999999999998863211111    235677  7776655555443 33444433210


Q ss_pred             --------CCCCCHH---HHHHHHHHhcC--CceEEEEEcCCCC
Q 010799          409 --------DEESSLD---DLESEFTGILY--EKRYLVVLDDVHS  439 (501)
Q Consensus       409 --------~~~~~~~---~~~~~l~~~l~--~~r~LlVlDnv~~  439 (501)
                              ....+.+   ++...+...+.  .+.-+||+|.+..
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  214 (324)
T 2z43_A          171 NVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS  214 (324)
T ss_dssp             HHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred             HHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence                    0122333   34455555554  4567999999875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.60  E-value=0.0057  Score=52.90  Aligned_cols=102  Identities=12%  Similarity=-0.018  Sum_probs=55.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc------------CcchHHH
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE------------KQLDPQK  224 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~------------~~~~~~~  224 (501)
                      .+|.|.|++|+||||+|+.+ ...    .|.   ++.      ..++++.....-+.....            .......
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~----g~~---~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER----GAK---VIV------MSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVAR   67 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT----TCE---EEE------HHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC----CCc---EEE------HhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHH
Confidence            47899999999999999998 321    122   222      234444433332200000            0111234


Q ss_pred             HHHHHc-cCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          225 KLRKLF-TENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       225 ~l~~~l-~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      .+.+.+ ......+|+|++.+...++.+...+.   ....+|....+.+++.
T Consensus        68 ~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~  116 (179)
T 3lw7_A           68 LCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLG---DSVYIVAVHSPPKIRY  116 (179)
T ss_dssp             HHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHC---SCEEEEEEECCHHHHH
T ss_pred             HHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC---CCcEEEEEECCHHHHH
Confidence            455555 23344578899977666666655443   2345666666666653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.60  E-value=0.013  Score=56.99  Aligned_cols=116  Identities=9%  Similarity=0.038  Sum_probs=62.7

Q ss_pred             hhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc--------------------cccceeEEEEcC---
Q 010799          139 NKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK--------------------EYFQCRAWVPVP---  195 (501)
Q Consensus       139 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~--------------------~~F~~~~wv~vs---  195 (501)
                      +.....|.+.+..+. -.+.+-++|..|+||||+|+.+.+.-.-.                    .|+|.. ++...   
T Consensus         8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~-~~~~~~~~   85 (334)
T 1a5t_A            8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLAPEKGK   85 (334)
T ss_dssp             HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE-EECCCTTC
T ss_pred             HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE-EEeccccC
Confidence            344556666665442 24568899999999999998886421110                    112222 22111   


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          196 EELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       196 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      ....... .+++.+.+....              ..+++-++|+|++..  .+..+.|...+.....++.+|++|.+.
T Consensus        86 ~~~~i~~-ir~l~~~~~~~~--------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~  148 (334)
T 1a5t_A           86 NTLGVDA-VREVTEKLNEHA--------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP  148 (334)
T ss_dssp             SSBCHHH-HHHHHHHTTSCC--------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred             CCCCHHH-HHHHHHHHhhcc--------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence            1111111 122222222110              125677889999864  445566666665545577777777654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.59  E-value=0.0015  Score=55.66  Aligned_cols=25  Identities=16%  Similarity=-0.181  Sum_probs=21.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhccc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECE  180 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~  180 (501)
                      -..+.|+|..|+|||||++.+++..
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999998643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.58  E-value=0.0034  Score=57.76  Aligned_cols=103  Identities=13%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC-
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV-  408 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~-  408 (501)
                      .|..+|..+=..-.++.|.|++|+|||||+..++.......    .-..++|  ++.........+ ..++..+..... 
T Consensus        12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~--i~~~~~~~~~~~-~~~~~~~g~~~~~   88 (243)
T 1n0w_A           12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMY--IDTEGTFRPERL-LAVAERYGLSGSD   88 (243)
T ss_dssp             HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEE--EESSSCCCHHHH-HHHHHHTTCCHHH
T ss_pred             HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEE--EECCCCcCHHHH-HHHHHHcCCCHHH
Confidence            44444433223446999999999999999999877211111    1245677  766554333333 233333332210 


Q ss_pred             -------CCCCCHHH---HHHHHHHhcC-CceEEEEEcCCCC
Q 010799          409 -------DEESSLDD---LESEFTGILY-EKRYLVVLDDVHS  439 (501)
Q Consensus       409 -------~~~~~~~~---~~~~l~~~l~-~~r~LlVlDnv~~  439 (501)
                             ....+..+   ....+.+.+. .+.-+||+|++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~  130 (243)
T 1n0w_A           89 VLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA  130 (243)
T ss_dssp             HHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred             HhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence                   01122333   2333445543 4677999999864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.53  E-value=0.00087  Score=64.62  Aligned_cols=39  Identities=13%  Similarity=-0.036  Sum_probs=28.0

Q ss_pred             hHHHHHHHHhcCCC-CeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          141 EVNKLADFLIRSHS-SLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       141 ~~~~l~~~L~~~~~-~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ....+.+++..... ....+-++|.+|+|||+||+.+++.
T Consensus       136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence            44455566654322 2467889999999999999999863

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.49  E-value=0.0049  Score=62.82  Aligned_cols=48  Identities=10%  Similarity=-0.056  Sum_probs=34.6

Q ss_pred             ccccccchhhHHHHHHHHhc---C-------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR---S-------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~---~-------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.+..++++.+++..   .       -.-.+-+.++|.+|+||||||+.+.+.
T Consensus        15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            45789998887777665431   1       011233779999999999999999863

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.46  E-value=0.0069  Score=60.34  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=54.8

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHHHHHHHHHHhccCCC
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRSVFADILRQLTQDEV  408 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~  408 (501)
                      ..|..+|..+=..-.++.|.|++|+|||||+..++.......    .-..++|  ++.........+ ..++..+.....
T Consensus       165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viy--id~E~~~~~~rl-~~~a~~~gl~~~  241 (400)
T 3lda_A          165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY--IDTEGTFRPVRL-VSIAQRFGLDPD  241 (400)
T ss_dssp             HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEE--EESSSCCCHHHH-HHHHHHTTCCHH
T ss_pred             hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEE--EeCCCccCHHHH-HHHHHHcCCChH
Confidence            344445533323446999999999999999997753212211    1234677  766554443332 334444433211


Q ss_pred             --------CCCCCHHH---HHHHHHHhcC-CceEEEEEcCCCC
Q 010799          409 --------DEESSLDD---LESEFTGILY-EKRYLVVLDDVHS  439 (501)
Q Consensus       409 --------~~~~~~~~---~~~~l~~~l~-~~r~LlVlDnv~~  439 (501)
                              ....+...   ....+...+. .+.-+||+|.+..
T Consensus       242 ~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~  284 (400)
T 3lda_A          242 DALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA  284 (400)
T ss_dssp             HHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred             hHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence                    01222222   2333333332 3577999999653

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.40  E-value=0.0052  Score=60.24  Aligned_cols=122  Identities=16%  Similarity=0.098  Sum_probs=64.0

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccCC---cc-ceeEEEEeCCCCChHHHHHHHHHHhccCCC--------CCC
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKNF---PC-RAWANVYVSQDFDMRSVFADILRQLTQDEV--------DEE  411 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f---~~-~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~--------~~~  411 (501)
                      ..-.++.|+|++|+|||||+..++.........   .+ ++|  ++....+.... +..++..+.....        ...
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~--i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~  205 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW--IDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARA  205 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEE--EESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEE--EeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEec
Confidence            344799999999999999999988732112111   23 477  76644432222 2233332221100        001


Q ss_pred             CC---HHHHHHHHHHhcC------CceEEEEEcCCCChhh---------------HHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799          412 SS---LDDLESEFTGILY------EKRYLVVLDDVHSPGA---------------WYDLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       412 ~~---~~~~~~~l~~~l~------~~r~LlVlDnv~~~~~---------------~~~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                      .+   ...+...+...+.      .+.-+||+|.+-..-+               ...+...|.......++.||+|+..
T Consensus       206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~  285 (349)
T 1pzn_A          206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV  285 (349)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence            11   2234445555553      3678999999876311               2233332222101247889998765


Q ss_pred             h
Q 010799          468 A  468 (501)
Q Consensus       468 ~  468 (501)
                      .
T Consensus       286 ~  286 (349)
T 1pzn_A          286 Q  286 (349)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.33  E-value=0.0037  Score=59.69  Aligned_cols=25  Identities=4%  Similarity=-0.073  Sum_probs=21.3

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+.+.++|++|+|||+||+.+.+.
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457788999999999999999854

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.30  E-value=0.0017  Score=63.71  Aligned_cols=114  Identities=12%  Similarity=0.156  Sum_probs=64.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      .+++|.|+.|+||||+.+.+..  .........+.   .+..+.....  ... ..+..... ...........+...|.
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~---t~ed~~e~~~--~~~-~~~v~q~~-~~~~~~~~~~~La~aL~  194 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL---TIEDPIEFVH--ESK-KCLVNQRE-VHRDTLGFSEALRSALR  194 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE---EEESSCCSCC--CCS-SSEEEEEE-BTTTBSCHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE---EccCcHHhhh--hcc-ccceeeee-eccccCCHHHHHHHHhh
Confidence            5999999999999999998876  22222122222   1111111000  000 00000000 01111234558888888


Q ss_pred             CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          427 EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       427 ~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      ..+=+|++|+..+.+.+..+.....     .|..||+|+........+
T Consensus       195 ~~PdvillDEp~d~e~~~~~~~~~~-----~G~~vl~t~H~~~~~~~~  237 (356)
T 3jvv_A          195 EDPDIILVGEMRDLETIRLALTAAE-----TGHLVFGTLHTTSAAKTI  237 (356)
T ss_dssp             SCCSEEEESCCCSHHHHHHHHHHHH-----TTCEEEEEESCSSHHHHH
T ss_pred             hCcCEEecCCCCCHHHHHHHHHHHh-----cCCEEEEEEccChHHHHH
Confidence            8888999999998766665555422     367799999887765443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.30  E-value=0.012  Score=56.90  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc---------CC-----ccceeEEEEeCCCCChHHHHHHH
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK---------NF-----PCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~---------~f-----~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      .|..+|..+=..-.++.|+|++|+|||+||..++.......         ..     ..++|  ++....++...+. +.
T Consensus        86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~y--i~~e~~~~~~~l~-~~  162 (322)
T 2i1q_A           86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVY--IDTEGTFRPERIM-QM  162 (322)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEE--EESSSCCCHHHHH-HH
T ss_pred             hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEE--EECCCCCCHHHHH-HH
Confidence            34444432223447999999999999999999876321111         11     35677  7776655555544 33


Q ss_pred             HHHhccCCC--------CCCCCHH---HHHHHHHHhcCC--ceEEEEEcCCCC
Q 010799          400 LRQLTQDEV--------DEESSLD---DLESEFTGILYE--KRYLVVLDDVHS  439 (501)
Q Consensus       400 ~~~l~~~~~--------~~~~~~~---~~~~~l~~~l~~--~r~LlVlDnv~~  439 (501)
                      +..+.....        ....+.+   ++...+...+..  +.-+||+|.+..
T Consensus       163 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  215 (322)
T 2i1q_A          163 AEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS  215 (322)
T ss_dssp             HHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred             HHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence            444433210        0122333   244455555543  456999999864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.19  E-value=0.0035  Score=61.81  Aligned_cols=46  Identities=28%  Similarity=0.247  Sum_probs=36.7

Q ss_pred             cceeecchhHHHHHHHhh-------------cCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTL-------------NSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~-------------~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++|.+..++.+...+.             ......+.+.|+|++|+|||++|+.++.
T Consensus        15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            347999999999988772             1112346799999999999999999988

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.16  E-value=0.0043  Score=55.92  Aligned_cols=39  Identities=21%  Similarity=0.231  Sum_probs=29.5

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.+++|.+.+........+++|.|++|+|||||++.+..
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345566666644334557999999999999999998876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.11  E-value=0.033  Score=51.20  Aligned_cols=22  Identities=18%  Similarity=0.082  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|+|||||.+.+..
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.04  E-value=0.0066  Score=54.36  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             cchhHHHHHHHhhcC-CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          328 MENDILKLAKLTLNS-SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       328 R~~~~~~l~~~L~~~-~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |++.++.|.+.+... .....+++|.|++|+||||+++.+..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            556778888777543 24457999999999999999998876

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.95  E-value=0.0038  Score=61.02  Aligned_cols=47  Identities=23%  Similarity=0.270  Sum_probs=34.3

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ...+++|.+.....+...+....  ...+.|+|++|+|||++|+.+++.
T Consensus        22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~   68 (350)
T 1g8p_A           22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL   68 (350)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence            35679999886665544443222  234999999999999999999873

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.91  E-value=0.0013  Score=58.24  Aligned_cols=22  Identities=32%  Similarity=0.335  Sum_probs=19.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++.++|+.|+||||++...+.
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999977665

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.90  E-value=0.05  Score=50.54  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.++.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999876

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.87  E-value=0.035  Score=51.96  Aligned_cols=22  Identities=23%  Similarity=0.590  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||++.++.
T Consensus        38 e~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            5999999999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.87  E-value=0.0077  Score=54.83  Aligned_cols=22  Identities=18%  Similarity=0.083  Sum_probs=20.0

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .++.|+|.+|+|||||++.+..
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5889999999999999998874

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.85  E-value=0.046  Score=51.85  Aligned_cols=27  Identities=30%  Similarity=0.461  Sum_probs=23.1

Q ss_pred             CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          342 SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       342 ~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+..+|+|.|++|+||||||+.+..
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345567999999999999999998776

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.85  E-value=0.013  Score=55.82  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -.+++|.|++|+|||||++.++.
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            36999999999999999999877

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.84  E-value=0.04  Score=51.49  Aligned_cols=121  Identities=18%  Similarity=0.237  Sum_probs=64.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCcccee-E-----------EE--EeCCCC----ChH--------------H
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAW-A-----------NV--YVSQDF----DMR--------------S  394 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w-~-----------~v--~~~~~~----~~~--------------~  394 (501)
                      .+++|.|+.|+|||||.+.++.-  . . ..+.++ +           .+  .+.+.+    ++.              .
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl--~-p-~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~  106 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGL--L-P-YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD  106 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS--S-C-CEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC--C-C-CCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHH
Confidence            58999999999999999998762  2 1 111111 0           01  111111    111              1


Q ss_pred             HHHHHHHHhccC-CCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEe
Q 010799          395 VFADILRQLTQD-EVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILIT  465 (501)
Q Consensus       395 ~~~~i~~~l~~~-~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTt  465 (501)
                      ...+++..+... ...     ..+.-+...-.+...+..++-+++||+--+   ......+...+..  ...  .||++|
T Consensus       107 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~--~~~--tviivt  182 (263)
T 2pjz_A          107 LFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGK--EGILVT  182 (263)
T ss_dssp             HHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHH--SCS--EEEEEE
T ss_pred             HHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHH--hcC--cEEEEE
Confidence            123344444433 111     122233334445555556777999999764   2333444444444  222  799999


Q ss_pred             CChHHHhhcC
Q 010799          466 REAYVARSFS  475 (501)
Q Consensus       466 R~~~~~~~~~  475 (501)
                      .+......+.
T Consensus       183 Hd~~~~~~~~  192 (263)
T 2pjz_A          183 HELDMLNLYK  192 (263)
T ss_dssp             SCGGGGGGCT
T ss_pred             cCHHHHHHhc
Confidence            9876655443

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.83  E-value=0.0027  Score=59.48  Aligned_cols=112  Identities=13%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCC-CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQD-FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI  424 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~  424 (501)
                      -.+++|+|+.|+|||||.+.+..  .....+.+.++  +.-... +-.... .    .+...... ..+.......+.+.
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~--~~g~~i~~~~~~~-~----~~v~q~~~-gl~~~~l~~~la~a   94 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHII--TIEDPIEYVFKHK-K----SIVNQREV-GEDTKSFADALRAA   94 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEE--EEESSCCSCCCCS-S----SEEEEEEB-TTTBSCHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEE--EcCCcceeecCCc-c----eeeeHHHh-CCCHHHHHHHHHHH
Confidence            36999999999999999998876  33222233333  211000 000000 0    00000000 00012234556666


Q ss_pred             cCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh
Q 010799          425 LYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVAR  472 (501)
Q Consensus       425 l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~  472 (501)
                      +...+-+|++|+..+.+....+....     ..|..||+||.......
T Consensus        95 L~~~p~illlDEp~D~~~~~~~l~~~-----~~g~~vl~t~H~~~~~~  137 (261)
T 2eyu_A           95 LREDPDVIFVGEMRDLETVETALRAA-----ETGHLVFGTLHTNTAID  137 (261)
T ss_dssp             HHHCCSEEEESCCCSHHHHHHHHHHH-----HTTCEEEEEECCSSHHH
T ss_pred             HhhCCCEEEeCCCCCHHHHHHHHHHH-----ccCCEEEEEeCcchHHH
Confidence            65567789999997655444433332     23677899988765443

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.81  E-value=0.069  Score=48.71  Aligned_cols=22  Identities=18%  Similarity=0.078  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|.|||||.+.+..
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999974

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.80  E-value=0.0048  Score=53.79  Aligned_cols=22  Identities=23%  Similarity=0.524  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.79  E-value=0.042  Score=53.76  Aligned_cols=63  Identities=16%  Similarity=0.232  Sum_probs=38.4

Q ss_pred             CHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          413 SLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       413 ~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .-+...-.+.+.|..++-+|++|+--+   ......+...+.......|..||++|.+-..+..++
T Consensus       166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a  231 (366)
T 3tui_C          166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC  231 (366)
T ss_dssp             HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence            344555666777778888999999765   222223333332200134788999999987766543

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=95.78  E-value=0.074  Score=51.70  Aligned_cols=128  Identities=9%  Similarity=-0.016  Sum_probs=81.5

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccc-cCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTK-KNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFT  422 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~-~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~  422 (501)
                      .-.++..++|+.|.||++.+..+..  ... ..|.....  +......++                      .++.+.+.
T Consensus        16 ~~~~~yl~~G~e~~~~~~~~~~l~~--~~~~~~~~~~~~--~~~~~~~~~----------------------~~l~~~~~   69 (343)
T 1jr3_D           16 GLRAAYLLLGNDPLLLQESQDAVRQ--VAAAQGFEEHHT--FSIDPNTDW----------------------NAIFSLCQ   69 (343)
T ss_dssp             CCCSEEEEEESCHHHHHHHHHHHHH--HHHHHTCCEEEE--EECCTTCCH----------------------HHHHHHHH
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHH--HHHhCCCCeeEE--EEecCCCCH----------------------HHHHHHhc
Confidence            3457999999999999999988876  322 23322111  222222222                      22332222


Q ss_pred             Hh-cCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCC-------hHHHhhcCCCCcceeCCCCChHHH
Q 010799          423 GI-LYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITRE-------AYVARSFSPSIFLHQLRPLNEEES  491 (501)
Q Consensus       423 ~~-l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~-------~~~~~~~~~~~~~~~l~~L~~~ea  491 (501)
                      .. +.+.+-++|+|+++.   ...++.|...+..  .++++.+|+++..       ..+...+.+...+++..+++.++.
T Consensus        70 ~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l  147 (343)
T 1jr3_D           70 AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQL  147 (343)
T ss_dssp             HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHH
T ss_pred             CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHH
Confidence            11 234567888999865   4667888888887  6677877776643       345555554667899999999888


Q ss_pred             HHHHHHhh
Q 010799          492 GKLFQRRL  499 (501)
Q Consensus       492 ~~Lf~~~~  499 (501)
                      .+.+.+.+
T Consensus       148 ~~~l~~~~  155 (343)
T 1jr3_D          148 PRWVAARA  155 (343)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.78  E-value=0.096  Score=47.76  Aligned_cols=56  Identities=13%  Similarity=0.048  Sum_probs=35.2

Q ss_pred             HHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhc-CCCCCCCCCEEEEEeCChHHHhhc
Q 010799          417 LESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIF-SPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       417 ~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l-~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      ..-.+.+.+-.++-+++||+--+   ......+...+ ..  ...+..||++|.+......+
T Consensus       137 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~--~~~~~tvi~vtH~~~~~~~~  196 (229)
T 2pze_A          137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK--LMANKTRILVTSKMEHLKKA  196 (229)
T ss_dssp             HHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCC--CTTTSEEEEECCCHHHHHHC
T ss_pred             HHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHH--hhCCCEEEEEcCChHHHHhC
Confidence            33445555556677899999765   33344555543 34  33477899999987766543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.77  E-value=0.064  Score=49.22  Aligned_cols=55  Identities=13%  Similarity=0.050  Sum_probs=34.1

Q ss_pred             HHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcC---CCCCCCCCEEEEEeCChHHHhh
Q 010799          417 LESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFS---PQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       417 ~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~---~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      ..-.+.+.+-.++-+++||+--.   ......+...+.   .  ...+..||++|.+......
T Consensus       134 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~~~tviivtH~~~~~~~  194 (237)
T 2cbz_A          134 QRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG--MLKNKTRILVTHSMSYLPQ  194 (237)
T ss_dssp             HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTS--TTTTSEEEEECSCSTTGGG
T ss_pred             HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHh--hcCCCEEEEEecChHHHHh
Confidence            33444555555677899999765   233345555553   3  2347889999988766543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.75  E-value=0.022  Score=54.95  Aligned_cols=88  Identities=18%  Similarity=0.081  Sum_probs=55.3

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhccccccc---------cc-----ceeEEEEcCCCCCHHHHHHHHHHHhcCCCC----
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKE---------YF-----QCRAWVPVPEELERRELVTDILKQVGGSKV----  216 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~---------~F-----~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~----  216 (501)
                      .-.++-|.|.+|+||||||.++..+.....         ..     ...+|++....|+...+.+ +++.++.+..    
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~  175 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD  175 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence            346899999999999999988764322111         11     4678999988888877664 3455554321    


Q ss_pred             -------cCcc---hHHHHHHHHccC--CeEEEEEecCC
Q 010799          217 -------EKQL---DPQKKLRKLFTE--NRYLVVIINAR  243 (501)
Q Consensus       217 -------~~~~---~~~~~l~~~l~~--kr~LlVlDdv~  243 (501)
                             .+..   ++...+...++.  +--+||+|.+-
T Consensus       176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~  214 (322)
T 2i1q_A          176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT  214 (322)
T ss_dssp             TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence                   0101   123445555554  34588899874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.75  E-value=0.019  Score=52.59  Aligned_cols=88  Identities=7%  Similarity=-0.088  Sum_probs=52.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhccccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhcCCCC-----------cCcc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKE----YFQCRAWVPVPEELERRELVTDILKQVGGSKV-----------EKQL  220 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~-----------~~~~  220 (501)
                      -.++.|+|.+|+|||||+..+........    .-...+|+.....+....+. .+++.++....           ....
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~  102 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD  102 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence            46899999999999999998875322211    12467888877766665543 34444443210           0111


Q ss_pred             h---HHHHHHHHcc-CCeEEEEEecCCC
Q 010799          221 D---PQKKLRKLFT-ENRYLVVIINART  244 (501)
Q Consensus       221 ~---~~~~l~~~l~-~kr~LlVlDdv~~  244 (501)
                      +   ....+.+.+. .+--+||||.+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~  130 (243)
T 1n0w_A          103 HQTQLLYQASAMMVESRYALLIVDSATA  130 (243)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence            1   1233555554 4567999999753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.75  E-value=0.0059  Score=54.98  Aligned_cols=37  Identities=11%  Similarity=-0.054  Sum_probs=27.5

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          142 VNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       142 ~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .++|.+.+......-.+|+|+|..|.|||||++.+..
T Consensus         8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A            8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445555543333567999999999999999998874

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.73  E-value=0.032  Score=58.09  Aligned_cols=46  Identities=11%  Similarity=0.001  Sum_probs=34.8

Q ss_pred             cccccchhhHHHHHHHHhc----CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIR----SHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~----~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|.++-...+.+.+.-    ......++.++|.+|+||||||+.+..
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4578888887777655431    122456899999999999999999985

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.71  E-value=0.0089  Score=53.48  Aligned_cols=41  Identities=12%  Similarity=0.104  Sum_probs=32.1

Q ss_pred             chhhHHHHHHHHhcC-CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          138 LNKEVNKLADFLIRS-HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       138 ~~~~~~~l~~~L~~~-~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +++.+++|.+.+... .....+|+|.|..|+|||||++.+..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            455667788777753 23567999999999999999998874

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.67  E-value=0.007  Score=62.12  Aligned_cols=42  Identities=12%  Similarity=0.110  Sum_probs=36.5

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++|+++.++.+...+..+    ..+.|+|++|+|||+||+.+++
T Consensus        22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~   63 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF   63 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGG
T ss_pred             hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHH
Confidence            45899999999988877543    4789999999999999999988

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.66  E-value=0.031  Score=50.21  Aligned_cols=107  Identities=10%  Similarity=0.160  Sum_probs=56.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHH----------HhccCCCCCCCCHHHH
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILR----------QLTQDEVDEESSLDDL  417 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~----------~l~~~~~~~~~~~~~~  417 (501)
                      +|.|.|+||+||+|+|..++.+      |. ...  ++.      -+++++.+.          ......  ..-+.+-.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~--ist------GdllR~~i~~~t~lg~~~~~~~~~G--~lvpd~iv   64 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVH--IST------GDILREAVQKGTPLGKKAKEYMERG--ELVPDDLI   64 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH------HC-CEE--EEH------HHHHHHHHHHTCHHHHHHHHHHHHT--CCCCHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH------HC-CeE--EcH------HHHHHHHHHhcChhhhhHHHHHhcC--CcCCHHHH
Confidence            4778999999999999998872      21 122  332      223332211          111111  12234556


Q ss_pred             HHHHHHhcCCceEEEEEcCCCC-hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHh
Q 010799          418 ESEFTGILYEKRYLVVLDDVHS-PGAWYDLKRIFSPQASPIGSRVILITREAYVAR  472 (501)
Q Consensus       418 ~~~l~~~l~~~r~LlVlDnv~~-~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~  472 (501)
                      ...+.+.+..... +|||++-. ..+.+.|...+.........-|.+....+.+..
T Consensus        65 ~~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~  119 (206)
T 3sr0_A           65 IALIEEVFPKHGN-VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE  119 (206)
T ss_dssp             HHHHHHHCCSSSC-EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHH
T ss_pred             HHHHHHhhccCCc-eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHH
Confidence            7788888876543 68899854 444444444333210122334444544444433

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.65  E-value=0.016  Score=68.30  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC---
Q 010799          334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD---  409 (501)
Q Consensus       334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~---  409 (501)
                      .|..+|. .+=.+.+.+.|+|++|+|||+||.+++.  .....=..+.|  +++.+..+...     +..++.+...   
T Consensus      1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~F--i~~e~~~~~l~-----a~~~G~dl~~l~v 1484 (2050)
T 3cmu_A         1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPIY-----ARKLGVDIDNLLC 1484 (2050)
T ss_dssp             HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEE--ECTTSCCCHHH-----HHHTTCCTTTCEE
T ss_pred             HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEE--EEcccccCHHH-----HHHcCCCchhcee
Confidence            3555553 2224557999999999999999999887  33333234556  66655544433     3344322111   


Q ss_pred             -CCCCHHHHHHHHHHhcC-CceEEEEEcCCC
Q 010799          410 -EESSLDDLESEFTGILY-EKRYLVVLDDVH  438 (501)
Q Consensus       410 -~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~  438 (501)
                       +..+.++....++...+ .+..+||+|.+.
T Consensus      1485 ~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1485 SQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred             ecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence             23345566666666654 356799999985

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.65  E-value=0.053  Score=52.82  Aligned_cols=88  Identities=8%  Similarity=-0.090  Sum_probs=54.9

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhccccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhcCCCC-----------cCc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKE----YFQCRAWVPVPEELERRELVTDILKQVGGSKV-----------EKQ  219 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~-----------~~~  219 (501)
                      .-.++.|.|.+|+||||||..+........    .=...+|++....|+...+.. ++..++.+..           .+.
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~  199 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS  199 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence            457889999999999999988875322211    124678999888888776654 3455543321           011


Q ss_pred             c---hHHHHHHHHcc---CCeEEEEEecCC
Q 010799          220 L---DPQKKLRKLFT---ENRYLVVIINAR  243 (501)
Q Consensus       220 ~---~~~~~l~~~l~---~kr~LlVlDdv~  243 (501)
                      .   ++...+...++   .+--+||+|.+.
T Consensus       200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~  229 (343)
T 1v5w_A          200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM  229 (343)
T ss_dssp             THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred             HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence            1   22334445554   455689999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.038  Score=55.48  Aligned_cols=47  Identities=13%  Similarity=0.049  Sum_probs=35.6

Q ss_pred             cccccchhhHHHHHHHHhc-----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIR-----------SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .++.|.++.+++|.+.+.-           +-...+=|-++|++|+|||+||+.+.+.
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            5678888888887776542           1123456778999999999999999863

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.56  E-value=0.0076  Score=58.67  Aligned_cols=48  Identities=15%  Similarity=-0.063  Sum_probs=36.4

Q ss_pred             ccccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -..++|.+..++.+...+...   ......+.++|.+|+||||||+.+.+.
T Consensus        24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            456889887777776666532   223467899999999999999999853

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.52  E-value=0.053  Score=52.15  Aligned_cols=49  Identities=14%  Similarity=0.150  Sum_probs=31.7

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV  386 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~  386 (501)
                      ..|.+.+ .+=..-.++.|.|.+|+|||++|..++.+.....  ..++|  ++.
T Consensus        56 ~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~--~sl  104 (315)
T 3bh0_A           56 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNL--HSL  104 (315)
T ss_dssp             HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEE--EES
T ss_pred             HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEE--EEC
Confidence            3344444 3223446999999999999999999876322211  45666  664

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.014  Score=57.72  Aligned_cols=47  Identities=9%  Similarity=-0.000  Sum_probs=35.2

Q ss_pred             cccccchhhHHHHHHHHhc-----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIR-----------SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .++.|.++.+++|.+.+.-           +-...+=+-++|++|+|||.||+.+.+.
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence            6788999888887765541           1123455678999999999999999853

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=95.52  E-value=0.074  Score=52.75  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=33.9

Q ss_pred             ceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          324 AVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++|....+.++.+.+..-......|.|+|.+|+|||++|+.+..
T Consensus       138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~  182 (387)
T 1ny5_A          138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK  182 (387)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHH
Confidence            477777888888777644233334569999999999999998765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.51  E-value=0.0058  Score=53.97  Aligned_cols=22  Identities=32%  Similarity=0.708  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |.|+|+||+|+|||||++.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999999876

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.51  E-value=0.0089  Score=55.64  Aligned_cols=48  Identities=8%  Similarity=-0.046  Sum_probs=34.5

Q ss_pred             ccccccchhhHHHHHHHHh---cC-------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLI---RS-------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~---~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..++++.+++.   ..       ....+-+.|+|.+|+||||||+.+.+.
T Consensus        11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            4678999888877665543   11       011234789999999999999999863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.49  E-value=0.072  Score=51.84  Aligned_cols=59  Identities=15%  Similarity=0.156  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCCh------hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHSP------GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      -+...-.+.+.|-.++-+|+||+--+.      ..+..++..+..   ..|..+|++|.+...+..+.
T Consensus       131 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~---~~g~tii~vTHd~~~~~~~a  195 (348)
T 3d31_A          131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK---KNKLTVLHITHDQTEARIMA  195 (348)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH---HTTCEEEEEESCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHHhC
Confidence            344455666777777889999996541      112222222221   23678999999977665543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.48  E-value=0.036  Score=55.63  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++.++|++|+||||++..++.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999988775

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.47  E-value=0.077  Score=51.77  Aligned_cols=82  Identities=12%  Similarity=0.018  Sum_probs=50.8

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-------CcchHHHHHH
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE-------KQLDPQKKLR  227 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~~l~  227 (501)
                      .-.++.|.|.+|+|||||+..+......  .=..++|+.....++..     .+++++.....       +..+....+.
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~  132 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD  132 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence            3479999999999999999988743221  11245788887777754     45555543221       1122334444


Q ss_pred             HHcc-CCeEEEEEecCC
Q 010799          228 KLFT-ENRYLVVIINAR  243 (501)
Q Consensus       228 ~~l~-~kr~LlVlDdv~  243 (501)
                      ..++ .+--++|+|.+-
T Consensus       133 ~l~~~~~~dlvVIDSi~  149 (356)
T 3hr8_A          133 ELVRSGVVDLIVVDSVA  149 (356)
T ss_dssp             HHHHTSCCSEEEEECTT
T ss_pred             HHhhhcCCCeEEehHhh
Confidence            4443 344588999874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.46  E-value=0.025  Score=54.66  Aligned_cols=88  Identities=10%  Similarity=0.004  Sum_probs=55.1

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccc----cceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-----------Ccc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEY----FQCRAWVPVPEELERRELVTDILKQVGGSKVE-----------KQL  220 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-----------~~~  220 (501)
                      -.++.|+|.+|+||||||.++.........    =...+|++....++...+.. +++.++.+...           ...
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~  185 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD  185 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence            468899999999999999888743221111    23678999888888777654 44555443210           001


Q ss_pred             ---hHHHHHHHHcc--CCeEEEEEecCCC
Q 010799          221 ---DPQKKLRKLFT--ENRYLVVIINART  244 (501)
Q Consensus       221 ---~~~~~l~~~l~--~kr~LlVlDdv~~  244 (501)
                         ++...+...++  .+--+||+|.+..
T Consensus       186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  214 (324)
T 2z43_A          186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS  214 (324)
T ss_dssp             HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence               12345555554  3556888998753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.45  E-value=0.0071  Score=52.27  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|.|++|+||||+|+.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999877

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.44  E-value=0.0084  Score=52.20  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.41  E-value=0.012  Score=53.75  Aligned_cols=58  Identities=12%  Similarity=0.060  Sum_probs=36.3

Q ss_pred             cccccc---hhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc
Q 010799          133 TGILDL---NKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV  194 (501)
Q Consensus       133 ~~~vg~---~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v  194 (501)
                      .+++|.   +...+.+..++...  ....+.|+|.+|+||||||+.+.+...  .......|+..
T Consensus        28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~   88 (242)
T 3bos_A           28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPL   88 (242)
T ss_dssp             TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEG
T ss_pred             hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEH
Confidence            456763   24445555555433  456788999999999999999985322  22223455554

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.38  E-value=0.011  Score=52.24  Aligned_cols=23  Identities=22%  Similarity=0.533  Sum_probs=21.3

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++|.|++|+|||||++.+..
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999987

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.36  E-value=0.049  Score=52.74  Aligned_cols=108  Identities=11%  Similarity=0.044  Sum_probs=60.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEE
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYL  236 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~L  236 (501)
                      .+++|+|..|.|||||++.+..-..   .-...+.+.-......... .   +.+..-. .........|...|..+.-+
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~~-ggg~~~r~~la~aL~~~p~i  243 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLFF-GGNITSADCLKSCLRMRPDR  243 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEEC-BTTBCHHHHHHHHTTSCCSE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEEe-CCChhHHHHHHHHhhhCCCE
Confidence            4789999999999999999874321   1123333332211110000 0   0000000 01122355677777777778


Q ss_pred             EEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          237 VVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       237 lVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      |+||++.+.+.++.+... ..+  +.-+|+||...++..
T Consensus       244 lildE~~~~e~~~~l~~~-~~g--~~tvi~t~H~~~~~~  279 (330)
T 2pt7_A          244 IILGELRSSEAYDFYNVL-CSG--HKGTLTTLHAGSSEE  279 (330)
T ss_dssp             EEECCCCSTHHHHHHHHH-HTT--CCCEEEEEECSSHHH
T ss_pred             EEEcCCChHHHHHHHHHH-hcC--CCEEEEEEcccHHHH
Confidence            999999987767655443 221  223788888777544

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.35  E-value=0.07  Score=52.05  Aligned_cols=82  Identities=13%  Similarity=0.022  Sum_probs=49.9

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-------CcchHHHHHH
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE-------KQLDPQKKLR  227 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~~l~  227 (501)
                      .-.++.|.|.+|+||||||.++.....  ..=...+|++....++..     .++.++.....       +..+....+.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~  132 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD  132 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence            346899999999999999988864322  111356888888777653     24455533211       1112233444


Q ss_pred             HHccC-CeEEEEEecCC
Q 010799          228 KLFTE-NRYLVVIINAR  243 (501)
Q Consensus       228 ~~l~~-kr~LlVlDdv~  243 (501)
                      ...+. +--+||+|.+-
T Consensus       133 ~l~~~~~~~lIVIDsl~  149 (349)
T 2zr9_A          133 MLVRSGALDIIVIDSVA  149 (349)
T ss_dssp             HHHTTTCCSEEEEECGG
T ss_pred             HHHhcCCCCEEEEcChH
Confidence            44433 34589999974

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.34  E-value=0.0085  Score=51.77  Aligned_cols=20  Identities=35%  Similarity=0.620  Sum_probs=18.7

Q ss_pred             eEEEEEecCCCChHHHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTI  366 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~  366 (501)
                      .+|+|.|++|+||||+|+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.34  E-value=0.0068  Score=57.93  Aligned_cols=47  Identities=13%  Similarity=-0.010  Sum_probs=36.6

Q ss_pred             cccccchhhHHHHHHHHhc------------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIR------------SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~------------~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..++|.+..++.|...+..            .......+-++|.+|+|||+||+.+.+.
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999998887764            0112345779999999999999999853

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.34  E-value=0.03  Score=54.98  Aligned_cols=81  Identities=10%  Similarity=-0.020  Sum_probs=50.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCC-------cCcchHHHHHHH
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKV-------EKQLDPQKKLRK  228 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~-------~~~~~~~~~l~~  228 (501)
                      -.++-|.|.+|+||||||..+.....  ..=..++|+.....++..     .++.++.+..       .+..+....+..
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~  146 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL  146 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence            45788899999999999988764322  112367899998877754     2445544321       111223445555


Q ss_pred             HccCC-eEEEEEecCC
Q 010799          229 LFTEN-RYLVVIINAR  243 (501)
Q Consensus       229 ~l~~k-r~LlVlDdv~  243 (501)
                      .++.. --+||+|.+-
T Consensus       147 l~~~~~~~lVVIDsl~  162 (366)
T 1xp8_A          147 LVRSGAIDVVVVDSVA  162 (366)
T ss_dssp             HHTTTCCSEEEEECTT
T ss_pred             HHhcCCCCEEEEeChH
Confidence            55433 3489999973

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.31  E-value=0.19  Score=48.54  Aligned_cols=25  Identities=32%  Similarity=0.579  Sum_probs=22.0

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+++|.|+.|+||||+++.++.
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999988876

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.31  E-value=0.0036  Score=61.45  Aligned_cols=111  Identities=14%  Similarity=0.101  Sum_probs=65.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHH--HHHHHHHHHhcCCCCcCcchHHHHHHHHccCC
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERR--ELVTDILKQVGGSKVEKQLDPQKKLRKLFTEN  233 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~--~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~k  233 (501)
                      -.+++|+|..|.|||||.+.+..-..  .....++ +++.++....  .. ...+.+..  ...........|...|...
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~--~~~~~~~~~~~La~aL~~~  196 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHI-LTIEDPIEFVHESK-KCLVNQRE--VHRDTLGFSEALRSALRED  196 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEE-EEEESSCCSCCCCS-SSEEEEEE--BTTTBSCHHHHHHHHTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEE-EEccCcHHhhhhcc-ccceeeee--eccccCCHHHHHHHHhhhC
Confidence            35899999999999999998864211  1111111 2222221110  00 00000000  0011223466888999888


Q ss_pred             eEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          234 RYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       234 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      .=+|++|++.+.+.++.+....   ..|..||+||...+.+.
T Consensus       197 PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~  235 (356)
T 3jvv_A          197 PDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK  235 (356)
T ss_dssp             CSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred             cCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence            8899999999888777655442   34677999999988775

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.27  E-value=0.013  Score=54.11  Aligned_cols=41  Identities=20%  Similarity=0.095  Sum_probs=29.2

Q ss_pred             cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          328 MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       328 R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+.++.............|+|.|++|+||||+|+.+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           11 TIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             HHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            33445555444433334567899999999999999999876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.27  E-value=0.028  Score=53.80  Aligned_cols=24  Identities=33%  Similarity=0.549  Sum_probs=21.4

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|+|++|+||||++..++.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            347999999999999999998877

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.26  E-value=0.014  Score=52.03  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=28.9

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+..|..++.. -++...+.|+|++|+|||++|..+++
T Consensus        43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence            446666666643 34445899999999999999988887

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.23  E-value=0.0094  Score=52.29  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.|.|.|++|+||||+|+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999887

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.23  E-value=0.09  Score=51.32  Aligned_cols=59  Identities=14%  Similarity=0.206  Sum_probs=36.4

Q ss_pred             CHHHHHHHHHHhcCCceEEEEEcCCCCh------hhH-HHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          413 SLDDLESEFTGILYEKRYLVVLDDVHSP------GAW-YDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       413 ~~~~~~~~l~~~l~~~r~LlVlDnv~~~------~~~-~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .-+...-.+.+.|-.++-+|+||+--+.      ..+ ..+.....    ..|..+|++|.+...+..++
T Consensus       141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~----~~g~tvi~vTHd~~ea~~~a  206 (359)
T 3fvq_A          141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR----ANGKSAVFVSHDREEALQYA  206 (359)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHHHC
Confidence            3344555666667777889999996541      112 22333222    24788999999987766554

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.22  E-value=0.066  Score=52.25  Aligned_cols=62  Identities=10%  Similarity=0.173  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      -+...-.+.+.|-.++-+|+||+--+.   ..-..+...+.......|..+|++|.+...+..++
T Consensus       149 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a  213 (355)
T 1z47_A          149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA  213 (355)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC
Confidence            344455666667777889999996541   11122222222100023678999999987666544

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.20  E-value=0.015  Score=55.26  Aligned_cols=26  Identities=15%  Similarity=0.069  Sum_probs=22.5

Q ss_pred             CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          153 HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       153 ~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .....+|+|+|..|+||||||+.+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999999998864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.19  E-value=0.01  Score=52.94  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|++|+||||+++.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            36899999999999999999987

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.17  E-value=0.011  Score=51.94  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++++|.|++|+|||||++.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999999876

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.17  E-value=0.077  Score=50.49  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++++.|++|+||||++..++.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999988775

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.023  Score=57.16  Aligned_cols=47  Identities=11%  Similarity=-0.001  Sum_probs=35.6

Q ss_pred             cccccchhhHHHHHHHHhc-----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIR-----------SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .++.|.++.+++|.+.+.-           +-...+=|-++|++|+|||+||+.+.+.
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            5688999888888775431           1123556778999999999999999853

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.12  E-value=0.014  Score=51.50  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=21.4

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+|.|.|++|+||||+|+.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999877

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.11  E-value=0.013  Score=52.23  Aligned_cols=25  Identities=36%  Similarity=0.566  Sum_probs=22.2

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+++|.|++|+|||||++.+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3447999999999999999999887

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=95.11  E-value=0.044  Score=53.96  Aligned_cols=46  Identities=20%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++|....+.++...+..-......+.|+|.+|+||+++|+.+..
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~  174 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHR  174 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHH
Confidence            3588888888887776643223334678999999999999998765

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.09  E-value=0.016  Score=50.35  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=21.4

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|.|++|+||||+++.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.07  E-value=0.0084  Score=56.15  Aligned_cols=48  Identities=6%  Similarity=-0.117  Sum_probs=35.1

Q ss_pred             ccccccchhhHHHHHHHHhc----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR----------SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.+..++.|.+.+..          .....+-+.++|.+|+|||+||+.+.+.
T Consensus        10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence            46799999888887776541          0011223678999999999999999864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.05  E-value=0.0098  Score=51.51  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|.|++|+||||+++.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999887

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.05  E-value=0.0085  Score=51.75  Aligned_cols=22  Identities=14%  Similarity=-0.147  Sum_probs=19.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|.|.|++|+||||+++.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.04  E-value=0.062  Score=51.14  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++++|++|+||||++..++.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346999999999999999988876

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.03  E-value=0.032  Score=55.04  Aligned_cols=111  Identities=14%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccce-eEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRA-WANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGI  424 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~-w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~  424 (501)
                      ..+++|+|+.|+||||+++.+..  .+.....+.+ +  +.  .+....  ...-. .+-.... -..+.......+...
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~--~e--~~~e~~--~~~~~-~~v~Q~~-~g~~~~~~~~~l~~~  205 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIIT--IE--DPIEYV--FKHKK-SIVNQRE-VGEDTKSFADALRAA  205 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEE--EE--SSCCSC--CCCSS-SEEEEEE-BTTTBSCSHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEE--ec--ccHhhh--hccCc-eEEEeee-cCCCHHHHHHHHHHH
Confidence            36899999999999999998876  3222212222 2  11  110000  00000 0000000 000111234567777


Q ss_pred             cCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHH
Q 010799          425 LYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVA  471 (501)
Q Consensus       425 l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~  471 (501)
                      +...+-+|++|++.+.+.+..+....     ..|..+|.|+......
T Consensus       206 L~~~pd~illdE~~d~e~~~~~l~~~-----~~g~~vi~t~H~~~~~  247 (372)
T 2ewv_A          206 LREDPDVIFVGEMRDLETVETALRAA-----ETGHLVFGTLHTNTAI  247 (372)
T ss_dssp             TTSCCSEEEESCCCSHHHHHHHHHHH-----TTTCEEEECCCCCSHH
T ss_pred             hhhCcCEEEECCCCCHHHHHHHHHHH-----hcCCEEEEEECcchHH
Confidence            77777789999998765554444332     2366788888765543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.01  E-value=0.01  Score=52.31  Aligned_cols=23  Identities=13%  Similarity=-0.188  Sum_probs=20.8

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|+|++|+|||||++.+..
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999999974

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.00  E-value=0.045  Score=56.11  Aligned_cols=43  Identities=5%  Similarity=-0.014  Sum_probs=36.1

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..++|.+..++.+...+..+    .-+-++|.+|+|||+||+.+.+.
T Consensus        22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~   64 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA   64 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred             hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence            46899999998888877754    35788999999999999999864

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.00  E-value=0.0018  Score=57.28  Aligned_cols=21  Identities=19%  Similarity=-0.073  Sum_probs=17.4

Q ss_pred             eEEEEEeeCChhhHHHHhhhh
Q 010799          157 FTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .++.|+|..|+||||++..+.
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            477899999999999985554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.99  E-value=0.064  Score=53.82  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=21.3

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++.+|.++|++|+||||++..++.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHH
Confidence            468999999999999999888775

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=94.95  E-value=0.015  Score=52.33  Aligned_cols=24  Identities=25%  Similarity=0.679  Sum_probs=21.6

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|.|++|+|||||++.+..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHh
Confidence            346999999999999999999887

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.93  E-value=0.12  Score=49.42  Aligned_cols=81  Identities=9%  Similarity=-0.018  Sum_probs=50.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccc--cceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc------Ccc-hH-HHHH
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEY--FQCRAWVPVPEELERRELVTDILKQVGGSKVE------KQL-DP-QKKL  226 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~--F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~------~~~-~~-~~~l  226 (501)
                      .++-|.|.+|+|||||+.++....  ...  =...+||.....++..     .+++++.+...      ... +. ...+
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~--~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~  101 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSY--MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV  101 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH--HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH--HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence            378999999999999987776322  222  2357899888888764     36777765332      111 12 1222


Q ss_pred             HHH--c-cCCeEEEEEecCCC
Q 010799          227 RKL--F-TENRYLVVIINART  244 (501)
Q Consensus       227 ~~~--l-~~kr~LlVlDdv~~  244 (501)
                      ...  + +++--|||+|-|-.
T Consensus       102 ~~l~~i~~~~~~lvVIDSI~a  122 (333)
T 3io5_A          102 NQLDAIERGEKVVVFIDSLGN  122 (333)
T ss_dssp             HHHHTCCTTCCEEEEEECSTT
T ss_pred             HHHHHhhccCceEEEEecccc
Confidence            222  3 34567999999753

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.93  E-value=0.015  Score=57.24  Aligned_cols=46  Identities=13%  Similarity=-0.062  Sum_probs=35.3

Q ss_pred             ccccchhhHHHHHHHHh-------------cCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          134 GILDLNKEVNKLADFLI-------------RSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       134 ~~vg~~~~~~~l~~~L~-------------~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .++|.+..++.+...+.             ........+.++|.+|+|||++|+.+.+.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            47899888888888773             11113456889999999999999999853

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.93  E-value=0.19  Score=47.57  Aligned_cols=55  Identities=13%  Similarity=0.056  Sum_probs=34.5

Q ss_pred             HHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhc-CCCCCCCCCEEEEEeCChHHHhhc
Q 010799          418 ESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIF-SPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       418 ~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l-~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      .-.+.+.+..++-+++||+--.   ......+...+ ..  ...+..||++|.+......+
T Consensus       167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~--~~~~~tviivtHd~~~~~~~  225 (290)
T 2bbs_A          167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK--LMANKTRILVTSKMEHLKKA  225 (290)
T ss_dssp             HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCC--CTTTSEEEEECCCHHHHHHS
T ss_pred             HHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHH--hhCCCEEEEEecCHHHHHcC
Confidence            3344455556677899999765   33344555543 33  33478899999987766543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.93  E-value=0.015  Score=51.22  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..|+|.|++|+||||+|+.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999887

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=94.92  E-value=0.034  Score=56.52  Aligned_cols=48  Identities=6%  Similarity=-0.015  Sum_probs=35.6

Q ss_pred             ccccccchhhHHHHHHHH---hcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFL---IRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L---~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.++.++.+..++   .......+-+-++|++|+|||+||+.+.+.
T Consensus        36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~   86 (456)
T 2c9o_A           36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE   86 (456)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence            368999998887655444   333223345788999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.90  E-value=0.085  Score=51.55  Aligned_cols=62  Identities=10%  Similarity=0.130  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      -+...-.+.+.|-.++-+|+||+--+.   ..-..+...+.......|..+|++|.+...+..++
T Consensus       137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a  201 (359)
T 2yyz_A          137 GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMA  201 (359)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence            344455566667777889999996541   11122222222100023678999999987665543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.86  E-value=0.097  Score=51.42  Aligned_cols=63  Identities=8%  Similarity=0.080  Sum_probs=35.3

Q ss_pred             CHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          413 SLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       413 ~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .-+...-.+.+.|-.++-+|+||+--+   ...-..+...+.......|..+|++|.+...+..++
T Consensus       144 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a  209 (372)
T 1v43_A          144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG  209 (372)
T ss_dssp             SSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            334445556666667778999999654   111122222222100023678999999987665543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.84  E-value=0.014  Score=52.10  Aligned_cols=23  Identities=39%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|++|+||||+|+.+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999877

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.83  E-value=0.047  Score=54.28  Aligned_cols=57  Identities=7%  Similarity=-0.134  Sum_probs=37.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhccccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhcC
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKE----YFQCRAWVPVPEELERRELVTDILKQVGG  213 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~~i~~~~~~  213 (501)
                      -.++.|+|.+|+|||||+..+.-......    .-...+|+.....+....+. .+++.++.
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl  238 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL  238 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence            46899999999999999996642221111    22457888887777666543 35565554

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.82  E-value=0.077  Score=51.34  Aligned_cols=109  Identities=14%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY  426 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  426 (501)
                      ..++|.|+.|+|||||++.+..  .+... .+.+.  +.-.........    ...+..-    ....+.....+...+.
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g--~~~~~-~g~i~--i~~~~e~~~~~~----~~~i~~~----~ggg~~~r~~la~aL~  238 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIME--FIPKE-ERIIS--IEDTEEIVFKHH----KNYTQLF----FGGNITSADCLKSCLR  238 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGG--GSCTT-SCEEE--EESSCCCCCSSC----SSEEEEE----CBTTBCHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC--CCcCC-CcEEE--ECCeeccccccc----hhEEEEE----eCCChhHHHHHHHHhh
Confidence            4899999999999999999887  33222 33333  321111110000    0000000    0012334566777777


Q ss_pred             CceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          427 EKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       427 ~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      .++-+|++|+..+.+.++.+ ..+..   + +..+|+||........
T Consensus       239 ~~p~ilildE~~~~e~~~~l-~~~~~---g-~~tvi~t~H~~~~~~~  280 (330)
T 2pt7_A          239 MRPDRIILGELRSSEAYDFY-NVLCS---G-HKGTLTTLHAGSSEEA  280 (330)
T ss_dssp             SCCSEEEECCCCSTHHHHHH-HHHHT---T-CCCEEEEEECSSHHHH
T ss_pred             hCCCEEEEcCCChHHHHHHH-HHHhc---C-CCEEEEEEcccHHHHH
Confidence            78889999999875544433 33323   1 3346777776554433

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.81  E-value=0.015  Score=51.02  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|.|++|+||||+++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.81  E-value=0.018  Score=53.37  Aligned_cols=47  Identities=9%  Similarity=-0.069  Sum_probs=33.1

Q ss_pred             ccccccchhhHHHHHHHHhc--C---------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR--S---------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~--~---------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.+..+.++.++...  .         ..... +.|+|.+|+|||||++.+.+.
T Consensus        15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence            35788988776666554431  1         11123 889999999999999999864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.81  E-value=0.063  Score=52.84  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.++.
T Consensus        30 e~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEEcCCCchHHHHHHHHHc
Confidence            5999999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.80  E-value=0.045  Score=51.11  Aligned_cols=111  Identities=15%  Similarity=0.101  Sum_probs=58.9

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEE-cCCCCCHHHHHHHHHH--HhcCCCCcCcchHHHHHHHHcc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVP-VPEELERRELVTDILK--QVGGSKVEKQLDPQKKLRKLFT  231 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~-vs~~~~~~~l~~~i~~--~~~~~~~~~~~~~~~~l~~~l~  231 (501)
                      .-.+++|+|..|+|||||.+.+..-..  ..+...+++. ..-.+-.... ..++.  .++.    ........+...|.
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----~~~~l~~~la~aL~   96 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DTKSFADALRAALR   96 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TBSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC----CHHHHHHHHHHHHh
Confidence            346899999999999999998864211  1112233221 1000000000 00000  0000    11234556666665


Q ss_pred             CCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          232 ENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       232 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      .+.=+|+||+..+.+....+....   ..|.-|++||.+.+++.
T Consensus        97 ~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~  137 (261)
T 2eyu_A           97 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID  137 (261)
T ss_dssp             HCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred             hCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence            566688899998655544333222   34777999999887654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.80  E-value=0.017  Score=58.07  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=35.4

Q ss_pred             cceeecchhHHHHHHHhhcC------------CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLNS------------SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~------------~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.++..+.|...+...            ....+.+.++|++|+|||++|+.++.
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~   72 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence            46799888888886665321            11346799999999999999999987

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.79  E-value=0.13  Score=51.58  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|+++|.+|+||||++..++.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999988776

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.79  E-value=0.033  Score=54.49  Aligned_cols=82  Identities=10%  Similarity=-0.028  Sum_probs=49.3

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-------CcchHHHHHH
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE-------KQLDPQKKLR  227 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~~l~  227 (501)
                      .-.++.|.|.+|+||||||.++.....  ..=...+|+.....++...     +..++.....       ...+....++
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~  134 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD  134 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence            346889999999999999988764322  1113578999888777542     4445433211       1112233343


Q ss_pred             HHcc-CCeEEEEEecCC
Q 010799          228 KLFT-ENRYLVVIINAR  243 (501)
Q Consensus       228 ~~l~-~kr~LlVlDdv~  243 (501)
                      ...+ .+--+||+|.+-
T Consensus       135 ~l~~~~~~~lVVIDsl~  151 (356)
T 1u94_A          135 ALARSGAVDVIVVDSVA  151 (356)
T ss_dssp             HHHHHTCCSEEEEECGG
T ss_pred             HHHhccCCCEEEEcCHH
Confidence            3332 334489999963

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.78  E-value=0.017  Score=51.55  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|.|++|+|||||++.+..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346999999999999999999877

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=94.78  E-value=0.023  Score=54.70  Aligned_cols=43  Identities=16%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             eecchhHHHHHHHhhcC--CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          326 VSMENDILKLAKLTLNS--SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       326 vGR~~~~~~l~~~L~~~--~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +|-...+..+...+...  ...+.+++|.|++|+||||+++.+..
T Consensus        70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44444455444444332  34556999999999999999998866

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.77  E-value=0.011  Score=52.63  Aligned_cols=23  Identities=17%  Similarity=-0.068  Sum_probs=20.8

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|+|++|+||||+++.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999974

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.76  E-value=0.014  Score=50.92  Aligned_cols=23  Identities=35%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.|.|.|++|+||||+++.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999999999876

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.76  E-value=0.018  Score=50.79  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|++|+||||+|+.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999877

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.72  E-value=0.019  Score=51.17  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||++.+..
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHh
Confidence            5899999999999999999876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.71  E-value=0.021  Score=50.83  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.1

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+..+|+|.|++|+||||+|+.+..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999887

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=94.70  E-value=0.012  Score=51.60  Aligned_cols=22  Identities=9%  Similarity=-0.121  Sum_probs=20.3

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++++|+|+.|+|||||++.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.70  E-value=0.019  Score=53.38  Aligned_cols=25  Identities=36%  Similarity=0.656  Sum_probs=21.8

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+..+|+|.|++|+||||+|+.+..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4557999999999999999999877

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.68  E-value=0.019  Score=50.64  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|++|+||||+|+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999876

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.67  E-value=0.012  Score=51.17  Aligned_cols=22  Identities=5%  Similarity=-0.253  Sum_probs=19.9

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.67  E-value=0.015  Score=52.05  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++++|.|++|+|||||++.+..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999877

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=94.67  E-value=0.021  Score=53.86  Aligned_cols=47  Identities=11%  Similarity=-0.080  Sum_probs=32.6

Q ss_pred             ccccccchhhHHHHHHHHhc---C---------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR---S---------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~---~---------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.++.|.++.+++|.+.+..   .         ..... +.++|.+|+||||||+.+.+.
T Consensus         9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A            9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence            35678888888877765421   0         11223 899999999999999999863

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.66  E-value=0.11  Score=50.92  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.++.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCchHHHHHHHHhc
Confidence            6999999999999999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.66  E-value=0.02  Score=51.32  Aligned_cols=24  Identities=42%  Similarity=0.715  Sum_probs=21.5

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|.|+.|+|||||++.+..
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            446999999999999999999877

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.64  E-value=0.02  Score=50.28  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=21.5

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....|+|+|++|+||||+++.+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999887

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.64  E-value=0.015  Score=50.51  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.0

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|+|..|+|||||++..+.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc
Confidence            36899999999999999997653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.64  E-value=0.022  Score=50.62  Aligned_cols=25  Identities=24%  Similarity=0.530  Sum_probs=22.5

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+..+|+|.|+.|+||||+++.+..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999887

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.63  E-value=0.025  Score=54.94  Aligned_cols=43  Identities=16%  Similarity=0.120  Sum_probs=31.6

Q ss_pred             ccchhhHHHHHHHHhcC--CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          136 LDLNKEVNKLADFLIRS--HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       136 vg~~~~~~~l~~~L~~~--~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      |+.+.-.+++++.|...  ......|.++|++|+||||+++.+..
T Consensus         2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            45556667777776532  23566789999999999999998874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.61  E-value=0.02  Score=51.02  Aligned_cols=22  Identities=41%  Similarity=0.762  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|++|+||||+++.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999876

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.61  E-value=0.024  Score=50.75  Aligned_cols=25  Identities=40%  Similarity=0.740  Sum_probs=22.1

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+|+|.|++|+||||+++.+..
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3447999999999999999999877

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.60  E-value=0.091  Score=53.13  Aligned_cols=47  Identities=21%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccC-CccceeEEEEe
Q 010799          335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKN-FPCRAWANVYV  386 (501)
Q Consensus       335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~~~~w~~v~~  386 (501)
                      |...+ .+=..-.++.|.|.+|+|||++|..++.+  .... -..++|  ++.
T Consensus       190 LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~--~sl  237 (444)
T 2q6t_A          190 LDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGI--YSL  237 (444)
T ss_dssp             HHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEE--EES
T ss_pred             hhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEE--EEC
Confidence            44444 33334469999999999999999998873  3221 234566  554

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.60  E-value=0.039  Score=53.32  Aligned_cols=42  Identities=14%  Similarity=0.022  Sum_probs=35.5

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++|.+..+..+...+...    .-+-++|.+|+|||+||+.+.+
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred             cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence            56899999998888888764    2477899999999999999985

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.57  E-value=0.017  Score=50.08  Aligned_cols=24  Identities=13%  Similarity=0.022  Sum_probs=21.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .-.+|+|+|++|+|||||++.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.56  E-value=0.019  Score=53.35  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|++|+||||||+.++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999877

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.55  E-value=0.011  Score=51.19  Aligned_cols=22  Identities=18%  Similarity=-0.037  Sum_probs=19.9

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|+|+|++|+|||||++.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.54  E-value=0.015  Score=50.55  Aligned_cols=22  Identities=18%  Similarity=-0.008  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999974

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.53  E-value=0.11  Score=50.42  Aligned_cols=101  Identities=13%  Similarity=0.144  Sum_probs=57.5

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHh-------
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQL-------  403 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l-------  403 (501)
                      -+..|.+.+. +=..-.++.|.|.+|+|||++|..++.+  ....=..++|  ++.  ..+...+...++...       
T Consensus        32 G~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~--fSl--Ems~~ql~~Rlls~~~~v~~~~  104 (338)
T 4a1f_A           32 GFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAV--FSL--EMSAEQLALRALSDLTSINMHD  104 (338)
T ss_dssp             SCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEE--EES--SSCHHHHHHHHHHHHHCCCHHH
T ss_pred             CChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEE--EeC--CCCHHHHHHHHHHHhhCCCHHH
Confidence            3444544442 2233469999999999999999998873  2222234556  554  233334433332211       


Q ss_pred             --------------------------ccCCCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCC
Q 010799          404 --------------------------TQDEVDEESSLDDLESEFTGILYE--KRYLVVLDDVHS  439 (501)
Q Consensus       404 --------------------------~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~  439 (501)
                                                ..... ...+..++...++++...  ..-+||+|.+..
T Consensus       105 l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~-~~~si~~i~~~ir~l~~~~gg~~lIVIDyLql  167 (338)
T 4a1f_A          105 LESGRLDDDQWENLAKCFDHLSQKKLFFYDK-SYVRIEQIRLQLRKLKSQHKELGIAFIDYLQL  167 (338)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHHHHSCEEEECC-TTCCHHHHHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCC-CCCcHHHHHHHHHHHHHhcCCCCEEEEechHH
Confidence                                      00011 233567777777766543  467899997653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.52  E-value=0.08  Score=55.59  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|+|+.|+|||||++.+..
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5999999999999999999865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.49  E-value=0.022  Score=50.12  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|++|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.48  E-value=0.022  Score=50.66  Aligned_cols=24  Identities=17%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++++|.|++|+|||||++.+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            347999999999999999999876

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.48  E-value=0.064  Score=63.30  Aligned_cols=100  Identities=16%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             hHHHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC
Q 010799          331 DILKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD  409 (501)
Q Consensus       331 ~~~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~  409 (501)
                      -...|..+|. .+=..-+++.|+|++|+|||+||.+++.  .....-..++|  ++.....+..  .   +..++.+...
T Consensus       367 G~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vly--is~E~s~~~~--~---a~~lGvd~~~  437 (2050)
T 3cmu_A          367 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPI--Y---ARKLGVDIDN  437 (2050)
T ss_dssp             SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEE--ECTTSCCCHH--H---HHHTTCCTTT
T ss_pred             CCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEE--EEcCCCHHHH--H---HHHcCCCHHH
Confidence            3445555553 2223447999999999999999999887  33333235667  6665554432  1   4444433211


Q ss_pred             ----CCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 010799          410 ----EESSLDDLESEFTGILY-EKRYLVVLDDVHS  439 (501)
Q Consensus       410 ----~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~  439 (501)
                          +..+.+++...+..... ...-+||+|.+..
T Consensus       438 L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a  472 (2050)
T 3cmu_A          438 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA  472 (2050)
T ss_dssp             CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred             eEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence                34566777777765553 3456899999754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.47  E-value=0.017  Score=50.84  Aligned_cols=22  Identities=27%  Similarity=0.045  Sum_probs=20.0

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999974

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.46  E-value=0.028  Score=49.32  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|++|+||||+|+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999877

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=94.46  E-value=0.014  Score=51.63  Aligned_cols=115  Identities=11%  Similarity=0.014  Sum_probs=58.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCC---CCCHHHHHHHHHHH---hcCC--CCcCc--------
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPE---ELERRELVTDILKQ---VGGS--KVEKQ--------  219 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~---~~~~~~l~~~i~~~---~~~~--~~~~~--------  219 (501)
                      ...|-|++-.|.||||+|--..- .-....+.+ .++...+   ......++..+--.   ++..  .....        
T Consensus        28 ~g~i~v~tG~GkGKTTaA~Glal-RA~g~G~rV-~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a  105 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAA-RAVGHGKNV-GVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC  105 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHH-HHHHTTCCE-EEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH-HHHHCCCeE-EEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence            35667777788999999865542 111222322 2332222   23444444443100   0000  00000        


Q ss_pred             chHHHHHHHHccCCeE-EEEEecCCCh-----hHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799          220 LDPQKKLRKLFTENRY-LVVIINARTP-----DIWDILKYLFPNSSNGSRVILSFQEAD  272 (501)
Q Consensus       220 ~~~~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtr~~~  272 (501)
                      ......+++.+.+.+| |||||++-..     ...+++...+.......-||+|+|+..
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap  164 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH  164 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence            1124566777766666 9999997332     112344444444444667999999874

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.45  E-value=0.015  Score=50.80  Aligned_cols=23  Identities=35%  Similarity=0.453  Sum_probs=16.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.42  E-value=0.017  Score=50.12  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=19.6

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|.|.|++|+||||+|+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999887

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.42  E-value=0.023  Score=50.34  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|.|++|+||||+|+.+..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.42  E-value=0.024  Score=50.67  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..|+|.|++|+||||+|+.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999999987

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.41  E-value=0.091  Score=51.29  Aligned_cols=89  Identities=11%  Similarity=0.058  Sum_probs=51.8

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhccccccccc---c-eeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-----------C-
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYF---Q-CRAWVPVPEELERRELVTDILKQVGGSKVE-----------K-  218 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F---~-~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-----------~-  218 (501)
                      .-.++.|+|.+|+|||||+..+..........   . ..+|+.....+....+ ..+.+.++.....           . 
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~  208 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS  208 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence            45799999999999999999887432111111   2 3488887666554443 3344444322100           0 


Q ss_pred             --cchHHHHHHHHcc------CCeEEEEEecCCC
Q 010799          219 --QLDPQKKLRKLFT------ENRYLVVIINART  244 (501)
Q Consensus       219 --~~~~~~~l~~~l~------~kr~LlVlDdv~~  244 (501)
                        .......+...+.      .+--+||||.+..
T Consensus       209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta  242 (349)
T 1pzn_A          209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS  242 (349)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence              0112334444453      3566999999865

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.41  E-value=0.024  Score=52.98  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999887

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.41  E-value=0.06  Score=53.59  Aligned_cols=47  Identities=9%  Similarity=-0.019  Sum_probs=35.5

Q ss_pred             cccccchhhHHHHHHHHhc---C--------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIR---S--------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~---~--------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .++.|.++.+++|.+.+.-   .        -...+=|-++|++|+|||.||+.+.+.
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence            5678888888887776531   1        123456788999999999999999853

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.40  E-value=0.064  Score=62.46  Aligned_cols=98  Identities=16%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             HHHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC--
Q 010799          333 LKLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD--  409 (501)
Q Consensus       333 ~~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~--  409 (501)
                      ..|..+|. .+=..-+++.|+|++|+|||+||.+++.  .....-..++|  ++.....+..  .   +..++.+...  
T Consensus       369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vly--is~E~s~~~~--~---a~~lGvd~~~L~  439 (1706)
T 3cmw_A          369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPI--Y---ARKLGVDIDNLL  439 (1706)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--ECTTSCCCHH--H---HHHTTCCGGGCE
T ss_pred             HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEE--EEccCchHHH--H---HHHcCCCHHHeE
Confidence            44444443 2223447999999999999999999887  33333345677  7765555432  1   4444433211  


Q ss_pred             --CCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 010799          410 --EESSLDDLESEFTGILY-EKRYLVVLDDVHS  439 (501)
Q Consensus       410 --~~~~~~~~~~~l~~~l~-~~r~LlVlDnv~~  439 (501)
                        ...+.+++...+..... ...-+||+|.+..
T Consensus       440 i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~a  472 (1706)
T 3cmw_A          440 CSQPDTGEQALEICDALARSGAVDVIVVDSVAA  472 (1706)
T ss_dssp             EECCSSHHHHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred             EcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence              34456666666665553 3456999999865

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.40  E-value=0.016  Score=50.69  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999877

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.40  E-value=0.026  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...|+|.|++|+||||+|+.+..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999877

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.37  E-value=0.025  Score=53.68  Aligned_cols=25  Identities=36%  Similarity=0.587  Sum_probs=22.1

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....++.|.|++|+||||+|+.+..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999877

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.37  E-value=0.017  Score=51.52  Aligned_cols=24  Identities=21%  Similarity=0.026  Sum_probs=21.4

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .-.+|.|+|++|+|||||++.+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.36  E-value=0.024  Score=49.61  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..|+|.|++|+||||+++.+..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.35  E-value=0.023  Score=60.00  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=38.0

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|.+..++.+...+..+    ..+.|+|++|+||||||+.++.
T Consensus        39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence            4578999999998888887543    5899999999999999999987

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.35  E-value=0.021  Score=49.19  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+|+|.|++|+||||+|+.+..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999887

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.35  E-value=0.016  Score=50.00  Aligned_cols=24  Identities=8%  Similarity=-0.033  Sum_probs=20.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++.+|.|.|+.|+||||+++.+..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999874

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.34  E-value=0.022  Score=50.55  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.|++|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999887

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.31  E-value=0.024  Score=49.64  Aligned_cols=70  Identities=11%  Similarity=0.126  Sum_probs=41.9

Q ss_pred             cCCceEEEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCEEEEEeC---ChHHHhhcCC--CCcceeCCCCChHHHHHH
Q 010799          425 LYEKRYLVVLDDVHS-----PGAWYDLKRIFSPQASPIGSRVILITR---EAYVARSFSP--SIFLHQLRPLNEEESGKL  494 (501)
Q Consensus       425 l~~~r~LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~iIiTtR---~~~~~~~~~~--~~~~~~l~~L~~~ea~~L  494 (501)
                      +..++-+++||++..     ......+...+..    .+..+|++|.   +......+..  ...++.+...+.++...-
T Consensus        96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~  171 (178)
T 1ye8_A           96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILED  171 (178)
T ss_dssp             HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHH
T ss_pred             cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHH
Confidence            556677999999532     2233445555544    3555777773   4444444432  357899998888776654


Q ss_pred             HHHh
Q 010799          495 FQRR  498 (501)
Q Consensus       495 f~~~  498 (501)
                      +...
T Consensus       172 l~~~  175 (178)
T 1ye8_A          172 ILSL  175 (178)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.31  E-value=0.026  Score=53.19  Aligned_cols=47  Identities=9%  Similarity=-0.069  Sum_probs=33.8

Q ss_pred             ccccccchhhHHHHHHHHhc--C---------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIR--S---------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~--~---------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.+..+.++.++...  .         ..... +.|+|.+|+|||||++.+.+.
T Consensus        39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence            46789988777766654431  1         11123 889999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.30  E-value=0.028  Score=50.29  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=21.6

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+|+|.|++|+||||+++.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999887

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.28  E-value=0.029  Score=49.25  Aligned_cols=24  Identities=29%  Similarity=0.585  Sum_probs=21.6

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+|.|.|++|+||||+++.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            347899999999999999999887

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.28  E-value=0.028  Score=50.89  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.7

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.++|.|.|++|+||+|+|..++.
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            5668999999999999999999887

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.27  E-value=0.018  Score=51.38  Aligned_cols=22  Identities=18%  Similarity=-0.049  Sum_probs=19.9

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|+|.|+.|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=94.26  E-value=0.023  Score=51.50  Aligned_cols=22  Identities=36%  Similarity=0.652  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|.|++|+||||+++.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998876

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.26  E-value=0.02  Score=51.08  Aligned_cols=22  Identities=27%  Similarity=0.694  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.++|.|++|+|||||++.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999998865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.26  E-value=0.017  Score=50.65  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=20.3

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+.|.++|++|+||||+|+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999873

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.24  E-value=0.25  Score=49.87  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=22.2

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ..-.++.|.|.+|+|||++|..++.+
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~  220 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKN  220 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHH
Confidence            33469999999999999999998873

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.23  E-value=0.025  Score=50.39  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|.|+.|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.23  E-value=0.019  Score=50.56  Aligned_cols=22  Identities=14%  Similarity=-0.073  Sum_probs=19.9

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|++|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999973

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.23  E-value=0.026  Score=51.04  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...|+|.|++|+||||+|+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999887

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.22  E-value=0.029  Score=50.32  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=21.2

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|++|+||||+|+.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999887

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.21  E-value=0.15  Score=52.35  Aligned_cols=90  Identities=11%  Similarity=0.065  Sum_probs=51.8

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcccccccC-CccceeEEEEeCCCCChHHHHHHHHHHhcc-C---------------
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYESSYTKKN-FPCRAWANVYVSQDFDMRSVFADILRQLTQ-D---------------  406 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~-f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~-~---------------  406 (501)
                      ..-.++.|.|.+|+|||+||..++.+  .... =..++|  ++..  .+...+...++..... +               
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~--~s~E--~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~  313 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGL--AMLE--ESVEETAEDLIGLHNRVRLRQSDSLKREIIENG  313 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEE--EESS--SCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTS
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEE--Eecc--CCHHHHHHHHHHHHcCCChhhccccccCCCCHH
Confidence            34469999999999999999998873  3322 234566  5543  2334444433221110 0               


Q ss_pred             ------------C------CCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          407 ------------E------VDEESSLDDLESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       407 ------------~------~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                                  .      .....+.+++...+.+.... ..-+||+|.+..
T Consensus       314 ~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~  365 (503)
T 1q57_A          314 KFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI  365 (503)
T ss_dssp             HHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred             HHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh
Confidence                        0      00114566777777666543 345899999764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.21  E-value=0.12  Score=51.61  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=22.3

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+|.|.|++|+||||+|+.++.
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4457999999999999999999887

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.21  E-value=0.014  Score=51.50  Aligned_cols=22  Identities=23%  Similarity=0.176  Sum_probs=19.2

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +.|.|+|++|+|||||++.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999873

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.21  E-value=0.26  Score=51.74  Aligned_cols=127  Identities=13%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHccccc-ccC--Cc-cceeEEEEeCC----CCChHHHH--------------HHHHHHhc
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYT-KKN--FP-CRAWANVYVSQ----DFDMRSVF--------------ADILRQLT  404 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~--f~-~~~w~~v~~~~----~~~~~~~~--------------~~i~~~l~  404 (501)
                      .+++|.|+.|+|||||.+.++.-... ...  +. .+.+  +.-..    ..++.+.+              .+++..++
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~--v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~  460 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY--KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG  460 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEE--ECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEE--EecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence            59999999999999999998873211 111  11 1222  22211    11222222              22233333


Q ss_pred             cCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          405 QDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       405 ~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .....     ..+.-+...-.+...|...+-+|+||+--+   ......+...+.......|..||++|.+...+..+.
T Consensus       461 l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~a  539 (607)
T 3bk7_A          461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS  539 (607)
T ss_dssp             CTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred             CchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            32111     122234445566677777888999999654   222222333222200123678999999987766554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.20  E-value=0.19  Score=50.32  Aligned_cols=24  Identities=25%  Similarity=0.145  Sum_probs=20.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..+|.++|.+|+||||++..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHH
Confidence            468999999999999999877753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.20  E-value=0.027  Score=50.27  Aligned_cols=22  Identities=27%  Similarity=0.697  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|.|++|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.19  E-value=0.018  Score=51.35  Aligned_cols=22  Identities=9%  Similarity=-0.047  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|+|||||++.+..
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHh
Confidence            5899999999999999999874

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.19  E-value=0.021  Score=49.33  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999877

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.18  E-value=0.084  Score=51.54  Aligned_cols=123  Identities=15%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCC-----CCC-------------------------------
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQ-----DFD-------------------------------  391 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~-----~~~-------------------------------  391 (501)
                      +++|.|+.|+|||||.+.++.  -....-..+.++...+..     ...                               
T Consensus        33 ~~~llGpnGsGKSTLLr~iaG--l~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  110 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAG--LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM  110 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT--SSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhC--CCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc


Q ss_pred             ------hHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCC
Q 010799          392 ------MRSVFADILRQLTQDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQA  454 (501)
Q Consensus       392 ------~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~  454 (501)
                            ...-..++++.++.....     +.+.-+...-.+.+.|-.++-+|+||+--+      ...+..+...+..  
T Consensus       111 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--  188 (353)
T 1oxx_K          111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS--  188 (353)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--


Q ss_pred             CCCCCEEEEEeCChHHHhhcC
Q 010799          455 SPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~~~~~~~  475 (501)
                       ..|..+|++|.+...+..++
T Consensus       189 -~~g~tvi~vTHd~~~~~~~a  208 (353)
T 1oxx_K          189 -RLGVTLLVVSHDPADIFAIA  208 (353)
T ss_dssp             -HHCCEEEEEESCHHHHHHHC
T ss_pred             -hcCCEEEEEeCCHHHHHHhC

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.18  E-value=0.29  Score=51.44  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.+..
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~G  125 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAG  125 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            5999999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.17  E-value=0.027  Score=51.94  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++|.|++|+|||||++.++.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999999985

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.15  E-value=0.024  Score=50.39  Aligned_cols=24  Identities=17%  Similarity=-0.038  Sum_probs=21.9

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..+|+|.|+.|+||||+++.+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999999974

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.14  E-value=0.018  Score=51.28  Aligned_cols=24  Identities=25%  Similarity=0.127  Sum_probs=21.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .-.+|+|+|+.|+|||||++.+..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999974

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.13  E-value=0.031  Score=51.55  Aligned_cols=40  Identities=13%  Similarity=-0.090  Sum_probs=28.2

Q ss_pred             hhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          139 NKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       139 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+.++.+.+........+|.|.|++|+||||+|+.+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3344455554443333567899999999999999999873

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.11  E-value=0.05  Score=53.28  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=27.9

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            3344444544456678999999999999999988865

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.10  E-value=0.1  Score=53.02  Aligned_cols=23  Identities=39%  Similarity=0.654  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +.+.|.|++|+|||+++..+...
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~   68 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEA   68 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHH
Confidence            48999999999999999988773

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=94.08  E-value=0.052  Score=52.12  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=20.8

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++.++|+|+|-|||||||.+.-+..
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~   70 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSA   70 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHH
Confidence            4568999999999999998876655

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.08  E-value=0.024  Score=49.83  Aligned_cols=23  Identities=17%  Similarity=-0.188  Sum_probs=20.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|++|+||||+++.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.08  E-value=0.028  Score=48.28  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999877

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.06  E-value=0.033  Score=48.52  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999877

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.02  E-value=0.03  Score=50.96  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...|+|.|++|+||||+|+.+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999887

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.01  E-value=0.042  Score=55.05  Aligned_cols=47  Identities=6%  Similarity=-0.029  Sum_probs=36.1

Q ss_pred             cccccchhhHHHHHHHHhc-----------CCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIR-----------SHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .++.|.++.+++|.+.+.-           +-...+=|-++|++|+|||+||+.+.+.
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            5788999988888776642           1123455788999999999999999853

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.01  E-value=0.021  Score=49.99  Aligned_cols=22  Identities=27%  Similarity=0.090  Sum_probs=19.4

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .++|+|..|+|||||++.+...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5799999999999999988753

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=93.99  E-value=0.025  Score=50.74  Aligned_cols=24  Identities=21%  Similarity=0.011  Sum_probs=21.2

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|+|+|..|+|||||++.+..
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999874

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=93.99  E-value=0.085  Score=52.76  Aligned_cols=24  Identities=29%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...++++.|++|+||||++..++.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988776

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.99  E-value=0.1  Score=52.63  Aligned_cols=89  Identities=12%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCC-ccceeEEEEeCCCC-ChHHHHHHHHHHhccCCC-----CCCCCHH--H-
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNF-PCRAWANVYVSQDF-DMRSVFADILRQLTQDEV-----DEESSLD--D-  416 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~--~-  416 (501)
                      ..++|+|.+|+|||+|+..+..  .....+ ...++  +.+.... ...+++.++...-.....     ...++..  . 
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~--~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~  227 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVF--AGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMR  227 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEE--EEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHh--hhhhccCcEEEE--eeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHH
Confidence            3689999999999999999887  333222 22344  5554443 344444444332100000     0011111  1 


Q ss_pred             ---HHHHHHHhc---CCceEEEEEcCCCC
Q 010799          417 ---LESEFTGIL---YEKRYLVVLDDVHS  439 (501)
Q Consensus       417 ---~~~~l~~~l---~~~r~LlVlDnv~~  439 (501)
                         ..-.+.+++   .++.+||++||+..
T Consensus       228 ~~~~~ltiAEyFrd~~G~~VLl~~D~itR  256 (473)
T 1sky_E          228 VALTGLTMAEYFRDEQGQDGLLFIDNIFR  256 (473)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence               111334443   46799999999854

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.99  E-value=0.024  Score=50.70  Aligned_cols=24  Identities=25%  Similarity=0.116  Sum_probs=21.4

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|+|+|.+|+|||||++.+..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.99  E-value=0.2  Score=51.92  Aligned_cols=59  Identities=10%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +...-.+...|..++-+|+||+--+   ......+...+..  ...|..||++|.+......++
T Consensus       143 e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~--l~~g~tii~vsHdl~~~~~~~  204 (538)
T 3ozx_A          143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE--LLKNKYVIVVDHDLIVLDYLT  204 (538)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH--HCTTSEEEEECSCHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH--HhCCCEEEEEEeChHHHHhhC
Confidence            3444455566667777999999754   2222233333332  122778999999877666554

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.97  E-value=0.03  Score=49.27  Aligned_cols=21  Identities=52%  Similarity=0.831  Sum_probs=19.6

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999887

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.96  E-value=0.041  Score=49.74  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=21.8

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      +...|.|+|.+|+|||||+..+...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5688999999999999999888754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.95  E-value=0.045  Score=50.11  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=26.7

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV  386 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~  386 (501)
                      .-.++.|.|++|+||||||..++.  .....-..++|  ++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~--~~~   59 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIY--VAL   59 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEE--EES
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEE--EEc
Confidence            336999999999999999988766  22222234566  554

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=93.92  E-value=0.023  Score=54.59  Aligned_cols=23  Identities=13%  Similarity=-0.074  Sum_probs=20.5

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      +.+||+|.|-|||||||.+-.+.
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA   69 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLS   69 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCccCHHHHHHHHH
Confidence            57999999999999999887665

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.92  E-value=0.16  Score=52.62  Aligned_cols=127  Identities=15%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHccccc-ccC--Cc-cceeEEEEeCC----CCChHHHHHHH--------------HHHhc
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYT-KKN--FP-CRAWANVYVSQ----DFDMRSVFADI--------------LRQLT  404 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~-~~~--f~-~~~w~~v~~~~----~~~~~~~~~~i--------------~~~l~  404 (501)
                      .+++|.|+.|+|||||++.++.-... ...  +. .+.+  +.-..    ..++.+.+...              +..+.
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~--v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~  390 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY--KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG  390 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEE--ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEE--EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence            59999999999999999999873211 111  11 1222  32211    11333222211              11111


Q ss_pred             cCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          405 QDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       405 ~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .....     ..+.-+...-.+...+..++-+|+||+--+   ......+...+.......|..||++|.+...+..++
T Consensus       391 l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~  469 (538)
T 1yqt_A          391 IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS  469 (538)
T ss_dssp             CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred             ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            11000     122234445566777777888999999755   222222333322200023678999999987766544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=93.92  E-value=0.017  Score=51.59  Aligned_cols=23  Identities=26%  Similarity=0.021  Sum_probs=20.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|++|+||||||+.+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.91  E-value=0.044  Score=50.83  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....++.|.|++|+||||+|+.+..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999877

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.90  E-value=0.21  Score=50.57  Aligned_cols=26  Identities=35%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHcc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ..-.++.|.|.+|+||||||..++..
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~  226 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQN  226 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            33469999999999999999998873

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.89  E-value=0.036  Score=49.27  Aligned_cols=23  Identities=39%  Similarity=0.424  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...|+|.|++|+||||+++.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35899999999999999999887

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=93.88  E-value=0.022  Score=50.56  Aligned_cols=21  Identities=14%  Similarity=0.079  Sum_probs=19.3

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .|+|.|+.|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999974

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=93.86  E-value=0.18  Score=50.63  Aligned_cols=38  Identities=16%  Similarity=0.052  Sum_probs=27.4

Q ss_pred             hHHHHHHHHhcC-------CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          141 EVNKLADFLIRS-------HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       141 ~~~~l~~~L~~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.++|.++|...       ..+.++|.++|.+|+||||++..+..
T Consensus        78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A           78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345566666532       12468999999999999999877763

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.85  E-value=0.057  Score=48.81  Aligned_cols=38  Identities=29%  Similarity=0.299  Sum_probs=27.6

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +....+...+..  .....|+|.|.+|+|||||+..++..
T Consensus        24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            334444444432  35688999999999999999998873

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=93.82  E-value=0.023  Score=49.88  Aligned_cols=22  Identities=23%  Similarity=0.140  Sum_probs=20.0

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|.|.|++|+||||+++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=93.82  E-value=0.022  Score=50.72  Aligned_cols=23  Identities=17%  Similarity=0.043  Sum_probs=20.5

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+|+|+|+.|+|||||++.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999874

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.82  E-value=0.047  Score=53.50  Aligned_cols=37  Identities=14%  Similarity=0.083  Sum_probs=28.4

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          142 VNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       142 ~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4455556654445678999999999999999988753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=93.82  E-value=0.033  Score=50.15  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.82  E-value=0.032  Score=50.58  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...|+|.|++|+||||+++.+..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999887

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.81  E-value=0.024  Score=51.49  Aligned_cols=22  Identities=18%  Similarity=-0.053  Sum_probs=20.0

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|+|+|+.|+||||+++.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999873

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.81  E-value=0.034  Score=54.07  Aligned_cols=46  Identities=11%  Similarity=-0.047  Sum_probs=32.6

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.+..+..+...+....  ..-+-++|.+|+|||+||+.+.+.
T Consensus        23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~   68 (350)
T 1g8p_A           23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL   68 (350)
T ss_dssp             GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence            3568999886665444443221  223789999999999999999863

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=93.80  E-value=0.027  Score=55.23  Aligned_cols=103  Identities=11%  Similarity=0.019  Sum_probs=55.5

Q ss_pred             HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc-cccceeEEEEcCCCCCHHHHHHHHHHHhcC-----CCCc
Q 010799          144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK-EYFQCRAWVPVPEELERRELVTDILKQVGG-----SKVE  217 (501)
Q Consensus       144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~-~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~-----~~~~  217 (501)
                      +.++.+..-. .-..++|+|.+|+|||||++.+.+.-... ..+.|. ++.+.+....-.   ++.+.+..     ..++
T Consensus       163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~Ev~---~~~~~~~~~vV~atade  237 (422)
T 3ice_A          163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEEVT---EMQRLVKGEVVASTFDE  237 (422)
T ss_dssp             HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHHHH---HHHTTCSSEEEEECTTS
T ss_pred             eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHHHH---HHHHHhCeEEEEeCCCC
Confidence            4666666432 23478999999999999999886432111 123443 577776543221   22233311     0011


Q ss_pred             Cc-ch---------HHHHHHHHccCCeEEEEEecCCC-hhHHHHHhh
Q 010799          218 KQ-LD---------PQKKLRKLFTENRYLVVIINART-PDIWDILKY  253 (501)
Q Consensus       218 ~~-~~---------~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~l~~  253 (501)
                      +. ..         .++.+++  +++..||++||+.. ...+.++..
T Consensus       238 p~~~r~~~a~~alt~AEyfrd--~G~dVLil~DslTR~A~A~revs~  282 (422)
T 3ice_A          238 PASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSITRLARAYNTVVP  282 (422)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH--TSCEEEEEEECHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHh--cCCCEEEEEeCchHHHHHHHHHHH
Confidence            10 00         1223332  58999999999854 233444443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.77  E-value=0.037  Score=47.85  Aligned_cols=24  Identities=29%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++.|.|++|+|||||+..+..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999887

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=93.77  E-value=0.038  Score=49.51  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||++.+..
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            6999999999999999998875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.77  E-value=0.026  Score=50.46  Aligned_cols=22  Identities=18%  Similarity=0.036  Sum_probs=20.0

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|+|.|+.|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=93.75  E-value=0.14  Score=51.51  Aligned_cols=99  Identities=17%  Similarity=0.090  Sum_probs=60.9

Q ss_pred             HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCC-HHHHHHHHHHHhcCC------CC
Q 010799          144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE-RRELVTDILKQVGGS------KV  216 (501)
Q Consensus       144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~~i~~~~~~~------~~  216 (501)
                      +.++.|..-. +=.-++|.|.+|+|||+|++.+.++. .+.+-+.++++-+.+... ..++++++...-...      ..
T Consensus       142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt  219 (482)
T 2ck3_D          142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV  219 (482)
T ss_dssp             HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred             EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence            4677776422 12457999999999999998887532 123346778888887754 466777776542221      00


Q ss_pred             ----cCcch----------HHHHHHHHc---cCCeEEEEEecCCC
Q 010799          217 ----EKQLD----------PQKKLRKLF---TENRYLVVIINART  244 (501)
Q Consensus       217 ----~~~~~----------~~~~l~~~l---~~kr~LlVlDdv~~  244 (501)
                          .+.++          ..-.+.+++   +++..||++||+..
T Consensus       220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR  264 (482)
T 2ck3_D          220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR  264 (482)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence                01111          112233343   47899999999853

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=93.74  E-value=0.027  Score=52.25  Aligned_cols=24  Identities=21%  Similarity=0.041  Sum_probs=21.5

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..+|+|.|+.|+||||+|+.+..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999998864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.74  E-value=0.038  Score=50.10  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -.+++|.|++|+|||||.+.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            36999999999999999999876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.73  E-value=0.042  Score=50.68  Aligned_cols=24  Identities=42%  Similarity=0.757  Sum_probs=21.3

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|.|+.|+|||||++.+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346999999999999999998876

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=93.73  E-value=0.031  Score=50.81  Aligned_cols=109  Identities=12%  Similarity=0.046  Sum_probs=57.2

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc----CcchHHHHHHHHcc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE----KQLDPQKKLRKLFT  231 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~----~~~~~~~~l~~~l~  231 (501)
                      -.++.|.|..|.||||++..+.+.... ....+ +.+....  +.. -...++++++.....    ...++.+.+.+.+.
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kV-li~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~   86 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRLEY-ADVKY-LVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF   86 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCE-EEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEE-EEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence            468889999999999988766543221 11222 2222221  111 112344444432211    11234445555554


Q ss_pred             CCeE-EEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799          232 ENRY-LVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEAD  272 (501)
Q Consensus       232 ~kr~-LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~~  272 (501)
                      +.++ +||+|.+..  .+..+.+.. +.+  .|-.||+|-+..+
T Consensus        87 ~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d  127 (223)
T 2b8t_A           87 NDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN  127 (223)
T ss_dssp             CTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred             CCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence            5555 999999753  333344433 222  2678999988544

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=93.73  E-value=0.02  Score=51.00  Aligned_cols=22  Identities=18%  Similarity=0.163  Sum_probs=19.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++++|+|+.|+|||||++.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999999873

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.72  E-value=0.041  Score=48.75  Aligned_cols=25  Identities=24%  Similarity=0.579  Sum_probs=22.0

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+|+|+|+.|+||||+++.+..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999999877

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.72  E-value=0.043  Score=49.43  Aligned_cols=39  Identities=18%  Similarity=0.160  Sum_probs=28.1

Q ss_pred             hhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          139 NKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       139 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ++..+.+...+...  +..+|.|+|.+|+|||||+..+...
T Consensus        15 ~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           15 KRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             HHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            34444555544332  5789999999999999999888753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.72  E-value=0.024  Score=50.86  Aligned_cols=23  Identities=13%  Similarity=-0.036  Sum_probs=20.8

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+|+|+|+.|+|||||++.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999999974

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.71  E-value=0.035  Score=49.97  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.70  E-value=0.021  Score=49.64  Aligned_cols=22  Identities=18%  Similarity=0.013  Sum_probs=19.6

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++|.|.|++|+||||+|+.+..
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.70  E-value=0.02  Score=51.16  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=20.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|+|++|+|||||++.+..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999874

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=93.69  E-value=0.041  Score=53.18  Aligned_cols=24  Identities=29%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..+++|+|..|+|||||++.+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999988864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.68  E-value=0.028  Score=49.36  Aligned_cols=24  Identities=13%  Similarity=-0.051  Sum_probs=21.0

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|.|.|++|+||||+++.+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.67  E-value=0.031  Score=49.73  Aligned_cols=24  Identities=21%  Similarity=0.050  Sum_probs=21.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|.|.|++|+||||+++.+.+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.67  E-value=0.33  Score=50.98  Aligned_cols=127  Identities=13%  Similarity=0.113  Sum_probs=66.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccc-c-CCc--cceeEEEEeCC----CCChH--------------HHHHHHHHHhc
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTK-K-NFP--CRAWANVYVSQ----DFDMR--------------SVFADILRQLT  404 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~-~-~f~--~~~w~~v~~~~----~~~~~--------------~~~~~i~~~l~  404 (501)
                      .+++|.|+.|+|||||++.++.-.... . ...  .+.+  +....    ..++.              ....+++..+.
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~--~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~  456 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSM--KPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR  456 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEE--ECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEE--ecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence            579999999999999999987632111 0 000  0111  11100    00111              12233344443


Q ss_pred             cCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          405 QDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       405 ~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      .....     ..+.-+...-.+...|..++-+|+||+--..   .....+...+.......|..||++|.+...+..+.
T Consensus       457 l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a  535 (608)
T 3j16_B          457 IDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA  535 (608)
T ss_dssp             STTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred             ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            32211     2233445556677778888889999996541   11222222222100023778999999987776654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=93.67  E-value=0.032  Score=50.52  Aligned_cols=22  Identities=27%  Similarity=0.685  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||++.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999999876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.65  E-value=0.042  Score=52.72  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=22.2

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+++|.|+.|+|||||++.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4457999999999999999998876

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=93.64  E-value=0.043  Score=54.13  Aligned_cols=46  Identities=13%  Similarity=0.007  Sum_probs=33.3

Q ss_pred             cccccchhhHHHHHHHHh----c------------------------CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLI----R------------------------SHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~----~------------------------~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++|.+..++.|...+.    .                        .......+-++|.+|+|||+||+.+.+
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence            357788877777776662    0                        011234578999999999999999985

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.64  E-value=0.028  Score=52.23  Aligned_cols=22  Identities=9%  Similarity=-0.171  Sum_probs=19.9

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++|.|.|++|+||||||+.+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999999874

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=93.64  E-value=0.021  Score=49.79  Aligned_cols=23  Identities=22%  Similarity=-0.057  Sum_probs=20.3

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .++|.|.|++|+||||+++.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45788999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.63  E-value=0.025  Score=49.14  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=20.0

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .++++|+|..|+|||||++.+..
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998864

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=93.62  E-value=0.14  Score=51.77  Aligned_cols=99  Identities=17%  Similarity=0.081  Sum_probs=61.7

Q ss_pred             HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCC-HHHHHHHHHHHhcCC-------C
Q 010799          144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE-RRELVTDILKQVGGS-------K  215 (501)
Q Consensus       144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~~i~~~~~~~-------~  215 (501)
                      +.++.|..-. +=.-++|.|-+|+|||+|++.+.++. .+.+-+.++++.+.+... ..+++.++...-...       .
T Consensus       154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r  231 (498)
T 1fx0_B          154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK  231 (498)
T ss_dssp             TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred             eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence            3566666432 12357999999999999998887532 123457889999988764 466777776542111       0


Q ss_pred             Cc----Ccch----------HHHHHHHHc---cCCeEEEEEecCCC
Q 010799          216 VE----KQLD----------PQKKLRKLF---TENRYLVVIINART  244 (501)
Q Consensus       216 ~~----~~~~----------~~~~l~~~l---~~kr~LlVlDdv~~  244 (501)
                      ..    ..++          ..-.+.+++   +++..||++||+..
T Consensus       232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR  277 (498)
T 1fx0_B          232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR  277 (498)
T ss_dssp             EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence            00    1110          123344555   35899999999853

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.62  E-value=0.047  Score=51.60  Aligned_cols=24  Identities=21%  Similarity=0.574  Sum_probs=21.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +..+|+|.|++|+||||+|+.+..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998863

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.60  E-value=0.034  Score=49.29  Aligned_cols=25  Identities=16%  Similarity=-0.024  Sum_probs=22.3

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+..+|+|.|+.|+||||+++.+..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999998874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.60  E-value=0.055  Score=51.28  Aligned_cols=24  Identities=21%  Similarity=-0.002  Sum_probs=21.3

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|.|.|++|+||||+|+.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999999974

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.59  E-value=0.047  Score=54.75  Aligned_cols=47  Identities=11%  Similarity=0.053  Sum_probs=36.1

Q ss_pred             cccccchhhHHHHHHHHhc----C-------CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLIR----S-------HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~----~-------~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .++.|.++.+++|.+.+.-    .       -...+=|-++|++|+|||+||+.+.+.
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            6788999998888776431    1       123556788999999999999999853

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.56  E-value=0.035  Score=50.12  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..|+|.|++|+||||+|+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999887

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.53  E-value=0.12  Score=52.01  Aligned_cols=98  Identities=15%  Similarity=0.024  Sum_probs=54.5

Q ss_pred             HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCC-HHHHHHHHHHHhc--------CCC
Q 010799          145 LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE-RRELVTDILKQVG--------GSK  215 (501)
Q Consensus       145 l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~~i~~~~~--------~~~  215 (501)
                      .++.|..-. +-..++|+|.+|+|||||++.+.++.... +-+.++++.+.+... ..++..++...-.        ...
T Consensus       141 ~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~  218 (473)
T 1sky_E          141 VVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQM  218 (473)
T ss_dssp             HHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECT
T ss_pred             HHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcC
Confidence            455565321 11358899999999999999887543322 224567777777653 3455554543200        000


Q ss_pred             CcC-cchH-----HHHHHHHc---cCCeEEEEEecCCC
Q 010799          216 VEK-QLDP-----QKKLRKLF---TENRYLVVIINART  244 (501)
Q Consensus       216 ~~~-~~~~-----~~~l~~~l---~~kr~LlVlDdv~~  244 (501)
                      .++ ....     .-.+.+++   ++++.||++||+..
T Consensus       219 ~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR  256 (473)
T 1sky_E          219 NEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFR  256 (473)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence            110 0000     11233333   58999999999853

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.53  E-value=0.05  Score=52.32  Aligned_cols=24  Identities=8%  Similarity=-0.035  Sum_probs=21.4

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhh
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ....+|+|.|..|+|||||++.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            356799999999999999999886

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.52  E-value=0.031  Score=49.28  Aligned_cols=23  Identities=30%  Similarity=0.042  Sum_probs=20.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.51  E-value=0.044  Score=50.81  Aligned_cols=23  Identities=39%  Similarity=0.628  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|+.|+||||+++.+..
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36999999999999999999885

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=93.50  E-value=0.082  Score=47.00  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=30.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          348 LISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      .|+|-|+-|+||||.++.++.  .....-..+.+  ..-+........+..++
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~--treP~~t~~~~~ir~~l   50 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVIL--KREPGGTETGEKIRKIL   50 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEE--EECCCCCcHHHHHHHHh
Confidence            478899999999999999887  44443333344  33333333444444444

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.49  E-value=0.05  Score=50.45  Aligned_cols=24  Identities=17%  Similarity=-0.028  Sum_probs=21.3

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|.++|++|+||||+|+.+..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=93.49  E-value=0.028  Score=50.38  Aligned_cols=23  Identities=9%  Similarity=-0.175  Sum_probs=20.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|+|..|+|||||++.+..
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35899999999999999999873

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=93.48  E-value=0.11  Score=49.40  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++++|.+|+||||++..++.
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988876

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=93.46  E-value=0.049  Score=49.09  Aligned_cols=23  Identities=22%  Similarity=0.676  Sum_probs=20.5

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.44  E-value=0.11  Score=54.52  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|+|+.|+|||||++.+..
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6999999999999999998765

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=93.43  E-value=0.053  Score=52.62  Aligned_cols=39  Identities=18%  Similarity=0.315  Sum_probs=26.8

Q ss_pred             hhHHHHHHHhhc--CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          330 NDILKLAKLTLN--SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       330 ~~~~~l~~~L~~--~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .-.+++.+.+..  ..+....+.|+|++|+||||+++.++.
T Consensus         6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A            6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            344444444421  123456799999999999999998776

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=93.43  E-value=0.049  Score=48.89  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|+|.|++|+||||+++.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999877

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=93.43  E-value=0.18  Score=47.92  Aligned_cols=24  Identities=25%  Similarity=0.063  Sum_probs=20.8

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..+++++|.+|+||||++..+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356999999999999999988863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.42  E-value=0.032  Score=48.30  Aligned_cols=24  Identities=25%  Similarity=-0.011  Sum_probs=21.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++++|+|..|+|||||+..+..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.41  E-value=0.033  Score=48.96  Aligned_cols=23  Identities=17%  Similarity=0.088  Sum_probs=20.3

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=93.40  E-value=0.024  Score=50.80  Aligned_cols=21  Identities=24%  Similarity=0.088  Sum_probs=19.3

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +|+|.|..|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999874

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.39  E-value=0.055  Score=51.73  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|+|++|+||||++..++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            346999999999999999998875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.39  E-value=0.056  Score=53.30  Aligned_cols=111  Identities=16%  Similarity=0.114  Sum_probs=60.5

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeE-EEEcCCCCCHHHHHHHHHHH--hcCCCCcCcchHHHHHHHHcc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRA-WVPVPEELERRELVTDILKQ--VGGSKVEKQLDPQKKLRKLFT  231 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~-wv~vs~~~~~~~l~~~i~~~--~~~~~~~~~~~~~~~l~~~l~  231 (501)
                      .-.+++|+|..|+|||||++.+..--.  ......+ ++...-.+....- ..++.|  ++.    ........++..|.
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~----~~~~~~~~l~~~L~  207 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DTKSFADALRAALR  207 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TBSCSHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhhhhccC-ceEEEeeecCC----CHHHHHHHHHHHhh
Confidence            346899999999999999998864211  1111222 2221111000000 000000  000    11223567777777


Q ss_pred             CCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          232 ENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       232 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      ...-+|++|.+.+.+....+....   ..|..|+.|+...+++.
T Consensus       208 ~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~  248 (372)
T 2ewv_A          208 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID  248 (372)
T ss_dssp             SCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred             hCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence            666789999998766554433322   34667899998877654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=93.38  E-value=0.034  Score=48.65  Aligned_cols=22  Identities=9%  Similarity=0.013  Sum_probs=19.9

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..|.+.|++|+||||+++.+..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999873

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=93.37  E-value=0.031  Score=51.57  Aligned_cols=22  Identities=18%  Similarity=0.072  Sum_probs=20.5

Q ss_pred             eeEEEEEeeCChhhHHHHhhhh
Q 010799          156 LFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ..+|+|+|++|+|||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999998

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.35  E-value=0.035  Score=51.80  Aligned_cols=23  Identities=13%  Similarity=0.029  Sum_probs=20.8

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            56899999999999999999874

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.33  E-value=0.036  Score=48.64  Aligned_cols=24  Identities=17%  Similarity=0.033  Sum_probs=21.2

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .-.+|.+.|++|+||||+++.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.32  E-value=0.22  Score=51.47  Aligned_cols=61  Identities=13%  Similarity=0.101  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +...-.+...|..++-+|+||+--+.   .....+...+.......|..||++|.+...+..++
T Consensus       390 q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a  453 (538)
T 3ozx_A          390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA  453 (538)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            34455566666677789999996541   21222222222200124778899999887776654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.31  E-value=0.057  Score=46.18  Aligned_cols=23  Identities=26%  Similarity=0.605  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -.+++|.|+.|+|||||.+.++.
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36999999999999999999887

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.31  E-value=0.034  Score=49.13  Aligned_cols=23  Identities=26%  Similarity=0.050  Sum_probs=20.5

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|++|+||||+|+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999874

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=93.30  E-value=0.024  Score=49.61  Aligned_cols=22  Identities=18%  Similarity=-0.000  Sum_probs=19.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999874

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=93.30  E-value=0.17  Score=50.67  Aligned_cols=24  Identities=38%  Similarity=0.185  Sum_probs=20.8

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|.++|.+|+||||++..+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999887763

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.29  E-value=0.027  Score=49.10  Aligned_cols=23  Identities=17%  Similarity=-0.119  Sum_probs=16.5

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999874

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=93.27  E-value=0.37  Score=49.25  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=20.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.++|+|+|.+|+||||++..++.
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~  123 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAY  123 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999988875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.27  E-value=0.064  Score=48.27  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=28.3

Q ss_pred             chhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          329 ENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       329 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .+..+.+.+.+..  .+.+.++|.|.+|+|||||+..+...
T Consensus        15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3444455554422  35689999999999999999998873

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=93.26  E-value=0.11  Score=60.48  Aligned_cols=86  Identities=16%  Similarity=0.189  Sum_probs=61.0

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC----CCCCHHHHHHH
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD----EESSLDDLESE  420 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~  420 (501)
                      +-++|-|+|+.|+||||||.++..  .....=...+|  +.+.+..+..-     +..++.+...    ++.+-++.+..
T Consensus      1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~--i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~ 1500 (1706)
T 3cmw_A         1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1500 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--ECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEE--EecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHH
Confidence            447999999999999999999887  44444455667  77766555442     5666555432    45566777777


Q ss_pred             HHHhcCCc-eEEEEEcCCCC
Q 010799          421 FTGILYEK-RYLVVLDDVHS  439 (501)
Q Consensus       421 l~~~l~~~-r~LlVlDnv~~  439 (501)
                      +...+++. .-+||+|-|..
T Consensus      1501 ~~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A         1501 CDALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp             HHHHHHHTCCSEEEESCSTT
T ss_pred             HHHHHHcCCCCEEEEccHHh
Confidence            77777654 55999999754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.26  E-value=0.038  Score=53.06  Aligned_cols=24  Identities=17%  Similarity=0.012  Sum_probs=21.5

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .-.+|+|+|..|+|||||++.+..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHh
Confidence            467999999999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=93.25  E-value=0.029  Score=53.31  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=18.5

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +..+|+|.|++|+||||+|+.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.25  E-value=0.039  Score=48.42  Aligned_cols=23  Identities=17%  Similarity=-0.044  Sum_probs=20.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999874

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=93.23  E-value=0.1  Score=50.24  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+++|+|++|+||||++..++.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999988776

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.23  E-value=0.096  Score=50.13  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=22.1

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....+++|.|+.|+|||||++.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4457999999999999999998876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=93.22  E-value=0.076  Score=52.28  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          343 SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       343 ~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -....+++|+|++|+|||||++.++.
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            34557999999999999999999887

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=93.17  E-value=0.026  Score=50.59  Aligned_cols=21  Identities=38%  Similarity=0.719  Sum_probs=19.5

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +|+|.|++|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999876

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.17  E-value=0.038  Score=49.36  Aligned_cols=23  Identities=13%  Similarity=0.056  Sum_probs=20.6

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+|.|.|++|+||||+|+.+...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.12  E-value=0.029  Score=48.43  Aligned_cols=22  Identities=27%  Similarity=0.049  Sum_probs=19.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.12  E-value=0.062  Score=51.30  Aligned_cols=36  Identities=25%  Similarity=0.240  Sum_probs=0.0

Q ss_pred             HHHHHHHHhcCC---------CCeeEEEEEeeCChhhHHHHhhhh
Q 010799          142 VNKLADFLIRSH---------SSLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       142 ~~~l~~~L~~~~---------~~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .++|.+.|....         ..-.+++|+|..|+|||||++.+.
T Consensus        77 ~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~La  121 (302)
T 3b9q_A           77 KESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLA  121 (302)
T ss_dssp             HHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHH

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.12  E-value=0.053  Score=52.28  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=22.1

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ...+|+|.|+.|+|||+||..++..
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3469999999999999999999883

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=93.10  E-value=0.029  Score=50.85  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=20.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|+|..|+|||||++.+..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35789999999999999999874

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=93.10  E-value=0.6  Score=42.38  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=17.4

Q ss_pred             eEEEEEecCCCChHHHHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIY  367 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~  367 (501)
                      +.+.+.|+.|+|||++...+.
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHHH
Confidence            589999999999998665543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=93.09  E-value=0.037  Score=49.19  Aligned_cols=24  Identities=8%  Similarity=-0.061  Sum_probs=21.2

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .-++|+|+|+.|+|||||++.+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            357899999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.09  E-value=0.036  Score=51.43  Aligned_cols=22  Identities=18%  Similarity=-0.132  Sum_probs=20.5

Q ss_pred             eeEEEEEeeCChhhHHHHhhhh
Q 010799          156 LFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      -.+|+|+|+.|+|||||++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999997

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=93.04  E-value=0.17  Score=45.35  Aligned_cols=107  Identities=15%  Similarity=0.110  Sum_probs=50.3

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHh
Q 010799          346 NFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD-EESSLDDLESEFTGI  424 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~  424 (501)
                      -.+..++|+-|.||||.+.....  +....-..++.  +....  +.......++..++..... ...+.+    .+.+.
T Consensus        28 G~l~vitG~MgsGKTT~lL~~a~--r~~~~g~kVli--~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~   97 (214)
T 2j9r_A           28 GWIEVICGSMFSGKSEELIRRVR--RTQFAKQHAIV--FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKH   97 (214)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEE--EECC-------------------CCEEECSSGG----GGGGG
T ss_pred             CEEEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEE--EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHH
Confidence            36888999999999998888776  33332222222  22111  1111122344444332211 011111    22233


Q ss_pred             cCCceEEEEEcCCCCh--hhHHHHHHhcCCCCCCCCCEEEEEeCC
Q 010799          425 LYEKRYLVVLDDVHSP--GAWYDLKRIFSPQASPIGSRVILITRE  467 (501)
Q Consensus       425 l~~~r~LlVlDnv~~~--~~~~~l~~~l~~~~~~~~~~iIiTtR~  467 (501)
                      +.++--+|++|+++-.  +.+ .++..+..    .+..||+|.++
T Consensus        98 ~~~~~dvViIDEaQF~~~~~V-~~l~~l~~----~~~~Vi~~Gl~  137 (214)
T 2j9r_A           98 ITEEMDVIAIDEVQFFDGDIV-EVVQVLAN----RGYRVIVAGLD  137 (214)
T ss_dssp             CCSSCCEEEECCGGGSCTTHH-HHHHHHHH----TTCEEEEEECS
T ss_pred             HhcCCCEEEEECcccCCHHHH-HHHHHHhh----CCCEEEEEecc
Confidence            3333349999998753  444 33333322    27899999984

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.02  E-value=0.043  Score=46.95  Aligned_cols=24  Identities=13%  Similarity=-0.047  Sum_probs=21.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .-.+++++|..|.|||||++.+..
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.02  E-value=0.048  Score=51.50  Aligned_cols=23  Identities=13%  Similarity=0.257  Sum_probs=21.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ...+|+|.|+.|+||||+|+.+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999999987

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.02  E-value=0.054  Score=48.68  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999887

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.99  E-value=0.055  Score=49.45  Aligned_cols=23  Identities=26%  Similarity=0.655  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++|.|++|+||||+++.+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999876

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=92.98  E-value=0.035  Score=50.63  Aligned_cols=21  Identities=19%  Similarity=0.550  Sum_probs=15.9

Q ss_pred             eEEEEEecCCCChHHHHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIY  367 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~  367 (501)
                      .+++|.|+.|+|||||++.+.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CEEEEECSCC----CHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999988

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=92.97  E-value=0.06  Score=51.30  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++|+|.|+.|+|||+||..++.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            36899999999999999999876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.97  E-value=0.054  Score=48.17  Aligned_cols=21  Identities=19%  Similarity=0.613  Sum_probs=19.9

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +|+|.|++|+||||+++.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999877

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=92.96  E-value=0.056  Score=59.62  Aligned_cols=21  Identities=5%  Similarity=-0.116  Sum_probs=19.5

Q ss_pred             eeEEEEEeeCChhhHHHHhhh
Q 010799          156 LFTISVVDVAGSVMTTDLWKS  176 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v  176 (501)
                      -.+++|+|+.|.|||||.+.+
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            478999999999999999988

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=92.94  E-value=0.34  Score=50.60  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +++.|.|++|+||||++..+..
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~  226 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVAD  226 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999988876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=92.91  E-value=0.061  Score=47.63  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.|.|.|++|+|||+||.++..
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999887

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=92.91  E-value=0.041  Score=48.93  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=20.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|++|+||||+|+.+..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999874

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=92.89  E-value=0.079  Score=51.00  Aligned_cols=24  Identities=33%  Similarity=0.250  Sum_probs=21.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|+|+|.+|+||||++..+..
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999988863

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=92.89  E-value=0.084  Score=55.36  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|+|+.|+|||||++.+..
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            6999999999999999998765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=92.88  E-value=0.064  Score=48.99  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...|+|.|++|+||||+|+.+..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999987

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=92.87  E-value=0.041  Score=47.19  Aligned_cols=21  Identities=14%  Similarity=-0.164  Sum_probs=19.2

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999874

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=92.85  E-value=0.3  Score=46.34  Aligned_cols=23  Identities=30%  Similarity=0.195  Sum_probs=20.3

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++++|.+|+||||++..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999988763

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=92.80  E-value=0.073  Score=50.64  Aligned_cols=25  Identities=32%  Similarity=0.325  Sum_probs=22.0

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...++++|.|+.|+|||+||..++.
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHH
Confidence            3457899999999999999999887

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=92.79  E-value=0.059  Score=48.91  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999877

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=92.76  E-value=0.049  Score=50.21  Aligned_cols=24  Identities=29%  Similarity=0.079  Sum_probs=21.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .-.+|+|.|..|+|||||++.+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.75  E-value=0.062  Score=51.07  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=92.74  E-value=0.075  Score=50.79  Aligned_cols=24  Identities=38%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|.|+|.+|+||||++..+..
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            457999999999999999988864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=92.74  E-value=0.043  Score=48.18  Aligned_cols=21  Identities=38%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +|+|.|+.|+||||+++.+.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.74  E-value=0.11  Score=47.39  Aligned_cols=24  Identities=33%  Similarity=0.699  Sum_probs=21.7

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ....|+|.|++|+||||+++.+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999988

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=92.73  E-value=0.046  Score=49.68  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=20.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...|.|.|++|+||||+|+.+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999874

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=92.69  E-value=0.074  Score=48.73  Aligned_cols=32  Identities=16%  Similarity=0.105  Sum_probs=0.0

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccccccceeEEE
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWV  192 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv  192 (501)
                      +++|+|..|+|||||.+.+.   .........+++
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~---Gl~~p~~G~I~~   64 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIG---CLDKPTEGEVYI   64 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHT---TSSCCSEEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHh---cCCCCCceEEEE

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=92.68  E-value=0.37  Score=53.16  Aligned_cols=21  Identities=14%  Similarity=0.392  Sum_probs=19.4

Q ss_pred             ceEEEEEecCCCChHHHHHHH
Q 010799          346 NFLISVAGAAGSGKTALVKTI  366 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~  366 (501)
                      ..+++|+|+.|.||||+.+.+
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            479999999999999999987

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=92.67  E-value=0.047  Score=48.80  Aligned_cols=23  Identities=17%  Similarity=-0.185  Sum_probs=20.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.|.|+.|+||||+++.+..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999974

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=92.65  E-value=0.052  Score=49.11  Aligned_cols=56  Identities=13%  Similarity=0.087  Sum_probs=34.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccc---c-ccceeEEEEcCCCCCHHHHHHHHHHHhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVK---E-YFQCRAWVPVPEELERRELVTDILKQVG  212 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~---~-~F~~~~wv~vs~~~~~~~l~~~i~~~~~  212 (501)
                      -.+++|+|.+|+|||||++.+.......   . .-...+|+.-...+.... +..+.+.++
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~   84 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG   84 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence            4689999999999999999986421111   1 123467776655444443 233444443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=92.64  E-value=0.036  Score=50.53  Aligned_cols=21  Identities=19%  Similarity=0.039  Sum_probs=15.7

Q ss_pred             eEEEEEeeCChhhHHHHhhhh
Q 010799          157 FTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .+++|+|..|+|||||++.+.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CEEEEECSCC----CHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999887

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=92.63  E-value=0.052  Score=50.29  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|.|++|+||||+++.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=92.63  E-value=0.05  Score=49.48  Aligned_cols=20  Identities=25%  Similarity=0.245  Sum_probs=0.0

Q ss_pred             EEEEEeeCChhhHHHHhhhh
Q 010799          158 TISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~  177 (501)
                      +++|+|..|+|||||.+.+.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~   51 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILG   51 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHh

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=92.62  E-value=0.08  Score=51.74  Aligned_cols=36  Identities=25%  Similarity=0.240  Sum_probs=0.0

Q ss_pred             HHHHHHHHhcCC---------CCeeEEEEEeeCChhhHHHHhhhh
Q 010799          142 VNKLADFLIRSH---------SSLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       142 ~~~l~~~L~~~~---------~~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .++|.+.|....         ..-.+++|+|..|+|||||++.+.
T Consensus       134 ~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~La  178 (359)
T 2og2_A          134 KESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLA  178 (359)
T ss_dssp             HHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHH

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=92.61  E-value=0.046  Score=49.56  Aligned_cols=23  Identities=9%  Similarity=-0.116  Sum_probs=20.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|+|..|+|||||.+.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999874

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=92.61  E-value=0.43  Score=58.31  Aligned_cols=115  Identities=13%  Similarity=0.120  Sum_probs=62.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCC-CcCcchHHHHHHHHccC---
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSK-VEKQLDPQKKLRKLFTE---  232 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~l~~~l~~---  232 (501)
                      .-|-+||.+|+||||+.+.+.+-......-.....+--++..+..++...    +.... ...+.-+...+++..++   
T Consensus       924 ~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~----~d~~t~eW~DGils~~~R~~~~~~~~  999 (2695)
T 4akg_A          924 QALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGS----MLKATLEWRDGLFTSILRRVNDDITG  999 (2695)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTE----ECTTTCCEECCSHHHHHHHHHTCCCS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcce----ecCCCCeEecChHHHHHHHHHhcccc
Confidence            45778999999999998877642111111223333333444555554311    11111 11222345666665432   


Q ss_pred             ----CeEEEEEecCCChhHHHHHhhcCCCC-------------CCCcEEEEEeccccchh
Q 010799          233 ----NRYLVVIINARTPDIWDILKYLFPNS-------------SNGSRVILSFQEADAAR  275 (501)
Q Consensus       233 ----kr~LlVlDdv~~~~~~~~l~~~~~~~-------------~~gs~iivTtr~~~va~  275 (501)
                          .+.-||+|+.-+..-.+.+-..+.++             .+..++|+-+.+-..|.
T Consensus      1000 ~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~AS 1059 (2695)
T 4akg_A         1000 TFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTT 1059 (2695)
T ss_dssp             SCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSC
T ss_pred             ccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCC
Confidence                27789999865543224454444443             24677888887777664

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=92.60  E-value=0.91  Score=36.23  Aligned_cols=60  Identities=12%  Similarity=0.074  Sum_probs=44.4

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHhhh--cC--hh------hHHHHHHHHHHhHHHHHHHHhhhhhhcccc
Q 010799           23 EDEGLVAQLINSSEELEKVRKSWEEKEI--ND--VS------PKLLNAVSQVQDITDTFRIENCKRVYLGVI   84 (501)
Q Consensus        23 ~~~~~~~~l~~~~~~l~~~~~~~e~~~~--~~--~~------~~l~~~~~~~edllD~~~~~~~~~~~~~~~   84 (501)
                      ++.+...-+.....+++.+...++.-+.  .+  ..      ..++.|+.+++|+  .|+++++++.|....
T Consensus        13 ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdl--aYD~ED~iD~f~~~~   82 (115)
T 3qfl_A           13 LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVREL--SYVIEDVVDKFLVQV   82 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence            3445555667778888888888877664  33  32      1389999999999  999999999885443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=92.58  E-value=0.067  Score=51.72  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|.|++|+||||||..++.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5899999999999999999887

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.57  E-value=0.061  Score=56.64  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|+|+.|+|||||++.+..
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            6999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	501
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	4e-20

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 88.3 bits (218), Expect = 4e-20
 Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 24/204 (11%)

Query: 305 DDRALPKQVPDEEISEEVTAVVSMENDILKL-AKLTLNSSDKNFLISVAGAAGSGKTALV 363
           D + L   VP +            E  + ++  KL       +F + + G AGSGK+ + 
Sbjct: 8   DRKLLLGNVPKQ------MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIA 61

Query: 364 KTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD---------EESSL 414
                 S         +   +  S      +        L     D           +S+
Sbjct: 62  SQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSV 121

Query: 415 DDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYVARSF 474
                    ++     L V DDV         +         +  R ++ TR+  ++ + 
Sbjct: 122 VLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAA 173

Query: 475 SPSIFLHQLRPLNEEESGKLFQRR 498
           S +    ++  L  +E     +  
Sbjct: 174 SQTCEFIEVTSLEIDECYDFLEAY 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	501
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.93
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.92
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.06
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.0
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.85
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.73
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.73
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.73
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.72
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.65
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.61
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.6
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.6
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.53
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.5
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.48
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.48
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.48
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.39
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.37
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.23
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.2
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.17
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.17
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.08
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.0
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.96
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.91
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.91
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.84
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.83
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.83
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.81
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.77
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.71
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.7
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.63
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.59
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.58
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.29
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.27
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.26
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.25
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.17
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.16
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.1
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.07
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.99
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.95
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.94
d1okkd2	207	GTPase domain of the signal recognition particle r	96.9
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.9
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.81
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.81
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.75
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.75
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.72
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.69
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.68
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.68
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.64
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.63
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.62
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.62
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.61
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.6
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.6
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.59
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.58
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.57
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.55
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.55
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.54
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.53
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.53
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.52
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.49
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.49
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.48
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.45
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.43
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.42
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.4
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.38
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.34
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.34
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.3
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.28
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.28
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.27
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.23
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.19
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.18
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.17
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.15
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.09
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.07
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.06
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.05
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.02
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.0
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.99
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.96
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.95
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.95
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.95
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.88
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.88
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.84
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.84
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.81
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.79
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.79
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.78
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.78
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.76
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.74
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.73
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.73
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.71
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.69
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.67
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.65
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.64
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.63
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.62
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.59
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.59
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.57
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.55
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.53
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.53
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.5
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.48
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.48
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.42
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.4
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.37
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.36
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.35
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.35
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.34
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.31
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.3
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.27
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.27
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.27
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.26
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.25
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.22
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.17
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.17
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.13
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.12
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.12
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.1
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.08
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.02
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.02
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.98
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.97
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.94
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.87
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.87
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.83
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.78
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.77
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	94.71
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.7
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.69
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.6
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.56
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.56
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.44
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.41
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.38
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.36
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.31
d1okkd2	207	GTPase domain of the signal recognition particle r	94.31
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.28
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.27
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.26
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.24
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.24
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.2
d2qy9a2	211	GTPase domain of the signal recognition particle r	94.18
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.15
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.07
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.06
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.06
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.99
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.94
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.81
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	93.81
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	93.79
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.77
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	93.72
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.69
d1j8yf2	211	GTPase domain of the signal sequence recognition p	93.67
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.65
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.54
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.53
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.52
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.5
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.48
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.45
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	93.44
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.41
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.4
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.37
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.33
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.3
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.27
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.26
d1vmaa2	213	GTPase domain of the signal recognition particle r	93.21
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.1
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.1
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.08
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.97
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	92.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.95
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	92.95
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	92.93
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	92.93
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.89
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.88
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.85
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.84
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.84
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.83
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	92.81
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.79
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.78
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.73
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.69
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.64
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	92.64
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.62
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.58
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.55
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.53
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.52
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.52
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	92.51
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.5
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.41
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.35
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	92.35
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.32
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.31
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.29
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	92.28
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.23
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.18
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.14
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.04
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.04
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.04
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.03
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.02
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.0
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	91.99
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.96
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	91.93
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.92
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	91.91
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.88
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	91.88
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.87
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.81
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	91.78
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	91.78
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.76
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.75
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.71
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	91.71
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	91.64
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.64
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.56
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	91.53
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	91.51
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.5
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	91.46
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.43
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.42
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.41
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.4
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.4
d2fh5b1	207	Signal recognition particle receptor beta-subunit	91.39
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.39
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.39
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.38
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.36
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.36
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.35
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.32
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	91.29
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	91.26
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.25
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	91.25
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	91.23
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.19
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.19
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	91.17
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.16
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.15
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.12
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.12
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.1
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.1
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.09
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.09
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	91.07
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	91.06
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.05
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	91.04
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	91.04
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	91.03
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	90.99
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	90.99
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	90.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	90.92
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	90.92
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	90.92
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.9
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.89
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	90.88
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	90.87
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.85
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	90.85
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	90.79
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.76
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.74
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	90.73
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.72
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	90.69
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	90.65
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.65
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	90.65
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.64
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	90.63
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.61
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.59
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	90.57
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.56
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	90.53
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	90.52
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	90.5
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	90.48
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	90.46
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	90.44
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.41
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.41
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.37
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.35
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.32
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	90.28
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	90.26
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	90.25
d1nrjb_	209	Signal recognition particle receptor beta-subunit	90.21
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	90.19
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	90.17
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.14
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	90.1
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.09
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	90.08
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.06
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.04
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.03
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.99
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	89.93
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	89.91
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	89.91
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.91
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	89.89
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	89.87
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.81
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	89.78
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.72
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	89.69
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.68
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	89.67
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.65
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.62
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.62
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.6
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.59
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	89.52
d2fh5b1	207	Signal recognition particle receptor beta-subunit	89.48
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.44
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	89.42
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.4
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.37
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	89.36
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	89.34
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	89.27
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	89.09
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.02
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.02
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	89.02
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	89.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	88.98
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.98
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	88.93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	88.91
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.82
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	88.79
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	88.77
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	88.72
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	88.67
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	88.54
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	88.39
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.37
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.35
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	88.31
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	88.31
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	88.3
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	88.23
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	88.14
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.95
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	87.91
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	87.85
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	87.72
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	87.7
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	87.7
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	87.57
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	87.55
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	87.43
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	87.13
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	87.09
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	86.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	86.65
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	86.57
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	85.73
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.36
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	85.3
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	85.1
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	84.37
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	84.09
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	83.94
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	83.57
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.49
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	83.34
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	83.14
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	82.93
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	82.43
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	82.43
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	81.85
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	81.82
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	81.75
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	81.46
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	81.43
d1tuea_	205	Replication protein E1 helicase domain {Human papi	81.02
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	80.76
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	80.67
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	80.28
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	80.01

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=1.7e-25  Score=213.05  Aligned_cols=168  Identities=16%  Similarity=0.126  Sum_probs=132.3

Q ss_pred             cceeecchhHHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHcccc--cccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYESSY--TKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~--~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ..++||+.++++|.++|.. .+...++|+|+||||+||||||+++|++..  ...+|++++|  ++++...+...+...+
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~W--v~vs~~~~~~~l~~~~   97 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVW--LKDSGTAPKSTFDLFT   97 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEE--EECCCCSTTHHHHHHH
T ss_pred             CceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEE--EEecCCCCHHHHHHHH
Confidence            4588999999999999854 445678999999999999999999998533  5677899999  9999888877766655


Q ss_pred             HHHhcc---CCCC------CCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799          400 LRQLTQ---DEVD------EESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAYV  470 (501)
Q Consensus       400 ~~~l~~---~~~~------~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~  470 (501)
                      ...+..   ....      ...........+.+.+.++++|+||||+|+..++..+.        ..+++||||||+..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~--------~~~srilvTTR~~~v  169 (277)
T d2a5yb3          98 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEI  169 (277)
T ss_dssp             HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGG
T ss_pred             HHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhc--------ccCceEEEEeehHHH
Confidence            544322   1111      11222334556888899999999999999988877653        247899999999999


Q ss_pred             HhhcCCCCcceeCCCCChHHHHHHHHHhhc
Q 010799          471 ARSFSPSIFLHQLRPLNEEESGKLFQRRLK  500 (501)
Q Consensus       471 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~  500 (501)
                      +..+.....+|+|++|+.+||++||.++++
T Consensus       170 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~  199 (277)
T d2a5yb3         170 SNAASQTCEFIEVTSLEIDECYDFLEAYGM  199 (277)
T ss_dssp             GGGCCSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred             HHhcCCCCceEECCCCCHHHHHHHHHHHhC
Confidence            988764557899999999999999998765

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=1.5e-25  Score=213.45  Aligned_cols=155  Identities=8%  Similarity=0.021  Sum_probs=119.4

Q ss_pred             cccccccchhhHHHHHHHHhc-CCCCeeEEEEEeeCChhhHHHHhhhhcccc--cccccceeEEEEcCCCCCHHHHHHHH
Q 010799          131 KKTGILDLNKEVNKLADFLIR-SHSSLFTISVVDVAGSVMTTDLWKSYECET--VKEYFQCRAWVPVPEELERRELVTDI  207 (501)
Q Consensus       131 ~~~~~vg~~~~~~~l~~~L~~-~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~--v~~~F~~~~wv~vs~~~~~~~l~~~i  207 (501)
                      ..+.++||+.++++|+++|.. .+....+|+|+||||+||||||+++||+..  +..+|++++||++++.++...+...+
T Consensus        18 ~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~   97 (277)
T d2a5yb3          18 KQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT   97 (277)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred             CCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHH
Confidence            356788999999999999975 345688999999999999999999998754  67789999999999999988777666


Q ss_pred             HHHh---cCCCCc------Ccch---HHHHHHHHccCCeEEEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          208 LKQV---GGSKVE------KQLD---PQKKLRKLFTENRYLVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       208 ~~~~---~~~~~~------~~~~---~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      ...+   +.....      ....   ....+.+.+.++|+|+||||||+.+.|+.+..      .|||||||||+.+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~~  171 (277)
T d2a5yb3          98 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISN  171 (277)
T ss_dssp             HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGGG
T ss_pred             HHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHHHH
Confidence            5543   222111      1111   24568888999999999999999999876542      4899999999999987


Q ss_pred             c-------ccCCCCCCCcccCcc
Q 010799          276 C-------RNMSFFGGESSFKPK  291 (501)
Q Consensus       276 ~-------~~~~~l~~~~~~~~~  291 (501)
                      .       +.+++|+.+++|+..
T Consensus       172 ~~~~~~~~~~l~~L~~~ea~~Lf  194 (277)
T d2a5yb3         172 AASQTCEFIEVTSLEIDECYDFL  194 (277)
T ss_dssp             GCCSCEEEEECCCCCHHHHHHHH
T ss_pred             hcCCCCceEECCCCCHHHHHHHH
Confidence            4       334445555555553

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.06  E-value=1.5e-09  Score=100.92  Aligned_cols=172  Identities=16%  Similarity=0.224  Sum_probs=113.6

Q ss_pred             cceeecchhHHHHHHHhhc----CCCCceEEEEEecCCCChHHHHHHHHcccccccCCcc-ceeEEEEeCCCCChHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLN----SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPC-RAWANVYVSQDFDMRSVFA  397 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~----~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~-~~w~~v~~~~~~~~~~~~~  397 (501)
                      ..++||+.+++++.++|..    .+...+.+.|+|++|+|||++|+.+++  ........ .++  +.+.........+.
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~--~l~~~~~~~~~~--~~~~~~~~~~~~~~   91 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVY--INGFIYRNFTAIIG   91 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEE--EETTTCCSHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHH--HHhcccCCcEEE--ecchhhhhhhhhhh
Confidence            3489999999999998853    345567999999999999999999998  44444332 345  67777778888888


Q ss_pred             HHHHHhccCCCCCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCChhh-----HHHHHHhcCCCCCCCCCEEEEEeCChHH
Q 010799          398 DILRQLTQDEVDEESSLDDLESEFTGILYE--KRYLVVLDDVHSPGA-----WYDLKRIFSPQASPIGSRVILITREAYV  470 (501)
Q Consensus       398 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDnv~~~~~-----~~~l~~~l~~~~~~~~~~iIiTtR~~~~  470 (501)
                      .+.....................+.+.+..  ...++++|++++...     ...+....+.. ......+|.++.....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~  170 (276)
T d1fnna2          92 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKL-GAFRIALVIVGHNDAV  170 (276)
T ss_dssp             HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHH-SSCCEEEEEEESSTHH
T ss_pred             hhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccc-cccceEEeecCCchhh
Confidence            888887776655555666666666666543  466777777765211     11222111110 1233445556655443


Q ss_pred             HhhcCC------CCcceeCCCCChHHHHHHHHHhh
Q 010799          471 ARSFSP------SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       471 ~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.+      ....+.+++++.++..+++.+++
T Consensus       171 ~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~  205 (276)
T d1fnna2         171 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA  205 (276)
T ss_dssp             HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred             hhhcchhhhhhhcchhccccchhHHHHHHHHHHHH
Confidence            322211      23568899999999999988764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.00  E-value=1e-09  Score=102.29  Aligned_cols=162  Identities=15%  Similarity=0.245  Sum_probs=92.1

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEe-----CCCCChHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV-----SQDFDMRSV  395 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~-----~~~~~~~~~  395 (501)
                      ..++|+||++++++|.+.      ..+++.|+|++|+|||+|+++++.  .....+   .|  +.+     ........+
T Consensus        10 ~~~~f~GR~~el~~l~~~------~~~~i~i~G~~G~GKTsLl~~~~~--~~~~~~---~~--i~~~~~~~~~~~~~~~~   76 (283)
T d2fnaa2          10 NRKDFFDREKEIEKLKGL------RAPITLVLGLRRTGKSSIIKIGIN--ELNLPY---IY--LDLRKFEERNYISYKDF   76 (283)
T ss_dssp             SGGGSCCCHHHHHHHHHT------CSSEEEEEESTTSSHHHHHHHHHH--HHTCCE---EE--EEGGGGTTCSCCCHHHH
T ss_pred             ChhhCCChHHHHHHHHhc------cCCEEEEEcCCCCcHHHHHHHHHH--HCCCCe---EE--EEeccccccccccHHHH
Confidence            357899999999999763      236899999999999999999987  444333   23  332     112223333


Q ss_pred             HHHHHHHhccC--------------C--------------CCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------h
Q 010799          396 FADILRQLTQD--------------E--------------VDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------G  441 (501)
Q Consensus       396 ~~~i~~~l~~~--------------~--------------~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------~  441 (501)
                      ...+.......              .              ........++.+.+.+ ...+++++++|+++..      .
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~i~id~~~~~~~~~~~~  155 (283)
T d2fnaa2          77 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQ-ASKDNVIIVLDEAQELVKLRGVN  155 (283)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHH-TCSSCEEEEEETGGGGGGCTTCC
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHh-hcccccccccchhhhhcccchHH
Confidence            33333322110              0              0012233344444332 3467899999998642      1


Q ss_pred             hHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcCC-----------CCcceeCCCCChHHHHHHHHHhh
Q 010799          442 AWYDLKRIFSPQASPIGSRVILITREAYVARSFSP-----------SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       442 ~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~~-----------~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      .+..+......   ......+++++..........           ....+.|++++.+++.+++.+..
T Consensus       156 ~~~~l~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~  221 (283)
T d2fnaa2         156 LLPALAYAYDN---LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF  221 (283)
T ss_dssp             CHHHHHHHHHH---CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---hhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhh
Confidence            12222222222   334555666555433222211           23568899999999999987653

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=3e-08  Score=91.05  Aligned_cols=154  Identities=14%  Similarity=0.160  Sum_probs=98.0

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccc---ccccCC-ccceeEEEEeCCCCChHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESS---YTKKNF-PCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~---~~~~~f-~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      +.++||+++++++...|....  ...+.++|++|+|||+|+..+++..   .+.... ...+| .++++.          
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~--k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~-~l~~~~----------   84 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY-SLDIGS----------   84 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE-ECCCC-----------
T ss_pred             CcccChHHHHHHHHHHHhcCc--cCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeE-Eeeech----------
Confidence            458999999999999996433  3567799999999999999887732   111122 33455 022111          


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhc-CCceEEEEEcCCCCh----------hhHHHHH-HhcCCCCCCCCCEEEEEeC
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGIL-YEKRYLVVLDDVHSP----------GAWYDLK-RIFSPQASPIGSRVILITR  466 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDnv~~~----------~~~~~l~-~~l~~~~~~~~~~iIiTtR  466 (501)
                         .+.+..  .....++....+.+.+ .....++++|++...          .+...++ ++|.    ...-++|.||.
T Consensus        85 ---liag~~--~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~----rg~i~vIgatT  155 (268)
T d1r6bx2          85 ---LLAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS----SGKIRVIGSTT  155 (268)
T ss_dssp             -----CCCC--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS----SCCCEEEEEEC
T ss_pred             ---HhccCc--cchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh----CCCCeEEEeCC
Confidence               011111  1234555555555554 445799999998762          1222333 3332    34578899998


Q ss_pred             ChHHHhhcCC------CCcceeCCCCChHHHHHHHHHh
Q 010799          467 EAYVARSFSP------SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       467 ~~~~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      .+........      ....+.|++++.+++.+++...
T Consensus       156 ~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~  193 (268)
T d1r6bx2         156 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL  193 (268)
T ss_dssp             HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHh
Confidence            8877665553      3469999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.3e-08  Score=86.83  Aligned_cols=151  Identities=13%  Similarity=0.122  Sum_probs=92.9

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccc---ccccCC-ccceeEEEEeCCCCChHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESS---YTKKNF-PCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~---~~~~~f-~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      +..+||+++++++...|....  ..-+.++|++|+|||+++..++...   ++-... +..+| .+++      ..+   
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~--k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~-~ld~------~~L---   89 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL-ALDM------GAL---   89 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE-EECH------HHH---
T ss_pred             CCCcCcHHHHHHHHHHHhccC--CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEE-EeeH------HHH---
Confidence            448999999999999996533  3467899999999999998887732   111122 34455 0221      111   


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhc-C-CceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGIL-Y-EKRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIGSRVILITR  466 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~~~iIiTtR  466 (501)
                          +.+...  ....++....+.+.+ . ..+.+|++|++...          +.-+.|.+++..    ...++|.||.
T Consensus        90 ----iAg~~~--rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r----g~l~~IgatT  159 (195)
T d1jbka_          90 ----VAGAKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR----GELHCVGATT  159 (195)
T ss_dssp             ----HTTTCS--HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT----TSCCEEEEEC
T ss_pred             ----hccCCc--cHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC----CCceEEecCC
Confidence                111110  012233333333322 2 34799999998652          122445555554    3567888888


Q ss_pred             ChHHHhhcCC------CCcceeCCCCChHHHHHHH
Q 010799          467 EAYVARSFSP------SIFLHQLRPLNEEESGKLF  495 (501)
Q Consensus       467 ~~~~~~~~~~------~~~~~~l~~L~~~ea~~Lf  495 (501)
                      .+........      ....+.|++++.+++..++
T Consensus       160 ~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence            7776665543      4579999999999998754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=2.9e-08  Score=89.69  Aligned_cols=157  Identities=16%  Similarity=0.168  Sum_probs=96.0

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.++.++.|..++..+.  .+.+.++|++|+|||++|+.+++  .+..........+++.+...+.......+.
T Consensus        12 ~~~divg~~~~~~~L~~~i~~~~--~~~lLl~Gp~G~GKttl~~~la~--~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~   87 (227)
T d1sxjc2          12 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR--EIYGKNYSNMVLELNASDDRGIDVVRNQIK   87 (227)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH--HHHTTSHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChhHHHHHHHH--HhhcCCCcceeEEecccccCCeeeeecchh
Confidence            34779999999999999996533  34477999999999999999988  332221111111123333322222111111


Q ss_pred             HHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCC
Q 010799          401 RQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPS  477 (501)
Q Consensus       401 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~  477 (501)
                      ......                .....+..++|+|+++.  ......++..+..  ....+.++++|... .+...+.+.
T Consensus        88 ~~~~~~----------------~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~--~~~~~~~~~~~~~~~~i~~~i~sr  149 (227)
T d1sxjc2          88 DFASTR----------------QIFSKGFKLIILDEADAMTNAAQNALRRVIER--YTKNTRFCVLANYAHKLTPALLSQ  149 (227)
T ss_dssp             HHHHBC----------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHTT
T ss_pred             hccccc----------------cccCCCeEEEEEeccccchhhHHHHHHHHhhh--cccceeeccccCcHHHhHHHHHHH
Confidence            111111                11123456888999986  3455667766666  56677888877653 233323335


Q ss_pred             CcceeCCCCChHHHHHHHHHhh
Q 010799          478 IFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       478 ~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.+.+++.++-.+++.+.+
T Consensus       150 ~~~i~~~~~~~~~i~~~l~~I~  171 (227)
T d1sxjc2         150 CTRFRFQPLPQEAIERRIANVL  171 (227)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHH
T ss_pred             Hhhhcccccccccccccccccc
Confidence            6789999999999888877643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.73  E-value=3e-08  Score=92.35  Aligned_cols=173  Identities=18%  Similarity=0.193  Sum_probs=106.2

Q ss_pred             cceeecchhHHHHHHHhhc----CC---CCceEEEEEecCCCChHHHHHHHHcccccccCC------ccceeEEEEeCCC
Q 010799          323 TAVVSMENDILKLAKLTLN----SS---DKNFLISVAGAAGSGKTALVKTIYESSYTKKNF------PCRAWANVYVSQD  389 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~----~~---~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f------~~~~w~~v~~~~~  389 (501)
                      ..|+||+.++++|.+++..    +.   +...++.++|++|+|||++++.+++  ......      ....+  +++...
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~--~l~~~~~~~~~~~~~~~--~~~~~~   91 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAY--VNAFNA   91 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEE--EEGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHH--HHHhhcccccCCceeee--eccccc
Confidence            4589999999999887631    11   1123566789999999999999988  332211      22334  677777


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC--CceEEEEEcCCCCh--------hhH---HHHHHhcCCCCCC
Q 010799          390 FDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILY--EKRYLVVLDDVHSP--------GAW---YDLKRIFSPQASP  456 (501)
Q Consensus       390 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDnv~~~--------~~~---~~l~~~l~~~~~~  456 (501)
                      .+....+..+...+...............+.+.+...  ....++++|.++..        +..   ..+...+......
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~  171 (287)
T d1w5sa2          92 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV  171 (287)
T ss_dssp             CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred             cchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhcc
Confidence            7788888888888777665445566666666666554  34677888887642        111   1122223221012


Q ss_pred             CCCEEE-EEeCChHHH-------hhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          457 IGSRVI-LITREAYVA-------RSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       457 ~~~~iI-iTtR~~~~~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+| +++......       .........+.+++++.++..+++..++
T Consensus       172 ~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~  222 (287)
T d1w5sa2         172 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA  222 (287)
T ss_dssp             CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred             cceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhH
Confidence            233333 343332211       1111135688999999999999998765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=2.3e-08  Score=90.25  Aligned_cols=156  Identities=17%  Similarity=0.190  Sum_probs=95.5

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc-cceeEEEEeCCCCChHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP-CRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~-~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ..+++|.++.++.|..++....  .+.+.++|++|+||||+|+.+++  .....+. ..++ +++.+...+...+...+.
T Consensus        14 ~~d~ig~~~~~~~L~~~~~~~~--~~~~ll~Gp~G~GKTt~a~~la~--~l~~~~~~~~~~-~~n~~~~~~~~~i~~~~~   88 (224)
T d1sxjb2          14 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVL-ELNASDDRGIDVVRNQIK   88 (224)
T ss_dssp             GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEE-EECTTSCCSHHHHHTHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHcCC--CCeEEEECCCCCCchhhHHHHHH--HHhccccccccc-cccccccCCceehhhHHH
Confidence            4789999999999999996543  34578999999999999999887  3332221 1111 144444444333322222


Q ss_pred             HHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCC
Q 010799          401 RQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPS  477 (501)
Q Consensus       401 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~  477 (501)
                      ........               ....+..++|+|+++.  ......++..+..  ....+++++||.+. .+...+.+.
T Consensus        89 ~~~~~~~~---------------~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~--~~~~~~~i~~~~~~~~i~~~l~sr  151 (224)
T d1sxjb2          89 HFAQKKLH---------------LPPGKHKIVILDEADSMTAGAQQALRRTMEL--YSNSTRFAFACNQSNKIIEPLQSQ  151 (224)
T ss_dssp             HHHHBCCC---------------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHTT
T ss_pred             HHHHhhcc---------------CCCcceEEEEEecccccchhHHHHHhhhccc--cccceeeeeccCchhhhhhHHHHH
Confidence            22211111               0123456888999986  3334455554444  45566666666543 333333335


Q ss_pred             CcceeCCCCChHHHHHHHHHhh
Q 010799          478 IFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       478 ~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.+++++.++-...+.+.+
T Consensus       152 ~~~i~~~~~~~~~i~~~l~~i~  173 (224)
T d1sxjb2         152 CAILRYSKLSDEDVLKRLLQII  173 (224)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHhhhcccchhhhHHHHHHHH
Confidence            5689999999999988887644

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=1.1e-07  Score=86.44  Aligned_cols=167  Identities=14%  Similarity=0.207  Sum_probs=98.4

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ...+++|.++.++.|..++..+ .-++.+.|+|++|+|||++|+.+++..........         ...........+.
T Consensus        10 ~~~dlig~~~~~~~L~~~i~~~-~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~---------~~~~~~~~~~~i~   79 (239)
T d1njfa_          10 TFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---------TPCGVCDNCREIE   79 (239)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHTT-CCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCS---------SCCSCSHHHHHHH
T ss_pred             CHHHccChHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCcccccc---------CccccchHHHHHH
Confidence            3578999999999999999653 33457889999999999999998773211111111         0111111222222


Q ss_pred             HHhccC----CCCCCCCHHHHHHHHHHhc----CCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-H
Q 010799          401 RQLTQD----EVDEESSLDDLESEFTGIL----YEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-Y  469 (501)
Q Consensus       401 ~~l~~~----~~~~~~~~~~~~~~l~~~l----~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~  469 (501)
                      ..-...    ........+.+...+....    .++..++|||+++.  ....+.|+..+..  .+..+++|++|.+. .
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~--~~~~~~~il~tn~~~~  157 (239)
T d1njfa_          80 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--PPEHVKFLLATTDPQK  157 (239)
T ss_dssp             HTCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS--CCTTEEEEEEESCGGG
T ss_pred             cCCCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhc--CCCCeEEEEEcCCccc
Confidence            211000    0001122333332222221    13456889999986  3555677777766  56677777777654 3


Q ss_pred             HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +.....+....+.+++++.++-.+.+...+
T Consensus       158 i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~  187 (239)
T d1njfa_         158 LPVTILSRCLQFHLKALDVEQIRHQLEHIL  187 (239)
T ss_dssp             SCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             cChhHhhhhcccccccCcHHHhhhHHHHHH
Confidence            333333355789999999999888776543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=2.5e-08  Score=90.63  Aligned_cols=167  Identities=13%  Similarity=0.104  Sum_probs=96.3

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC-ccceeEEEEeCCCCChHHHHHHH
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF-PCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f-~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ..++++|.++.++.|..++...  ..+.+.++|++|+||||+|+.+++  +..... ....+..++.+...........+
T Consensus        10 ~~~diig~~~~~~~l~~~i~~~--~~~~lll~Gp~G~GKTtl~~~i~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (237)
T d1sxjd2          10 NLDEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTK--ELYGPDLMKSRILELNASDERGISIVREKV   85 (237)
T ss_dssp             STTTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHH--HHHHHHHHTTSEEEECSSSCCCHHHHTTHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCChHHHHHHHHH--HHcCCcccccchhheeccccccchHHHHHH
Confidence            3567999999999999999643  334588999999999999999988  332111 11111013334333333322222


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCC
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSP  476 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~  476 (501)
                      -........  ...    ...+......+.-++|+|+++.  ......+...+..  ....+.+|+|+.+. .+.....+
T Consensus        86 ~~~~~~~~~--~~~----~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s  157 (237)
T d1sxjd2          86 KNFARLTVS--KPS----KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMET--YSGVTRFCLICNYVTRIIDPLAS  157 (237)
T ss_dssp             HHHHHSCCC--CCC----TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHH
T ss_pred             HHHhhhhhh--hhh----HHHHhhccccCceEEEEecccccCHHHHHHHhhcccc--ccccccccccccccccccccccc
Confidence            221111111  001    1223333344555789999986  3344555554444  44566677765543 22222222


Q ss_pred             CCcceeCCCCChHHHHHHHHHhh
Q 010799          477 SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       477 ~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ....+.+.+++.++..+++.+.+
T Consensus       158 r~~~i~f~~~~~~~~~~~L~~i~  180 (237)
T d1sxjd2         158 QCSKFRFKALDASNAIDRLRFIS  180 (237)
T ss_dssp             HSEEEECCCCCHHHHHHHHHHHH
T ss_pred             hhhhhccccccccccchhhhhhh
Confidence            34688999999999999887654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=4.9e-08  Score=89.48  Aligned_cols=166  Identities=17%  Similarity=0.186  Sum_probs=86.4

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccc----cCCccceeEEEEeCC--------
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTK----KNFPCRAWANVYVSQ--------  388 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~----~~f~~~~w~~v~~~~--------  388 (501)
                      ..++++|.++..+.|..++... ...+.+.|+|++|+||||+|+.+++.....    ..+....|  .....        
T Consensus         9 ~~~diig~~~~~~~L~~~~~~~-~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   85 (252)
T d1sxje2           9 SLNALSHNEELTNFLKSLSDQP-RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF--VTASNRKLELNVV   85 (252)
T ss_dssp             SGGGCCSCHHHHHHHHTTTTCT-TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCE
T ss_pred             CHHHccCcHHHHHHHHHHHHcC-CCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccc--cccccchhhhhhc
Confidence            3467999999999998887543 334557899999999999999988742110    01111111  00000        


Q ss_pred             -------------CCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCC
Q 010799          389 -------------DFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQ  453 (501)
Q Consensus       389 -------------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~  453 (501)
                                   .....................       ....-......+.-++|||+++.  ...+..+...+.. 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~-  157 (252)
T d1sxje2          86 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-------DFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK-  157 (252)
T ss_dssp             ECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH-
T ss_pred             cCCccceeeecccccCCcceeeehhhhhhhhhhh-------hhhhcccccCCCceEEEeccccccccccchhhhccccc-
Confidence                         000111111111111111000       00000111122345888999987  3445555555555 


Q ss_pred             CCCCCCEEEEEeCChH-HHhhcCCCCcceeCCCCChHHHHHHHHHh
Q 010799          454 ASPIGSRVILITREAY-VARSFSPSIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       454 ~~~~~~~iIiTtR~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                       ....+++|+||.+.. +.....+....+++.+++.++..+++.+.
T Consensus       158 -~~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i  202 (252)
T d1sxje2         158 -YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDV  202 (252)
T ss_dssp             -STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred             -ccccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHH
Confidence             455677777776542 22211113357899999999999888654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.60  E-value=3e-08  Score=89.82  Aligned_cols=155  Identities=16%  Similarity=0.205  Sum_probs=92.3

Q ss_pred             ccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc-CCccceeEEEEeCCCCChHHHHHHHH
Q 010799          322 VTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK-NFPCRAWANVYVSQDFDMRSVFADIL  400 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~-~f~~~~w~~v~~~~~~~~~~~~~~i~  400 (501)
                      ..+++|.++.++.|..++...  +.+.+.|+|++|+|||++|+.+++  .... .+..... +++++...+... .....
T Consensus        23 ~~diig~~~~~~~l~~~i~~~--~~~~lll~Gp~G~GKTtla~~iak--~l~~~~~~~~~~-e~n~s~~~~~~~-~~~~~   96 (231)
T d1iqpa2          23 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFL-ELNASDERGINV-IREKV   96 (231)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEE-EEETTCHHHHHT-THHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHH--HHHhcccCCCee-EEecCcccchhH-HHHHH
Confidence            467999999999999999653  446688999999999999999988  3322 1221111 133332111111 11111


Q ss_pred             HHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCC
Q 010799          401 RQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPS  477 (501)
Q Consensus       401 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~  477 (501)
                      ......               ......++.++++|+++.  ...+..+...+..  ......+|.||... .+...+.+.
T Consensus        97 ~~~~~~---------------~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~--~~~~~~~i~~~n~~~~i~~~l~sR  159 (231)
T d1iqpa2          97 KEFART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQSR  159 (231)
T ss_dssp             HHHHHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHHT
T ss_pred             HHHHhh---------------hhccCCCceEEeehhhhhcchhHHHHHhhhccc--CCcceEEEeccCChhhchHhHhCc
Confidence            111000               001123567899999875  4555666666655  34455666665443 332222224


Q ss_pred             CcceeCCCCChHHHHHHHHHhh
Q 010799          478 IFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       478 ~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.+.+.+.++..+.+.+.+
T Consensus       160 ~~~i~~~~~~~~~~~~~l~~~~  181 (231)
T d1iqpa2         160 CAIFRFRPLRDEDIAKRLRYIA  181 (231)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHHH
Confidence            5689999999999988887654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=4.3e-07  Score=82.70  Aligned_cols=156  Identities=13%  Similarity=0.095  Sum_probs=89.0

Q ss_pred             cccceeecchhHHHHHHHh---hc-------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          321 EVTAVVSMENDILKLAKLT---LN-------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L---~~-------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..++++|-++..+.|.+.+   ..       +...++.+.++|++|+|||+||+.+++  ....+|   +-  ++++   
T Consensus         7 ~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~--~~~~~~---~~--i~~~---   76 (247)
T d1ixza_           7 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPF---IT--ASGS---   76 (247)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH--HTTCCE---EE--EEHH---
T ss_pred             cHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHH--HcCCCE---EE--EEhH---
Confidence            4578999998877765543   11       223456799999999999999999998  333222   11  3221   


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh----------------hhHHHHHHhcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP----------------GAWYDLKRIFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~----------------~~~~~l~~~l~~~~  454 (501)
                             ++...    ..  ..+...+.+.+...-...+++|+|||++..                ..+..|+..+....
T Consensus        77 -------~l~~~----~~--g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~  143 (247)
T d1ixza_          77 -------DFVEM----FV--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE  143 (247)
T ss_dssp             -------HHHHS----CT--THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred             -------Hhhhc----cc--cHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCC
Confidence                   11111    10  112222333333444567899999998631                11333444333310


Q ss_pred             CCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.-||-||.... +...+.   .-...+.+++++.++..++|...+
T Consensus       144 ~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l  192 (247)
T d1ixza_         144 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA  192 (247)
T ss_dssp             TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHh
Confidence            223333344665433 333331   134689999999999999998765

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=3.7e-07  Score=83.87  Aligned_cols=155  Identities=11%  Similarity=0.087  Sum_probs=92.3

Q ss_pred             ccceeecchhHHHHHHHhhc-----------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTLN-----------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..+++|-++..++|.+.+..           +-..++-+.++|++|+|||++|+.+++  ....+|   +.  ++.+.  
T Consensus         3 ~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~--~~~~~~---~~--i~~~~--   73 (258)
T d1e32a2           3 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FL--INGPE--   73 (258)
T ss_dssp             GGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHH--HTTCEE---EE--ECHHH--
T ss_pred             hhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHH--HhCCeE---EE--EEchh--
Confidence            35689999999998886421           224457899999999999999999988  333322   11  22111  


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh-------------hHHHHHHhcCCCCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG-------------AWYDLKRIFSPQASPI  457 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~-------------~~~~l~~~l~~~~~~~  457 (501)
                                  +.....  ......+...+...-...+++|+|||++...             ....+...+.......
T Consensus        74 ------------l~~~~~--g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (258)
T d1e32a2          74 ------------IMSKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA  139 (258)
T ss_dssp             ------------HTTSCT--THHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSS
T ss_pred             ------------hccccc--ccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccC
Confidence                        111100  1112233333444445678999999998621             1222333222211344


Q ss_pred             CCEEEEEeCChH-HHhhcCC---CCcceeCCCCChHHHHHHHHHhh
Q 010799          458 GSRVILITREAY-VARSFSP---SIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       458 ~~~iIiTtR~~~-~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +.-||.||.... +...+.+   -...+.++.++.++-.++|....
T Consensus       140 ~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l  185 (258)
T d1e32a2         140 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT  185 (258)
T ss_dssp             CEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTT
T ss_pred             CccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhc
Confidence            555566886654 2222221   45799999999999999998664

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.48  E-value=7.8e-07  Score=86.04  Aligned_cols=153  Identities=14%  Similarity=0.150  Sum_probs=89.6

Q ss_pred             cceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccc---ccccCC-ccceeEEEEeCCCCChHHHHHH
Q 010799          323 TAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESS---YTKKNF-PCRAWANVYVSQDFDMRSVFAD  398 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~---~~~~~f-~~~~w~~v~~~~~~~~~~~~~~  398 (501)
                      +.++||+++++++...|.....  ..+.++|++|||||+|+..++...   ++-... +..+| .++++.      ++. 
T Consensus        22 d~~~gr~~ei~~~~~~L~r~~k--~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~-~ld~~~------l~a-   91 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRRTK--NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV-SLQMGS------LLA-   91 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSC--CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE-EECC------------
T ss_pred             CCCcCcHHHHHHHHHHHhcCCC--CCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEE-EeeHhh------hhc-
Confidence            4589999999999999975433  345677999999999887776521   222222 34555 022221      100 


Q ss_pred             HHHHhccCCCCCCCCHHHHHHHHHHhc-CC-ceEEEEEcCCCCh----------hhHHHHHHhcCCCCCCCCCEEEEEeC
Q 010799          399 ILRQLTQDEVDEESSLDDLESEFTGIL-YE-KRYLVVLDDVHSP----------GAWYDLKRIFSPQASPIGSRVILITR  466 (501)
Q Consensus       399 i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~-~r~LlVlDnv~~~----------~~~~~l~~~l~~~~~~~~~~iIiTtR  466 (501)
                            +..  .....++.+..+...+ .. .+++|++|++...          +..+.|.++|..    ...++|-||.
T Consensus        92 ------g~~--~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r----g~~~~I~~tT  159 (387)
T d1qvra2          92 ------GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR----GELRLIGATT  159 (387)
T ss_dssp             --------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT----TCCCEEEEEC
T ss_pred             ------ccC--cchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC----CCcceeeecC
Confidence                  000  0123344444443333 33 3799999998762          223455556655    3467787777


Q ss_pred             ChHHHhhcCC------CCcceeCCCCChHHHHHHHHHh
Q 010799          467 EAYVARSFSP------SIFLHQLRPLNEEESGKLFQRR  498 (501)
Q Consensus       467 ~~~~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~  498 (501)
                      ...... +..      ....+.|++++.+++..++...
T Consensus       160 ~~ey~~-~e~d~al~rrF~~v~v~ep~~~~~~~il~~~  196 (387)
T d1qvra2         160 LDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGL  196 (387)
T ss_dssp             HHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHH-hcccHHHHHhcccccCCCCcHHHHHHHHHHH
Confidence            666543 332      5679999999999999998754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=6.6e-07  Score=81.78  Aligned_cols=155  Identities=13%  Similarity=0.077  Sum_probs=92.2

Q ss_pred             ccceeecchhHHHHHHHh---hc-------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCC
Q 010799          322 VTAVVSMENDILKLAKLT---LN-------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFD  391 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L---~~-------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~  391 (501)
                      ..+++|.++..++|.+.+   ..       +...++.+.++|++|+|||++|+.+++  ....+|   +-  ++.+.-.+
T Consensus        11 ~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~--~~~~~~---~~--i~~~~l~~   83 (256)
T d1lv7a_          11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FT--ISGSDFVE   83 (256)
T ss_dssp             GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCCE---EE--ECSCSSTT
T ss_pred             HHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHH--HcCCCE---EE--EEhHHhhh
Confidence            468999999888886654   11       123457899999999999999999998  333222   11  22221111


Q ss_pred             hHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh------------hh----HHHHHHhcCCCCC
Q 010799          392 MRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP------------GA----WYDLKRIFSPQAS  455 (501)
Q Consensus       392 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~~----~~~l~~~l~~~~~  455 (501)
                                    ..  ...+...+.+.+...-...+++|+|||++..            ..    +..++..+.....
T Consensus        84 --------------~~--~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~  147 (256)
T d1lv7a_          84 --------------MF--VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG  147 (256)
T ss_dssp             --------------SC--CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred             --------------cc--hhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence                          00  1223444445555555677899999998531            11    2334444432112


Q ss_pred             CCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          456 PIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       456 ~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ..+.-+|-||.... +...+.   .-...+.+++++.++-.++|....
T Consensus       148 ~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l  195 (256)
T d1lv7a_         148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM  195 (256)
T ss_dssp             SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhc
Confidence            33445555776543 323332   135789999999999999987654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=2.4e-07  Score=84.84  Aligned_cols=164  Identities=15%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             cccceeecchhHHHHHHHhhc---------------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEE
Q 010799          321 EVTAVVSMENDILKLAKLTLN---------------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVY  385 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~---------------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~  385 (501)
                      ...+++|.+..+++|..++..               +....+.+.++|++|+|||++|+.+++  ....   ...+  ++
T Consensus        12 ~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~--~~~~---~~~~--~~   84 (253)
T d1sxja2          12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--ELGY---DILE--QN   84 (253)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HTTC---EEEE--EC
T ss_pred             CHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHH--HHHh---hhhc--cc
Confidence            357899999999999998843               123446899999999999999999998  3221   1234  55


Q ss_pred             eCCCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCE
Q 010799          386 VSQDFDMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHS-----PGAWYDLKRIFSPQASPIGSR  460 (501)
Q Consensus       386 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~  460 (501)
                      .+...+...+ ............... ..  ...........+..++++|+++.     ...+..+......   . ...
T Consensus        85 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~---~-~~~  156 (253)
T d1sxja2          85 ASDVRSKTLL-NAGVKNALDNMSVVG-YF--KHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK---T-STP  156 (253)
T ss_dssp             TTSCCCHHHH-HHTGGGGTTBCCSTT-TT--TC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH---C-SSC
T ss_pred             cccchhhHHH-HHHHHHHhhcchhhh-hh--hhhhhcccccccceEEEeeeccccccchhhhhHHHhhhhcc---c-ccc
Confidence            4443333322 222222221111000 00  00111122334567888999764     2223344433222   1 223


Q ss_pred             EEEEeC--ChHHHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          461 VILITR--EAYVARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       461 iIiTtR--~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +++|+.  .........+....+.+.+++.++-.+.+.+.+
T Consensus       157 ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~  197 (253)
T d1sxja2         157 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIA  197 (253)
T ss_dssp             EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccceeeeeeccccchhHHHHHHHHHH
Confidence            444432  222222333356789999999999888877643

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=2.2e-06  Score=75.75  Aligned_cols=158  Identities=17%  Similarity=0.142  Sum_probs=92.1

Q ss_pred             chhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccC--
Q 010799          329 ENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQD--  406 (501)
Q Consensus       329 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~--  406 (501)
                      +...++|.+.+..+ .-++.+.++|++|+|||++|+.+++...-.... .  +  -.+...    .....+.......  
T Consensus         8 ~~~~~~l~~~~~~~-~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~-~--~--~~~~~~----~~~~~i~~~~~~~~~   77 (207)
T d1a5ta2           8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQ-G--H--KSCGHC----RGCQLMQAGTHPDYY   77 (207)
T ss_dssp             HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCB-T--T--BCCSCS----HHHHHHHHTCCTTEE
T ss_pred             HHHHHHHHHHHHcC-CcCeEEEEECCCCCcHHHHHHHHHHhccccccc-c--c--cccccc----chhhhhhhccccccc
Confidence            45577777777543 334679999999999999999887732111100 0  0  000000    0111111111100  


Q ss_pred             -----CCCCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCChH-HHhh
Q 010799          407 -----EVDEESSLDDLESEFTGILY-----EKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREAY-VARS  473 (501)
Q Consensus       407 -----~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~-~~~~  473 (501)
                           ........+.+ ..+.+.+.     +++-++|+|+++.  ...++.|+..+-.  .+.++.+|+||++.. +...
T Consensus        78 ~~~~~~~~~~i~~~~i-r~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEe--p~~~~~fIl~t~~~~~ll~t  154 (207)
T d1a5ta2          78 TLAPEKGKNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE--PPAETWFFLATREPERLLAT  154 (207)
T ss_dssp             EECCCTTCSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHH
T ss_pred             hhhhhhcccccccchh-hHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHh--hcccceeeeeecChhhhhhh
Confidence                 00001122222 22333322     3567999999986  4567888888888  677888888877753 4444


Q ss_pred             cCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          474 FSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       474 ~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      +.+.-..+.+.+++.++....+.+..
T Consensus       155 I~SRc~~i~~~~~~~~~~~~~L~~~~  180 (207)
T d1a5ta2         155 LRSRCRLHYLAPPPEQYAVTWLSREV  180 (207)
T ss_dssp             HHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred             hcceeEEEecCCCCHHHHHHHHHHcC
Confidence            43356799999999999998887653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=8e-07  Score=81.87  Aligned_cols=155  Identities=15%  Similarity=0.112  Sum_probs=90.4

Q ss_pred             ccceeecchhHHHHHHHhh----c-------CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC
Q 010799          322 VTAVVSMENDILKLAKLTL----N-------SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF  390 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~----~-------~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~  390 (501)
                      ..+++|-++..++|.+.+.    .       +-...+.+.++|++|+|||+||+.++.  ....+|       +.++   
T Consensus         6 f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~--~~~~~~-------~~~~---   73 (265)
T d1r7ra3           6 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-------ISIK---   73 (265)
T ss_dssp             CSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHH--HTTCEE-------EEEC---
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHH--HhCCcE-------EEEE---
Confidence            4568888888777766542    1       223456899999999999999999998  443332       3332   


Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChh----------------hHHHHHHhcCCCC
Q 010799          391 DMRSVFADILRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSPG----------------AWYDLKRIFSPQA  454 (501)
Q Consensus       391 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~----------------~~~~l~~~l~~~~  454 (501)
                       ..+    +.    ...  .......+...+...-...+++|+|||++...                ....++..+....
T Consensus        74 -~~~----l~----~~~--~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~  142 (265)
T d1r7ra3          74 -GPE----LL----TMW--FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS  142 (265)
T ss_dssp             -HHH----HH----TSC--TTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred             -HHH----hh----hcc--ccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcC
Confidence             111    11    111  11223333344444444678999999997410                1234444454311


Q ss_pred             CCCCCEEEEEeCChH-HHhhcC---CCCcceeCCCCChHHHHHHHHHhh
Q 010799          455 SPIGSRVILITREAY-VARSFS---PSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       455 ~~~~~~iIiTtR~~~-~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                      ...+.-+|.||.... +...+.   .....+++++++.++-.++|...+
T Consensus       143 ~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l  191 (265)
T d1r7ra3         143 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL  191 (265)
T ss_dssp             ---CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHT
T ss_pred             CCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHh
Confidence            233455566766543 323322   145689999999999999998664

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=2.5e-06  Score=77.09  Aligned_cols=48  Identities=25%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             cccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++++|.+..+++|..++..   .....+.+.++||+|+|||++|+.+++
T Consensus         7 ~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2           7 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             cHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHh
Confidence            357899999999999988843   233446788999999999999999988

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.20  E-value=7e-06  Score=75.23  Aligned_cols=111  Identities=11%  Similarity=0.034  Sum_probs=76.9

Q ss_pred             ccccccchhhHHHHHHHHhc----CCCCeeEEEEEeeCChhhHHHHhhhhcccccccccc-eeEEEEcCCCCCHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIR----SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQ-CRAWVPVPEELERRELVTD  206 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~----~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~~  206 (501)
                      +..++||+.+.+.|.++|..    .....+.+.|+|++|+||||+|+.+.+.-  .+.+. ..+|+..........+...
T Consensus        15 p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~   92 (276)
T d1fnna2          15 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGE   92 (276)
T ss_dssp             CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHH--hcccCCcEEEecchhhhhhhhhhhh
Confidence            34689999999999999864    23456788999999999999999998543  23332 2356667777788888898


Q ss_pred             HHHHhcCCCCcCc---chHHHHHHHHcc--CCeEEEEEecCCC
Q 010799          207 ILKQVGGSKVEKQ---LDPQKKLRKLFT--ENRYLVVIINART  244 (501)
Q Consensus       207 i~~~~~~~~~~~~---~~~~~~l~~~l~--~kr~LlVlDdv~~  244 (501)
                      +...+........   ......+.+.+.  ....++++|++.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  135 (276)
T d1fnna2          93 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFN  135 (276)
T ss_dssp             HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGG
T ss_pred             hHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHH
Confidence            8888776543322   223444444443  3456777777654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.17  E-value=1.9e-06  Score=76.40  Aligned_cols=153  Identities=18%  Similarity=0.219  Sum_probs=88.4

Q ss_pred             cce-eecchhH--HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHH
Q 010799          323 TAV-VSMENDI--LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADI  399 (501)
Q Consensus       323 ~~f-vGR~~~~--~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i  399 (501)
                      ++| +|-..++  ..+.++..........+.|||++|+|||.|+..+++  ........+++  ++.      .+....+
T Consensus        10 dnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~--~~~~~~~~~~~--~~~------~~~~~~~   79 (213)
T d1l8qa2          10 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIY--SSA------DDFAQAM   79 (213)
T ss_dssp             SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEE--EEH------HHHHHHH
T ss_pred             hhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHH--HhccCccceEE--ech------HHHHHHH
Confidence            455 4654443  223344433333334588999999999999999999  55555555555  443      3344444


Q ss_pred             HHHhccCCCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCCh---hhHH-HHHHhcCCCCCCCCCEEEEEeCChH------
Q 010799          400 LRQLTQDEVDEESSLDDLESEFTGILYEKRYLVVLDDVHSP---GAWY-DLKRIFSPQASPIGSRVILITREAY------  469 (501)
Q Consensus       400 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~-~l~~~l~~~~~~~~~~iIiTtR~~~------  469 (501)
                      ...+....      .++..+    .+. ..-+|+|||++..   ..|+ .+...+... ...|.+||+||+...      
T Consensus        80 ~~~~~~~~------~~~~~~----~~~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~-~~~~~~iiits~~~p~~l~~~  147 (213)
T d1l8qa2          80 VEHLKKGT------INEFRN----MYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRHPQKLDGV  147 (213)
T ss_dssp             HHHHHHTC------HHHHHH----HHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSCGGGCTTS
T ss_pred             HHHHHccc------hhhHHH----HHh-hccchhhhhhhhhcCchHHHHHHHHHHHHH-hhccceEEEecCCcchhcccc
Confidence            44443221      122222    222 2348999999752   3333 233333321 345889999998543      


Q ss_pred             ---HHhhcCCCCcceeCCCCChHHHHHHHHHhh
Q 010799          470 ---VARSFSPSIFLHQLRPLNEEESGKLFQRRL  499 (501)
Q Consensus       470 ---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~  499 (501)
                         +...+. ...++.++ +++++-.+++++++
T Consensus       148 ~~dL~SRL~-~g~~~~i~-p~d~~~~~iL~~~a  178 (213)
T d1l8qa2         148 SDRLVSRFE-GGILVEIE-LDNKTRFKIIKEKL  178 (213)
T ss_dssp             CHHHHHHHH-TSEEEECC-CCHHHHHHHHHHHH
T ss_pred             chHHHHHhh-CceEEEEC-CCcHHHHHHHHHHH
Confidence               233333 66788886 57888888887765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.17  E-value=3.6e-06  Score=76.34  Aligned_cols=150  Identities=16%  Similarity=0.158  Sum_probs=79.5

Q ss_pred             cceeecchhHHHHHHHhh-------c-CCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHH
Q 010799          323 TAVVSMENDILKLAKLTL-------N-SSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRS  394 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~-------~-~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~  394 (501)
                      ..++|+.+.++.+.+-..       . .....+.|.++|++|+|||++|+.+++  ....+|   +.  ++.+....   
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~--~~~~~~---~~--i~~~~~~~---   78 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE--ESNFPF---IK--ICSPDKMI---   78 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH--HHTCSE---EE--EECGGGCT---
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhh--cccccc---cc--cccccccc---
Confidence            448999988887765542       1 123346799999999999999999998  443333   11  33221100   


Q ss_pred             HHHHHHHHhccCCCCCCCC-HHHHHHHHHHhcCCceEEEEEcCCCCh------------hhHHHHHHhcCCCCCCCCCE-
Q 010799          395 VFADILRQLTQDEVDEESS-LDDLESEFTGILYEKRYLVVLDDVHSP------------GAWYDLKRIFSPQASPIGSR-  460 (501)
Q Consensus       395 ~~~~i~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~r~LlVlDnv~~~------------~~~~~l~~~l~~~~~~~~~~-  460 (501)
                                ...   ..+ ...+.+.+.......+++|+||+++..            ..+..+...+... ...+.+ 
T Consensus        79 ----------g~~---~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~v  144 (246)
T d1d2na_          79 ----------GFS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKA-PPQGRKL  144 (246)
T ss_dssp             ----------TCC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCC-CSTTCEE
T ss_pred             ----------ccc---ccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCC-Cccccce
Confidence                      000   001 111223334444567899999998531            1233444444431 223444 


Q ss_pred             -EEEEeCChHHHhhc--CC-CCcceeCCCCCh-HHHHHHHH
Q 010799          461 -VILITREAYVARSF--SP-SIFLHQLRPLNE-EESGKLFQ  496 (501)
Q Consensus       461 -iIiTtR~~~~~~~~--~~-~~~~~~l~~L~~-~ea~~Lf~  496 (501)
                       ||.||.........  .+ ....+.++.++. ++-.+.+.
T Consensus       145 ~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~  185 (246)
T d1d2na_         145 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALE  185 (246)
T ss_dssp             EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHH
T ss_pred             eeeeccCChhhccchhhcCccceEEecCCchhHHHHHHHHH
Confidence             44477665543322  11 234567765543 34444443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=1.1e-05  Score=72.71  Aligned_cols=48  Identities=21%  Similarity=0.173  Sum_probs=39.6

Q ss_pred             cccceeecchhHHHHHHHhhc---CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLN---SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~---~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++||-++..++|..++..   .....+.+.++||+|+|||++|+.+++
T Consensus         7 ~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2           7 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999888743   223456788999999999999999988

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=2.9e-06  Score=76.39  Aligned_cols=135  Identities=10%  Similarity=0.008  Sum_probs=76.1

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccccc-ccceeEEEEcCCCCCHHHHHHHHHHH
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKE-YFQCRAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~-~F~~~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      -.+++|.++.++.|..++....  .+.+-++|++|+||||+|+.+.+.-.-.. .......+..+.......+...+-..
T Consensus        11 ~~diig~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (237)
T d1sxjd2          11 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF   88 (237)
T ss_dssp             TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHH
Confidence            4679999999999999997653  34477999999999999999975321111 11222334444444444333332222


Q ss_pred             hcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          211 VGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      .........   ...+......+.-++|+|++..  ...+..+...+......+++|+||.+.
T Consensus        89 ~~~~~~~~~---~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~  148 (237)
T d1sxjd2          89 ARLTVSKPS---KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV  148 (237)
T ss_dssp             HHSCCCCCC---TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             hhhhhhhhh---HHHHhhccccCceEEEEecccccCHHHHHHHhhcccccccccccccccccc
Confidence            111111111   1223333444555789998753  444555544444445566777766543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=6.5e-06  Score=73.61  Aligned_cols=125  Identities=11%  Similarity=0.095  Sum_probs=71.0

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV  211 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~  211 (501)
                      -.+++|.++.++.|.+|+....  .+.+-++|++|+||||+|+.+.+.-..........-...+...+............
T Consensus        13 ~~divg~~~~~~~L~~~i~~~~--~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~   90 (227)
T d1sxjc2          13 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA   90 (227)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhcc
Confidence            4679999999999999998653  33356899999999999999985321111111222223333333332221111111


Q ss_pred             cCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          212 GGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       212 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      ...             ....+++-.+|+|++..  ...-..+...+......++++++|.+.
T Consensus        91 ~~~-------------~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~  139 (227)
T d1sxjc2          91 STR-------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA  139 (227)
T ss_dssp             HBC-------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             ccc-------------cccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcH
Confidence            100             01123445788899854  333344555554455677888777643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=1.1e-05  Score=72.01  Aligned_cols=126  Identities=10%  Similarity=0.038  Sum_probs=70.5

Q ss_pred             cccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccce-eEEEEcCCCCCHHHHHHHHHH
Q 010799          131 KKTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQC-RAWVPVPEELERRELVTDILK  209 (501)
Q Consensus       131 ~~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~-~~wv~vs~~~~~~~l~~~i~~  209 (501)
                      ...+++|.++.++.|.+|+....  .+.+-++|++|+||||+|+.+.+.-.. +.+.. ..-+..+...+...+...+..
T Consensus        13 ~~~d~ig~~~~~~~L~~~~~~~~--~~~~ll~Gp~G~GKTt~a~~la~~l~~-~~~~~~~~~~n~~~~~~~~~i~~~~~~   89 (224)
T d1sxjb2          13 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDVVRNQIKH   89 (224)
T ss_dssp             SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHHHHTHHHH
T ss_pred             CHHHhcCCHHHHHHHHHHHHcCC--CCeEEEECCCCCCchhhHHHHHHHHhc-cccccccccccccccCCceehhhHHHH
Confidence            34789999999999999998653  334668999999999999988643111 11111 222333443343333322222


Q ss_pred             HhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEeccc
Q 010799          210 QVGGSKVEKQLDPQKKLRKLFTENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEA  271 (501)
Q Consensus       210 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~  271 (501)
                      -.......            ..++.-++|+|++..  ......++..+......+++++||.+.
T Consensus        90 ~~~~~~~~------------~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~  141 (224)
T d1sxjb2          90 FAQKKLHL------------PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS  141 (224)
T ss_dssp             HHHBCCCC------------CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred             HHHhhccC------------CCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCch
Confidence            21111000            123456788898854  333344444444445566777766543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.91  E-value=6.3e-06  Score=75.71  Aligned_cols=41  Identities=15%  Similarity=0.163  Sum_probs=34.9

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...|+||++++++|.+.      ..+++.|+|.+|+|||+|++.+.+
T Consensus        11 ~~~f~GR~~el~~l~~~------~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          11 RKDFFDREKEIEKLKGL------RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             GGGSCCCHHHHHHHHHT------CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             hhhCCChHHHHHHHHhc------cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            57899999999998763      235788999999999999998874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=2e-05  Score=71.39  Aligned_cols=47  Identities=13%  Similarity=0.029  Sum_probs=36.8

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ..+++|.++..+.|..++.... ...-+-++|++|+||||+|+.+.+.
T Consensus        10 ~~diig~~~~~~~L~~~~~~~~-~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          10 LNALSHNEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             GGGCCSCHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            4679999888888888776543 2334669999999999999998763

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=9.8e-05  Score=67.03  Aligned_cols=123  Identities=17%  Similarity=0.081  Sum_probs=73.8

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc---cccccc-cceeEEEEcCC--------CCCH
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC---ETVKEY-FQCRAWVPVPE--------ELER  200 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~---~~v~~~-F~~~~wv~vs~--------~~~~  200 (501)
                      +.++||+++.++|++.|.....  .-+.+||.+|+|||+|+..+...   .++... .+.++|..-..        .-..
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~k--~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~   95 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF   95 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH
T ss_pred             CcccChHHHHHHHHHHHhcCcc--CCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhH
Confidence            4689999999999999986642  34459999999999887666532   233333 24555542211        1122


Q ss_pred             HHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCCCh----------hHH-HHHhhcCCCCCCCcEEEEEec
Q 010799          201 RELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINARTP----------DIW-DILKYLFPNSSNGSRVILSFQ  269 (501)
Q Consensus       201 ~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~-~~l~~~~~~~~~gs~iivTtr  269 (501)
                      ++.++.+                  +.+.-+.+..++++|++..-          .+. +.|+.++.  ...=++|.||.
T Consensus        96 e~r~~~i------------------~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~--rg~i~vIgatT  155 (268)
T d1r6bx2          96 EKRFKAL------------------LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT  155 (268)
T ss_dssp             HHHHHHH------------------HHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred             HHHHHHH------------------HHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh--CCCCeEEEeCC
Confidence            2222222                  22323457789999996431          123 33444443  23568888888


Q ss_pred             cccchhcc
Q 010799          270 EADAARCR  277 (501)
Q Consensus       270 ~~~va~~~  277 (501)
                      .++..+..
T Consensus       156 ~eey~~~~  163 (268)
T d1r6bx2         156 YQEFSNIF  163 (268)
T ss_dssp             HHHHHCCC
T ss_pred             HHHHHHHH
Confidence            88776543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=6.1e-05  Score=67.69  Aligned_cols=46  Identities=11%  Similarity=-0.052  Sum_probs=37.9

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|.++.++.|.+++..... .+.+-++|.+|+||||+|+.+.+
T Consensus        11 ~~dlig~~~~~~~L~~~i~~~~~-~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          11 FADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             GGGSCSCHHHHHHHHHHHHTTCC-CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHccChHHHHHHHHHHHHcCCC-CeeEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999986532 34567999999999999998764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.81  E-value=3.1e-05  Score=71.12  Aligned_cols=112  Identities=15%  Similarity=0.068  Sum_probs=72.8

Q ss_pred             ccccccchhhHHHHHHHHhc----CC-C-C-eeEEEEEeeCChhhHHHHhhhhccccc----ccccceeEEEEcCCCCCH
Q 010799          132 KTGILDLNKEVNKLADFLIR----SH-S-S-LFTISVVDVAGSVMTTDLWKSYECETV----KEYFQCRAWVPVPEELER  200 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~----~~-~-~-~~vi~I~G~~GvGKTtLa~~v~~~~~v----~~~F~~~~wv~vs~~~~~  200 (501)
                      +..++||+.+.++|.+++..    +. + + ..++.++|++|+||||+++.+.+.-.-    ........++........
T Consensus        15 P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~   94 (287)
T d1w5sa2          15 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL   94 (287)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccch
Confidence            46789999999999987742    11 1 2 334566899999999999999864210    111234456777777778


Q ss_pred             HHHHHHHHHHhcCCCCcC---cchHHHHHHHHc--cCCeEEEEEecCC
Q 010799          201 RELVTDILKQVGGSKVEK---QLDPQKKLRKLF--TENRYLVVIINAR  243 (501)
Q Consensus       201 ~~l~~~i~~~~~~~~~~~---~~~~~~~l~~~l--~~kr~LlVlDdv~  243 (501)
                      ......+...+.......   .......+.+..  .+...++++|.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d  142 (287)
T d1w5sa2          95 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQ  142 (287)
T ss_dssp             HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTH
T ss_pred             hhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEE
Confidence            888888888876544332   222344555544  3456777777763

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.77  E-value=2.2e-05  Score=70.30  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=38.9

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++|.++.++.|.+|+...  +.+.+-++|++|+||||+|+.+.+
T Consensus        23 ~~diig~~~~~~~l~~~i~~~--~~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          23 LDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHH
Confidence            468999999999999999865  345577999999999999998875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=2.7e-05  Score=70.59  Aligned_cols=106  Identities=8%  Similarity=-0.041  Sum_probs=61.6

Q ss_pred             ccccccchhhHHHHHHHHhc---------------CCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCC
Q 010799          132 KTGILDLNKEVNKLADFLIR---------------SHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPE  196 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~---------------~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~  196 (501)
                      -.+++|.+..+++|.+||..               .....+.+-++|++|+||||+|+.+.+...     -...++..+.
T Consensus        13 ~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~-----~~~~~~~~~~   87 (253)
T d1sxja2          13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASD   87 (253)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTS
T ss_pred             HHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHH-----hhhhcccccc
Confidence            46899999999999999853               122456788999999999999999985322     1234555555


Q ss_pred             CCCHHHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeEEEEEecCC
Q 010799          197 ELERRELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRYLVVIINAR  243 (501)
Q Consensus       197 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~  243 (501)
                      ..+...+- ..+.......................++..++++|++.
T Consensus        88 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~  133 (253)
T d1sxja2          88 VRSKTLLN-AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD  133 (253)
T ss_dssp             CCCHHHHH-HTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGG
T ss_pred             chhhHHHH-HHHHHHhhcchhhhhhhhhhhcccccccceEEEeeecc
Confidence            54444332 22222221111100000111222345677788888864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.70  E-value=5.1e-05  Score=72.96  Aligned_cols=128  Identities=11%  Similarity=0.099  Sum_probs=66.4

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHH----hhhhcccccccccceeEEEEcCCCCCHHHHHHHHH
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDL----WKSYECETVKEYFQCRAWVPVPEELERRELVTDIL  208 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa----~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~  208 (501)
                      +.++||+.+++++++.|.....+  -+.+||.+|||||+|+    +.+.+..--....+.++|..-...     ++..  
T Consensus        22 d~~~gr~~ei~~~~~~L~r~~k~--n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~-----l~ag--   92 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRRTKN--NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS-----LLAG--   92 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCC--CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred             CCCcCcHHHHHHHHHHHhcCCCC--CCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh-----hhcc--
Confidence            45899999999999999865432  2367899999999966    555543222233466666533221     1100  


Q ss_pred             HHhcCCCCcCcch-HHHHHHHHcc-CCeEEEEEecCCCh----------hHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          209 KQVGGSKVEKQLD-PQKKLRKLFT-ENRYLVVIINARTP----------DIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       209 ~~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                        ..  ......+ +...+.+... ...++|++|++...          +.-+.|+.+|..+  .-++|-+|-.++..+
T Consensus        93 --~~--~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg--~~~~I~~tT~~ey~~  165 (387)
T d1qvra2          93 --AK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATTLDEYRE  165 (387)
T ss_dssp             ---------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEECHHHHHH
T ss_pred             --cC--cchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCC--CcceeeecCHHHHHH
Confidence              00  0001111 1222223223 34789999998532          1124445555432  346777776666654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=0.00016  Score=62.74  Aligned_cols=131  Identities=15%  Similarity=0.136  Sum_probs=78.4

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCc---cceeEEEEeCCCC-ChHHHHHHHHHHhccC
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFP---CRAWANVYVSQDF-DMRSVFADILRQLTQD  406 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~---~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~  406 (501)
                      +++.|.+++..  ...+.+.++|++|+|||++|..+.+  .+...+.   ...+  +...... .. +-.+++...+...
T Consensus         2 ~~~~l~~~i~~--~~~~~~l~~G~~g~gk~~~a~~l~~--~i~~~~~~h~D~~~--i~~~~~~I~I-d~IR~i~~~~~~~   74 (198)
T d2gnoa2           2 QLETLKRIIEK--SEGISILINGEDLSYPREVSLELPE--YVEKFPPKASDVLE--IDPEGENIGI-DDIRTIKDFLNYS   74 (198)
T ss_dssp             HHHHHHHHHHT--CSSEEEEEECSSSSHHHHHHHHHHH--HHHTSCCCTTTEEE--ECCSSSCBCH-HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHH--HHhccccCCCCEEE--EeCCcCCCCH-HHHHHHHHHHhhC
Confidence            56677777753  3568999999999999999999887  3322211   1223  2211110 11 2222333333222


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--hhhHHHHHHhcCCCCCCCCCEEEEEeCCh-HHHhhcCCCCcceeC
Q 010799          407 EVDEESSLDDLESEFTGILYEKRYLVVLDDVHS--PGAWYDLKRIFSPQASPIGSRVILITREA-YVARSFSPSIFLHQL  483 (501)
Q Consensus       407 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~--~~~~~~l~~~l~~~~~~~~~~iIiTtR~~-~~~~~~~~~~~~~~l  483 (501)
                      ..                 .+++-++|+|+++.  ...++.|+..+-.  .+.++..|++|.+. .+...+.+.-..+.+
T Consensus        75 ~~-----------------~~~~KviIId~ad~l~~~aqNaLLK~LEE--Pp~~t~fiLit~~~~~ll~TI~SRC~~i~~  135 (198)
T d2gnoa2          75 PE-----------------LYTRKYVIVHDCERMTQQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKSRVFRVVV  135 (198)
T ss_dssp             CS-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred             cc-----------------cCCCEEEEEeCccccchhhhhHHHHHHhC--CCCCceeeeccCChhhCHHHHhcceEEEeC
Confidence            11                 13456899999986  5677888888887  66778877777664 344444434456777


Q ss_pred             CCCC
Q 010799          484 RPLN  487 (501)
Q Consensus       484 ~~L~  487 (501)
                      .+.+
T Consensus       136 ~~p~  139 (198)
T d2gnoa2         136 NVPK  139 (198)
T ss_dssp             CCCH
T ss_pred             CCch
Confidence            6544

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=6.2e-05  Score=64.64  Aligned_cols=129  Identities=14%  Similarity=0.064  Sum_probs=72.5

Q ss_pred             cccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc---cccccc-cceeEEEEcCCCCCHHHHHHHHH
Q 010799          133 TGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC---ETVKEY-FQCRAWVPVPEELERRELVTDIL  208 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~---~~v~~~-F~~~~wv~vs~~~~~~~l~~~i~  208 (501)
                      +.++||+++++++++.|.....  .-+.+||.+|+|||+++..+...   .++-.. -+.++|.-     |...++..  
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k--~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l-----d~~~LiAg--   92 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-----DMGALVAG--   92 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-----CHHHHHTT--
T ss_pred             CCCcCcHHHHHHHHHHHhccCC--CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEe-----eHHHHhcc--
Confidence            4679999999999999997542  34578999999999987666531   233222 34555542     33322210  


Q ss_pred             HHhcCCCCcCcch-HHHHHHHHcc-CCeEEEEEecCCCh----------hHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799          209 KQVGGSKVEKQLD-PQKKLRKLFT-ENRYLVVIINARTP----------DIWDILKYLFPNSSNGSRVILSFQEADAARC  276 (501)
Q Consensus       209 ~~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTtr~~~va~~  276 (501)
                          ........+ +...+.+..+ ..+.+|++|++...          +.-+.|+.++..  ..-++|.||..++..++
T Consensus        93 ----~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r--g~l~~IgatT~eey~~~  166 (195)
T d1jbka_          93 ----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQY  166 (195)
T ss_dssp             ----TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHH
T ss_pred             ----CCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC--CCceEEecCCHHHHHHH
Confidence                000000111 2233333333 35799999997421          112344444432  24568888777666553

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.58  E-value=0.00024  Score=63.87  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=36.7

Q ss_pred             ceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          324 AVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       324 ~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +|||....++++.+.+..-.....-|.|+|..|+|||++|+.+..
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            489999999999888865333334678999999999999999865

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.29  E-value=2.1e-05  Score=67.07  Aligned_cols=67  Identities=13%  Similarity=0.176  Sum_probs=39.1

Q ss_pred             HHHHhcCCceEEEEEcCCCC-----hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc---CC--CCcceeCCCCChH
Q 010799          420 EFTGILYEKRYLVVLDDVHS-----PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF---SP--SIFLHQLRPLNEE  489 (501)
Q Consensus       420 ~l~~~l~~~r~LlVlDnv~~-----~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~---~~--~~~~~~l~~L~~~  489 (501)
                      .+...+..++-++++|++..     ...+..+...+..    .+..+|+|+........+   ..  ...++.+..-+.+
T Consensus        91 ~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~----~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~nrd  166 (178)
T d1ye8a1          91 AYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRD  166 (178)
T ss_dssp             HHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTT
T ss_pred             HHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhcc----CCCEEEEEEccHHHHHhhceEEEEeCCEEEEECCccHH
Confidence            34444456788999999754     2334555555544    466788887665322211   11  5667778776654


Q ss_pred             H
Q 010799          490 E  490 (501)
Q Consensus       490 e  490 (501)
                      .
T Consensus       167 ~  167 (178)
T d1ye8a1         167 V  167 (178)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.00066  Score=63.23  Aligned_cols=46  Identities=26%  Similarity=0.310  Sum_probs=35.3

Q ss_pred             cceeecchhHHHHHHHhhc------CCCCc-eEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLN------SSDKN-FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~------~~~~~-~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++|.++.++.+...+..      ...++ .++.++|++|+|||.+|+.++.
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHH
Confidence            4689999999988776531      12223 3788999999999999999887

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.26  E-value=0.00017  Score=63.48  Aligned_cols=122  Identities=11%  Similarity=0.061  Sum_probs=68.9

Q ss_pred             ccccchhhH-HH-HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 010799          134 GILDLNKEV-NK-LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQV  211 (501)
Q Consensus       134 ~~vg~~~~~-~~-l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~  211 (501)
                      -++|-.... -. +.++..........+-|+|.+|+|||.|++.+++...  ......+++      +..++...+...+
T Consensus        12 F~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~   83 (213)
T d1l8qa2          12 FIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYS------SADDFAQAMVEHL   83 (213)
T ss_dssp             CCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEE------EHHHHHHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhc--cCccceEEe------chHHHHHHHHHHH
Confidence            355653332 23 3333333333344577999999999999999997533  333334444      4556666666555


Q ss_pred             cCCCCcCcchHHHHHHHHccCCeEEEEEecCCC---hhHHHHHhhcCCC--CCCCcEEEEEeccc
Q 010799          212 GGSKVEKQLDPQKKLRKLFTENRYLVVIINART---PDIWDILKYLFPN--SSNGSRVILSFQEA  271 (501)
Q Consensus       212 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~~~~--~~~gs~iivTtr~~  271 (501)
                      ....       ...+.+.+++ --+|+|||+..   ...|+.....+-+  ...|..||+|++..
T Consensus        84 ~~~~-------~~~~~~~~~~-~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~  140 (213)
T d1l8qa2          84 KKGT-------INEFRNMYKS-VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH  140 (213)
T ss_dssp             HHTC-------HHHHHHHHHT-CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             Hccc-------hhhHHHHHhh-ccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCc
Confidence            4321       2233334433 45889999853   3456543322221  23577899999753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00063  Score=59.33  Aligned_cols=129  Identities=9%  Similarity=0.040  Sum_probs=65.8

Q ss_pred             chhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhccccc--ccccceeEEEEcCCCCCHHHHHHHHHHHhcC--
Q 010799          138 LNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETV--KEYFQCRAWVPVPEELERRELVTDILKQVGG--  213 (501)
Q Consensus       138 ~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v--~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~--  213 (501)
                      .+...++|.+.+..+. -.+.+-++|.+|+||||+|+.+.+.-.-  ......     .....+...+.......+..  
T Consensus         7 ~~~~~~~l~~~~~~~~-l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~   80 (207)
T d1a5ta2           7 LRPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS-----CGHCRGCQLMQAGTHPDYYTLA   80 (207)
T ss_dssp             GHHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC-----CSCSHHHHHHHHTCCTTEEEEC
T ss_pred             cHHHHHHHHHHHHcCC-cCeEEEEECCCCCcHHHHHHHHHHhccccccccccc-----ccccchhhhhhhccccccchhh
Confidence            3455677777777553 2345788999999999999976542100  000000     00000111111000000000  


Q ss_pred             -CCCcCc--chHHHHHHHHc-----cCCeEEEEEecCCC--hhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799          214 -SKVEKQ--LDPQKKLRKLF-----TENRYLVVIINART--PDIWDILKYLFPNSSNGSRVILSFQEAD  272 (501)
Q Consensus       214 -~~~~~~--~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iivTtr~~~  272 (501)
                       ......  .+....+.+.+     .+++-++|+|++..  .+....|+..+-.-..++.+|+||.+.+
T Consensus        81 ~~~~~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~  149 (207)
T d1a5ta2          81 PEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE  149 (207)
T ss_dssp             CCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred             hhhcccccccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChh
Confidence             000000  01122233332     24667899999864  5557777777766667888888887764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.17  E-value=0.00059  Score=61.82  Aligned_cols=97  Identities=16%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC---
Q 010799          334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD---  409 (501)
Q Consensus       334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~---  409 (501)
                      .|..+|. .+=+.-+++-|+|++|+|||+||..++.  .....=..++|  ++....++..     +++.++.+...   
T Consensus        44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~--~aqk~g~~v~y--iDtE~~~~~~-----~a~~~Gvd~d~i~~  114 (268)
T d1xp8a1          44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAF--IDAEHALDPV-----YARALGVNTDELLV  114 (268)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred             HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHH--HHHhCCCEEEE--EECCccCCHH-----HHHHhCCCchhEEE
Confidence            3444453 2224557999999999999999998877  33333345678  8877666653     56666655432   


Q ss_pred             -CCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC
Q 010799          410 -EESSLDDLESEFTGILYEK-RYLVVLDDVHS  439 (501)
Q Consensus       410 -~~~~~~~~~~~l~~~l~~~-r~LlVlDnv~~  439 (501)
                       +..+.++..+.+..++... .-|||+|.+..
T Consensus       115 ~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~a  146 (268)
T d1xp8a1         115 SQPDNGEQALEIMELLVRSGAIDVVVVDSVAA  146 (268)
T ss_dssp             ECCSSHHHHHHHHHHHHTTTCCSEEEEECTTT
T ss_pred             EcCCCHHHHHHHHHHHHhcCCCcEEEEecccc
Confidence             4567788888888777654 56999999754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.16  E-value=0.00068  Score=60.81  Aligned_cols=47  Identities=21%  Similarity=0.106  Sum_probs=34.1

Q ss_pred             cccccchhhHHHHHHHHh-------cC-CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          133 TGILDLNKEVNKLADFLI-------RS-HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~-------~~-~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+++|..++++.+++-+.       .. ..+.+-|-++|++|+|||+||+.+.+.
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhc
Confidence            568887777766655443       11 224566778999999999999999853

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00097  Score=60.32  Aligned_cols=97  Identities=15%  Similarity=0.134  Sum_probs=66.9

Q ss_pred             HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC---
Q 010799          334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD---  409 (501)
Q Consensus       334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~---  409 (501)
                      .|...|. .+=+.-+++-|+|++|+|||+||..++.  .....-..++|  ++....++...     +++++.+...   
T Consensus        47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~--~~q~~g~~~vy--IDtE~~~~~e~-----a~~~GvD~d~il~  117 (269)
T d1mo6a1          47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAF--IDAEHALDPDY-----AKKLGVDTDSLLV  117 (269)
T ss_dssp             HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHH--HHHHTTCEEEE--EESSCCCCHHH-----HHHHTCCGGGCEE
T ss_pred             HHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHH--HHhcCCCEEEE--EECCccCCHHH-----HHHhCCCHHHeEE
Confidence            3444453 3445668999999999999999988877  44444456788  88877776543     4555544322   


Q ss_pred             -CCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          410 -EESSLDDLESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       410 -~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                       +..+.++..+.+..++.. ..-|||+|.+..
T Consensus       118 ~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~a  149 (269)
T d1mo6a1         118 SQPDTGEQALEIADMLIRSGALDIVVIDSVAA  149 (269)
T ss_dssp             ECCSSHHHHHHHHHHHHHTTCEEEEEEECSTT
T ss_pred             ecCCCHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence             456677888877776655 467999999865

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00089  Score=60.49  Aligned_cols=46  Identities=9%  Similarity=0.008  Sum_probs=35.2

Q ss_pred             cccccchhhHHHHHHHHh----c-------CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLI----R-------SHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~----~-------~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .++.|.++.+++|.+.+.    .       +-...+-+-++|++|+|||+||+.+.+
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHH
Confidence            468899999888877643    1       112345578999999999999999985

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00022  Score=63.76  Aligned_cols=48  Identities=15%  Similarity=0.008  Sum_probs=38.0

Q ss_pred             ccccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -+++||.++.+++|..++...   ....+-+-++|++|+||||+|+.+.+.
T Consensus         8 ~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2           8 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999988888631   223455678999999999999999853

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.00019  Score=64.10  Aligned_cols=48  Identities=15%  Similarity=-0.063  Sum_probs=38.2

Q ss_pred             ccccccchhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          132 KTGILDLNKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -.+++|.+..+++|..++...   +...+-+-++|++|+||||+|+.+.+.
T Consensus         8 ~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2           8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhc
Confidence            467999999999999988632   223445679999999999999999853

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.94  E-value=0.0015  Score=57.71  Aligned_cols=124  Identities=14%  Similarity=0.115  Sum_probs=68.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHccccccc---------------CCccceeEEEEeCC----CC-----------------
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKK---------------NFPCRAWANVYVSQ----DF-----------------  390 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~---------------~f~~~~w~~v~~~~----~~-----------------  390 (501)
                      .+++|.|+.|+|||||.+.+..-.+...               .-..+-+  +.-..    ..                 
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~--v~Q~~~l~~~ltv~enl~~~~~~~~~~~  110 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM--VFQSYAVWPHMTVYENIAFPLKIKKFPK  110 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE--EEC------CCCHHHHHHTTCC--CCCH
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEE--EeechhhcccchHHHHHHHHHHHcCCCH
Confidence            5999999999999999999865211000               0000111  11100    00                 


Q ss_pred             -ChHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCC
Q 010799          391 -DMRSVFADILRQLTQDEVD-----EESSLDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIG  458 (501)
Q Consensus       391 -~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~  458 (501)
                       .......++++.++.....     +.+.-+...-.+.+.|..++-+|++|+--.      ..++..+...+..   ..|
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~---~~g  187 (239)
T d1v43a3         111 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ---KLK  187 (239)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---HHT
T ss_pred             HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHH---hcC
Confidence             1122233445555443221     223334455566777778888999999654      1222233333322   237


Q ss_pred             CEEEEEeCChHHHhhcC
Q 010799          459 SRVILITREAYVARSFS  475 (501)
Q Consensus       459 ~~iIiTtR~~~~~~~~~  475 (501)
                      ..||++|.+...+..++
T Consensus       188 ~tii~vTHd~~~a~~~~  204 (239)
T d1v43a3         188 VTTIYVTHDQVEAMTMG  204 (239)
T ss_dssp             CEEEEEESCHHHHHHHC
T ss_pred             CeEEEEeCCHHHHHHhC
Confidence            88999999988877765

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.90  E-value=0.0035  Score=54.14  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=20.0

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++.+++.++|+.|+||||.+-.++.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4558999999999999986655555

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0002  Score=67.04  Aligned_cols=46  Identities=22%  Similarity=0.204  Sum_probs=36.3

Q ss_pred             cceeecchhHHHHHHHhhc------CCCC-ceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLN------SSDK-NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~------~~~~-~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++|.++.++.+...+..      ..++ ..++.+.|++|+|||.||+.++.
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHh
Confidence            4589999999999776631      1222 34889999999999999999887

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.81  E-value=0.0046  Score=54.23  Aligned_cols=50  Identities=18%  Similarity=0.327  Sum_probs=33.8

Q ss_pred             HHHHHccCCeEEEEEecCCCh-------hHHHHHhhcCCCCCCCcEEEEEeccccchhc
Q 010799          225 KLRKLFTENRYLVVIINARTP-------DIWDILKYLFPNSSNGSRVILSFQEADAARC  276 (501)
Q Consensus       225 ~l~~~l~~kr~LlVlDdv~~~-------~~~~~l~~~~~~~~~gs~iivTtr~~~va~~  276 (501)
                      .+...|-.+.-+|++|...+.       +.|+.|....  ...|..||++|.+.++|+.
T Consensus       155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~--~~~g~tii~vTHd~~~a~~  211 (230)
T d1l2ta_         155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN--EEDGKTVVVVTHDINVARF  211 (230)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCCEEEEECSCHHHHTT
T ss_pred             HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHH--HhhCCEEEEECCCHHHHHh
Confidence            455666677778999998652       2244444322  2458889999999998863

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0012  Score=59.49  Aligned_cols=96  Identities=16%  Similarity=0.148  Sum_probs=62.6

Q ss_pred             HHHHHhh-cCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC---
Q 010799          334 KLAKLTL-NSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD---  409 (501)
Q Consensus       334 ~l~~~L~-~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~---  409 (501)
                      .|..+|. .+=+.-+++-|+|++|+|||+||.+++.  .....-..++|  ++....++..     .++.++.+...   
T Consensus        41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~--~~q~~g~~~vy--idtE~~~~~~-----~a~~~Gvd~d~v~~  111 (263)
T d1u94a1          41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAF--IDAEHALDPI-----YARKLGVDIDNLLC  111 (263)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEE--EESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred             HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHH--HHHcCCCEEEE--EccccccCHH-----HHHHhCCCHHHEEE
Confidence            3444453 2224457999999999999999999887  44444445678  8877666653     34555544322   


Q ss_pred             -CCCCHHHHHHHHHHhcCC-ceEEEEEcCCC
Q 010799          410 -EESSLDDLESEFTGILYE-KRYLVVLDDVH  438 (501)
Q Consensus       410 -~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~  438 (501)
                       +..+.++..+.+...++. ..-|||+|.+.
T Consensus       112 ~~~~~~E~~~~~i~~l~~~~~~~liViDSi~  142 (263)
T d1u94a1         112 SQPDTGEQALEICDALARSGAVDVIVVDSVA  142 (263)
T ss_dssp             ECCSSHHHHHHHHHHHHHHTCCSEEEEECGG
T ss_pred             ecCCCHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence             345667777777666653 34589999984

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0011  Score=58.54  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.++.
T Consensus        27 ei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            5999999999999999998854

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.004  Score=53.81  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          343 SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       343 ~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+.++.++|+.|+||||.+-.++.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35578999999999999986655555

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.72  E-value=0.00093  Score=57.15  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=28.7

Q ss_pred             hhHHHHHHHhhc-CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          330 NDILKLAKLTLN-SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       330 ~~~~~l~~~L~~-~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.++.|.+.+.. ...++-+|+|.|++|+||||||+.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_           5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345555555433 344556899999999999999999877

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.00029  Score=59.78  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=21.4

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++.|+|.|++|+||||||+.+..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999987

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.68  E-value=0.00074  Score=61.16  Aligned_cols=26  Identities=35%  Similarity=0.552  Sum_probs=23.0

Q ss_pred             CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          343 SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       343 ~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.++.|.++|++|+|||+||+.++.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999988

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00028  Score=58.52  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.|.|.|++|+||||+|+.++.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4688889999999999999988

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.64  E-value=0.0021  Score=57.45  Aligned_cols=46  Identities=9%  Similarity=-0.009  Sum_probs=33.5

Q ss_pred             cccccchhhHHHHHHHH---hcC-------CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFL---IRS-------HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L---~~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|.++.+++|.+.+   ...       -...+-+-++|++|+|||+||+.+.+
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHH
Confidence            57899888776655433   211       12345678999999999999999995

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.0062  Score=52.26  Aligned_cols=113  Identities=12%  Similarity=0.022  Sum_probs=66.1

Q ss_pred             HHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccc--cccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcc
Q 010799          143 NKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECET--VKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQL  220 (501)
Q Consensus       143 ~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~--v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~  220 (501)
                      +-|.+++..+  ....+-++|.+|+||||+|..+.+.-.  -..|-|...--.-+......++ +++.+.+.....    
T Consensus         4 ~~l~~~i~~~--~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~I-R~i~~~~~~~~~----   76 (198)
T d2gnoa2           4 ETLKRIIEKS--EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSPE----   76 (198)
T ss_dssp             HHHHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCCS----
T ss_pred             HHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHH-HHHHHHHhhCcc----
Confidence            3344444433  567889999999999999998765321  1223343322111122233333 234444443221    


Q ss_pred             hHHHHHHHHccCCeEEEEEecCC--ChhHHHHHhhcCCCCCCCcEEEEEecccc
Q 010799          221 DPQKKLRKLFTENRYLVVIINAR--TPDIWDILKYLFPNSSNGSRVILSFQEAD  272 (501)
Q Consensus       221 ~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iivTtr~~~  272 (501)
                                .+++=++|+|++.  +.+.++.|+..+-.-..++.+|++|.+.+
T Consensus        77 ----------~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~  120 (198)
T d2gnoa2          77 ----------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWH  120 (198)
T ss_dssp             ----------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred             ----------cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChh
Confidence                      2455588899986  46667777777765566788887776654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.62  E-value=0.0013  Score=61.23  Aligned_cols=46  Identities=11%  Similarity=0.087  Sum_probs=34.4

Q ss_pred             cccccchhhHHHHHHHHhc------C-CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIR------S-HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~------~-~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++|.+..++.+.+.+..      + .....++..+|+.|+|||.||+.+..
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHH
Confidence            3578988888888776542      1 22345788999999999999998863

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00063  Score=56.88  Aligned_cols=26  Identities=23%  Similarity=0.496  Sum_probs=23.4

Q ss_pred             CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          343 SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       343 ~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++..+++.|.|++|+||||+|+.+..
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999887

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.61  E-value=0.0052  Score=53.90  Aligned_cols=57  Identities=16%  Similarity=0.182  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      -+...-.+.+.|..++-+|++|+--.      ..++-.+...+..   ..|..||++|.+..++..
T Consensus       149 GqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~---~~g~tii~vTHd~~~a~~  211 (230)
T d1l2ta_         149 GQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNE---EDGKTVVVVTHDINVARF  211 (230)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEEECSCHHHHTT
T ss_pred             HHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH---hhCCEEEEECCCHHHHHh
Confidence            34445566666777788999999754      1222222233322   458899999999888753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.0063  Score=52.69  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          343 SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       343 ~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+.++.++|+.|+||||.+-.++.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35667999999999999986555554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.60  E-value=0.00046  Score=58.16  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.5

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +..+|.|+|++|+||||+|+.+..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999988

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0005  Score=58.11  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +.|.|+|++|+|||||++.++..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            57999999999999999999874

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.58  E-value=0.0019  Score=57.34  Aligned_cols=99  Identities=19%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCC------
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDE------  407 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~------  407 (501)
                      .|.++|..+=+.-.++.|+|++|+|||++|.+++.  ....+...++|  ++...  +...+.+.. ..+....      
T Consensus        14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~--~~~~~~~~~~~--is~e~--~~~~~~~~~-~~~~~~~~~~~~~   86 (242)
T d1tf7a2          14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVE--NACANKERAIL--FAYEE--SRAQLLRNA-YSWGMDFEEMERQ   86 (242)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEE--EESSS--CHHHHHHHH-HTTSCCHHHHHHT
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH--HHHHhccccce--eeccC--CHHHHHHHH-HHcCCChHHHhhc
Confidence            34455543334557999999999999999999988  45555666677  66533  233322222 2221110      


Q ss_pred             --------CCCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 010799          408 --------VDEESSLDDLESEFTGILYE-KRYLVVLDDVHS  439 (501)
Q Consensus       408 --------~~~~~~~~~~~~~l~~~l~~-~r~LlVlDnv~~  439 (501)
                              ........+....+...+.. +.-++|+|++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~  127 (242)
T d1tf7a2          87 NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSA  127 (242)
T ss_dssp             TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHH
T ss_pred             CceEEEEeecchhhHHHHHHHHHHHHHhcCCceeeeecchh
Confidence                    00233456666666666654 456888998643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0017  Score=58.39  Aligned_cols=46  Identities=9%  Similarity=-0.000  Sum_probs=34.2

Q ss_pred             cccccchhhHHHHHHHH---hcC-------CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFL---IRS-------HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L---~~~-------~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|.++.+++|.+.+   ...       ....+-+-++|++|+|||+||+.+.+
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHH
Confidence            68899988887775543   221       11245677999999999999999985

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.55  E-value=0.00059  Score=57.27  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++|.|.|++|+||||+|+.++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999988

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.55  E-value=0.00058  Score=57.05  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++|.|.|++|+||||+|+.+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.54  E-value=0.002  Score=57.05  Aligned_cols=59  Identities=12%  Similarity=0.193  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      -+...-.+.+.|-.++-+|++|+--.      ..++..+...+..   ..|..||++|.+...+..++
T Consensus       144 GqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~---~~g~tvi~vTHd~~~~~~~~  208 (242)
T d1oxxk2         144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS---RLGVTLLVVSHDPADIFAIA  208 (242)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH---HHCCEEEEEESCHHHHHHHC
T ss_pred             HHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHh---ccCCEEEEEECCHHHHHHhC
Confidence            34455566777778888999999643      2222333333322   23788999999987766654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.53  E-value=0.00062  Score=55.80  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++|.|.|++|+||||+|+++..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.0015  Score=59.19  Aligned_cols=47  Identities=11%  Similarity=-0.050  Sum_probs=34.2

Q ss_pred             ccccccchhhHHHHHHHHh----c-------CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          132 KTGILDLNKEVNKLADFLI----R-------SHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~----~-------~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.++.|.++.+++|.+.+.    .       +-...+-|-++|.+|+|||+||+.+.+
T Consensus         6 f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3           6 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHH
Confidence            3568888877777666543    1       112345677999999999999999984

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.0005  Score=64.04  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             cceeecchhHHHHHHHhhc------------CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          323 TAVVSMENDILKLAKLTLN------------SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       323 ~~fvGR~~~~~~l~~~L~~------------~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.++.++.+...+..            .....+.+.++||+|+|||.||+.+++
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhh
Confidence            4579999999888765521            011346788999999999999999988

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.49  E-value=0.003  Score=55.80  Aligned_cols=59  Identities=12%  Similarity=0.111  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      -+...-.+.+.|..++-+|++|+--.      ...+..+...+..   ..|..||++|.+-..+..++
T Consensus       143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~---~~g~tvi~vTHd~~~~~~~~  207 (240)
T d1g2912         143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR---QLGVTTIYVTHDQVEAMTMG  207 (240)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH---HHTCEEEEEESCHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHh---ccCCEEEEEcCCHHHHHHhC
Confidence            34445566666777888999999654      1222222222222   23889999999988776654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0026  Score=56.25  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=35.8

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +...-.+.+.|..++-+|++|+--.      ..++-.++..+..   ..|..||++|.+-..+..++
T Consensus       145 ~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~---~~g~tvi~vTHdl~~~~~~~  208 (240)
T d3dhwc1         145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR---RLGLTILLITHEMDVVKRIC  208 (240)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHH---HHCCEEEEEBSCHHHHHHHC
T ss_pred             HHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHh---ccCCEEEEEcCCHHHHHHhC
Confidence            3444555666667788999999533      1222222222222   24789999999988877654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.48  E-value=0.00052  Score=58.13  Aligned_cols=23  Identities=13%  Similarity=-0.049  Sum_probs=21.2

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+.|.|.|++|+||||||+.+.+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            68899999999999999999974

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.45  E-value=0.0049  Score=53.21  Aligned_cols=24  Identities=29%  Similarity=0.310  Sum_probs=19.4

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.+++.++|+.|+||||.+..++.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999986665555

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0005  Score=57.40  Aligned_cols=23  Identities=22%  Similarity=0.072  Sum_probs=21.0

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++||+|+|..|+|||||++.+.+
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46999999999999999999974

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00075  Score=56.27  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++++|+|++|+|||||+.++..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999999987

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.40  E-value=0.0038  Score=55.04  Aligned_cols=58  Identities=16%  Similarity=0.204  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC---h---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS---P---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +...-.+.+.+..++-+|++|+--.   .   ..+..+...+..   ..|..||++|.+...+..++
T Consensus       131 ~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~---~~g~tvi~vtHd~~~~~~~a  194 (240)
T d2onka1         131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR---EFDVPILHVTHDLIEAAMLA  194 (240)
T ss_dssp             HHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH---HHTCCEEEEESCHHHHHHHC
T ss_pred             HHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHH---hcCCeEEEEeCCHHHHHHhC
Confidence            4445566677778888999999654   1   222222222221   23778999999877666654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0017  Score=57.62  Aligned_cols=58  Identities=14%  Similarity=0.136  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC---hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhc
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS---PGAWYDLKRIFSPQASPIGSRVILITREAYVARSF  474 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~---~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~  474 (501)
                      +...-.+.+.+-.++-+|+||+.-+   ...-..+...+..  ...+..+|+.|.+......+
T Consensus       144 q~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~--l~~~~Tvi~itH~l~~~~~~  204 (241)
T d2pmka1         144 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK--ICKGRTVIIIAHRLSTVKNA  204 (241)
T ss_dssp             HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH--HHTTSEEEEECSSGGGGTTS
T ss_pred             HHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHH--HhCCCEEEEEECCHHHHHhC
Confidence            3444455566666777999999765   1222223333333  23466788888877766554

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.34  E-value=0.00065  Score=56.78  Aligned_cols=22  Identities=36%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..|+|.|++|+||||+|+.++.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999877

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.34  E-value=0.0012  Score=56.66  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          343 SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       343 ~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++.+|.|.|++|+||||+|+.++.
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35668999999999999999999987

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.30  E-value=0.0014  Score=54.94  Aligned_cols=23  Identities=22%  Similarity=0.533  Sum_probs=21.3

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++|.|.|++|+||||+|+.+..
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999877

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.28  E-value=0.001  Score=55.47  Aligned_cols=21  Identities=14%  Similarity=-0.076  Sum_probs=19.6

Q ss_pred             eEEEEEeeCChhhHHHHhhhh
Q 010799          157 FTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ++|.|.|++|+||||+|+.+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~   23 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLA   23 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999887

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.28  E-value=0.0079  Score=52.56  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=37.2

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +...-.+.+.|-.++-+|++|+--.      ..++..+...+..   ..|..||++|.+...+..++
T Consensus       132 ~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~---~~g~tii~vtHd~~~~~~~~  195 (229)
T d3d31a2         132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK---KNKLTVLHITHDQTEARIMA  195 (229)
T ss_dssp             HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH---HTTCEEEEEESCHHHHHHHC
T ss_pred             HhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHh---cCCcEEEEEcCCHHHHHHhC
Confidence            4445566677778888999999654      1222233333322   34788999999988777654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00075  Score=57.73  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.3

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +..+|.|+|++|+||||+|+.+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346888999999999999999987

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.23  E-value=0.00078  Score=56.28  Aligned_cols=20  Identities=25%  Similarity=0.506  Sum_probs=17.8

Q ss_pred             EEEEecCCCChHHHHHHHHc
Q 010799          349 ISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |++.|++|+||||+++.++.
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45669999999999999988

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0013  Score=55.29  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=22.3

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.+.+|.++|++|+||||+|+.++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5567999999999999999998866

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.18  E-value=0.00094  Score=54.62  Aligned_cols=22  Identities=18%  Similarity=-0.008  Sum_probs=19.4

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++|.|.|++|+||||||+.+..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998863

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.17  E-value=0.0013  Score=56.89  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.2

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.+|.++|.+|+||||+|++++.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999987

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.00071  Score=55.88  Aligned_cols=22  Identities=18%  Similarity=-0.037  Sum_probs=19.6

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +.|.+.|++|+||||+|+.+.+
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4678889999999999999984

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0018  Score=55.59  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.9

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +..++|.|.|++|+||||+|+.++.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999988

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.07  E-value=0.0082  Score=51.53  Aligned_cols=22  Identities=41%  Similarity=0.604  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.++.
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            5899999999999999999876

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.06  E-value=0.002  Score=54.33  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=20.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++|+|.|++|+||||+++.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6999999999999999999887

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.0028  Score=56.12  Aligned_cols=57  Identities=12%  Similarity=0.067  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +...-.+...+..++-+|+||+--.      ..++..+...+.    ..|..||+||.+-..+..++
T Consensus       138 ~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~----~~g~tii~~tH~l~~~~~~~  200 (238)
T d1vpla_         138 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS----QEGLTILVSSHNMLEVEFLC  200 (238)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH----HTTCEEEEEECCHHHHTTTC
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHHhC
Confidence            4444566677777888999999654      122223333332    24789999999988777654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.02  E-value=0.0013  Score=59.02  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++|+|+.|+|||||++.+..
T Consensus        45 e~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            5999999999999999988754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.00  E-value=0.002  Score=53.73  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=21.1

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.-.|.|.|++|+||||+|+.+..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            345789999999999999999887

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.99  E-value=0.0035  Score=57.92  Aligned_cols=26  Identities=35%  Similarity=0.387  Sum_probs=21.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHccccccc
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKK  374 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~  374 (501)
                      .++.++|+||+|||.||+.++.  ....
T Consensus       124 g~~l~~G~pG~GKT~la~ala~--~~~~  149 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGE--ALGG  149 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHH--HHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHH--HhcC
Confidence            4667799999999999999998  5443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.96  E-value=0.0012  Score=55.36  Aligned_cols=23  Identities=17%  Similarity=-0.110  Sum_probs=20.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+|.++|++|+||||+|+.+..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36888999999999999999984

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.95  E-value=0.0012  Score=54.94  Aligned_cols=23  Identities=26%  Similarity=-0.028  Sum_probs=20.8

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++|++|+|..|+|||||+..+..
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHH
Confidence            47999999999999999998874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.95  E-value=0.0067  Score=52.44  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=16.2

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+.++.++|+.|+||||.+-.++.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999976555554

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0054  Score=54.31  Aligned_cols=22  Identities=23%  Similarity=0.007  Sum_probs=20.0

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++|+|..|.|||||++.+..
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.88  E-value=0.0015  Score=54.32  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=18.6

Q ss_pred             EEEEecCCCChHHHHHHHHc
Q 010799          349 ISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |.|.|++|+||||+++.++.
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999988

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.88  E-value=0.0034  Score=53.42  Aligned_cols=26  Identities=12%  Similarity=-0.006  Sum_probs=22.6

Q ss_pred             CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          153 HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       153 ~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+.-+|+|.|.+|+||||||+.+..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999974

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.84  E-value=0.017  Score=52.31  Aligned_cols=22  Identities=36%  Similarity=0.656  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||++.++.
T Consensus        63 e~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhC
Confidence            6899999999999999999876

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.84  E-value=0.0012  Score=55.07  Aligned_cols=22  Identities=18%  Similarity=-0.120  Sum_probs=19.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..|.|.|++|+||||+|+.+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999973

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0054  Score=54.03  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||.+.+..
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5999999999999999998765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0046  Score=57.51  Aligned_cols=36  Identities=17%  Similarity=0.352  Sum_probs=28.5

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++...+...+.+..+|+|+|+||+|||||...+..
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            344444555567789999999999999999988875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.79  E-value=0.0021  Score=55.02  Aligned_cols=24  Identities=17%  Similarity=-0.040  Sum_probs=22.0

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..+|.|+|++|+||||+|+.+.+
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999999984

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.78  E-value=0.032  Score=49.14  Aligned_cols=23  Identities=30%  Similarity=0.588  Sum_probs=20.6

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -..++|+|+.|+|||||++.+..
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36999999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.78  E-value=0.0016  Score=54.66  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|.+.|++|+||||+|+.++.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            466889999999999999987

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.76  E-value=0.0027  Score=60.10  Aligned_cols=42  Identities=24%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             ecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          327 SMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       327 GR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |-+..+.+..+.+..+.+..+.+.++||+|+|||++|..+++
T Consensus       135 ~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         135 KMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             THHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            333444344444445567778999999999999999999998

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.74  E-value=0.0053  Score=54.85  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|+|+.|+|||||++.+..
T Consensus        42 e~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            5899999999999999999864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0021  Score=55.19  Aligned_cols=26  Identities=19%  Similarity=0.038  Sum_probs=23.3

Q ss_pred             CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          153 HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       153 ~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +++.+||.|.|++|+||||+|+.+..
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999999974

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.73  E-value=0.0035  Score=52.96  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++|+|.|++|+||||+++.+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6889999999999999999987

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0025  Score=55.56  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=21.4

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +++|+|.||+|+||||+|+.+..
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999999988

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.69  E-value=0.0018  Score=54.67  Aligned_cols=22  Identities=23%  Similarity=0.140  Sum_probs=20.3

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++|.|.|++|+||||+++.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.67  E-value=0.0051  Score=57.11  Aligned_cols=37  Identities=16%  Similarity=0.394  Sum_probs=29.1

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+|.+.+.....+..+|+|+|+||+|||||..++..
T Consensus        37 ~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          37 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            4445555555567789999999999999999988775

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0061  Score=55.22  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=27.3

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++..+.+.+.  ..+.++|.++|-||+||||+|..++.
T Consensus         7 ~~~~~~~~~~--~~~~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2           7 SLSALVDDIA--RNEHGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             CHHHHHHHHH--TTSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cHHHHHHHhh--cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3555666664  35668999999999999998766654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.64  E-value=0.015  Score=51.25  Aligned_cols=57  Identities=12%  Similarity=0.229  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          415 DDLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       415 ~~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      +...-.+.+.|..++-+|+||+--.      ...+..+...+..    .|..||++|.+-..+..++
T Consensus       144 ~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~----~g~til~~tH~l~~~~~~~  206 (240)
T d1ji0a_         144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ----EGTTILLVEQNALGALKVA  206 (240)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH----TTCCEEEEESCHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHHhC
Confidence            4444555666777888999999654      1222233333433    3788999999876665554

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.63  E-value=0.0035  Score=56.44  Aligned_cols=40  Identities=20%  Similarity=0.091  Sum_probs=27.8

Q ss_pred             hhhHHHHHHHHhcC---CCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          139 NKEVNKLADFLIRS---HSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       139 ~~~~~~l~~~L~~~---~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +....+.++.|...   ....+.|-++|++|+||||||+.+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          12 ENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            33444444445432   23466788999999999999999985

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0016  Score=54.77  Aligned_cols=22  Identities=23%  Similarity=0.110  Sum_probs=19.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +.|.|+|.+|+|||||++.+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999999984

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.59  E-value=0.015  Score=51.94  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=34.7

Q ss_pred             HHHHHHHHhcCCceEEEEEcCCCC------hhhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          416 DLESEFTGILYEKRYLVVLDDVHS------PGAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       416 ~~~~~l~~~l~~~r~LlVlDnv~~------~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      ...-.+.+.|..++-+|++|+--.      ..++-.+...+..    .|..||+.|.+-..+..++
T Consensus       155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~----~g~til~vtHdl~~~~~~a  216 (258)
T d1b0ua_         155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE----EGKTMVVVTHEMGFARHVS  216 (258)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH----TTCCEEEECSCHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc----cCCceEEEeCCHHHHHHhC
Confidence            334455556666778999999654      2222333333433    3677888899887776654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0022  Score=54.66  Aligned_cols=22  Identities=18%  Similarity=-0.017  Sum_probs=19.9

Q ss_pred             eeEEEEEeeCChhhHHHHhhhh
Q 010799          156 LFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      -.+|-++|++|+||||+|+.+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999999997

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.011  Score=52.54  Aligned_cols=62  Identities=16%  Similarity=0.239  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCCh---hhHHHHHHhcCCCCCCCCCEEEEEeCChHHHhhcC
Q 010799          414 LDDLESEFTGILYEKRYLVVLDDVHSP---GAWYDLKRIFSPQASPIGSRVILITREAYVARSFS  475 (501)
Q Consensus       414 ~~~~~~~l~~~l~~~r~LlVlDnv~~~---~~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~~~  475 (501)
                      -+...-.+.+.+-.++-+++||+.-+.   ..-..+...+.......+..+|++|.+......+.
T Consensus       155 GqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aD  219 (251)
T d1jj7a_         155 GQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQAD  219 (251)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCS
T ss_pred             hHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCC
Confidence            344455566666677889999997652   22223334333310123667888888877766543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.55  E-value=0.0026  Score=52.83  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++++|+|..|+|||||+.++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            5899999999999999999987

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0035  Score=53.49  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.+|.|.|++|+||||+|+.++.
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999987

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0028  Score=52.67  Aligned_cols=24  Identities=13%  Similarity=0.022  Sum_probs=21.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+++.|.|++|+||||+|+.+..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            568899999999999999999874

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.50  E-value=0.0028  Score=52.85  Aligned_cols=25  Identities=12%  Similarity=-0.044  Sum_probs=21.3

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++...|.|.|++|+||||+|+.+.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3456788999999999999999974

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.48  E-value=0.0029  Score=52.81  Aligned_cols=23  Identities=13%  Similarity=-0.188  Sum_probs=20.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -++|.|.|++|+||||+|+.+.+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999873

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.003  Score=53.03  Aligned_cols=24  Identities=13%  Similarity=0.037  Sum_probs=21.4

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..+|-++|++|+||||+|+....
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            567999999999999999998864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.42  E-value=0.0024  Score=53.10  Aligned_cols=20  Identities=20%  Similarity=0.061  Sum_probs=17.3

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.++||+|+||||+++.+.+
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            44669999999999999984

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.40  E-value=0.025  Score=50.67  Aligned_cols=110  Identities=15%  Similarity=0.065  Sum_probs=67.7

Q ss_pred             HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCC-CHHHHHHHHHHHhcCCCC----c-
Q 010799          144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEEL-ERRELVTDILKQVGGSKV----E-  217 (501)
Q Consensus       144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~-~~~~l~~~i~~~~~~~~~----~-  217 (501)
                      +.++.|..-..+ .-++|.|-+|+|||+|+..+.++. .+.+=++++++.+.+.. ...++.++..+.--....    . 
T Consensus        57 raID~l~pigkG-Qr~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~t  134 (276)
T d2jdid3          57 KVVDLLAPYAKG-GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV  134 (276)
T ss_dssp             HHHHHHSCEETT-CEEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred             eeeeeeccccCC-CEEEeeCCCCCCHHHHHHHHHHHH-HhhCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceE
Confidence            567777643212 348999999999999998887542 22333567888888774 456777777764211100    0 


Q ss_pred             ------Ccch---------HHHHHHHHcc---CCeEEEEEecCCC-hhHHHHHhhcC
Q 010799          218 ------KQLD---------PQKKLRKLFT---ENRYLVVIINART-PDIWDILKYLF  255 (501)
Q Consensus       218 ------~~~~---------~~~~l~~~l~---~kr~LlVlDdv~~-~~~~~~l~~~~  255 (501)
                            .+..         ..-.+.++++   ++..|+++||+.. ...+.++...+
T Consensus       135 vvv~~~s~~~~~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr~A~A~reis~~~  191 (276)
T d2jdid3         135 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALL  191 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHHHHHHHHHhc
Confidence                  0111         1234556653   7899999999964 34455554443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.37  E-value=0.0073  Score=54.42  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |.|+|+|-||+||||+|..++.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH
Confidence            6899999999999999988777

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.36  E-value=0.0031  Score=54.46  Aligned_cols=23  Identities=17%  Similarity=-0.130  Sum_probs=20.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..+|.++|.+|+||||||+++..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999984

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.35  E-value=0.0025  Score=52.82  Aligned_cols=20  Identities=20%  Similarity=0.061  Sum_probs=18.1

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.++||+|+||||+++.+..
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999984

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.0032  Score=53.54  Aligned_cols=22  Identities=32%  Similarity=0.708  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |.|+|+|++|+|||||++.++.
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999877

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.34  E-value=0.0078  Score=53.76  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|.|+.|+|||||++.++.
T Consensus        31 ei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHC
Confidence            5999999999999999999876

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.31  E-value=0.0035  Score=52.98  Aligned_cols=23  Identities=26%  Similarity=0.083  Sum_probs=20.7

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +++|.|.|++|+||||+++.+..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999973

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.30  E-value=0.011  Score=51.99  Aligned_cols=58  Identities=14%  Similarity=0.146  Sum_probs=36.3

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCC----ccceeEEEEeCCCCC
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNF----PCRAWANVYVSQDFD  391 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f----~~~~w~~v~~~~~~~  391 (501)
                      +..|..+|..+=+.-+++.|+|++|+|||+||.+++........+    ...+|  +......+
T Consensus        20 i~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~--i~~~~~~~   81 (251)
T d1szpa2          20 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY--IDTEGTFR   81 (251)
T ss_dssp             CHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEE--EESSSCCC
T ss_pred             CHHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEE--EeecchHH
Confidence            344555554333445799999999999999999987633222222    23455  66554444

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.27  E-value=0.0049  Score=52.63  Aligned_cols=24  Identities=38%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.++|.|.|++|+||||+|+.++.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347999999999999999999987

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.27  E-value=0.018  Score=51.72  Aligned_cols=82  Identities=11%  Similarity=-0.007  Sum_probs=52.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc-------CcchHHHHHH
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE-------KQLDPQKKLR  227 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~~l~  227 (501)
                      .-+++-|.|.+|+||||||.++.....-.+  -..+|+.....++..     ++++++.+...       ...+..+.+.
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g--~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~  128 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME  128 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCC--CEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHH
Confidence            456899999999999999988875433222  357899998889885     56777765432       1111233344


Q ss_pred             HHccC-CeEEEEEecCC
Q 010799          228 KLFTE-NRYLVVIINAR  243 (501)
Q Consensus       228 ~~l~~-kr~LlVlDdv~  243 (501)
                      ..++. .--|||+|-+-
T Consensus       129 ~l~~~~~~~liIiDSi~  145 (268)
T d1xp8a1         129 LLVRSGAIDVVVVDSVA  145 (268)
T ss_dssp             HHHTTTCCSEEEEECTT
T ss_pred             HHHhcCCCcEEEEeccc
Confidence            44433 33477777763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.27  E-value=0.0032  Score=52.41  Aligned_cols=23  Identities=4%  Similarity=-0.260  Sum_probs=20.8

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .++|.|.|.+|+||||+|+.+.+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999983

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.26  E-value=0.015  Score=51.41  Aligned_cols=59  Identities=24%  Similarity=0.245  Sum_probs=36.9

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHccccccc----CCccceeEEEEeCCCCChHH
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKK----NFPCRAWANVYVSQDFDMRS  394 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~----~f~~~~w~~v~~~~~~~~~~  394 (501)
                      .|..+|..+=+.-+++.|+|++|+|||++|.+++.+.....    .....+|  +......+...
T Consensus        24 ~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   86 (254)
T d1pzna2          24 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW--IDTENTFRPER   86 (254)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEE--EESSSCCCHHH
T ss_pred             HHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEE--EeccchhHHHH
Confidence            34455543334557999999999999999999876322111    1233556  66655555443

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.0034  Score=53.59  Aligned_cols=21  Identities=29%  Similarity=0.778  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.||+|+|||||++.+..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999876

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.22  E-value=0.0045  Score=52.59  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -.|.|.|++|+||||+|..++.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3577999999999999999877

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0056  Score=53.08  Aligned_cols=23  Identities=39%  Similarity=0.694  Sum_probs=20.8

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +-+|+|.|++|+||||+|+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998877

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.17  E-value=0.029  Score=48.10  Aligned_cols=23  Identities=26%  Similarity=-0.006  Sum_probs=18.3

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      +.+||.++|+.|+||||.+-++.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999997654443

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0054  Score=51.67  Aligned_cols=29  Identities=21%  Similarity=0.362  Sum_probs=23.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCc
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFP  377 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~  377 (501)
                      +.|+|+||+|+|||||++++..  +....|.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~--~~~~~~~   32 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT--KHPDRFA   32 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH--HCTTTEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHH--hCCcCee
Confidence            5799999999999999999886  4444443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.12  E-value=0.0063  Score=52.66  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=22.4

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+..+|-++|++|+||||||+.+..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557999999999999999999876

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.0083  Score=54.64  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=20.9

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +-++++.++|-||+||||+|..++.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~   30 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAI   30 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHH
Confidence            3468999999999999998877665

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.10  E-value=0.003  Score=52.83  Aligned_cols=21  Identities=29%  Similarity=0.113  Sum_probs=18.4

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .|.++|++|+||||+|+.+.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            466889999999999999974

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.08  E-value=0.0036  Score=52.39  Aligned_cols=20  Identities=30%  Similarity=0.134  Sum_probs=18.6

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.|+|.+|+|||||++.+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHh
Confidence            78999999999999999975

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.02  E-value=0.0045  Score=57.27  Aligned_cols=46  Identities=13%  Similarity=0.000  Sum_probs=33.7

Q ss_pred             cccccchhhHHHHHHHHhc------------CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIR------------SHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~------------~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++|.++.++.|...+..            .+...+-+..+|++|+|||+||+.+.+
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhh
Confidence            3578998888887765510            011245667899999999999999985

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.02  E-value=0.0057  Score=53.31  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +|+|.|++|+||||+|+.++.+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999873

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.041  Score=50.22  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=21.9

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+-+|+|.|.+|+||||+|+.+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4456999999999999999999876

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.97  E-value=0.0056  Score=51.41  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=18.7

Q ss_pred             EEEEecCCCChHHHHHHHHc
Q 010799          349 ISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |+|.|++|+||||+|+.++.
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77999999999999999887

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.94  E-value=0.028  Score=50.27  Aligned_cols=83  Identities=14%  Similarity=0.031  Sum_probs=55.1

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc------Cc-chHHHHH
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE------KQ-LDPQKKL  226 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~------~~-~~~~~~l  226 (501)
                      +.-+++-|.|.+|+||||||.++.....-.  =...+|+.....++.+.     +++++.+.+.      .. .+..+.+
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~--g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~  130 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIA  130 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHT--TCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcC--CCEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHH
Confidence            456788999999999999998777543333  33578999999998764     5666655332      11 1223444


Q ss_pred             HHHcc-CCeEEEEEecCC
Q 010799          227 RKLFT-ENRYLVVIINAR  243 (501)
Q Consensus       227 ~~~l~-~kr~LlVlDdv~  243 (501)
                      ...++ ++.-|||+|.+-
T Consensus       131 ~~l~~~~~~~liIiDSi~  148 (269)
T d1mo6a1         131 DMLIRSGALDIVVIDSVA  148 (269)
T ss_dssp             HHHHHTTCEEEEEEECST
T ss_pred             HHHHhcCCCCEEEEeccc
Confidence            44444 446688899874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.87  E-value=0.0063  Score=51.23  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.|++|+||||+|+.++.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367889999999999999987

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.024  Score=48.52  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=26.3

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .|-++|..+=..-+++.|.|++|+|||+||.+++.+
T Consensus        11 ~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          11 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            344445332234479999999999999999998764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.83  E-value=0.01  Score=54.99  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=29.9

Q ss_pred             hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...+|++.+.....+..+|+|.|++|+|||||.-.+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            34556666665556789999999999999999887763

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.78  E-value=0.0058  Score=55.09  Aligned_cols=22  Identities=9%  Similarity=0.027  Sum_probs=19.5

Q ss_pred             eeEEEEEeeCChhhHHHHhhhh
Q 010799          156 LFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ++.|+|+|-||+||||+|-.+.
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCcCCHHHHHHHHH
Confidence            4789999999999999997775

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.025  Score=50.73  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .+..|+|.+|+|||+|+..++.+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            58889999999999999887663

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.71  E-value=0.0079  Score=50.70  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++|+|.||+|+|||||++.+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5889999999999999999876

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.70  E-value=0.0046  Score=58.44  Aligned_cols=47  Identities=21%  Similarity=0.213  Sum_probs=35.8

Q ss_pred             ccceeecchhHHHHHHHhh----------------------------cCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          322 VTAVVSMENDILKLAKLTL----------------------------NSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~----------------------------~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ...+||.++..+.+...+.                            +.......+.+.||.|||||.||+.++.
T Consensus        16 ~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          16 DNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             HTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHh
Confidence            4678999998887765542                            1122345789999999999999999876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.69  E-value=0.0081  Score=50.58  Aligned_cols=20  Identities=35%  Similarity=0.536  Sum_probs=18.7

Q ss_pred             EEEEecCCCChHHHHHHHHc
Q 010799          349 ISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |.|.|++|+||||+|+.++.
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999988

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.0055  Score=53.24  Aligned_cols=42  Identities=14%  Similarity=0.019  Sum_probs=30.3

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQ  210 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~  210 (501)
                      .+||+|-|++|+||||+|+.+.++      |....       .+.-.+++.++..
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~------~gl~~-------iStGdLlR~~a~~   44 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEA------LQWHL-------LDSGAIYRVLALA   44 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH------HTCEE-------EEHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH------hCCcE-------ECHHHHHHHHHHH
Confidence            359999999999999999999843      32221       1566777776654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.56  E-value=0.011  Score=50.14  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -.|+|.|++|+||||+|+.++.
T Consensus         7 mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHH
Confidence            3566779999999999999988

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.016  Score=53.68  Aligned_cols=37  Identities=16%  Similarity=0.085  Sum_probs=29.0

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          142 VNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       142 ~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++++.+.....+..+|+|.|.+|+|||||...+..
T Consensus        40 ~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          40 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            3456666655555789999999999999999988764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.44  E-value=0.0085  Score=55.90  Aligned_cols=46  Identities=24%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             cccceeecchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          321 EVTAVVSMENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       321 ~~~~fvGR~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++.+++|.+.....|.-.....  +.+-+.|.|++|+|||+||+.+..
T Consensus         5 ~f~~I~Gq~~~kral~laa~~~--~~h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred             ChhhccCcHHHHHHHHHHHhcc--CCCeEEEECCCCccHHHHHHHHHH
Confidence            3577899987666554333221  124689999999999999998753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0074  Score=51.34  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=20.3

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+|.|.|++|+||||.|+.+.+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999999984

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.067  Score=48.13  Aligned_cols=27  Identities=30%  Similarity=0.461  Sum_probs=22.5

Q ss_pred             CCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          342 SSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       342 ~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++..+-+|+|.|..|+|||||+..+..
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHH
Confidence            344456999999999999999988776

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.36  E-value=0.017  Score=52.44  Aligned_cols=37  Identities=14%  Similarity=0.037  Sum_probs=25.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeC
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVS  387 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~  387 (501)
                      +.|+|+|-||+||||+|..++.  .....-..++-  |.+.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~--~LA~~G~rVLl--ID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVA--ALAEMGKKVMI--VGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEE--EEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEE--EecC
Confidence            6788999999999999888766  33333234555  5553

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.31  E-value=0.012  Score=49.69  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=19.4

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.++| |.|++|+||||+|+.++.
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHH
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHH
Confidence            34555 789999999999999887

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=94.31  E-value=0.051  Score=46.50  Aligned_cols=58  Identities=14%  Similarity=-0.067  Sum_probs=34.5

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc-CCCCCHHHHHHHHHHHhcCC
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV-PEELERRELVTDILKQVGGS  214 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v-s~~~~~~~l~~~i~~~~~~~  214 (501)
                      +.+||.++|+.|+||||.+-++..... +.. ...+.|+. .......+=++...+.++.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g-~kV~lit~Dt~R~gA~eQL~~~a~~l~i~   63 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG-KKVMFCAGDTFRAAGGTQLSEWGKRLSIP   63 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT-CCEEEECCCCSSTTHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-CcEEEEEeccccccchhhHhhcccccCce
Confidence            568999999999999986555543222 222 23445543 23445555555666665543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.28  E-value=0.011  Score=50.04  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=19.2

Q ss_pred             ceEEEEEecCCCChHHHHHHHH
Q 010799          346 NFLISVAGAAGSGKTALVKTIY  367 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~  367 (501)
                      +=+|+|+|+.|+||||+|..+-
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.041  Score=48.32  Aligned_cols=36  Identities=22%  Similarity=0.221  Sum_probs=28.0

Q ss_pred             HHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          333 LKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       333 ~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..|.++|..+=+.-+++.|+|++|+|||++|.+++.
T Consensus        24 ~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          24 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            445555644445557999999999999999999876

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.038  Score=51.77  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=18.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++..|+|++|+|||+++..+..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHH
Confidence            6999999999999998866544

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.011  Score=49.48  Aligned_cols=20  Identities=35%  Similarity=0.408  Sum_probs=18.4

Q ss_pred             EEEEecCCCChHHHHHHHHc
Q 010799          349 ISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |.|.|++|+||||+|+.++.
T Consensus         3 I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66899999999999999887

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.027  Score=50.31  Aligned_cols=81  Identities=10%  Similarity=-0.034  Sum_probs=50.9

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCc------C-cchHHHHHH
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGGSKVE------K-QLDPQKKLR  227 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~------~-~~~~~~~l~  227 (501)
                      .-+++-|+|.+|+|||||+.++.....-  .=...+|+.....++...     ++.++.+.+.      . ..+..+.+.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~--~g~~~vyidtE~~~~~~~-----a~~~Gvd~d~v~~~~~~~~E~~~~~i~  125 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD  125 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEEccccccCHHH-----HHHhCCCHHHEEEecCCCHHHHHHHHH
Confidence            3468899999999999999888754332  223568999888888753     5666654322      1 111233333


Q ss_pred             HHcc-CCeEEEEEecC
Q 010799          228 KLFT-ENRYLVVIINA  242 (501)
Q Consensus       228 ~~l~-~kr~LlVlDdv  242 (501)
                      ..++ ++--|||+|-+
T Consensus       126 ~l~~~~~~~liViDSi  141 (263)
T d1u94a1         126 ALARSGAVDVIVVDSV  141 (263)
T ss_dssp             HHHHHTCCSEEEEECG
T ss_pred             HHHhcCCCCEEEEECc
Confidence            3333 33347788886

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.011  Score=49.62  Aligned_cols=20  Identities=25%  Similarity=0.498  Sum_probs=17.8

Q ss_pred             EEEEecCCCChHHHHHHHHc
Q 010799          349 ISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |.|.|++|+||||+|+.++.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45779999999999999987

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.053  Score=46.50  Aligned_cols=58  Identities=16%  Similarity=-0.002  Sum_probs=36.6

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH--HHHHHHHHHHhcCC
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER--RELVTDILKQVGGS  214 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~--~~l~~~i~~~~~~~  214 (501)
                      ....||.++|+.|+||||.+-++...-.   .....+.+.-.+.|..  .+=++...+.++.+
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~---~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~   66 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP   66 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHH---TTTCCEEEECCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEecccccccchhhhhhhhhhcCCc
Confidence            3578999999999999976544443221   2234566666666655  44455666666654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.15  E-value=0.01  Score=50.27  Aligned_cols=23  Identities=13%  Similarity=0.062  Sum_probs=19.5

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++++| |+|++|+||||+|+.+..
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHH
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHH
Confidence            45666 789999999999999873

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.14  Score=44.67  Aligned_cols=24  Identities=13%  Similarity=0.282  Sum_probs=20.5

Q ss_pred             CceEEEEEecCCCChHHHHHHHHc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+++.|+|+...|||++.+.++-
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHH
Confidence            347899999999999999888754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.06  E-value=0.011  Score=50.01  Aligned_cols=23  Identities=17%  Similarity=-0.042  Sum_probs=20.2

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      +.-+|||.|+.|+||||+|..+-
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999774

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.06  E-value=0.0065  Score=51.75  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=18.6

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .|.|+|++|+|||||++.+..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999873

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.011  Score=51.12  Aligned_cols=23  Identities=22%  Similarity=0.040  Sum_probs=20.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +-||+|.|..|+||||||+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.024  Score=52.23  Aligned_cols=46  Identities=11%  Similarity=0.072  Sum_probs=36.1

Q ss_pred             cccccchhhHHHHHHHHhc-------CCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          133 TGILDLNKEVNKLADFLIR-------SHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~~-------~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..++|.+..++.+...+..       .+....++..+|+.|+|||.||+.+..
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHh
Confidence            4688999999988776641       122456888999999999999999874

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.81  E-value=0.12  Score=40.52  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +..++..|+++.|.|||+++-.++.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3457899999999999998866554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.81  E-value=0.012  Score=53.46  Aligned_cols=22  Identities=9%  Similarity=-0.025  Sum_probs=19.3

Q ss_pred             eeEEEEEeeCChhhHHHHhhhh
Q 010799          156 LFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ++.|+|.|-||+||||+|..+.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            5788999999999999988775

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.79  E-value=0.01  Score=50.20  Aligned_cols=21  Identities=10%  Similarity=-0.111  Sum_probs=18.6

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .|.|.|++|+||||+|+.+.+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.77  E-value=0.016  Score=49.24  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=21.9

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++-+|+|-|+.|+||||+++.+..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999999876

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.72  E-value=0.011  Score=49.55  Aligned_cols=20  Identities=15%  Similarity=0.127  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.|.|++|+||||+|+.+..
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999973

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.69  E-value=0.14  Score=45.47  Aligned_cols=90  Identities=13%  Similarity=0.194  Sum_probs=53.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC-ChHHHHHHHHHHhccC--CCC---------CCCCH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF-DMRSVFADILRQLTQD--EVD---------EESSL  414 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~--~~~---------~~~~~  414 (501)
                      ..++|.|.+|+|||+|+..+.+.. .+.+=+..++  +.+.... .+.++..++.+.-...  ...         ...+.
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~--~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~~~  145 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVF--AGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP  145 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEE--EEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHH-HhhCCCeEEE--EEeccChHHHHHHHHHHHhcCccccccccceEEEEEECCCCCH
Confidence            469999999999999999988731 2233334566  6666543 4556666666532111  000         11121


Q ss_pred             H------HHHHHHHHhcC---CceEEEEEcCCCC
Q 010799          415 D------DLESEFTGILY---EKRYLVVLDDVHS  439 (501)
Q Consensus       415 ~------~~~~~l~~~l~---~~r~LlVlDnv~~  439 (501)
                      .      ...-.+.+++.   ++.+|+++||+..
T Consensus       146 ~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr  179 (276)
T d2jdid3         146 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR  179 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEEEEcchhH
Confidence            1      12234556653   5789999999854

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=93.67  E-value=0.059  Score=46.20  Aligned_cols=23  Identities=26%  Similarity=0.180  Sum_probs=14.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ...||.++|..|+||||.+-++.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            57899999999999997644443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.65  E-value=0.011  Score=53.50  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=19.0

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.++|+|.|.+|+||||+++.+.+
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHH
Confidence            3567999999999999999998766

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.54  E-value=0.014  Score=49.50  Aligned_cols=24  Identities=29%  Similarity=0.028  Sum_probs=21.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +.++|.|.|++|+||||+|+.+..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999999974

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=0.015  Score=48.82  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=18.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++++ |.|++|+||||+|+.+..
T Consensus         3 mrIv-l~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMV-LIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHH
T ss_pred             eEEE-EECCCCCCHHHHHHHHHH
Confidence            4544 779999999999999974

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.52  E-value=0.015  Score=49.32  Aligned_cols=24  Identities=17%  Similarity=0.120  Sum_probs=19.8

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +.--|.|.|++|+||||+|+.+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            344566889999999999999984

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.50  E-value=0.019  Score=48.76  Aligned_cols=24  Identities=29%  Similarity=0.137  Sum_probs=21.3

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..+|+|-|..|+||||+++.+..
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999874

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.48  E-value=0.046  Score=52.67  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=37.3

Q ss_pred             ccceeecchhHHHHHHHhhc--------CCC----CceEEEEEecCCCChHHHHHHHHcccccccCC
Q 010799          322 VTAVVSMENDILKLAKLTLN--------SSD----KNFLISVAGAAGSGKTALVKTIYESSYTKKNF  376 (501)
Q Consensus       322 ~~~fvGR~~~~~~l~~~L~~--------~~~----~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f  376 (501)
                      +..+||.++..+.|.=.+.+        ...    ...-|.+.||+|+|||.||+.++.  ...-.|
T Consensus        13 d~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk--~l~VPF   77 (443)
T d1g41a_          13 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF   77 (443)
T ss_dssp             HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH--HTTCCE
T ss_pred             cCcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence            35578888888777554422        111    235799999999999999999988  444444

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.45  E-value=0.017  Score=50.76  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=29.8

Q ss_pred             cchhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          328 MENDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       328 R~~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ...=+..|.++|..+=..-.++.|.|.+|+|||++|..++.+
T Consensus        16 i~TG~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          16 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             ECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ecCCCHHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            333445566666432234479999999999999999998764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.44  E-value=0.013  Score=49.12  Aligned_cols=20  Identities=20%  Similarity=0.122  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.|.|++|+||||+|+.+.+
T Consensus         3 I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999984

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.41  E-value=0.029  Score=46.60  Aligned_cols=34  Identities=15%  Similarity=-0.011  Sum_probs=24.0

Q ss_pred             HHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          145 LADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       145 l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      +.++|.-.....+ |.++|.+|+|||||...+...
T Consensus         3 ~~~~~~~~~k~~k-I~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           3 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             hHHhccccCCCCE-EEEECCCCCCHHHHHHHHhCC
Confidence            3445544433444 679999999999999888643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.40  E-value=0.013  Score=49.21  Aligned_cols=22  Identities=9%  Similarity=-0.117  Sum_probs=19.6

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++|.|+|++|+|||||++.+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4788999999999999998864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.37  E-value=0.013  Score=49.27  Aligned_cols=20  Identities=20%  Similarity=0.184  Sum_probs=18.3

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.|.|++|+||||+|+.+..
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999984

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.33  E-value=0.014  Score=50.65  Aligned_cols=43  Identities=14%  Similarity=-0.054  Sum_probs=30.2

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVG  212 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~  212 (501)
                      -+|+|-|++|+||||+|+.+..      +|...   +    .+.-.+++.++....
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~------~lg~~---~----istGdl~R~~a~~~~   46 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK------DFGFT---Y----LDTGAMYRAATYMAL   46 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH------HHCCE---E----EEHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH------HhCCc---E----ECHHHHHHHHHHHHH
Confidence            4688999999999999999984      33222   1    156677777665443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.30  E-value=0.027  Score=52.88  Aligned_cols=44  Identities=11%  Similarity=-0.071  Sum_probs=31.5

Q ss_pred             cccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          135 ILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       135 ~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +.|.+....+..+.+..+.+..+.+.++|++|+|||++|+.+.+
T Consensus       133 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         133 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            34444444444444445556677899999999999999999985

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.022  Score=48.98  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+++|+||+|+|||||.+.+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999998876

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.26  E-value=0.027  Score=50.66  Aligned_cols=34  Identities=21%  Similarity=0.047  Sum_probs=25.1

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhh
Q 010799          142 VNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       142 ~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      +..+.+.+..  ...+||.+.|-||+||||+|-.+.
T Consensus         8 ~~~~~~~~~~--~~~~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2           8 LSALVDDIAR--NEHGLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             HHHHHHHHHT--TSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHhhc--CCCEEEEEECCCCCCHHHHHHHHH
Confidence            3455566653  367899999999999999765553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=93.21  E-value=0.07  Score=45.81  Aligned_cols=59  Identities=24%  Similarity=0.119  Sum_probs=33.3

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEc-CCCCCHHHHHHHHHHHhcCC
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPV-PEELERRELVTDILKQVGGS  214 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~v-s~~~~~~~l~~~i~~~~~~~  214 (501)
                      ....||.++|+.|+||||.+-++...- ..++ ..+..|+. .......+=++...+.++.+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~-~~~~-~kV~lit~Dt~R~gA~eQL~~~a~~l~i~   68 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMF-VDEG-KSVVLAAADTFRAAAIEQLKIWGERVGAT   68 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH-HHTT-CCEEEEEECTTCHHHHHHHHHHHHHHTCE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH-HHCC-CceEEEeecccccchhHHHHHHhhhcCcc
Confidence            357899999999999997654444322 2222 23344433 23333444555555666543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.10  E-value=0.022  Score=48.29  Aligned_cols=24  Identities=8%  Similarity=-0.035  Sum_probs=21.8

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +++.|+|+|.+|+|||||...+.+
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcC
Confidence            577899999999999999999975

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.10  E-value=0.016  Score=47.33  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=18.8

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |+|+|.+|+|||||.+.+.++
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999988764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.08  E-value=0.016  Score=47.08  Aligned_cols=22  Identities=32%  Similarity=0.191  Sum_probs=18.8

Q ss_pred             EEEEeeCChhhHHHHhhhhccc
Q 010799          159 ISVVDVAGSVMTTDLWKSYECE  180 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~~  180 (501)
                      |.|+|.+|+|||||...+..+.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5699999999999999887543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.97  E-value=0.029  Score=46.48  Aligned_cols=23  Identities=17%  Similarity=-0.002  Sum_probs=19.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      --|.++|.+|+|||||...+.+.
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34789999999999999988653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=92.95  E-value=0.018  Score=50.52  Aligned_cols=21  Identities=29%  Similarity=0.036  Sum_probs=19.1

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ||+|+|+.|.|||||...+-.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            789999999999999988864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=92.95  E-value=0.025  Score=45.77  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.7

Q ss_pred             EEEEecCCCChHHHHHHHHcc
Q 010799          349 ISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      |+|.|.+|+|||||..++..+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999998764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.95  E-value=0.035  Score=46.95  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +..+.|+|.|.+|+|||||...+.+
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcC
Confidence            3456799999999999999999875

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=92.93  E-value=0.025  Score=49.50  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +|+|.|+.|+|||||...+.++
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            7899999999999999998763

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.93  E-value=0.014  Score=49.27  Aligned_cols=21  Identities=24%  Similarity=0.235  Sum_probs=18.8

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .|.|+|++|+|||||++.+.+
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999874

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.89  E-value=0.025  Score=52.55  Aligned_cols=44  Identities=11%  Similarity=-0.024  Sum_probs=31.5

Q ss_pred             ccccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhh
Q 010799          132 KTGILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       132 ~~~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .++++|.+..+..|.-.+...  +..-+-+.|.+|+||||||+.+.
T Consensus         6 f~~I~Gq~~~kral~laa~~~--~~h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_           6 FSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             GGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHH
T ss_pred             hhhccCcHHHHHHHHHHHhcc--CCCeEEEECCCCccHHHHHHHHH
Confidence            468999998777655433321  12246889999999999999764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.88  E-value=0.033  Score=48.52  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=23.7

Q ss_pred             eEEEEEec-CCCChHHHHHHHHcccccccCCcccee
Q 010799          347 FLISVAGA-AGSGKTALVKTIYESSYTKKNFPCRAW  381 (501)
Q Consensus       347 ~~v~I~G~-gGvGKT~LA~~~~~~~~~~~~f~~~~w  381 (501)
                      ++|+++|. ||+||||+|..++.  .....-..++-
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~--~la~~g~~Vll   36 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSV--ALGDRGRKVLA   36 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHH--HHHHTTCCEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHH--HHHhCCCCEEE
Confidence            68999955 99999999998877  33333334444

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.022  Score=49.90  Aligned_cols=23  Identities=13%  Similarity=-0.083  Sum_probs=21.1

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+.|+|-|+-|+||||+++.+..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.045  Score=49.92  Aligned_cols=23  Identities=13%  Similarity=-0.005  Sum_probs=21.3

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ..-+|+|.|..|+||||+|+.+.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHH
Confidence            57899999999999999999987

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.02  Score=51.59  Aligned_cols=47  Identities=13%  Similarity=-0.068  Sum_probs=31.9

Q ss_pred             HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEE
Q 010799          144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWV  192 (501)
Q Consensus       144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv  192 (501)
                      ++++.|..-. +=.-++|.|..|+|||+|+..+.++... ++-++++.+
T Consensus        32 r~ID~l~Pig-rGQr~~I~g~~g~GKT~l~~~i~~~~~~-~~~~~v~~~   78 (289)
T d1xpua3          32 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMV   78 (289)
T ss_dssp             HHHHHHSCCB-TTCEEEEEECSSSSHHHHHHHHHHHHHH-HCTTSEEEE
T ss_pred             eeeeeccccc-CCCeeeEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEE
Confidence            6888887532 2245799999999999999998864332 333444444

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.018  Score=48.04  Aligned_cols=20  Identities=15%  Similarity=-0.062  Sum_probs=18.0

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.|.|++|+||||+|+.+..
T Consensus         3 I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999984

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.81  E-value=0.025  Score=48.74  Aligned_cols=24  Identities=17%  Similarity=-0.047  Sum_probs=21.4

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +-.||-+.|++|.||||||+.+..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999873

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.79  E-value=0.017  Score=49.43  Aligned_cols=22  Identities=18%  Similarity=-0.074  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|+|||||.+.+..
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            5889999999999999999974

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.78  E-value=0.042  Score=45.41  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             CCCceEEEEEecCCCChHHHHHHHHc
Q 010799          343 SDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       343 ~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++.--|++.|.+|+|||+|..++..
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            34445788999999999999999866

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.023  Score=49.96  Aligned_cols=22  Identities=14%  Similarity=0.010  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|+|||||++.+.-
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHcC
Confidence            5899999999999999999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.69  E-value=0.031  Score=46.63  Aligned_cols=31  Identities=26%  Similarity=0.188  Sum_probs=22.3

Q ss_pred             HHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          148 FLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       148 ~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .|.......+ |.++|.+|+|||||...+.+.
T Consensus        10 ~l~~~~k~~K-I~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          10 KLWGSNKELR-ILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             GGTTCSSCEE-EEEEEETTSSHHHHHHHTCCS
T ss_pred             HHhCCCceEE-EEEECCCCCCHHHHHHHHhcC
Confidence            3333444555 459999999999999987543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.64  E-value=0.049  Score=45.03  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=24.1

Q ss_pred             HHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          336 AKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       336 ~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .+++.-. .+...|+|.|.+|+|||||..++...
T Consensus         4 ~~~~~~~-~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           4 LQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHTCT-TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             HHhcccc-CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3444333 34456889999999999999998663

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.64  E-value=0.024  Score=50.42  Aligned_cols=21  Identities=24%  Similarity=0.031  Sum_probs=19.6

Q ss_pred             eEEEEEeeCChhhHHHHhhhh
Q 010799          157 FTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .+++|+|..|+|||||++.+.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~   62 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLIT   62 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHh
Confidence            589999999999999999986

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.62  E-value=0.022  Score=50.03  Aligned_cols=49  Identities=14%  Similarity=0.101  Sum_probs=31.9

Q ss_pred             HHHHHccCCeEEEEEecCCCh-------hHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          225 KLRKLFTENRYLVVIINARTP-------DIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       225 ~l~~~l~~kr~LlVlDdv~~~-------~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      .+...|-.+.-+|+||.....       ..|+.+....  ...|..||++|.+.+.|.
T Consensus       149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~--~~~g~tvi~vTHd~~~~~  204 (240)
T d1g2912         149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ--RQLGVTTIYVTHDQVEAM  204 (240)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH--HHHTCEEEEEESCHHHHH
T ss_pred             HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHH--hccCCEEEEEcCCHHHHH
Confidence            466667777778999997642       2244443321  123778999999987764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.023  Score=49.64  Aligned_cols=21  Identities=19%  Similarity=-0.031  Sum_probs=19.7

Q ss_pred             eEEEEEeeCChhhHHHHhhhh
Q 010799          157 FTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .+++|+|..|+|||||.+.+.
T Consensus        27 ei~~liGpsGsGKSTLl~~i~   47 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIA   47 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHh
Confidence            589999999999999999987

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.036  Score=48.52  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +++.|+|-|+-|+||||+++.+..+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3679999999999999999998874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.53  E-value=0.038  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.066  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|+|||||++.+.-
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHc
Confidence            5899999999999999999963

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.52  E-value=0.039  Score=48.27  Aligned_cols=22  Identities=9%  Similarity=-0.197  Sum_probs=19.7

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|+.|+|||||.+.+..
T Consensus        25 e~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCChHHHHHHHHHc
Confidence            3788999999999999999974

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.52  E-value=0.07  Score=43.91  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=25.6

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +..+.+++.   ++...|++.|.+|+|||||..++...
T Consensus         4 ~~~~~~~~~---~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           4 FTRIWRLFN---HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHHT---TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHHhC---CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            345565553   33356889999999999999988764

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.51  E-value=0.039  Score=47.93  Aligned_cols=36  Identities=25%  Similarity=0.158  Sum_probs=25.8

Q ss_pred             eEEEEE-ecCCCChHHHHHHHHcccccccCCccceeEEEEe
Q 010799          347 FLISVA-GAAGSGKTALVKTIYESSYTKKNFPCRAWANVYV  386 (501)
Q Consensus       347 ~~v~I~-G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~  386 (501)
                      ++|+|+ |-||+||||+|..++.  .....-..+..  +.+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~--~la~~g~~Vll--iD~   38 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGV--ALAQLGHDVTI--VDA   38 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHH--HHHHTTCCEEE--EEC
T ss_pred             EEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEE--EeC
Confidence            678888 6699999999998877  33444345556  554

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.50  E-value=0.024  Score=49.27  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=25.1

Q ss_pred             HHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          335 LAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       335 l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |.+.|..+=+.-.++.|+|.+|+|||++|.+++.
T Consensus        15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4455533324447999999999999999988765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=92.41  E-value=0.032  Score=45.42  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .|+|.|.+|+|||||...+...
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999998764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.041  Score=48.72  Aligned_cols=23  Identities=17%  Similarity=-0.130  Sum_probs=20.4

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -.+++|+|..|+|||||++.+..
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            35899999999999999998864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.025  Score=47.33  Aligned_cols=21  Identities=10%  Similarity=-0.125  Sum_probs=19.4

Q ss_pred             eEEEEEeeCChhhHHHHhhhh
Q 010799          157 FTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      +.|.|+|++|+|||||++.+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~   24 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLI   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999887

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.32  E-value=0.026  Score=49.51  Aligned_cols=22  Identities=18%  Similarity=0.031  Sum_probs=19.9

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|+|||||.+.+.-
T Consensus        33 e~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHHc
Confidence            5899999999999999998864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.31  E-value=0.058  Score=46.64  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=27.4

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .-++.|.++|.+     ++.++.|.+|+|||||...+..
T Consensus        84 ~g~~~L~~~l~~-----kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          84 MGIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             TTHHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHST
T ss_pred             hhHhhHHHHhcC-----CeEEEECCCCCCHHHHHHhhcc
Confidence            346778877732     5788999999999999999865

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.29  E-value=0.075  Score=47.51  Aligned_cols=96  Identities=10%  Similarity=0.080  Sum_probs=54.5

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCC-HHHHHHHHHHHhcCC--------CCcCc-c-----hH
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELE-RRELVTDILKQVGGS--------KVEKQ-L-----DP  222 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~~i~~~~~~~--------~~~~~-~-----~~  222 (501)
                      -++|+|.+|+|||+|+...-.+.  ..+-+.++++.+.+... ..++..+..+.=...        .+++. .     ..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~--~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~~~  146 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ--QGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT  146 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC--CTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHhhh--cccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHHHH
Confidence            36889999999999998754322  33445778888877643 334444443321000        01111 1     11


Q ss_pred             HHHHHHHc--cCCeEEEEEecCCC-hhHHHHHhhcC
Q 010799          223 QKKLRKLF--TENRYLVVIINART-PDIWDILKYLF  255 (501)
Q Consensus       223 ~~~l~~~l--~~kr~LlVlDdv~~-~~~~~~l~~~~  255 (501)
                      .-.+.+++  ++|+.|+++||+.. ...+.++...+
T Consensus       147 a~tiAEyfrd~G~~Vlll~Dsltr~A~A~rEis~~~  182 (276)
T d1fx0a3         147 GAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLL  182 (276)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCceeEEeeccHHHHHHHHHHHHHc
Confidence            23334444  47999999999854 34466655443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.048  Score=46.84  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..|+|-|+.|+||||+++.+..
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.23  E-value=0.029  Score=49.49  Aligned_cols=22  Identities=14%  Similarity=-0.109  Sum_probs=20.1

Q ss_pred             eeEEEEEeeCChhhHHHHhhhh
Q 010799          156 LFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      -..++|+|..|+|||||++.+.
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~   49 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLE   49 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999986

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.18  E-value=0.03  Score=48.76  Aligned_cols=22  Identities=14%  Similarity=-0.141  Sum_probs=20.0

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|+|||||.+.+..
T Consensus        27 e~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            5899999999999999999864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.14  E-value=0.053  Score=45.78  Aligned_cols=38  Identities=16%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..+..|..+| .+.++..++.++|++++|||.+|..+.+
T Consensus        38 ~Fl~~l~~~l-~~~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          38 TFLGALKSFL-KGTPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             HHHHHHHHHH-HTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCCceEEEEECCCCccHHHHHHHHHH
Confidence            4556666666 4557778999999999999999988765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.04  E-value=0.03  Score=50.55  Aligned_cols=22  Identities=18%  Similarity=0.072  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|+|||||++.+..
T Consensus        63 e~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhC
Confidence            5799999999999999999864

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.04  E-value=0.13  Score=45.88  Aligned_cols=89  Identities=15%  Similarity=0.160  Sum_probs=47.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCC-ChHHHHHHHHHHhccCCCC-----CCCCH------
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDF-DMRSVFADILRQLTQDEVD-----EESSL------  414 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~------  414 (501)
                      ..++|.|.+|+|||+|+.....  ....+-..+++  +.+.... .+.+...++...-......     ...+.      
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~--~~~~~~~v~V~--~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a  143 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTIL--NQQGQNVICVY--VAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA  143 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHH--TCCTTTCEEEE--EEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred             ceEeeccCCCCChHHHHHHHHh--hhcccCceeee--eeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHH
Confidence            4588899999999999987655  23333334455  5554443 2223333332211110000     01111      


Q ss_pred             HHHHHHHHHhcC--CceEEEEEcCCCC
Q 010799          415 DDLESEFTGILY--EKRYLVVLDDVHS  439 (501)
Q Consensus       415 ~~~~~~l~~~l~--~~r~LlVlDnv~~  439 (501)
                      ....-.+.+++.  ++..|+++||+-.
T Consensus       144 ~~~a~tiAEyfrd~G~~Vlll~Dsltr  170 (276)
T d1fx0a3         144 PYTGAALAEYFMYRERHTLIIYDDLSK  170 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHHHcCCceeEEeeccHH
Confidence            133344555553  5799999999865

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.029  Score=48.21  Aligned_cols=19  Identities=16%  Similarity=-0.022  Sum_probs=17.7

Q ss_pred             EEEEEeeCChhhHHHHhhh
Q 010799          158 TISVVDVAGSVMTTDLWKS  176 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v  176 (501)
                      +|+|.|+.|+||||.|+.+
T Consensus         5 iIgitG~igSGKStv~~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            8999999999999999865

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.03  E-value=0.049  Score=48.98  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=25.5

Q ss_pred             HHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          334 KLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       334 ~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +..+.+..- .+-..++|.|.+|+|||+|+..+.+
T Consensus        32 r~ID~l~Pi-grGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          32 RVLDLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             HHHHHHSCC-BTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeeecccc-cCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            455555432 2235889999999999999999887

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.02  E-value=0.038  Score=45.21  Aligned_cols=22  Identities=18%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+.++.+.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3779999999999999988763

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.00  E-value=0.028  Score=46.02  Aligned_cols=21  Identities=14%  Similarity=0.001  Sum_probs=18.6

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||+..+.++
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999888764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.99  E-value=0.043  Score=45.19  Aligned_cols=21  Identities=19%  Similarity=0.452  Sum_probs=19.4

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.|.+|+|||||..++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.04  Score=47.28  Aligned_cols=21  Identities=24%  Similarity=0.654  Sum_probs=18.5

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +|+|+|..|+||||+|+.+-.
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            899999999999999986643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.93  E-value=0.039  Score=48.78  Aligned_cols=45  Identities=2%  Similarity=-0.058  Sum_probs=34.3

Q ss_pred             ccccchhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          134 GILDLNKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       134 ~~vg~~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++||....+.++.+.+..-...-.-|-|.|..|+|||++|+.++.
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            367888888888887764322223468899999999999999985

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.93  E-value=0.033  Score=45.62  Aligned_cols=21  Identities=10%  Similarity=0.020  Sum_probs=18.0

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||+..+.++
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999877653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.029  Score=49.06  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.6

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .+.|+|-|+-|+||||+|+.+..+
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999998774

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.039  Score=45.62  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+.++.+.
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3778999999999999998764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.88  E-value=0.041  Score=47.04  Aligned_cols=21  Identities=29%  Similarity=0.688  Sum_probs=18.5

Q ss_pred             eEEEEEecCCCChHHHHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIY  367 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~  367 (501)
                      -+|+|+|..|+||||+|..+-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.028  Score=46.55  Aligned_cols=21  Identities=10%  Similarity=-0.007  Sum_probs=18.4

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.|+|.+|+|||||+..+.++
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999987654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.18  Score=42.85  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +.|+|-|+.|+||||++..+..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999877

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.81  E-value=0.044  Score=46.66  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +.|+|.|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58899999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.78  E-value=0.042  Score=44.88  Aligned_cols=22  Identities=32%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+.++.+.
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998764

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.78  E-value=0.032  Score=48.45  Aligned_cols=22  Identities=27%  Similarity=0.054  Sum_probs=19.3

Q ss_pred             eeEEEEE-eeCChhhHHHHhhhh
Q 010799          156 LFTISVV-DVAGSVMTTDLWKSY  177 (501)
Q Consensus       156 ~~vi~I~-G~~GvGKTtLa~~v~  177 (501)
                      ++||+|+ |-||+||||+|..+.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA   23 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLG   23 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCChHHHHHHHHH
Confidence            4789998 789999999998876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.033  Score=45.55  Aligned_cols=21  Identities=5%  Similarity=-0.164  Sum_probs=18.4

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||+..+.++
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999987654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.75  E-value=0.058  Score=44.86  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=25.2

Q ss_pred             HHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          332 ILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       332 ~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +..+.+.|.. ..+.--|++.|.+|+|||||..++...
T Consensus         4 ~~~~~~~l~~-~~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_           4 FSSMFDKLWG-SNKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             HHHHHGGGTT-CSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             HHHHHHHHhC-CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3444444433 233346779999999999999997653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=91.71  E-value=0.033  Score=45.60  Aligned_cols=20  Identities=20%  Similarity=0.043  Sum_probs=17.9

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.|+|.+|+|||||...+.+
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            67999999999999998765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.044  Score=44.95  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|+.++.+.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4788999999999999998763

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.64  E-value=0.061  Score=46.95  Aligned_cols=41  Identities=12%  Similarity=-0.096  Sum_probs=32.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCC
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEE  197 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~  197 (501)
                      .-.++.|.|.+|+|||+|+.++..+  ...+....+|++...+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~--~~~~~~~~~~is~e~~   65 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFAYEES   65 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEESSSC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH--HHHhccccceeeccCC
Confidence            4578899999999999999888743  4456667788887543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.046  Score=44.98  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|..++...
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3678899999999999998764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.56  E-value=0.16  Score=46.64  Aligned_cols=102  Identities=16%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCChHHHHHHHHHHhccCCCC---CCCCHHHHHHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDMRSVFADILRQLTQDEVD---EESSLDDLESEFTG  423 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~l~~  423 (501)
                      +.+.|.|+.|+||||+.+.++.  .+......     +.+.....+.         +......   .....-...+.++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~--~i~~~~ri-----vtiEd~~El~---------l~~~~~~~~~~~~~~~~~~~ll~~  230 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME--FIPKEERI-----ISIEDTEEIV---------FKHHKNYTQLFFGGNITSADCLKS  230 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG--GSCTTCCE-----EEEESSCCCC---------CSSCSSEEEEECBTTBCHHHHHHH
T ss_pred             CCEEEEeeccccchHHHHHHhh--hcccccce-----eeccchhhhh---------cccccccceeccccchhHHHHHHH
Confidence            3589999999999999999887  33222111     2221111110         0000000   00011234566777


Q ss_pred             hcCCceEEEEEcCCCChhhHHHHHHhcCCCCCCCCCEEEEEeCChH
Q 010799          424 ILYEKRYLVVLDDVHSPGAWYDLKRIFSPQASPIGSRVILITREAY  469 (501)
Q Consensus       424 ~l~~~r~LlVlDnv~~~~~~~~l~~~l~~~~~~~~~~iIiTtR~~~  469 (501)
                      .++..+=.||+.++.+.+.+.. +.....  ...|  ++.|.....
T Consensus       231 ~lR~~pd~iivgEiR~~ea~~~-l~a~~t--Gh~g--~~tT~Ha~s  271 (323)
T d1g6oa_         231 CLRMRPDRIILGELRSSEAYDF-YNVLCS--GHKG--TLTTLHAGS  271 (323)
T ss_dssp             HTTSCCSEEEESCCCSTHHHHH-HHHHHT--TCSC--EEEEECCSS
T ss_pred             HhccCCCcccCCccCchhHHHH-HHHHHh--cCCc--EEEEECCCC
Confidence            8887777899999998877654 444444  2223  566655444

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.039  Score=48.31  Aligned_cols=23  Identities=9%  Similarity=-0.210  Sum_probs=21.1

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++.|+|=|.-|+||||+++.+.+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            57899999999999999999975

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.51  E-value=0.042  Score=45.49  Aligned_cols=24  Identities=21%  Similarity=-0.072  Sum_probs=21.4

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -...|+|+|.+|+|||||...+.+
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             cccEEEEECCCCCCHHHHHHHHhC
Confidence            357799999999999999999975

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.50  E-value=0.13  Score=41.71  Aligned_cols=46  Identities=22%  Similarity=0.402  Sum_probs=30.6

Q ss_pred             eecchhHHHHHHHhhc-----CCCCceEEEEEecCCCChHHHHHHHHcccc
Q 010799          326 VSMENDILKLAKLTLN-----SSDKNFLISVAGAAGSGKTALVKTIYESSY  371 (501)
Q Consensus       326 vGR~~~~~~l~~~L~~-----~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~  371 (501)
                      +.=+++..++-+.|..     .....-+|.+.|.=|+||||+++.+++...
T Consensus         8 l~~e~~t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_           8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            3444455555444421     122335899999999999999999987543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.035  Score=45.60  Aligned_cols=21  Identities=14%  Similarity=-0.015  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.|+|.+|+|||||+..+.++
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999887653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.43  E-value=0.035  Score=45.58  Aligned_cols=21  Identities=14%  Similarity=0.333  Sum_probs=18.3

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.|+|.+|+|||||...+.++
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999887754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=91.42  E-value=0.047  Score=44.60  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|...+...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999998763

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.41  E-value=0.072  Score=47.93  Aligned_cols=25  Identities=16%  Similarity=0.056  Sum_probs=21.6

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhc
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ...-+|||-|..|+|||||+..+..
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHH
Confidence            3467999999999999999988863

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.40  E-value=0.038  Score=45.30  Aligned_cols=21  Identities=19%  Similarity=0.059  Sum_probs=18.6

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||...+.++
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999988754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.038  Score=45.60  Aligned_cols=22  Identities=18%  Similarity=0.080  Sum_probs=18.9

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|.++|.+|+|||||.+.+.++
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999887754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.39  E-value=0.051  Score=46.31  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +.|+|.|.+|+|||||..++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.037  Score=45.58  Aligned_cols=21  Identities=10%  Similarity=0.120  Sum_probs=17.9

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||.....++
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999877654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.051  Score=44.77  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=19.4

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|...+.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.051  Score=44.32  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.7

Q ss_pred             EEEEecCCCChHHHHHHHHcc
Q 010799          349 ISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      |++.|.+|+|||+|+.++.+.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.05  Score=44.74  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|..++.+.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3678999999999999998874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.36  E-value=0.049  Score=44.95  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|...+.+.
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4789999999999999998753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.05  Score=45.51  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|+..+.+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3778999999999999998763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.32  E-value=0.053  Score=46.17  Aligned_cols=21  Identities=38%  Similarity=0.719  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|-|+-|+||||+++.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998877

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.051  Score=44.53  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|..++...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.26  E-value=0.052  Score=44.66  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|...+.+.
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4789999999999999988753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.25  E-value=0.034  Score=48.78  Aligned_cols=22  Identities=14%  Similarity=-0.006  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|+|||||.+.+..
T Consensus        32 e~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHc
Confidence            5899999999999999998864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.25  E-value=0.027  Score=50.80  Aligned_cols=23  Identities=22%  Similarity=0.004  Sum_probs=17.5

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      +..||+|.|.+|+||||+++.+.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            45699999999999999998775

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.23  E-value=0.052  Score=43.74  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.9

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -|++.|.+|+|||+|...+..
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999876

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.19  E-value=0.11  Score=44.96  Aligned_cols=48  Identities=0%  Similarity=-0.260  Sum_probs=32.8

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhccccccc----ccceeEEEEcCCCCCHHH
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKE----YFQCRAWVPVPEELERRE  202 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~  202 (501)
                      .-+++-|.|.+|+|||||+.++..+.....    .-...+|+.....++...
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   84 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR   84 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHH
Confidence            456899999999999999977654332221    124667888777766443

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.038  Score=46.24  Aligned_cols=21  Identities=19%  Similarity=0.164  Sum_probs=18.5

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.|+|.+|+|||||+..+.++
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999888754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.037  Score=47.45  Aligned_cols=22  Identities=9%  Similarity=-0.055  Sum_probs=19.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++|.|+|++|+|||||.+.+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4788999999999999998874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.058  Score=44.18  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ..-|+|.|.+|+|||+|...+.+.
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            356889999999999999998753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.039  Score=45.32  Aligned_cols=21  Identities=10%  Similarity=0.001  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.|+|.+|+|||||+..+.++
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999987653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.043  Score=45.26  Aligned_cols=21  Identities=14%  Similarity=0.028  Sum_probs=18.3

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||...+.++
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999877654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.054  Score=44.41  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|+.++...
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.10  E-value=0.1  Score=46.28  Aligned_cols=41  Identities=15%  Similarity=0.082  Sum_probs=30.7

Q ss_pred             hhhHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          139 NKEVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       139 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ...+.++...|...+...-.|.++|.+|+|||||...+++.
T Consensus        15 ~~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          15 QTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            34555666666655445556789999999999999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.10  E-value=0.035  Score=46.25  Aligned_cols=20  Identities=10%  Similarity=0.018  Sum_probs=18.4

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |+|+|.+|+|||||...+.+
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999988864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.041  Score=45.29  Aligned_cols=21  Identities=5%  Similarity=-0.130  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            678999999999999987653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.057  Score=44.36  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+..+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            3778999999999999998763

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.07  E-value=0.06  Score=46.70  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=22.2

Q ss_pred             CceEEEEEecCCCChHHHHHHHHcc
Q 010799          345 KNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       345 ~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ..++..|+|.-|+|||||.+++...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4689999999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.06  E-value=0.18  Score=43.96  Aligned_cols=49  Identities=10%  Similarity=0.025  Sum_probs=34.3

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccc----cccceeEEEEcCCCCCHHHH
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVK----EYFQCRAWVPVPEELERREL  203 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~----~~F~~~~wv~vs~~~~~~~l  203 (501)
                      .-+++-|.|.+|+||||||.++..+....    ......+|+......+...+
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI   87 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHH
Confidence            45789999999999999998775432211    12356678888777776544

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.044  Score=45.35  Aligned_cols=22  Identities=14%  Similarity=0.028  Sum_probs=18.6

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|.|+|.+|+|||||+..+.++
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4679999999999999887654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.04  E-value=0.065  Score=44.38  Aligned_cols=24  Identities=17%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ...|+|.|.+|+|||+|...++..
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999998863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.04  E-value=0.04  Score=45.36  Aligned_cols=21  Identities=14%  Similarity=0.113  Sum_probs=18.3

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||...+.++
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999877653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=91.03  E-value=0.043  Score=48.14  Aligned_cols=22  Identities=18%  Similarity=0.068  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|.|||||.+.+..
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G   50 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIIST   50 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=90.99  E-value=0.19  Score=44.61  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++.|.|.+|+|||+++..++.
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            5899999999999999988876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.99  E-value=0.054  Score=44.93  Aligned_cols=25  Identities=12%  Similarity=-0.117  Sum_probs=21.7

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      ....|+|+|.+|+|||||...+.+.
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999888754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=90.96  E-value=0.043  Score=48.20  Aligned_cols=22  Identities=18%  Similarity=0.149  Sum_probs=20.2

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|.|||||.+.+..
T Consensus        33 ei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5899999999999999999974

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.045  Score=45.24  Aligned_cols=21  Identities=24%  Similarity=0.131  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||+..+.++
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999877543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.92  E-value=0.042  Score=45.38  Aligned_cols=22  Identities=9%  Similarity=0.077  Sum_probs=18.8

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|.++|.+|+|||||...+.++
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999887653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.06  Score=44.46  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      --|+|.|.+|+|||+|+..+.+.
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35889999999999999998763

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.90  E-value=0.044  Score=49.54  Aligned_cols=23  Identities=9%  Similarity=-0.198  Sum_probs=19.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ..++|-+.|-||+||||+|-.+.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHH
Confidence            46788889999999999876665

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.059  Score=44.31  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.88  E-value=0.073  Score=45.79  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=21.0

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -..|+|-|+-|+||||+++.+..
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHH
Confidence            36899999999999999999887

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.87  E-value=0.059  Score=44.14  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|..++.+.
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4778899999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.043  Score=45.20  Aligned_cols=21  Identities=0%  Similarity=-0.035  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||+..+.++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999887654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.061  Score=44.35  Aligned_cols=21  Identities=38%  Similarity=0.608  Sum_probs=18.8

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -|++.|.+|+|||+|+.++..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.79  E-value=0.042  Score=48.72  Aligned_cols=21  Identities=19%  Similarity=0.060  Sum_probs=19.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhh
Q 010799          157 FTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ..++|+|..|+|||||++.+.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~   65 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIP   65 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            588999999999999999886

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.76  E-value=0.22  Score=47.17  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=55.4

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcccccccCCccceeEEEEeCCCCCh--HHHHHHHHHHhccCC
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYESSYTKKNFPCRAWANVYVSQDFDM--RSVFADILRQLTQDE  407 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~~~~~~~f~~~~w~~v~~~~~~~~--~~~~~~i~~~l~~~~  407 (501)
                      ..++.+.+++..   ....|.|.|+.|+||||....+.+  .....- . ..  +.+.++...  ...     .|.... 
T Consensus       145 ~~~~~l~~l~~~---~~GliLvtGpTGSGKSTTl~~~l~--~~~~~~-~-~i--~tiEdPiE~~~~~~-----~q~~v~-  209 (401)
T d1p9ra_         145 HNHDNFRRLIKR---PHGIILVTGPTGSGKSTTLYAGLQ--ELNSSE-R-NI--LTVEDPIEFDIDGI-----GQTQVN-  209 (401)
T ss_dssp             HHHHHHHHHHTS---SSEEEEEECSTTSCHHHHHHHHHH--HHCCTT-S-CE--EEEESSCCSCCSSS-----EEEECB-
T ss_pred             HHHHHHHHHHhh---hhceEEEEcCCCCCccHHHHHHhh--hhcCCC-c-eE--EEeccCcccccCCC-----Ceeeec-
Confidence            455566666633   337999999999999998888776  222211 1 11  233222110  000     000000 


Q ss_pred             CCCCCCHHHHHHHHHHhcCCceEEEEEcCCCChhhHHHHHH
Q 010799          408 VDEESSLDDLESEFTGILYEKRYLVVLDDVHSPGAWYDLKR  448 (501)
Q Consensus       408 ~~~~~~~~~~~~~l~~~l~~~r~LlVlDnv~~~~~~~~l~~  448 (501)
                         ..........++..++..+=+|++.++.+.+.......
T Consensus       210 ---~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~ta~~a~~  247 (401)
T d1p9ra_         210 ---PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQ  247 (401)
T ss_dssp             ---GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHH
T ss_pred             ---CCcCCCHHHHHHHHHhhcCCEEEecCcCChHHHHHHHH
Confidence               11112356667777777777888888888665554444

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.043  Score=45.45  Aligned_cols=22  Identities=9%  Similarity=0.027  Sum_probs=18.9

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|.|+|..|+|||||+..+.++
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999987654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.73  E-value=0.049  Score=44.83  Aligned_cols=21  Identities=19%  Similarity=0.045  Sum_probs=19.0

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .|+|+|.+|+|||||...+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.064  Score=44.10  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|...+...
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999988763

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.69  E-value=0.046  Score=44.82  Aligned_cols=21  Identities=10%  Similarity=-0.037  Sum_probs=18.3

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|-+|+|||||...+.++
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999887654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.066  Score=43.78  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=19.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|..++.+.
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3788999999999999998764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=90.65  E-value=0.051  Score=44.81  Aligned_cols=33  Identities=12%  Similarity=0.074  Sum_probs=23.7

Q ss_pred             HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+..++...  ..+ |.|+|.+|+|||||...+.++
T Consensus         6 ~~~~~~~~k--~~k-I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           6 RIWRLFNHQ--EHK-VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHTTS--CEE-EEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHhCCC--eEE-EEEECCCCCCHHHHHHHHhcC
Confidence            455555432  344 679999999999999887654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.65  E-value=0.066  Score=43.74  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+..+...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998764

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.64  E-value=0.17  Score=45.29  Aligned_cols=109  Identities=11%  Similarity=0.040  Sum_probs=59.0

Q ss_pred             HHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcccccc-----ccc-ceeEEEEcCCCCCH-HHHHHHHHHHhcCC--
Q 010799          144 KLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYECETVK-----EYF-QCRAWVPVPEELER-RELVTDILKQVGGS--  214 (501)
Q Consensus       144 ~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~-----~~F-~~~~wv~vs~~~~~-~~l~~~i~~~~~~~--  214 (501)
                      +.++.|..-. +=.-++|.|.+|+|||+|+..+.++....     ..- ...+++-+.+.... .++.......-..+  
T Consensus        57 raID~l~pig-~GQr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~t  135 (285)
T d2jdia3          57 KAVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT  135 (285)
T ss_dssp             HHHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred             eEEecccCcc-CCCEEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccce
Confidence            5677776422 11346899999999999987665432211     111 13466667666543 45555544331111  


Q ss_pred             ------CCcCc-c---------hHHHHHHHHccCCeEEEEEecCCC-hhHHHHHhhcC
Q 010799          215 ------KVEKQ-L---------DPQKKLRKLFTENRYLVVIINART-PDIWDILKYLF  255 (501)
Q Consensus       215 ------~~~~~-~---------~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~l~~~~  255 (501)
                            .++.. .         ..++.+++  ++|..|+++||+.. .+.+.++...+
T Consensus       136 vvv~~ts~~~~~~r~~~~~~a~tiAEyfrd--~G~~VLll~Dsltr~A~A~rEis~~~  191 (285)
T d2jdia3         136 IVVSATASDAAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDLSKQAVAYRQMSLLL  191 (285)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcChHHHHHHHHHHHHhc
Confidence                  01110 0         12333442  68999999999854 34455555443

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.63  E-value=0.048  Score=48.37  Aligned_cols=22  Identities=14%  Similarity=-0.086  Sum_probs=20.2

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|.|||||++.+.-
T Consensus        31 ei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHC
Confidence            5889999999999999999974

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.61  E-value=0.13  Score=45.61  Aligned_cols=40  Identities=25%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             hhHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHcc
Q 010799          330 NDILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       330 ~~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ..+.++...+.......-.|+|.|.+|+|||||...++..
T Consensus        16 ~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            3445555555544445567889999999999999999864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.058  Score=44.16  Aligned_cols=23  Identities=9%  Similarity=-0.068  Sum_probs=19.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .-|.|+|.+|+|||||...+.++
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            34778999999999999887653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.048  Score=44.84  Aligned_cols=21  Identities=10%  Similarity=0.047  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||+|.+...++
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999888764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.56  E-value=0.55  Score=40.27  Aligned_cols=108  Identities=15%  Similarity=0.125  Sum_probs=55.2

Q ss_pred             eEEEEEecCCCChHHHHHHHHccccc--ccCC------ccceeEEE--EeCCCCChHHHHHHHHHHhccCCCCCCCCHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIYESSYT--KKNF------PCRAWANV--YVSQDFDMRSVFADILRQLTQDEVDEESSLDD  416 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~~~~--~~~f------~~~~w~~v--~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  416 (501)
                      +++.|+|+...||||+.+.+.--.-.  ...|      ....++.+  ......++..               ..+....
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~---------------~~StF~~  100 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAG---------------GKSTFMV  100 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC---------------------CCSHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccC---------------CccHHHH
Confidence            48899999999999998876432100  1111      11111112  2222211111               1122222


Q ss_pred             HHHHHHHhcC--CceEEEEEcCCCCh---h----hHHHHHHhcCCCCCCCCCEEEEEeCChHHHhh
Q 010799          417 LESEFTGILY--EKRYLVVLDDVHSP---G----AWYDLKRIFSPQASPIGSRVILITREAYVARS  473 (501)
Q Consensus       417 ~~~~l~~~l~--~~r~LlVlDnv~~~---~----~~~~l~~~l~~~~~~~~~~iIiTtR~~~~~~~  473 (501)
                      -...++..+.  +++.|+++|++-..   .    -...+...|..    .++.+++||....+...
T Consensus       101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~----~~~~~i~tTH~~eL~~l  162 (224)
T d1ewqa2         101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELTAL  162 (224)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHHTC
T ss_pred             hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhh----cCcceEEeeechhhhhh
Confidence            2333444442  56799999999751   1    12233344433    36789999998776553

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.051  Score=46.64  Aligned_cols=22  Identities=23%  Similarity=0.043  Sum_probs=19.7

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ..|+|-|..|+||||+++.+.+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999985

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.059  Score=44.08  Aligned_cols=21  Identities=14%  Similarity=0.063  Sum_probs=18.6

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||...+.++
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999888764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.50  E-value=0.053  Score=45.05  Aligned_cols=22  Identities=14%  Similarity=0.015  Sum_probs=19.4

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|+|+|.+|+|||||...+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.48  E-value=0.058  Score=45.50  Aligned_cols=21  Identities=10%  Similarity=0.055  Sum_probs=18.5

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.|+|.+|+|||||+..+.++
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            679999999999999987754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.46  E-value=0.068  Score=43.75  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|..++...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.049  Score=44.66  Aligned_cols=21  Identities=10%  Similarity=-0.013  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||+|.....++
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.41  E-value=0.079  Score=43.68  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHcc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ...|+|.|.+|+|||||..++.+.
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999863

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.069  Score=43.86  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|+.++.+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988663

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.05  Score=44.83  Aligned_cols=21  Identities=19%  Similarity=0.118  Sum_probs=17.2

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||.....++
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999887654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.069  Score=44.14  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+.++.+.
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.084  Score=43.63  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=19.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      +-|+|.|.+|+|||+|..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35778899999999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.28  E-value=0.082  Score=43.81  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .|+|+|.+|+|||||...+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998863

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.26  E-value=0.052  Score=43.74  Aligned_cols=22  Identities=14%  Similarity=-0.037  Sum_probs=18.8

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|.++|.+|+|||||...+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999887653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.32  Score=42.16  Aligned_cols=49  Identities=4%  Similarity=-0.197  Sum_probs=35.8

Q ss_pred             CCeeEEEEEeeCChhhHHHHhhhhccc----ccccccceeEEEEcCCCCCHHH
Q 010799          154 SSLFTISVVDVAGSVMTTDLWKSYECE----TVKEYFQCRAWVPVPEELERRE  202 (501)
Q Consensus       154 ~~~~vi~I~G~~GvGKTtLa~~v~~~~----~v~~~F~~~~wv~vs~~~~~~~  202 (501)
                      +.-+++-|.|.+|+|||+||.++..+.    .....+....|+.....+....
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR   87 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHH
Confidence            356799999999999999998775432    2233456778888887776543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.21  E-value=0.054  Score=46.01  Aligned_cols=23  Identities=17%  Similarity=-0.139  Sum_probs=20.1

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      +.|.|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999888754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.19  E-value=0.055  Score=46.05  Aligned_cols=21  Identities=24%  Similarity=0.088  Sum_probs=18.9

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .|+|-|.-|+||||+++.+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998873

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=90.17  E-value=0.055  Score=46.22  Aligned_cols=21  Identities=19%  Similarity=-0.005  Sum_probs=18.7

Q ss_pred             eEEEEEeeCChhhHHHHhhhh
Q 010799          157 FTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      -+|||.|..|+||||+|+.+-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998663

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.14  E-value=0.062  Score=44.32  Aligned_cols=25  Identities=20%  Similarity=0.120  Sum_probs=20.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhccc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECE  180 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~  180 (501)
                      .++ |.++|.+|+|||||.+.+.++.
T Consensus        12 ~~k-IvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          12 EMR-ILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             CEE-EEEEEETTSSHHHHHHHTTCCC
T ss_pred             eEE-EEEECCCCCCHHHHHHHHhcCC
Confidence            466 5589999999999999987643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=90.10  E-value=0.095  Score=43.38  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .-|.|.|++|+|||++|..+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999998776

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.09  E-value=0.076  Score=43.55  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|..++...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.08  E-value=0.073  Score=44.46  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=18.5

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -|++.|.+|+|||+|..++..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            478999999999999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.086  Score=43.85  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      --|+|.|.+|+|||+|..++...
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            36889999999999999998764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.04  E-value=0.07  Score=44.15  Aligned_cols=24  Identities=4%  Similarity=-0.018  Sum_probs=21.2

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..-|+|+|.+++|||||...+..
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999998865

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.03  E-value=0.16  Score=45.25  Aligned_cols=38  Identities=21%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             hHHHHHHHhhcCCCCceEEEEEecCCCChHHHHHHHHc
Q 010799          331 DILKLAKLTLNSSDKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       331 ~~~~l~~~L~~~~~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+..|..+|....++..++.++|+|+.|||+++..+..
T Consensus        89 f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            44556666755556778999999999999999988776

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.99  E-value=0.079  Score=44.62  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.3

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|+..+...
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            4789999999999999998764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=89.93  E-value=0.094  Score=43.40  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .-|.|.|.+|+||||+|..+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            5789999999999999998776

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=89.91  E-value=0.08  Score=43.12  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|..++...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4678899999999999988653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.062  Score=44.50  Aligned_cols=21  Identities=14%  Similarity=-0.039  Sum_probs=17.9

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.|+|.+|+|||||.....++
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578899999999999877654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.91  E-value=0.048  Score=45.52  Aligned_cols=21  Identities=14%  Similarity=0.006  Sum_probs=18.9

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -|+|+|.+++|||||...+.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999998865

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.083  Score=43.52  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -|++.|.+|+|||+|+..+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.87  E-value=0.058  Score=44.30  Aligned_cols=21  Identities=5%  Similarity=-0.024  Sum_probs=17.8

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|..|+|||||.....++
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999877653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.064  Score=44.84  Aligned_cols=21  Identities=19%  Similarity=-0.126  Sum_probs=18.4

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.|+|.+|+|||||.....++
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            788999999999999887654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.78  E-value=0.11  Score=44.81  Aligned_cols=34  Identities=12%  Similarity=0.114  Sum_probs=26.6

Q ss_pred             hHHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          141 EVNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       141 ~~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+++|.++|..     ++..++|.+|||||||...+..+
T Consensus        85 g~~~L~~~l~~-----kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          85 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hHhhHHHHhcC-----CeEEEECCCCCCHHHHHHhhcch
Confidence            35677777742     46688999999999999998754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.086  Score=43.99  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.5

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|+|.|.+|+|||+|..++.+.
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4889999999999999998764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=89.69  E-value=0.092  Score=45.80  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+|+|+|..|+||||+|..+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.68  E-value=0.084  Score=43.93  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+..+.+.
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=89.67  E-value=0.093  Score=42.39  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=18.7

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|++.|.+|+|||||..++..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            477999999999999999875

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.65  E-value=0.11  Score=48.64  Aligned_cols=45  Identities=11%  Similarity=-0.034  Sum_probs=32.3

Q ss_pred             cccccchhhHHHHHHHHh----------------------------cCCCCeeEEEEEeeCChhhHHHHhhhh
Q 010799          133 TGILDLNKEVNKLADFLI----------------------------RSHSSLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~----------------------------~~~~~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      ..++|.++.++.+...+-                            +.+.....+-.+|+.|||||.||+.+.
T Consensus        17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHH
Confidence            467888888777654441                            112245567889999999999999886

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.62  E-value=0.063  Score=44.76  Aligned_cols=21  Identities=10%  Similarity=0.022  Sum_probs=18.3

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||+..+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999887653

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.62  E-value=0.067  Score=46.39  Aligned_cols=21  Identities=29%  Similarity=0.085  Sum_probs=18.5

Q ss_pred             eEEEEE-eeCChhhHHHHhhhh
Q 010799          157 FTISVV-DVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~-G~~GvGKTtLa~~v~  177 (501)
                      +||+|+ +-||+||||+|..+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA   24 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLS   24 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHH
Confidence            689999 669999999998876

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.083  Score=45.74  Aligned_cols=24  Identities=17%  Similarity=0.073  Sum_probs=21.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .++|..|.|+-|.|||||.+.+..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHh
Confidence            578999999999999999988875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.59  E-value=0.083  Score=44.40  Aligned_cols=19  Identities=37%  Similarity=0.574  Sum_probs=17.4

Q ss_pred             EEEEEecCCCChHHHHHHH
Q 010799          348 LISVAGAAGSGKTALVKTI  366 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~  366 (501)
                      -|.|.|.+|+|||+|..++
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999987

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.52  E-value=0.092  Score=43.59  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+..+.+.
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4779999999999999988764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.48  E-value=0.067  Score=45.51  Aligned_cols=23  Identities=13%  Similarity=-0.041  Sum_probs=19.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      +-|.|+|.+|+|||||...+.++
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999888764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.44  E-value=0.07  Score=44.17  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=21.4

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ++...|+|.|.+++|||||..++..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4457899999999999999988755

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.091  Score=43.25  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|+..+.+.
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3889999999999999887653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.40  E-value=0.062  Score=44.60  Aligned_cols=20  Identities=20%  Similarity=0.517  Sum_probs=18.5

Q ss_pred             EEEEecCCCChHHHHHHHHc
Q 010799          349 ISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       349 v~I~G~gGvGKT~LA~~~~~  368 (501)
                      |+|.|.+|+|||||...+..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.37  E-value=0.062  Score=44.80  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -|+|.|.+++|||||...+.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=89.36  E-value=0.094  Score=42.97  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      .-|++.|.+|+|||+|+.++...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35789999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=89.34  E-value=0.072  Score=43.87  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      --|.+.|.+|+|||+|..++.+.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34778999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=89.27  E-value=0.1  Score=42.88  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .-|.|.|.+|+|||++|..+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            5789999999999999988776

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=89.09  E-value=0.083  Score=43.31  Aligned_cols=24  Identities=13%  Similarity=-0.004  Sum_probs=19.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhcc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      +.-|.++|.+|+|||||+..+.++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            345779999999999999887653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.1  Score=43.12  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|..++.+.
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999988653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.073  Score=44.04  Aligned_cols=21  Identities=14%  Similarity=0.131  Sum_probs=18.3

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||.+.+.++
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999987653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=89.02  E-value=0.054  Score=47.26  Aligned_cols=22  Identities=18%  Similarity=0.048  Sum_probs=19.7

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .+++|+|..|.|||||.+.+..
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5899999999999999988863

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.00  E-value=0.074  Score=43.65  Aligned_cols=22  Identities=18%  Similarity=0.065  Sum_probs=18.7

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|.|+|.+|+|||+|+....+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999877543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=88.98  E-value=0.075  Score=43.33  Aligned_cols=21  Identities=19%  Similarity=-0.062  Sum_probs=17.8

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||...+.++
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            568999999999999877653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.98  E-value=0.1  Score=43.63  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -|++.|.+|+|||+|..++..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999865

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.93  E-value=0.084  Score=46.09  Aligned_cols=23  Identities=17%  Similarity=-0.130  Sum_probs=20.6

Q ss_pred             eeEEEEEeeCChhhHHHHhhhhc
Q 010799          156 LFTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +++|+|.|..|+||||+|+.+.+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.91  E-value=0.11  Score=43.61  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=18.9

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|..++...
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4778899999999999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=0.068  Score=43.95  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=17.7

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -|++.|.+|+|||+|..++.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            377889999999999998765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.79  E-value=0.091  Score=43.12  Aligned_cols=21  Identities=14%  Similarity=0.080  Sum_probs=18.2

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||||...+.++
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            567899999999999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.77  E-value=0.11  Score=42.59  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=18.9

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|...+.+.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3667899999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.72  E-value=0.087  Score=43.39  Aligned_cols=22  Identities=5%  Similarity=-0.003  Sum_probs=18.4

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|.++|.+|+|||||+..+.++
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999777543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=88.67  E-value=0.35  Score=44.18  Aligned_cols=105  Identities=12%  Similarity=0.196  Sum_probs=59.2

Q ss_pred             EEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCH--HHHHHHHHHHhcCCCCcCcchHHHHHHHHccCCeE
Q 010799          158 TISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELER--RELVTDILKQVGGSKVEKQLDPQKKLRKLFTENRY  235 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~kr~  235 (501)
                      -|.|.|..|.|||||.+.+.+.  +-.  +.+ -|++.+...+  ..- ..+ -++.   .....+....++..|+..-=
T Consensus       168 nili~G~tgSGKTT~l~al~~~--i~~--~~r-ivtiEd~~El~l~~~-~~~-~~~~---~~~~~~~~~ll~~~lR~~pd  237 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF--IPK--EER-IISIEDTEEIVFKHH-KNY-TQLF---FGGNITSADCLKSCLRMRPD  237 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG--SCT--TCC-EEEEESSCCCCCSSC-SSE-EEEE---CBTTBCHHHHHHHHTTSCCS
T ss_pred             CEEEEeeccccchHHHHHHhhh--ccc--ccc-eeeccchhhhhcccc-ccc-ceec---cccchhHHHHHHHHhccCCC
Confidence            3788999999999999988742  211  111 1222222111  000 000 0000   01122356777888877777


Q ss_pred             EEEEecCCChhHHHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          236 LVVIINARTPDIWDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       236 LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      -||+..+.+.+.|..+.. ...++.|  ++.|..-.+...
T Consensus       238 ~iivgEiR~~ea~~~l~a-~~tGh~g--~~tT~Ha~s~~~  274 (323)
T d1g6oa_         238 RIILGELRSSEAYDFYNV-LCSGHKG--TLTTLHAGSSEE  274 (323)
T ss_dssp             EEEESCCCSTHHHHHHHH-HHTTCSC--EEEEECCSSHHH
T ss_pred             cccCCccCchhHHHHHHH-HHhcCCc--EEEEECCCCHHH
Confidence            799999999998876554 4444445  566666555543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.54  E-value=0.1  Score=43.30  Aligned_cols=21  Identities=24%  Similarity=-0.059  Sum_probs=18.0

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|..|+|||+|++.+.++
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999877654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.073  Score=45.21  Aligned_cols=49  Identities=4%  Similarity=-0.190  Sum_probs=31.6

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccc----cceeEEEEcCCCCCHHHH
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEY----FQCRAWVPVPEELERREL  203 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l  203 (501)
                      .-.++-|.|.+|+||||||.++..+......    +....++..........+
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL   74 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHHH
Confidence            3468899999999999999877644322222    234456666655555443

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=0.12  Score=42.79  Aligned_cols=22  Identities=32%  Similarity=0.521  Sum_probs=19.6

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|...+.+.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.094  Score=43.41  Aligned_cols=22  Identities=14%  Similarity=0.049  Sum_probs=18.5

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|.++|.+|+|||||.....++
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4688999999999999877653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.31  E-value=0.083  Score=44.06  Aligned_cols=21  Identities=10%  Similarity=-0.086  Sum_probs=17.7

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|-+|+|||||.+....+
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            578999999999999886543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.11  Score=43.07  Aligned_cols=22  Identities=18%  Similarity=-0.120  Sum_probs=18.6

Q ss_pred             EEEEEeeCChhhHHHHhhhhcc
Q 010799          158 TISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      -|.|+|.+|+|||||...+.++
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999877653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.30  E-value=0.092  Score=43.20  Aligned_cols=20  Identities=10%  Similarity=-0.110  Sum_probs=17.5

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.++|.+|+|||||++.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999987753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=88.23  E-value=0.29  Score=42.15  Aligned_cols=57  Identities=14%  Similarity=0.112  Sum_probs=36.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcccccccc--------------cceeEEEEcCCCCCHHHHHHHHHHHhc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETVKEY--------------FQCRAWVPVPEELERRELVTDILKQVG  212 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~--------------F~~~~wv~vs~~~~~~~l~~~i~~~~~  212 (501)
                      .-.++-|.|.+|+|||++|.++..+.-....              -....|++....++.. ....+...+.
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~-~~~~~~~~~~  103 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE-RIMQMAEHAG  103 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHH-HHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCcCHH-HHHHHHhhcc
Confidence            3478999999999999999888644322211              1245677776666544 3344444443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=88.14  E-value=0.13  Score=42.66  Aligned_cols=23  Identities=22%  Similarity=0.499  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -.|+|.|.+|+|||||..++...
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            35889999999999999988763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.95  E-value=0.091  Score=44.13  Aligned_cols=18  Identities=22%  Similarity=0.058  Sum_probs=16.4

Q ss_pred             EEEEeeCChhhHHHHhhh
Q 010799          159 ISVVDVAGSVMTTDLWKS  176 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v  176 (501)
                      |.++|.+|+|||||....
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            678999999999999877

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.92  E-value=0.16  Score=43.22  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=19.1

Q ss_pred             eEEEEEecC-CCChHHHHHHHHc
Q 010799          347 FLISVAGAA-GSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~g-GvGKT~LA~~~~~  368 (501)
                      +.+.|.|.| ||||||++..++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            568899998 9999998888777

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=87.91  E-value=0.1  Score=42.13  Aligned_cols=20  Identities=5%  Similarity=-0.090  Sum_probs=17.6

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |+++|.+|+|||||...+..
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67999999999999988763

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=87.85  E-value=0.1  Score=44.41  Aligned_cols=22  Identities=23%  Similarity=0.042  Sum_probs=19.5

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +.|+|-|..|+||||+++.+.+
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999874

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.72  E-value=1.1  Score=38.58  Aligned_cols=107  Identities=4%  Similarity=-0.122  Sum_probs=55.9

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhccccc-------------ccccceeEEEEcCCCCCHHHHHHHHHHHhcCCCCcCcch
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETV-------------KEYFQCRAWVPVPEELERRELVTDILKQVGGSKVEKQLD  221 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v-------------~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~~~~~~~~~  221 (501)
                      +-+++.|.|+...||||+.+.+.-..-.             -..||. ++..+...-+...=+            ..-..
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~-I~~~~~~~d~~~~~~------------S~F~~  106 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR-IFTRVGAADDLASGR------------STFMV  106 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE-EEEEEC-----------------------CHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchh-heeEEccCcccccch------------hHHHH
Confidence            3478889999999999998887532100             112322 233333222211100            00011


Q ss_pred             HHHHHHHHc--cCCeEEEEEecCCChh---H----HHHHhhcCCCCCCCcEEEEEeccccchh
Q 010799          222 PQKKLRKLF--TENRYLVVIINARTPD---I----WDILKYLFPNSSNGSRVILSFQEADAAR  275 (501)
Q Consensus       222 ~~~~l~~~l--~~kr~LlVlDdv~~~~---~----~~~l~~~~~~~~~gs~iivTtr~~~va~  275 (501)
                      ....+...+  .+++.|+++|.+-...   +    -..+...+. ...++.+|+||....++.
T Consensus       107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~-~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLA-NKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHH-HTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhh-ccccceEEEecchHHHhh
Confidence            133444444  3578899999996421   1    112222232 235788999999888876

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.70  E-value=0.14  Score=44.14  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=19.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .-|++.|.+|+|||+|..++..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4678999999999999998753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=87.70  E-value=0.1  Score=43.31  Aligned_cols=24  Identities=8%  Similarity=-0.015  Sum_probs=19.9

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .++ |+|+|..|+|||||...+.+.
T Consensus         8 ~~k-V~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIK-VAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEE-EEEECSTTSSHHHHHHHHHTS
T ss_pred             CCE-EEEECCCCCCHHHHHHHHHCC
Confidence            344 799999999999999888753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.57  E-value=0.11  Score=44.55  Aligned_cols=22  Identities=18%  Similarity=0.025  Sum_probs=20.0

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +.|+|-|.-|+||||+++.+.+
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHH
Confidence            5789999999999999999874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=0.13  Score=43.12  Aligned_cols=21  Identities=19%  Similarity=-0.127  Sum_probs=17.6

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |.++|.+|+|||+|.....++
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999998776543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.43  E-value=0.077  Score=43.70  Aligned_cols=20  Identities=20%  Similarity=0.220  Sum_probs=8.3

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.++|-+|+|||||...+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999986654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.13  E-value=0.065  Score=43.33  Aligned_cols=21  Identities=14%  Similarity=0.007  Sum_probs=18.6

Q ss_pred             EEEEeeCChhhHHHHhhhhcc
Q 010799          159 ISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~~  179 (501)
                      |+++|.+|+|||||...+.+.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999888653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=87.09  E-value=0.12  Score=47.22  Aligned_cols=22  Identities=18%  Similarity=-0.112  Sum_probs=18.9

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .++-++|.+|+|||.||+.+..
T Consensus       124 g~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            4556689999999999999984

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.97  E-value=0.12  Score=43.32  Aligned_cols=20  Identities=10%  Similarity=-0.064  Sum_probs=17.4

Q ss_pred             EEEEeeCChhhHHHHhhhhc
Q 010799          159 ISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       159 i~I~G~~GvGKTtLa~~v~~  178 (501)
                      |.++|-+|+|||+|.....+
T Consensus         5 iv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            57899999999999988754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.65  E-value=0.1  Score=42.91  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=8.7

Q ss_pred             EEEEEecCCCChHHHHHHHHcc
Q 010799          348 LISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -|++.|.+|+|||+|...+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788899999999999887653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=86.57  E-value=0.21  Score=47.82  Aligned_cols=77  Identities=13%  Similarity=0.085  Sum_probs=44.5

Q ss_pred             cccccchhhHHHHHHHHh--------cC----CCCeeEEEEEeeCChhhHHHHhhhhccccccccc---ceeEEEEc-CC
Q 010799          133 TGILDLNKEVNKLADFLI--------RS----HSSLFTISVVDVAGSVMTTDLWKSYECETVKEYF---QCRAWVPV-PE  196 (501)
Q Consensus       133 ~~~vg~~~~~~~l~~~L~--------~~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F---~~~~wv~v-s~  196 (501)
                      ..+||.++.+..|--.+-        ..    +-..+-|-++|+.|+|||.||+.+..  .+.-.|   |+.-+.-+ --
T Consensus        14 ~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk--~l~VPFv~~daT~fTeaGYv   91 (443)
T d1g41a_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV   91 (443)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH--HTTCCEEEEEGGGGC----C
T ss_pred             CcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHH--HhCCCEEEeecceeeeccee
Confidence            467888887777655442        11    11245688999999999999999974  222233   11111111 01


Q ss_pred             CCCHHHHHHHHHHHh
Q 010799          197 ELERRELVTDILKQV  211 (501)
Q Consensus       197 ~~~~~~l~~~i~~~~  211 (501)
                      .-|++.+++.+++..
T Consensus        92 G~DVesii~~L~~~a  106 (443)
T d1g41a_          92 GKEVDSIIRDLTDSA  106 (443)
T ss_dssp             CCCTHHHHHHHHHHH
T ss_pred             ecchhHHHHHHHHHH
Confidence            236777777766543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=85.73  E-value=0.26  Score=39.74  Aligned_cols=28  Identities=11%  Similarity=-0.133  Sum_probs=22.9

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhhccccc
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSYECETV  182 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~~~~~v  182 (501)
                      .--+|.+.|-=|+||||+++.+.+.-.+
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            3458999999999999999999865433

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.36  E-value=0.95  Score=40.16  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=18.9

Q ss_pred             eEEEEEecCCCChHHHHHHHHc
Q 010799          347 FLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      ..++|.|.+|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            4788999999999999887765

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.37  Score=42.87  Aligned_cols=34  Identities=9%  Similarity=-0.001  Sum_probs=27.5

Q ss_pred             HHHHhcCCCCeeEEEEEeeCChhhHHHHhhhhcc
Q 010799          146 ADFLIRSHSSLFTISVVDVAGSVMTTDLWKSYEC  179 (501)
Q Consensus       146 ~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~~~  179 (501)
                      .+.|..-+.++.||+|+|.-+.|||||...++..
T Consensus        22 l~~l~~~~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          22 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             HHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             HHHHHcCCCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            3455544557999999999999999999998853

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.10  E-value=0.075  Score=42.95  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=18.8

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      -|++.|.+|+|||||...+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.37  E-value=0.18  Score=43.37  Aligned_cols=22  Identities=9%  Similarity=-0.065  Sum_probs=18.4

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      .-|.++|.+|+|||||.+....
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3468999999999999988753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.09  E-value=0.26  Score=43.86  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=21.4

Q ss_pred             CCceEEEEEecCCCChHHHHHHHHc
Q 010799          344 DKNFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       344 ~~~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .+.|.|+|.|.+|.|||||+-++..
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHH
Confidence            3568899999999999999988753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.94  E-value=0.23  Score=44.23  Aligned_cols=23  Identities=17%  Similarity=0.037  Sum_probs=20.7

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      +++-|+|+|.+|.|||||+..+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHH
Confidence            57889999999999999997774

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=83.57  E-value=0.5  Score=41.74  Aligned_cols=54  Identities=13%  Similarity=-0.116  Sum_probs=35.3

Q ss_pred             eEEEEEeeCChhhHHHHhhhhcccccccccceeEEEEcCCCCCHHHHHHHHHHHhcC
Q 010799          157 FTISVVDVAGSVMTTDLWKSYECETVKEYFQCRAWVPVPEELERRELVTDILKQVGG  213 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~~i~~~~~~  213 (501)
                      .++.|.|.+|+||||++.++..+......+. ++++  +-+.+..++...++.....
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~-v~~~--s~E~~~~~~~~r~~~~~~~   89 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKK-VGLA--MLEESVEETAEDLIGLHNR   89 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCC-EEEE--ESSSCHHHHHHHHHHHHTT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccc-eeEe--eeccchhhHHhHHHHHhhc
Confidence            4677899999999999877764322233333 2333  4445677777777766554

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.34  E-value=0.34  Score=41.66  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .++|+|.|-+++|||||+..+..
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHh
Confidence            36799999999999999988754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.14  E-value=0.23  Score=42.88  Aligned_cols=22  Identities=23%  Similarity=-0.065  Sum_probs=19.4

Q ss_pred             eEEEEEeeCChhhHHHHhhhhc
Q 010799          157 FTISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      ++|+|+|-.++|||||+..+..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHh
Confidence            5799999999999999987754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=82.93  E-value=0.47  Score=43.40  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      -.|.|-|+-|+||||+++.+.+.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEEECCccCCHHHHHHHHHHH
Confidence            46888899999999999999883

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=82.43  E-value=0.31  Score=43.15  Aligned_cols=21  Identities=33%  Similarity=0.145  Sum_probs=19.0

Q ss_pred             eeEEEEEeeCChhhHHHHhhh
Q 010799          156 LFTISVVDVAGSVMTTDLWKS  176 (501)
Q Consensus       156 ~~vi~I~G~~GvGKTtLa~~v  176 (501)
                      ++.|+|+|..|.|||||+..+
T Consensus         2 iRNv~iiGh~~~GKTtL~e~l   22 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEAL   22 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHH
Confidence            477999999999999999877

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=82.43  E-value=0.15  Score=44.03  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=19.1

Q ss_pred             eEEEEEecCCCChHHHHHHHHcc
Q 010799          347 FLISVAGAAGSGKTALVKTIYES  369 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~~~  369 (501)
                      ++.++.|.+|+|||||...+..+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            35678899999999999998763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.85  E-value=0.2  Score=43.21  Aligned_cols=21  Identities=14%  Similarity=-0.053  Sum_probs=18.2

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      +..++|.+|+|||||...+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC
T ss_pred             eEEEECCCCccHHHHHHhhcc
Confidence            446889999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=81.82  E-value=0.28  Score=41.97  Aligned_cols=23  Identities=13%  Similarity=-0.172  Sum_probs=19.1

Q ss_pred             CeeEEEEEeeCChhhHHHHhhhh
Q 010799          155 SLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       155 ~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .-.++-|.|.+|+|||+||.++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            45688899999999999996643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=81.75  E-value=0.43  Score=42.18  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=19.2

Q ss_pred             eEEEEEecCCCChHHHHHHHH
Q 010799          347 FLISVAGAAGSGKTALVKTIY  367 (501)
Q Consensus       347 ~~v~I~G~gGvGKT~LA~~~~  367 (501)
                      |.|+|.|..|.|||||+..+.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHH
Confidence            789999999999999998874

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=81.46  E-value=0.29  Score=43.22  Aligned_cols=21  Identities=10%  Similarity=-0.092  Sum_probs=17.8

Q ss_pred             eEEEEEeeCChhhHHHHhhhh
Q 010799          157 FTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      .+..|+|.+|+|||||+..+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            466789999999999987765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=81.43  E-value=0.31  Score=40.17  Aligned_cols=21  Identities=14%  Similarity=-0.113  Sum_probs=18.8

Q ss_pred             EEEEEeeCChhhHHHHhhhhc
Q 010799          158 TISVVDVAGSVMTTDLWKSYE  178 (501)
Q Consensus       158 vi~I~G~~GvGKTtLa~~v~~  178 (501)
                      -|+|+|.+.+|||||...+..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999988863

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=81.02  E-value=0.51  Score=39.52  Aligned_cols=35  Identities=11%  Similarity=-0.037  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEeeCChhhHHHHhhhh
Q 010799          142 VNKLADFLIRSHSSLFTISVVDVAGSVMTTDLWKSY  177 (501)
Q Consensus       142 ~~~l~~~L~~~~~~~~vi~I~G~~GvGKTtLa~~v~  177 (501)
                      +..|..+|. ..++...+.++|+++.|||++|..+.
T Consensus        40 l~~l~~~l~-~~PKkn~i~~~GP~~TGKS~f~~sl~   74 (205)
T d1tuea_          40 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFI   74 (205)
T ss_dssp             HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCceEEEEECCCCccHHHHHHHHH
Confidence            345666664 44677899999999999999998776

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.90  E-value=0.36  Score=40.76  Aligned_cols=21  Identities=10%  Similarity=-0.214  Sum_probs=17.6

Q ss_pred             eEEEEEeeC-ChhhHHHHhhhh
Q 010799          157 FTISVVDVA-GSVMTTDLWKSY  177 (501)
Q Consensus       157 ~vi~I~G~~-GvGKTtLa~~v~  177 (501)
                      +.+-|.|-| ||||||++-.+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            457799998 999999887765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=80.76  E-value=0.46  Score=38.99  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             EEEEEecCCCChHHHHHHHHc
Q 010799          348 LISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      .|+|.|.+++|||||..++..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            599999999999999999864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.67  E-value=0.43  Score=44.96  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.1

Q ss_pred             ceEEEEEecCCCChHHHHHHHHc
Q 010799          346 NFLISVAGAAGSGKTALVKTIYE  368 (501)
Q Consensus       346 ~~~v~I~G~gGvGKT~LA~~~~~  368 (501)
                      +--|+|.|.+|+|||+|...+..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            35699999999999999998864

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=80.28  E-value=0.4  Score=43.33  Aligned_cols=18  Identities=33%  Similarity=0.521  Sum_probs=14.2

Q ss_pred             EEEEEecCCCChHHHHHH
Q 010799          348 LISVAGAAGSGKTALVKT  365 (501)
Q Consensus       348 ~v~I~G~gGvGKT~LA~~  365 (501)
                      .+.|.|.+|+||||.+.+
T Consensus        26 ~~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             CEEEEECTTSCHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHH
Confidence            367889999999986543